ClCG01G013960 (gene) Watermelon (Charleston Gray)

Overview
NameClCG01G013960
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionHistone H2B
LocationCG_Chr01 : 28150624 .. 28152005 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGCCAAGACGATCACGCAGAATCGTGGGTTCTGTCGTCCGGACTACCACGAGGGTAGTGGAAGAAACTGTACAAGTGGCGGTGGTGGAGAAAGAAAGTCAGGATTTGACTCAAGAACCCGACACTGCCGCAGAAACCGGTGGTGGCGATGGCGGAGAAATGTTTCAGAGGACTGTTCCGGTGGAAGGGAAGACTCCGCCTCCAGAACAGCCCACAACTCTGCCTGCGTCGCAAGATTCTGAGCCGAGAAGGGCAATGGATTCAACCTCGCAGGTCACAGAGGATATCGATGTGGCTCCAAAGACCGACCCCGAGGTCGGGAATGGTAAGAACATCACTATAAATGACAAAAGGATTATAAATATTTTCTCCACATAGTTAGATGGATAGTTATTTGAAGAATTGAAATTATGAGTAAATTTAGAGTGGATTTGAAATACATTTTCAAGTGTTTAATTAAAAAAAAAAAAAAATCAATTTCAACCACCCCTACAAATAAACTTTGAAGTGAAATGTATTTTAAAGAGTTTAAATAAAAATTAACATTTTGAAGAAAAATCTCCCAAGTCGATCCTAACGGACCTTAGAACAATGGAAAGCAATGAAAATGGTATTTTATGAAAACTTTAGTTGAAAATTTTGATTGAACAGAAAGAAAGGAGAAGAAAAAGGGAAAGGAAGGAAAAATGAAGAGAAGGAAAAGAAAAAATAATGGTGGAAGAGAAGGGTACAAGAGGTACGTGTGGAAAGTGTTGAAACAAGTGCATCCGGAGATGGGAATATCGGGGAAAGCCATGTTGATTCTCAACAATTTGATGAACGATATGTTTGAAAGACTAGCTCAAGAAGCAACTCAACTCTCCAAATATACAGGTATCCTTCAATATATCCCATTATCACATAATCTAACCACGAATATAGCAAATTATTTTTATCTATAAATCAATTTTATCATTATTGTCCATCACATTTTGCATTTTCAATATTAACAATCAAATTAAAATTAGCCATTCTCCTACTTTTGTTGCGAGAAGATTTTGAAATCTATTAAATCAAGGGAATGAGAATAATTAAAAAAACTAAAATAAGTATCAACTCTCAGTTAAGTACTAATTGTATTTTAAAATTTTAAAATAATTATTTCAATAGTTATGAAGAATGAGCAGAAATTAATTAAAATTGTTTTGAGGATAATAATAATAGTTGGAATTTGGGAATATTGGTGGGTGATAGGTGGAATGACGCTGTCATCAAGAGAAATACAGGGGGCGGTGAGGTTAGTGTTGCCTGGAGAGCTTGGGAAGCACGCCATCGCTGAGGGAACTAAAGCTGTCTCCAATTATGTATCTTATGATCATAGGAGACCCAAATTACCATAA

mRNA sequence

ATGCCGCCAAGACGATCACGCAGAATCGTGGGTTCTGTCGTCCGGACTACCACGAGGGTAGTGGAAGAAACTGTACAAGTGGCGGTGGTGGAGAAAGAAAGTCAGGATTTGACTCAAGAACCCGACACTGCCGCAGAAACCGGTGGTGGCGATGGCGGAGAAATGTTTCAGAGGACTGTTCCGGTGGAAGGGAAGACTCCGCCTCCAGAACAGCCCACAACTCTGCCTGCGTCGCAAGATTCTGAGCCGAGAAGGGCAATGGATTCAACCTCGCAGGTCACAGAGGATATCGATGTGGCTCCAAAGACCGACCCCGAGGTCGGGAATGAAAGAAAGGAGAAGAAAAAGGGAAAGGAAGGAAAAATGAAGAGAAGGAAAAGAAAAAATAATGGTGGAAGAGAAGGGTACAAGAGGTACGTGTGGAAAGTGTTGAAACAAGTGCATCCGGAGATGGGAATATCGGGGAAAGCCATGTTGATTCTCAACAATTTGATGAACGATATGTTTGAAAGACTAGCTCAAGAAGCAACTCAACTCTCCAAATATACAGGTGGAATGACGCTGTCATCAAGAGAAATACAGGGGGCGGTGAGGTTAGTGTTGCCTGGAGAGCTTGGGAAGCACGCCATCGCTGAGGGAACTAAAGCTGTCTCCAATTATGTATCTTATGATCATAGGAGACCCAAATTACCATAA

Coding sequence (CDS)

ATGCCGCCAAGACGATCACGCAGAATCGTGGGTTCTGTCGTCCGGACTACCACGAGGGTAGTGGAAGAAACTGTACAAGTGGCGGTGGTGGAGAAAGAAAGTCAGGATTTGACTCAAGAACCCGACACTGCCGCAGAAACCGGTGGTGGCGATGGCGGAGAAATGTTTCAGAGGACTGTTCCGGTGGAAGGGAAGACTCCGCCTCCAGAACAGCCCACAACTCTGCCTGCGTCGCAAGATTCTGAGCCGAGAAGGGCAATGGATTCAACCTCGCAGGTCACAGAGGATATCGATGTGGCTCCAAAGACCGACCCCGAGGTCGGGAATGAAAGAAAGGAGAAGAAAAAGGGAAAGGAAGGAAAAATGAAGAGAAGGAAAAGAAAAAATAATGGTGGAAGAGAAGGGTACAAGAGGTACGTGTGGAAAGTGTTGAAACAAGTGCATCCGGAGATGGGAATATCGGGGAAAGCCATGTTGATTCTCAACAATTTGATGAACGATATGTTTGAAAGACTAGCTCAAGAAGCAACTCAACTCTCCAAATATACAGGTGGAATGACGCTGTCATCAAGAGAAATACAGGGGGCGGTGAGGTTAGTGTTGCCTGGAGAGCTTGGGAAGCACGCCATCGCTGAGGGAACTAAAGCTGTCTCCAATTATGTATCTTATGATCATAGGAGACCCAAATTACCATAA

Protein sequence

MPPRRSRRIVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAAETGGGDGGEMFQRTVPVEGKTPPPEQPTTLPASQDSEPRRAMDSTSQVTEDIDVAPKTDPEVGNERKEKKKGKEGKMKRRKRKNNGGREGYKRYVWKVLKQVHPEMGISGKAMLILNNLMNDMFERLAQEATQLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYDHRRPKLP
Homology
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BLAST of ClCG01G013960 vs. Swiss-Prot
Match: H2B2_ARATH (Histone H2B.2 OS=Arabidopsis thaliana GN=At1g08170 PE=2 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 6.5e-37
Identity = 99/256 (38.67%), Postives = 138/256 (53.91%), Query Frame = 1 

Query: 1   MPPRRSRRIVGSVVRTTTRVVEETVQVAVVEK-------------ESQDLT--------- 60
           M PR+ + +    V    +VVEET++V V E+             E+QDLT         
Sbjct: 1   MAPRKPKVVS---VTKKKKVVEETIKVTVTEEGDPCVITETANDQETQDLTFSIPVGENV 60

Query: 61  -------QEPDTAAETGGGDGGEMFQRTVPVEGKTPPPEQPTTLPASQDSEPRRAMDSTS 120
                  + PD   E     G  +    +PV+ +     QP   P     EP      T 
Sbjct: 61  TTVEIPVEVPD---ERSLPVGENVTTVKIPVDDRDESSPQPPETPVEVRDEPSPQPPETP 120

Query: 121 QVTEDIDVAPKTDPEVGNERKEKKKGKEGKMKRRKRKNNGGREGYKRYVWKVLKQVHPEM 180
                   A K++  +    K +KK +  K K++K++++   + Y+RYV+KV+KQVHP++
Sbjct: 121 --------ASKSEGTLKKTDKVEKKQENKKKKKKKKRDDLAGDEYRRYVYKVMKQVHPDL 180

Query: 181 GISGKAMLILNNLMNDMFERLAQEATQLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIA 228
           GI+ KAM ++N  M DMFER+AQEA +LS YT   TLSSREI+ AVRLVLPGEL +HA+A
Sbjct: 181 GITSKAMTVVNMFMGDMFERIAQEAARLSDYTKRRTLSSREIEAAVRLVLPGELSRHAVA 240

[Close]
BLAST of ClCG01G013960 vs. Swiss-Prot
Match: H2B8_ARATH (Histone H2B.8 OS=Arabidopsis thaliana GN=At3g53650 PE=1 SV=3)

HSP 1 Score: 134.8 bits (338), Expect = 1.2e-30
Identity = 65/112 (58.04%), Postives = 89/112 (79.46%), Query Frame = 1 

Query: 111 RKEKKKGKEGKMKRRKRKNNGGREGYKRYVWKVLKQVHPEMGISGKAMLILNNLMNDMFE 170
           + EKK  KEG  +++K+K+    E YK Y++KVLKQVHP++GISGKAM I+N+ +ND+FE
Sbjct: 26  KAEKKITKEGGSEKKKKKSKKNIETYKIYIFKVLKQVHPDIGISGKAMGIMNSFINDIFE 85

Query: 171 RLAQEATQLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVS 223
           +LAQE+++L++Y    T++SREIQ AVRLVLPGEL KHA++EGTKAV+ + S
Sbjct: 86  KLAQESSRLARYNKKPTITSREIQTAVRLVLPGELSKHAVSEGTKAVTKFTS 137

[Close]
BLAST of ClCG01G013960 vs. Swiss-Prot
Match: H2B9_ARATH (Histone H2B.9 OS=Arabidopsis thaliana GN=At5g02570 PE=1 SV=3)

HSP 1 Score: 132.5 bits (332), Expect = 5.9e-30
Identity = 68/131 (51.91%), Postives = 96/131 (73.28%), Query Frame = 1 

Query: 99  VAPKTDPEVGNE----RKEKKKGKEG---KMKRRKRKNNGGREGYKRYVWKVLKQVHPEM 158
           +APK + +   +    + EKK  KEG   ++ ++K+K     E YK Y++KVLKQVHP++
Sbjct: 1   MAPKAEKKPAEKAPAPKAEKKIAKEGGTSEIVKKKKKTKKSTETYKIYIFKVLKQVHPDI 60

Query: 159 GISGKAMLILNNLMNDMFERLAQEATQLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIA 218
           GISGKAM I+N+ +ND+FE+LAQE+++L++Y    T++SREIQ AVRLVLPGEL KHA++
Sbjct: 61  GISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVS 120

Query: 219 EGTKAVSNYVS 223
           EGTKAV+ + S
Sbjct: 121 EGTKAVTKFTS 131

[Close]
BLAST of ClCG01G013960 vs. Swiss-Prot
Match: H2B3_MEDTR (Probable histone H2B.3 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 131.7 bits (330), Expect = 1.0e-29
Identity = 63/118 (53.39%), Postives = 87/118 (73.73%), Query Frame = 1 

Query: 105 PEVGNERKEKKKGKEGKMKRRKRKNNGGREGYKRYVWKVLKQVHPEMGISGKAMLILNNL 164
           P     + EKK  KEG   ++K++     E YK Y++KVLKQVHP++G+S KAM I+N+ 
Sbjct: 20  PAEKKPKAEKKISKEGSSDKKKKRTKKSVETYKIYIFKVLKQVHPDIGVSSKAMGIMNSF 79

Query: 165 MNDMFERLAQEATQLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVS 223
           +ND+FE+LAQE+++L++Y    T++SREIQ AVRLVLPGEL KHA++EGTKAV+ + S
Sbjct: 80  INDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 137

[Close]
BLAST of ClCG01G013960 vs. Swiss-Prot
Match: H2B4_CHLRE (Histone H2B.4 OS=Chlamydomonas reinhardtii PE=1 SV=3)

HSP 1 Score: 130.6 bits (327), Expect = 2.3e-29
Identity = 71/149 (47.65%), Postives = 98/149 (65.77%), Query Frame = 1 

Query: 79  QDSEPRRAMDSTSQVTEDIDVAPKTDPEVGNERKE--KKKGKEGK---MKRRKRKNNGGR 138
           +D +P  A ++ ++     +  PK +      +KE  KK  KE K    K+ K+K     
Sbjct: 5   KDEKPATA-EAGAEAPAKAEAKPKAEKAAKKAKKEPSKKAAKEPKGDGEKKDKKKKKSAV 64

Query: 139 EGYKRYVWKVLKQVHPEMGISGKAMLILNNLMNDMFERLAQEATQLSKYTGGMTLSSREI 198
           E YK Y++KVLKQVHP+ GIS KAM I+N+ +ND+FE++A EA++LS+Y    T++SREI
Sbjct: 65  ETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREI 124

Query: 199 QGAVRLVLPGELGKHAIAEGTKAVSNYVS 223
           Q AVRLVLPGEL KHA++EGTKAV+ + S
Sbjct: 125 QTAVRLVLPGELAKHAVSEGTKAVTKFTS 152

[Close]
BLAST of ClCG01G013960 vs. TrEMBL
Match: A0A0A0LSH9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G136770 PE=3 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 2.0e-85
Identity = 175/243 (72.02%), Postives = 197/243 (81.07%), Query Frame = 1 

Query: 1   MPPRRSRRIVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAAETGGGDGGEMFQRTV 60
           MPPRRSRR+VGSVVRTTTRVVEETVQVAVVEKESQDLTQEPD A    GG  GEMF+RTV
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGG--GEMFRRTV 60

Query: 61  PVEGKTPPPEQPTTLPASQDSEPRRAMDSTSQVTEDIDVAPKTDPEV-----GNERKEKK 120
           PVE     P+QP + P S+D E RRA DSTSQ+TED  V P+ +P++     G  R++KK
Sbjct: 61  PVEEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRKGKKGRRRRKKK 120

Query: 121 KGK-----EGKMKRRKRKNNGGREGYKRYVWKVLKQVHPEMGISGKAMLILNNLMNDMFE 180
           K K     EGK + +K    GGREGYKRYV+KVLKQVHPE+GISG+AMLILNN MNDMF+
Sbjct: 121 KEKKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQ 180

Query: 181 RLAQEATQLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYDHR--RP 232
           RLA+EAT+LSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSY +R  + 
Sbjct: 181 RLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKS 240

[Close]
BLAST of ClCG01G013960 vs. TrEMBL
Match: A0A0D2SV40_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G103900 PE=3 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 2.9e-47
Identity = 114/233 (48.93%), Postives = 153/233 (65.67%), Query Frame = 1 

Query: 1   MPPRRSRRIVGSVVRTTTRVVEETVQVAVVEKESQDLT---QEPDTAAETGGGDGGEMFQ 60
           M P+R  ++V   VR+T ++V+ETVQVAV++K   D     Q+ DT       + GE   
Sbjct: 1   MAPKRRAKVV---VRSTKKIVKETVQVAVIDKTEGDNNGDQQQLDTVPLEDIEEAGERVI 60

Query: 61  RTVPVEGKTPPPEQPTTLPASQDSEPRRAMDSTSQVTEDIDVAPKTDPEVGNERKEKKKG 120
             +P++G T             + EPR+ +++  Q    +    KT+P V  E + +K+ 
Sbjct: 61  TEIPIQGSTED---------KAEKEPRK-VEAPGQKNR-VQGEEKTEP-VHEEEEPRKEE 120

Query: 121 KEGKMKRRKRKNNGGREGYKRYVWKVLKQVHPEMGISGKAMLILNNLMNDMFERLAQEAT 180
           K+GK KR K+K   G EGYK YV++VLKQVHP M IS KAM ++N+LMNDMFE++  EAT
Sbjct: 121 KKGKRKRGKKKELVGHEGYKTYVFRVLKQVHPGMAISSKAMSVINSLMNDMFEKITNEAT 180

Query: 181 QLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYDHRRPKL 231
           +LS+YT   TLSSREIQGAVRLVLPGELGKHA+AEG+KAV+NY SYD +R KL
Sbjct: 181 KLSQYTDRKTLSSREIQGAVRLVLPGELGKHAVAEGSKAVTNYASYDIKRSKL 218

[Close]
BLAST of ClCG01G013960 vs. TrEMBL
Match: A0A166DI86_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_006133 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 5.9e-45
Identity = 110/225 (48.89%), Postives = 140/225 (62.22%), Query Frame = 1 

Query: 1   MPPRRS--RRIVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAAETGGGDGGEMFQR 60
           M P++S  ++ VG+VV+TTT+V++ETVQV+V++ + +   + P T     G    E+   
Sbjct: 1   MAPKKSPKKKAVGAVVKTTTKVIQETVQVSVIQTKPKPQQETPQTENNKNGPKDIEIQDV 60

Query: 61  TVPVEGKTPPPEQPTTLPASQDSEPRRAMDSTSQVTEDIDVAPKTDPEVGNERKEKKKGK 120
           T P    TP P++ T                            KT P     +K KK   
Sbjct: 61  TTP----TPTPKKAT----------------------------KTIPTQDTAKKTKKDSA 120

Query: 121 EGKMKRRKRKNNGGREGYKRYVWKVLKQVHPEMGISGKAMLILNNLMNDMFERLAQEATQ 180
           +G  K+RKR      EGYKRYV+KVLKQVHP++GIS KAM I+NNLM DMFERLA EA +
Sbjct: 121 QGATKKRKR----SVEGYKRYVYKVLKQVHPDIGISSKAMTIVNNLMTDMFERLADEAAR 180

Query: 181 LSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSY 224
           L+KYT  MTLSSREIQGAV+LVLPGELGKHA+AEG KAV+NYV Y
Sbjct: 181 LTKYTKKMTLSSREIQGAVKLVLPGELGKHAVAEGAKAVTNYVQY 189

[Close]
BLAST of ClCG01G013960 vs. TrEMBL
Match: I1LRA5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G082700 PE=3 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.7e-44
Identity = 121/235 (51.49%), Postives = 152/235 (64.68%), Query Frame = 1 

Query: 1   MPPRRSRRIVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAAETGGGD--GGEMFQR 60
           M P+R+ ++V   VR+T +VVE +V V+VV K    LT+       T G +  G +    
Sbjct: 1   MAPKRAEKLV---VRSTKKVVESSVLVSVVGKR---LTRGKKDTQTTDGEEEVGSQEHLV 60

Query: 61  TVPVEGKTPPPEQPTTLPASQDSEPRRAMDSTSQVTEDIDVAPKTDPEVGNER-KEKK-- 120
            +P++  TP  ++ +  P S  +   +A    +  T+D  V    + E  +E  KEKK  
Sbjct: 61  VIPIQEVTPQAQKDS--PNSAITTENKAEQENN--TQDGGVENNQEEEEEHEEVKEKKNK 120

Query: 121 ----KGKEGKMKRRKRKNNGGR--EGYKRYVWKVLKQVHPEMGISGKAMLILNNLMNDMF 180
               KGK GK K+R RK  G R  EGY+RYV++VLKQVHPEMGIS K M +LNNLMNDMF
Sbjct: 121 AKTPKGKNGKEKKRGRKK-GRRSVEGYQRYVYRVLKQVHPEMGISSKCMTVLNNLMNDMF 180

Query: 181 ERLAQEATQLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYD 225
           ERLA EA++L  YTG MTLSSREIQGAVRLVLPGELGKHAIAEG KAV+NY SYD
Sbjct: 181 ERLAFEASKLKDYTGHMTLSSREIQGAVRLVLPGELGKHAIAEGVKAVNNYTSYD 224

[Close]
BLAST of ClCG01G013960 vs. TrEMBL
Match: A0A0B2QLK8_GLYSO (Histone H2B.2 OS=Glycine soja GN=glysoja_006568 PE=3 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.7e-44
Identity = 121/235 (51.49%), Postives = 152/235 (64.68%), Query Frame = 1 

Query: 1   MPPRRSRRIVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAAETGGGD--GGEMFQR 60
           M P+R+ ++V   VR+T +VVE +V V+VV K    LT+       T G +  G +    
Sbjct: 1   MAPKRAEKLV---VRSTKKVVESSVLVSVVGKR---LTRGKKDTQTTDGEEEVGSQEHLV 60

Query: 61  TVPVEGKTPPPEQPTTLPASQDSEPRRAMDSTSQVTEDIDVAPKTDPEVGNER-KEKK-- 120
            +P++  TP  ++ +  P S  +   +A    +  T+D  V    + E  +E  KEKK  
Sbjct: 61  VIPIQEVTPQAQKDS--PNSAITTENKAEQENN--TQDGGVENNQEEEEEHEEVKEKKNK 120

Query: 121 ----KGKEGKMKRRKRKNNGGR--EGYKRYVWKVLKQVHPEMGISGKAMLILNNLMNDMF 180
               KGK GK K+R RK  G R  EGY+RYV++VLKQVHPEMGIS K M +LNNLMNDMF
Sbjct: 121 AKTPKGKNGKEKKRGRKK-GRRSVEGYQRYVYRVLKQVHPEMGISSKCMTVLNNLMNDMF 180

Query: 181 ERLAQEATQLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYD 225
           ERLA EA++L  YTG MTLSSREIQGAVRLVLPGELGKHAIAEG KAV+NY SYD
Sbjct: 181 ERLAFEASKLKDYTGHMTLSSREIQGAVRLVLPGELGKHAIAEGVKAVNNYTSYD 224

[Close]
BLAST of ClCG01G013960 vs. TAIR10
Match: AT1G08170.1 (AT1G08170.1 Histone superfamily protein)

HSP 1 Score: 155.6 bits (392), Expect = 3.7e-38
Identity = 99/256 (38.67%), Postives = 138/256 (53.91%), Query Frame = 1 

Query: 1   MPPRRSRRIVGSVVRTTTRVVEETVQVAVVEK-------------ESQDLT--------- 60
           M PR+ + +    V    +VVEET++V V E+             E+QDLT         
Sbjct: 1   MAPRKPKVVS---VTKKKKVVEETIKVTVTEEGDPCVITETANDQETQDLTFSIPVGENV 60

Query: 61  -------QEPDTAAETGGGDGGEMFQRTVPVEGKTPPPEQPTTLPASQDSEPRRAMDSTS 120
                  + PD   E     G  +    +PV+ +     QP   P     EP      T 
Sbjct: 61  TTVEIPVEVPD---ERSLPVGENVTTVKIPVDDRDESSPQPPETPVEVRDEPSPQPPETP 120

Query: 121 QVTEDIDVAPKTDPEVGNERKEKKKGKEGKMKRRKRKNNGGREGYKRYVWKVLKQVHPEM 180
                   A K++  +    K +KK +  K K++K++++   + Y+RYV+KV+KQVHP++
Sbjct: 121 --------ASKSEGTLKKTDKVEKKQENKKKKKKKKRDDLAGDEYRRYVYKVMKQVHPDL 180

Query: 181 GISGKAMLILNNLMNDMFERLAQEATQLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIA 228
           GI+ KAM ++N  M DMFER+AQEA +LS YT   TLSSREI+ AVRLVLPGEL +HA+A
Sbjct: 181 GITSKAMTVVNMFMGDMFERIAQEAARLSDYTKRRTLSSREIEAAVRLVLPGELSRHAVA 240

[Close]
BLAST of ClCG01G013960 vs. TAIR10
Match: AT3G53650.1 (AT3G53650.1 Histone superfamily protein)

HSP 1 Score: 134.8 bits (338), Expect = 6.7e-32
Identity = 65/112 (58.04%), Postives = 89/112 (79.46%), Query Frame = 1 

Query: 111 RKEKKKGKEGKMKRRKRKNNGGREGYKRYVWKVLKQVHPEMGISGKAMLILNNLMNDMFE 170
           + EKK  KEG  +++K+K+    E YK Y++KVLKQVHP++GISGKAM I+N+ +ND+FE
Sbjct: 26  KAEKKITKEGGSEKKKKKSKKNIETYKIYIFKVLKQVHPDIGISGKAMGIMNSFINDIFE 85

Query: 171 RLAQEATQLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVS 223
           +LAQE+++L++Y    T++SREIQ AVRLVLPGEL KHA++EGTKAV+ + S
Sbjct: 86  KLAQESSRLARYNKKPTITSREIQTAVRLVLPGELSKHAVSEGTKAVTKFTS 137

[Close]
BLAST of ClCG01G013960 vs. TAIR10
Match: AT5G02570.1 (AT5G02570.1 Histone superfamily protein)

HSP 1 Score: 132.5 bits (332), Expect = 3.3e-31
Identity = 68/131 (51.91%), Postives = 96/131 (73.28%), Query Frame = 1 

Query: 99  VAPKTDPEVGNE----RKEKKKGKEG---KMKRRKRKNNGGREGYKRYVWKVLKQVHPEM 158
           +APK + +   +    + EKK  KEG   ++ ++K+K     E YK Y++KVLKQVHP++
Sbjct: 1   MAPKAEKKPAEKAPAPKAEKKIAKEGGTSEIVKKKKKTKKSTETYKIYIFKVLKQVHPDI 60

Query: 159 GISGKAMLILNNLMNDMFERLAQEATQLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIA 218
           GISGKAM I+N+ +ND+FE+LAQE+++L++Y    T++SREIQ AVRLVLPGEL KHA++
Sbjct: 61  GISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVS 120

Query: 219 EGTKAVSNYVS 223
           EGTKAV+ + S
Sbjct: 121 EGTKAVTKFTS 131

[Close]
BLAST of ClCG01G013960 vs. TAIR10
Match: AT2G37470.1 (AT2G37470.1 Histone superfamily protein)

HSP 1 Score: 129.8 bits (325), Expect = 2.2e-30
Identity = 64/113 (56.64%), Postives = 89/113 (78.76%), Query Frame = 1 

Query: 111 RKEKKKGKE-GKMKRRKRKNNGGREGYKRYVWKVLKQVHPEMGISGKAMLILNNLMNDMF 170
           + EKK  K+ G  +++K+K+    E YK Y++KVLKQVHP++GISGKAM I+N+ +ND+F
Sbjct: 26  KAEKKISKDAGGSEKKKKKSKKSVETYKIYIFKVLKQVHPDVGISGKAMGIMNSFINDIF 85

Query: 171 ERLAQEATQLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVS 223
           E+LAQE+++L++Y    T++SREIQ AVRLVLPGEL KHA++EGTKAV+ + S
Sbjct: 86  EKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 138

[Close]
BLAST of ClCG01G013960 vs. TAIR10
Match: AT2G28720.1 (AT2G28720.1 Histone superfamily protein)

HSP 1 Score: 129.0 bits (323), Expect = 3.7e-30
Identity = 66/133 (49.62%), Postives = 93/133 (69.92%), Query Frame = 1 

Query: 100 APKTDPEVGNERKEKKKGKEGK----------MKRRKRKNNGGREGYKRYVWKVLKQVHP 159
           AP  + +V  +   +KK K GK          ++++K++     E YK Y++KVLKQVHP
Sbjct: 18  APAEEEKVAEKAPAEKKPKAGKKLPKEAVTGGVEKKKKRVKKSTETYKIYIFKVLKQVHP 77

Query: 160 EMGISGKAMLILNNLMNDMFERLAQEATQLSKYTGGMTLSSREIQGAVRLVLPGELGKHA 219
           ++GIS KAM I+N+ +ND+FE+LAQEA++L++Y    T++SREIQ AVRLVLPGEL KHA
Sbjct: 78  DIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGELAKHA 137

Query: 220 IAEGTKAVSNYVS 223
           ++EGTKAV+ + S
Sbjct: 138 VSEGTKAVTKFTS 150

[Close]
BLAST of ClCG01G013960 vs. NCBI nr
Match: gi|659071869|ref|XP_008462313.1| (PREDICTED: histone H2B type 1-A-like [Cucumis melo])

HSP 1 Score: 324.7 bits (831), Expect = 1.3e-85
Identity = 179/239 (74.90%), Postives = 201/239 (84.10%), Query Frame = 1 

Query: 1   MPPRRSRRIVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAAETGGGDGGEMFQRTV 60
           MPPRRSRR+VGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTA ET  G GGEMF+R V
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTA-ETADG-GGEMFRRPV 60

Query: 61  PVEG-KTP-PPEQPTTLPASQDSEPRRAMDSTSQVTEDIDVAPKTDPEV------GNERK 120
           PVE  K+P PPEQP T P S++ E RRA DSTSQ+TED  V P+ +PEV      G  +K
Sbjct: 61  PVEEIKSPDPPEQPITHPVSENFEVRRATDSTSQLTEDTAVTPEMEPEVQKGKKGGRRKK 120

Query: 121 EKKKGKEGKMKRRKRKNNGG--REGYKRYVWKVLKQVHPEMGISGKAMLILNNLMNDMFE 180
           +K+K +E K  +R+ KN+ G  REGYKRYV+KVLKQVHPE+GISG+AMLILNN MNDMF+
Sbjct: 121 KKEKKREIKEGKRRSKNSSGSGREGYKRYVFKVLKQVHPEIGISGQAMLILNNFMNDMFQ 180

Query: 181 RLAQEATQLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYDHRRPK 230
           RLA+EAT+LSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSY +R  K
Sbjct: 181 RLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRTTK 237

[Close]
BLAST of ClCG01G013960 vs. NCBI nr
Match: gi|700209774|gb|KGN64870.1| (hypothetical protein Csa_1G136770 [Cucumis sativus])

HSP 1 Score: 323.6 bits (828), Expect = 2.9e-85
Identity = 175/243 (72.02%), Postives = 197/243 (81.07%), Query Frame = 1 

Query: 1   MPPRRSRRIVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAAETGGGDGGEMFQRTV 60
           MPPRRSRR+VGSVVRTTTRVVEETVQVAVVEKESQDLTQEPD A    GG  GEMF+RTV
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGG--GEMFRRTV 60

Query: 61  PVEGKTPPPEQPTTLPASQDSEPRRAMDSTSQVTEDIDVAPKTDPEV-----GNERKEKK 120
           PVE     P+QP + P S+D E RRA DSTSQ+TED  V P+ +P++     G  R++KK
Sbjct: 61  PVEEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRKGKKGRRRRKKK 120

Query: 121 KGK-----EGKMKRRKRKNNGGREGYKRYVWKVLKQVHPEMGISGKAMLILNNLMNDMFE 180
           K K     EGK + +K    GGREGYKRYV+KVLKQVHPE+GISG+AMLILNN MNDMF+
Sbjct: 121 KEKKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQ 180

Query: 181 RLAQEATQLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYDHR--RP 232
           RLA+EAT+LSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSY +R  + 
Sbjct: 181 RLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKS 240

[Close]
BLAST of ClCG01G013960 vs. NCBI nr
Match: gi|778664983|ref|XP_011648456.1| (PREDICTED: histone H2B [Cucumis sativus])

HSP 1 Score: 308.1 bits (788), Expect = 1.3e-80
Identity = 168/233 (72.10%), Postives = 186/233 (79.83%), Query Frame = 1 

Query: 1   MPPRRSRRIVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAAETGGGDGGEMFQRTV 60
           MPPRRSRR+VGSVVRTTTRVVEETVQVAVVEKESQDLTQEPD A    GG  GEMF+RTV
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGG--GEMFRRTV 60

Query: 61  PVEGKTPPPEQPTTLPASQDSEPRRAMDSTSQVTEDIDVAPKTDPEVGNERKEKKKGKEG 120
           PVE     P+QP + P S+D E RRA DSTSQ+TED                 K++ KEG
Sbjct: 61  PVEEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDT---------------AKREIKEG 120

Query: 121 KMKRRKRKNNGGREGYKRYVWKVLKQVHPEMGISGKAMLILNNLMNDMFERLAQEATQLS 180
           K + +K    GGREGYKRYV+KVLKQVHPE+GISG+AMLILNN MNDMF+RLA+EAT+LS
Sbjct: 121 KRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRLAEEATKLS 180

Query: 181 KYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYDHR--RPKLP 232
           KYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSY +R  + KLP
Sbjct: 181 KYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKSKLP 216

[Close]
BLAST of ClCG01G013960 vs. NCBI nr
Match: gi|1021558250|ref|XP_016170430.1| (PREDICTED: histone H2B-like [Arachis ipaensis])

HSP 1 Score: 199.1 bits (505), Expect = 8.3e-48
Identity = 116/238 (48.74%), Postives = 163/238 (68.49%), Query Frame = 1 

Query: 1   MPPRRSRRIVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAAETGGGDGGEMFQRTV 60
           M P+R +++V   V++T +VV+E+VQV++V   S+   +  +   +TG    GE   R +
Sbjct: 1   MGPKRGQKVV---VKSTRKVVQESVQVSIVGSSSKRTRRGNNKDIQTGDEVVGEENVRII 60

Query: 61  PVEGKTPPPEQP---TTLPASQDSEPRRAMDSTSQVTEDID-----VAPKTDP-EVGNER 120
           PV+  TP P+     TT+   QD +  +  ++ +Q  ++ID     V+ K +P E  ++ 
Sbjct: 61  PVQEGTPQPKDASTTTTVTTQQDDQGEQEHNAETQ-EQNIDTTATAVSHKEEPKEPSSKE 120

Query: 121 KEKKKGK-----EGKMKRRKRKNNGGREGYKRYVWKVLKQVHPEMGISGKAMLILNNLMN 180
            ++KK K     +GK K+++RK + G EGYKRYV+ VLKQVHP+MGIS +AM +LNNLM 
Sbjct: 121 DDEKKAKTHERNDGKGKKKRRKRSSG-EGYKRYVYMVLKQVHPDMGISSQAMTVLNNLMG 180

Query: 181 DMFERLAQEATQLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYD 225
           DMFERLA EA++L  YTG MTLSSREIQGAV+LVLPGELGKHAIAEG KAV+NY+S+D
Sbjct: 181 DMFERLADEASKLKTYTGHMTLSSREIQGAVKLVLPGELGKHAIAEGAKAVTNYISHD 233

[Close]
BLAST of ClCG01G013960 vs. NCBI nr
Match: gi|823172017|ref|XP_012484989.1| (PREDICTED: histone H2B type 1-P-like [Gossypium raimondii])

HSP 1 Score: 196.8 bits (499), Expect = 4.1e-47
Identity = 114/233 (48.93%), Postives = 153/233 (65.67%), Query Frame = 1 

Query: 1   MPPRRSRRIVGSVVRTTTRVVEETVQVAVVEKESQDLT---QEPDTAAETGGGDGGEMFQ 60
           M P+R  ++V   VR+T ++V+ETVQVAV++K   D     Q+ DT       + GE   
Sbjct: 1   MAPKRRAKVV---VRSTKKIVKETVQVAVIDKTEGDNNGDQQQLDTVPLEDIEEAGERVI 60

Query: 61  RTVPVEGKTPPPEQPTTLPASQDSEPRRAMDSTSQVTEDIDVAPKTDPEVGNERKEKKKG 120
             +P++G T             + EPR+ +++  Q    +    KT+P V  E + +K+ 
Sbjct: 61  TEIPIQGSTED---------KAEKEPRK-VEAPGQKNR-VQGEEKTEP-VHEEEEPRKEE 120

Query: 121 KEGKMKRRKRKNNGGREGYKRYVWKVLKQVHPEMGISGKAMLILNNLMNDMFERLAQEAT 180
           K+GK KR K+K   G EGYK YV++VLKQVHP M IS KAM ++N+LMNDMFE++  EAT
Sbjct: 121 KKGKRKRGKKKELVGHEGYKTYVFRVLKQVHPGMAISSKAMSVINSLMNDMFEKITNEAT 180

Query: 181 QLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYDHRRPKL 231
           +LS+YT   TLSSREIQGAVRLVLPGELGKHA+AEG+KAV+NY SYD +R KL
Sbjct: 181 KLSQYTDRKTLSSREIQGAVRLVLPGELGKHAVAEGSKAVTNYASYDIKRSKL 218

The following BLAST results are available for this feature:
BLAST of ClCG01G013960 vs. Swiss-Prot
Match NameE-valueIdentityDescription
H2B2_ARATH6.5e-3738.67Histone H2B.2 OS=Arabidopsis thaliana GN=At1g08170 PE=2 SV=1[more]
H2B8_ARATH1.2e-3058.04Histone H2B.8 OS=Arabidopsis thaliana GN=At3g53650 PE=1 SV=3[more]
H2B9_ARATH5.9e-3051.91Histone H2B.9 OS=Arabidopsis thaliana GN=At5g02570 PE=1 SV=3[more]
H2B3_MEDTR1.0e-2953.39Probable histone H2B.3 OS=Medicago truncatula PE=3 SV=3[more]
H2B4_CHLRE2.3e-2947.65Histone H2B.4 OS=Chlamydomonas reinhardtii PE=1 SV=3[more]
BLAST of ClCG01G013960 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LSH9_CUCSA2.0e-8572.02Uncharacterized protein OS=Cucumis sativus GN=Csa_1G136770 PE=3 SV=1[more]
A0A0D2SV40_GOSRA2.9e-4748.93Uncharacterized protein OS=Gossypium raimondii GN=B456_006G103900 PE=3 SV=1[more]
A0A166DI86_DAUCA5.9e-4548.89Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_006133 PE=4 SV=1[more]
I1LRA5_SOYBN1.7e-4451.49Uncharacterized protein OS=Glycine max GN=GLYMA_12G082700 PE=3 SV=1[more]
A0A0B2QLK8_GLYSO1.7e-4451.49Histone H2B.2 OS=Glycine soja GN=glysoja_006568 PE=3 SV=1[more]
BLAST of ClCG01G013960 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G08170.13.7e-3838.67 Histone superfamily protein[more]
AT3G53650.16.7e-3258.04 Histone superfamily protein[more]
AT5G02570.13.3e-3151.91 Histone superfamily protein[more]
AT2G37470.12.2e-3056.64 Histone superfamily protein[more]
AT2G28720.13.7e-3049.62 Histone superfamily protein[more]
BLAST of ClCG01G013960 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659071869|ref|XP_008462313.1|1.3e-8574.90PREDICTED: histone H2B type 1-A-like [Cucumis melo][more]
gi|700209774|gb|KGN64870.1|2.9e-8572.02hypothetical protein Csa_1G136770 [Cucumis sativus][more]
gi|778664983|ref|XP_011648456.1|1.3e-8072.10PREDICTED: histone H2B [Cucumis sativus][more]
gi|1021558250|ref|XP_016170430.1|8.3e-4848.74PREDICTED: histone H2B-like [Arachis ipaensis][more]
gi|823172017|ref|XP_012484989.1|4.1e-4748.93PREDICTED: histone H2B type 1-P-like [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000558Histone_H2B
IPR007125Histone_H2A/H2B/H3
IPR009072Histone-fold
Vocabulary: Cellular Component
TermDefinition
GO:0000786nucleosome
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006334 nucleosome assembly
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
cellular_component GO:0000788 nuclear nucleosome
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G013960.1ClCG01G013960.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000558Histone H2BPRINTSPR00621HISTONEH2Bcoord: 177..194
score: 1.6E-33coord: 194..207
score: 1.6E-33coord: 136..154
score: 1.6E-33coord: 207..220
score: 1.6E-33coord: 155..175
score: 1.6
IPR000558Histone H2BPANTHERPTHR23428HISTONE H2Bcoord: 112..220
score: 3.4
IPR000558Histone H2BSMARTSM00427h2b3coord: 123..222
score: 2.7
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 106..199
score: 3.3
IPR009072Histone-foldGENE3DG3DSA:1.10.20.10coord: 109..222
score: 2.8
IPR009072Histone-foldunknownSSF47113Histone-foldcoord: 109..222
score: 1.51