CmoCh12G008190 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh12G008190
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Histone H2B.2
Location	Cmo_Chr12 : 7373789 .. 7375363 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGCCGAGGCGATCCCGTAGAATTGTCGGTTCTGTCGTCCGGACAACCACCAAGGTAGTGGAAGAAACTGTGCATGTGGCTGTGGTGGAGGGAGAGAGCCAGGATGTTACTCAAGAGCCAGCAACGGCGGAAACCGGCGGCGATGGAGTGTTTCGGAGGACTATTCCGGTGGAAGACCCCCAAACTTCGCCGGTGTGGGGAGATGTCAAGCTGACAAGGCCTGTAGATTCCACCTCAGAGGTCACGGAGGACAAGGATGTGACGGGGAAGATGGAATCTAAAGCCAGGGATGGTAGTAATTTAACATTATAATAATGCTAATAATTTGTTTACATGAAGTCTTAACCTTTTGTTTTGCAGGTGTAGTTAGGTATAACGACTCTCTATAATAGTTAGTAGGGTACGCTTCATTTTGAGTATAAACTCTCATGTCTTTGCTTTGAGTTTTTTTGAAAGGTCTCGTACCAATGGTAATGTATTTCTTACCTATAAAGCAATGACCATTTGCCAACGTGAGACTCTCTCCTAACAATTTTTCTCTCGAACAAAGTAGATTATAGAGCCTCCCCATGTCTATGGAGTTCTCGAACAATCTCACCTAATCGAGATTCGACTCCTCCTCTGGAGTTTTCGAATAAAGCACCCCCCTTTGTTCAACACTTCAGTCAATTTTTAGCACACCTTCGAGAGCCTCCCTCGACTCTTTCAGGAGCCCTTCATCAGCCTCCCCTAATCGAGGCTTGACTCCTTCTCTGGAGTCTTCAAACAAAGTATCCCTTTGTTCTTTACCCCACTTTCAAGGCCTTTTGAGGCCTATGGAGCCTTCCATCAGCCTCCCCTAATCGGCTCGACTCCTTCTTTGGAGTCTTCGAACAAAGTACACCATTTATTCGACATTTGAGTCACTTTTGACTAAGGCTCACACTTTCGGATTCTAGTGACAATTCTATTGACATGACTAAGTTAAGGGCATGACTGTGATGAGCCTAAACTCTCTTCCTTTGGGTTTCTTAGATTTCATCTCCAATCCCAAAAAGATTTCATACTAATGGAGATTATTCCTTATCTATAAATCCATGATCTTAGACAATATGGGACCCCTTCCCAACCATTCTCGACCATTCTCGACAGGTGTTAGAGAAAGCCGAAAGAAAAACGAGAAGAAAAAGGAGAGGGAAGTAAAGAAGAGGAGAAGCGGCGGGGGAAGAGAAGGGTACAAGAGGTACGTGTTCAAGGTGCTGAAGCAGGTGCATCCGGAGGTGGGGATATCAGGGCAAGCCATGGTGATTTTGAACAATTTGATGAACGACATGTTCGAGAGGCTAGCTGAGGAGGCCACAAAGCTCTCCAAATACACAGGCAAGCCCTAATAATATTCAAAATAACTCCTTAACAACGACCAATTCTAACAATGTTTGGATTATGATAGGCGGGCAGACGCTGTCATCAAGGGAGATACAGGGGGCGGTGAAGCTGGTTTTCCCGGGAGAGCTAGGGAAGCACGCCGTTGCCGAGGGGACTAAAGCGGTGTCAACTTATGTCTCTTATGATCATAGGAGAACCCAACCATAG

mRNA sequence

ATGCCGCCGAGGCGATCCCGTAGAATTGTCGGTTCTGTCGTCCGGACAACCACCAAGGTAGTGGAAGAAACTGTGCATGTGGCTGTGGTGGAGGGAGAGAGCCAGGATGTTACTCAAGAGCCAGCAACGGCGGAAACCGGCGGCGATGGAGTGTTTCGGAGGACTATTCCGGTGGAAGACCCCCAAACTTCGCCGGTGTGGGGAGATGTCAAGCTGACAAGGCCTGTAGATTCCACCTCAGAGGTCACGGAGGACAAGGATGTGACGGGGAAGATGGAATCTAAAGCCAGGGATGGTAGTGCTGAAGCAGGTGCATCCGGAGGTGGGGATATCAGGGCAAGCCATGGTGATTTTGAACAATTTGATGAACGACATCTGAGGAGGCCACAAAGCTCTCCAAATACACAGGCAAGCCCTAATAATATTCAAAATAACTCCTTAACAACGACCAATTCTAACAATGTTTGGATTATGATAGGCGGGCAGACGCTGTCATCAAGGGAGATACAGGGGGCGGTGAAGCTGGTTTTCCCGGGAGAGCTAGGGAAGCACGCCGTTGCCGAGGGGACTAAAGCGGTGTCAACTTATGTCTCTTATGATCATAGGAGAACCCAACCATAG

Coding sequence (CDS)

ATGCCGCCGAGGCGATCCCGTAGAATTGTCGGTTCTGTCGTCCGGACAACCACCAAGGTAGTGGAAGAAACTGTGCATGTGGCTGTGGTGGAGGGAGAGAGCCAGGATGTTACTCAAGAGCCAGCAACGGCGGAAACCGGCGGCGATGGAGTGTTTCGGAGGACTATTCCGGTGGAAGACCCCCAAACTTCGCCGGTGTGGGGAGATGTCAAGCTGACAAGGCCTGTAGATTCCACCTCAGAGGTCACGGAGGACAAGGATGTGACGGGGAAGATGGAATCTAAAGCCAGGGATGGTAGTGCTGAAGCAGGTGCATCCGGAGGTGGGGATATCAGGGCAAGCCATGGTGATTTTGAACAATTTGATGAACGACATCTGAGGAGGCCACAAAGCTCTCCAAATACACAGGCAAGCCCTAATAATATTCAAAATAACTCCTTAACAACGACCAATTCTAACAATGTTTGGATTATGATAGGCGGGCAGACGCTGTCATCAAGGGAGATACAGGGGGCGGTGAAGCTGGTTTTCCCGGGAGAGCTAGGGAAGCACGCCGTTGCCGAGGGGACTAAAGCGGTGTCAACTTATGTCTCTTATGATCATAGGAGAACCCAACCATAG

Homology

[Close]

BLAST of CmoCh12G008190 vs. Swiss-Prot
Match: H2B2_ARATH (Histone H2B.2 OS=Arabidopsis thaliana GN=At1g08170 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.2e-09
Identity = 29/42 (69.05%), Postives = 36/42 (85.71%), Query Frame = 1


Query: 162 QTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVSYDHRR 204
           +TLSSREI+ AV+LV PGEL +HAVAEG+KAVS +V YD R+
Sbjct: 201 RTLSSREIEAAVRLVLPGELSRHAVAEGSKAVSNFVGYDSRK 242

[Close]

BLAST of CmoCh12G008190 vs. Swiss-Prot
Match: H2B2_CAEEL (Histone H2B 2 OS=Caenorhabditis elegans GN=his-4 PE=1 SV=3)

HSP 1 Score: 55.8 bits (133), Expect = 6.3e-07
Identity = 26/36 (72.22%), Postives = 31/36 (86.11%), Query Frame = 1


Query: 163 TLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS 199
           T+SSREIQ AV+L+ PGEL KHAV+EGTKAV+ Y S
Sbjct: 86  TISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTS 121

[Close]

BLAST of CmoCh12G008190 vs. Swiss-Prot
Match: H2B3_CAEEL (Probable histone H2B 3 OS=Caenorhabditis elegans GN=his-41 PE=3 SV=3)

HSP 1 Score: 55.8 bits (133), Expect = 6.3e-07
Identity = 26/36 (72.22%), Postives = 31/36 (86.11%), Query Frame = 1


Query: 163 TLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS 199
           T+SSREIQ AV+L+ PGEL KHAV+EGTKAV+ Y S
Sbjct: 86  TISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTS 121

[Close]

BLAST of CmoCh12G008190 vs. Swiss-Prot
Match: H2B1_CAEEL (Histone H2B 1 OS=Caenorhabditis elegans GN=his-11 PE=1 SV=4)

HSP 1 Score: 55.8 bits (133), Expect = 6.3e-07
Identity = 26/36 (72.22%), Postives = 31/36 (86.11%), Query Frame = 1


Query: 163 TLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS 199
           T+SSREIQ AV+L+ PGEL KHAV+EGTKAV+ Y S
Sbjct: 85  TISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTS 120

[Close]

BLAST of CmoCh12G008190 vs. Swiss-Prot
Match: H2B4_CAEEL (Probable histone H2B 4 OS=Caenorhabditis elegans GN=his-48 PE=3 SV=3)

HSP 1 Score: 55.8 bits (133), Expect = 6.3e-07
Identity = 26/36 (72.22%), Postives = 31/36 (86.11%), Query Frame = 1


Query: 163 TLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS 199
           T+SSREIQ AV+L+ PGEL KHAV+EGTKAV+ Y S
Sbjct: 86  TISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTS 121

[Close]

BLAST of CmoCh12G008190 vs. TrEMBL
Match: A0A0A0LSH9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G136770 PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.5e-36
Identity = 117/238 (49.16%), Postives = 141/238 (59.24%), Query Frame = 1


Query: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAET--GGDGVFRRTIPV 60
           MPPRRSRR+VGSVVRTTT+VVEETV VAVVE ESQD+TQEP  AET  GG  +FRRT+PV
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV 60

Query: 61  ED-------PQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKAR-------------- 120
           E+       P + PV  D +L R  DSTS++TED  VT +ME K R              
Sbjct: 61  EEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRKGKKGRRRRKKKKE 120

Query: 121 ------DGSAEAGASGGGDIRASHGDFEQFDERHLRRPQSSPNTQAS--PNNIQNNSL-- 180
                 +G   +  SGGG  R  +  +  F       P+   + QA    NN  N+    
Sbjct: 121 KKREIKEGKRRSKKSGGGGGREGYKRY-VFKVLKQVHPEVGISGQAMLILNNFMNDMFQR 180

Query: 181 TTTNSNNVWIMIGGQTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVSYDHRRTQ 206
               +  +    GG TLSSREIQGAV+LV PGELGKHA+AEGTKAVS YVSY +R T+
Sbjct: 181 LAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATK 237

[Close]

BLAST of CmoCh12G008190 vs. TrEMBL
Match: A0A166DI86_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_006133 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.0e-11
Identity = 70/214 (32.71%), Postives = 110/214 (51.40%), Query Frame = 1


Query: 1   MPPRRS--RRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRTIPV 60
           M P++S  ++ VG+VV+TTTKV++ETV V+V++ + +   + P T E   +G   + I +
Sbjct: 1   MAPKKSPKKKAVGAVVKTTTKVIQETVQVSVIQTKPKPQQETPQT-ENNKNGP--KDIEI 60

Query: 61  EDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARDGSAEAGASGGGDIRASHGDF 120
           +D  T+P     K T+ + +     + K  + +  +K R  S E               +
Sbjct: 61  QDV-TTPTPTPKKATKTIPTQDTAKKTKKDSAQGATKKRKRSVEG--------------Y 120

Query: 121 EQFDERHLRRPQSSPNTQASPNNIQNNSLT------TTNSNNVWIMIGGQTLSSREIQGA 180
           +++  + L++        +    I NN +T         +  +       TLSSREIQGA
Sbjct: 121 KRYVYKVLKQVHPDIGISSKAMTIVNNLMTDMFERLADEAARLTKYTKKMTLSSREIQGA 180

Query: 181 VKLVFPGELGKHAVAEGTKAVSTYVSYDHRRTQP 207
           VKLV PGELGKHAVAEG KAV+ YV Y    ++P
Sbjct: 181 VKLVLPGELGKHAVAEGAKAVTNYVQYASGPSKP 196

[Close]

BLAST of CmoCh12G008190 vs. TrEMBL
Match: A0A0K9S0F7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_008320 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 7.2e-10
Identity = 76/231 (32.90%), Postives = 113/231 (48.92%), Query Frame = 1


Query: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAE-TGGDGVFRRTIPVE 60
           M PR+ +     VV+TTTKVV+ETV V  V G  +D  Q  A  E T       ++IP+E
Sbjct: 1   MAPRKKK-----VVKTTTKVVQETVEVVSVIGSQED--QALARPEVTEEQTSVTKSIPIE 60

Query: 61  DPQTSPVWGDV-KLTRP-------------------VDSTSEVTEDKDVTGKMESKARDG 120
           D +T     ++ KL  P                   VD  S   E ++V    + KA   
Sbjct: 61  DQETETQDLEIEKLPTPPREEAPPRKEEYEGQARTKVDGPSAQNEAQEV---KKEKAAKT 120

Query: 121 SAEAGASGGGDIRASHGD-FEQFDERHLRRPQSSPNTQASPNNIQNNSLT------TTNS 180
           S      G   +R   G+ ++++  R +++        +    + NN +T         +
Sbjct: 121 STTGRKRGKKRMRGEMGEGYKRYVFRVMKQVHPGMGITSGAMTVINNFMTDMFERLAGEA 180

Query: 181 NNVWIMIGGQTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVSYDHRR 204
           + +      QT+++REIQGAVKLV PGELGKHAVAEG+KAV+ YV+YD ++
Sbjct: 181 SKLSTYSKKQTMTAREIQGAVKLVLPGELGKHAVAEGSKAVTNYVTYDSKK 221

[Close]

BLAST of CmoCh12G008190 vs. TrEMBL
Match: A0A067EYZ1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g048093mg PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.3e-08
Identity = 82/265 (30.94%), Postives = 119/265 (44.91%), Query Frame = 1


Query: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGE-----------------SQDVTQEP-- 60
           MPPRRS R+V      T KVVEETV V+VV  +                 S+ +T E   
Sbjct: 1   MPPRRSARVV-----LTKKVVEETVQVSVVNEKKKKGKREIAIHSEETLPSKTITVEDKE 60

Query: 61  ----ATAETGGDGVFRRTIPVEDPQTS-------PVWGDVKLT------RPVDSTSEVTE 120
                T E   +     T P  +P +S       P   + K T       P    +   E
Sbjct: 61  EGKHTTVEVPIEEPEPPTEPEAEPSSSVAAEAATPAKKEEKKTSIETSPEPEHDVAASAE 120

Query: 121 DKDVTGKMESKARDGSAEAGASGGGDIRASHGDFEQFDERHLRRPQSSPNT--------- 180
            ++   + ++K ++   EA  +   + RA+H        +  +R + +            
Sbjct: 121 QEEPPEQSKNKEKEKPNEAQKTAQQEARAAHEKPGSKKRKRRKRNEGTGEEYKTYVFRVL 180

Query: 181 -QASPNN-IQNNSLTTTNS--NNVWIMIGGQ-----------TLSSREIQGAVKLVFPGE 206
            Q  P   I + ++T  N+  N+++  I G+           T+SSREIQGAVKLV PGE
Sbjct: 181 KQVHPGMAISSKAMTVINNLMNDMFERIAGEAATLSKHCHRTTMSSREIQGAVKLVLPGE 240

[Close]

BLAST of CmoCh12G008190 vs. TrEMBL
Match: A0A072VBE2_MEDTR (Core histone H2A/H2B/H3/H4 OS=Medicago truncatula GN=MTR_2g084480 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.3e-08
Identity = 72/228 (31.58%), Postives = 107/228 (46.93%), Query Frame = 1


Query: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDG------VFRR 60
           M P+ ++++V   VR+T KVV+E+V V+VV    +         E   D          R
Sbjct: 1   MAPKSAKKVV---VRSTRKVVQESVQVSVVSSHKRSTRGNNKDVEIDKDAGNATQQEHVR 60

Query: 61  TIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVT------------GKMESKARDGSAE 120
            IPV++  +         T     TSE T +++ T               E + +  + E
Sbjct: 61  IIPVQEVTSQTKEDTNTNTNTTTVTSEDTTNQENTPNDATMEPKTPLSNKEQEKKVRTKE 120

Query: 121 AGASGGGDIRASHG-----DFEQFDERHLRR--PQSSPNTQASP--NNIQNNSLT--TTN 180
            G  G G  +   G      ++++  R L++  PQ   ++QA    NN+ N+        
Sbjct: 121 GGNDGKGKRKKKRGRRMGEGYQRYVYRVLKQVHPQMGISSQAMTILNNLMNDMFEKLADE 180

Query: 181 SNNVWIMIGGQTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVSY 200
           +  +       TL+SREIQGAVKLV PGELGKHA+AEG KAV+ YVSY
Sbjct: 181 AAKLTAYTKHMTLTSREIQGAVKLVLPGELGKHAIAEGAKAVTNYVSY 225

[Close]

BLAST of CmoCh12G008190 vs. TAIR10
Match: AT1G08170.1 (AT1G08170.1 Histone superfamily protein)

HSP 1 Score: 62.8 bits (151), Expect = 2.9e-10
Identity = 29/42 (69.05%), Postives = 36/42 (85.71%), Query Frame = 1


Query: 162 QTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVSYDHRR 204
           +TLSSREI+ AV+LV PGEL +HAVAEG+KAVS +V YD R+
Sbjct: 201 RTLSSREIEAAVRLVLPGELSRHAVAEGSKAVSNFVGYDSRK 242

[Close]

BLAST of CmoCh12G008190 vs. TAIR10
Match: AT1G07790.1 (AT1G07790.1 Histone superfamily protein)

HSP 1 Score: 53.5 bits (127), Expect = 1.8e-07
Identity = 25/36 (69.44%), Postives = 31/36 (86.11%), Query Frame = 1


Query: 163 TLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS 199
           T++SREIQ AV+LV PGEL KHAV+EGTKAV+ + S
Sbjct: 112 TITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 147

[Close]

BLAST of CmoCh12G008190 vs. TAIR10
Match: AT2G37470.1 (AT2G37470.1 Histone superfamily protein)

HSP 1 Score: 53.5 bits (127), Expect = 1.8e-07
Identity = 25/36 (69.44%), Postives = 31/36 (86.11%), Query Frame = 1


Query: 163 TLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS 199
           T++SREIQ AV+LV PGEL KHAV+EGTKAV+ + S
Sbjct: 103 TITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 138

[Close]

BLAST of CmoCh12G008190 vs. TAIR10
Match: AT2G28720.1 (AT2G28720.1 Histone superfamily protein)

HSP 1 Score: 53.5 bits (127), Expect = 1.8e-07
Identity = 25/36 (69.44%), Postives = 31/36 (86.11%), Query Frame = 1


Query: 163 TLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS 199
           T++SREIQ AV+LV PGEL KHAV+EGTKAV+ + S
Sbjct: 115 TITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 150

[Close]

BLAST of CmoCh12G008190 vs. TAIR10
Match: AT3G46030.1 (AT3G46030.1 Histone superfamily protein)

HSP 1 Score: 53.5 bits (127), Expect = 1.8e-07
Identity = 25/36 (69.44%), Postives = 31/36 (86.11%), Query Frame = 1


Query: 163 TLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS 199
           T++SREIQ AV+LV PGEL KHAV+EGTKAV+ + S
Sbjct: 109 TITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 144

[Close]

BLAST of CmoCh12G008190 vs. NCBI nr
Match: gi|700209774|gb|KGN64870.1| (hypothetical protein Csa_1G136770 [Cucumis sativus])

HSP 1 Score: 161.0 bits (406), Expect = 2.2e-36
Identity = 117/238 (49.16%), Postives = 141/238 (59.24%), Query Frame = 1


Query: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAET--GGDGVFRRTIPV 60
           MPPRRSRR+VGSVVRTTT+VVEETV VAVVE ESQD+TQEP  AET  GG  +FRRT+PV
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV 60

Query: 61  ED-------PQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKAR-------------- 120
           E+       P + PV  D +L R  DSTS++TED  VT +ME K R              
Sbjct: 61  EEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRKGKKGRRRRKKKKE 120

Query: 121 ------DGSAEAGASGGGDIRASHGDFEQFDERHLRRPQSSPNTQAS--PNNIQNNSL-- 180
                 +G   +  SGGG  R  +  +  F       P+   + QA    NN  N+    
Sbjct: 121 KKREIKEGKRRSKKSGGGGGREGYKRY-VFKVLKQVHPEVGISGQAMLILNNFMNDMFQR 180

Query: 181 TTTNSNNVWIMIGGQTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVSYDHRRTQ 206
               +  +    GG TLSSREIQGAV+LV PGELGKHA+AEGTKAVS YVSY +R T+
Sbjct: 181 LAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATK 237

[Close]

BLAST of CmoCh12G008190 vs. NCBI nr
Match: gi|778664983|ref|XP_011648456.1| (PREDICTED: histone H2B [Cucumis sativus])

HSP 1 Score: 160.6 bits (405), Expect = 2.9e-36
Identity = 115/218 (52.75%), Postives = 138/218 (63.30%), Query Frame = 1


Query: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAET--GGDGVFRRTIPV 60
           MPPRRSRR+VGSVVRTTT+VVEETV VAVVE ESQD+TQEP  AET  GG  +FRRT+PV
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAETPDGGGEMFRRTVPV 60

Query: 61  ED-------PQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARDGSAEAGASGGGDI 120
           E+       P + PV  D +L R  DSTS++TED   T K E K  +G   +  SGGG  
Sbjct: 61  EEIKAHPQQPISHPVSEDFELRRATDSTSQLTED---TAKREIK--EGKRRSKKSGGGGG 120

Query: 121 RASHGDFEQFDERHLRRPQSSPNTQAS--PNNIQNNSL--TTTNSNNVWIMIGGQTLSSR 180
           R  +  +  F       P+   + QA    NN  N+        +  +    GG TLSSR
Sbjct: 121 REGYKRY-VFKVLKQVHPEVGISGQAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSR 180

Query: 181 EIQGAVKLVFPGELGKHAVAEGTKAVSTYVSYDHRRTQ 206
           EIQGAV+LV PGELGKHA+AEGTKAVS YVSY +R T+
Sbjct: 181 EIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATK 212

[Close]

BLAST of CmoCh12G008190 vs. NCBI nr
Match: gi|659071869|ref|XP_008462313.1| (PREDICTED: histone H2B type 1-A-like [Cucumis melo])

HSP 1 Score: 141.7 bits (356), Expect = 1.4e-30
Identity = 110/240 (45.83%), Postives = 135/240 (56.25%), Query Frame = 1


Query: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAET--GGDGVFRRTIPV 60
           MPPRRSRR+VGSVVRTTT+VVEETV VAVVE ESQD+TQEP TAET  GG  +FRR +PV
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDTAETADGGGEMFRRPVPV 60

Query: 61  ED---------PQTSPVWGDVKLTRPVDSTSEVT------------EDKDVTGKMESKAR 120
           E+         P T PV  + ++ R  DSTS++T              K   G    K +
Sbjct: 61  EEIKSPDPPEQPITHPVSENFEVRRATDSTSQLTEDTAVTPEMEPEVQKGKKGGRRKKKK 120

Query: 121 DGSAEA--------GASGGGDIRASHGDFEQFDERHLRRPQSSPNTQASP--NNIQNNSL 180
           +   E          +SG G        F+   + H   P+   + QA    NN  N+  
Sbjct: 121 EKKREIKEGKRRSKNSSGSGREGYKRYVFKVLKQVH---PEIGISGQAMLILNNFMNDMF 180

Query: 181 T--TTNSNNVWIMIGGQTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVSYDHRRTQ 206
                 +  +    GG TLSSREIQGAV+LV PGELGKHA+AEGTKAVS YVSY +R T+
Sbjct: 181 QRLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRTTK 237

[Close]

BLAST of CmoCh12G008190 vs. NCBI nr
Match: gi|1021047516|gb|KZN05296.1| (hypothetical protein DCAR_006133 [Daucus carota subsp. sativus])

HSP 1 Score: 78.6 bits (192), Expect = 1.4e-11
Identity = 70/214 (32.71%), Postives = 110/214 (51.40%), Query Frame = 1


Query: 1   MPPRRS--RRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRTIPV 60
           M P++S  ++ VG+VV+TTTKV++ETV V+V++ + +   + P T E   +G   + I +
Sbjct: 1   MAPKKSPKKKAVGAVVKTTTKVIQETVQVSVIQTKPKPQQETPQT-ENNKNGP--KDIEI 60

Query: 61  EDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARDGSAEAGASGGGDIRASHGDF 120
           +D  T+P     K T+ + +     + K  + +  +K R  S E               +
Sbjct: 61  QDV-TTPTPTPKKATKTIPTQDTAKKTKKDSAQGATKKRKRSVEG--------------Y 120

Query: 121 EQFDERHLRRPQSSPNTQASPNNIQNNSLT------TTNSNNVWIMIGGQTLSSREIQGA 180
           +++  + L++        +    I NN +T         +  +       TLSSREIQGA
Sbjct: 121 KRYVYKVLKQVHPDIGISSKAMTIVNNLMTDMFERLADEAARLTKYTKKMTLSSREIQGA 180

Query: 181 VKLVFPGELGKHAVAEGTKAVSTYVSYDHRRTQP 207
           VKLV PGELGKHAVAEG KAV+ YV Y    ++P
Sbjct: 181 VKLVLPGELGKHAVAEGAKAVTNYVQYASGPSKP 196

[Close]

BLAST of CmoCh12G008190 vs. NCBI nr
Match: gi|672115262|ref|XP_008780187.1| (PREDICTED: histone H2B.1, embryonic-like [Phoenix dactylifera])

HSP 1 Score: 78.2 bits (191), Expect = 1.9e-11
Identity = 68/210 (32.38%), Postives = 102/210 (48.57%), Query Frame = 1


Query: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGES---QDVTQEPATAETGGDGVFRRTIP 60
           M P+  RR+VG+ V+TT K+VEET+ V+V  GE    Q+ ++EP   ET           
Sbjct: 1   MAPKGQRRVVGTFVKTTRKLVEETLQVSVEGGEGSGEQNHSKEPKVVETA---------- 60

Query: 61  VEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARDGSAEAGASGGGDIRASHGD 120
           +E+ +       V   +  +   E  ++    G  E   RD        GGG +    G 
Sbjct: 61  LEEKKAQESQTSVHPNKRQEEYKEAPKE----GAEEPPQRDEKQGKEGYGGGGVDGVGGG 120

Query: 121 FEQFDERHLRRPQSSPNTQASPNNIQNNSLT------TTNSNNVWIMIGGQTLSSREIQG 180
           ++++  R L++        +    + +  +          +  +    G  TLSSREIQ 
Sbjct: 121 YKRYVFRVLKQVHPGMGVSSRAMAVLDGMMADMFERLADEAARLSRYSGKATLSSREIQD 180

Query: 181 AVKLVFPGELGKHAVAEGTKAVSTYVSYDH 202
           AV+LV PGELGKHA++EGTKAVS Y+S DH
Sbjct: 181 AVRLVLPGELGKHAISEGTKAVSNYMSADH 196

The following BLAST results are available for this feature:

BLAST of CmoCh12G008190 vs. Swiss-Prot


Match Name	E-value	Identity	Description
H2B2_ARATH	5.2e-09	69.05	Histone H2B.2 OS=Arabidopsis thaliana GN=At1g08170 PE=2 SV=1	[more]
H2B2_CAEEL	6.3e-07	72.22	Histone H2B 2 OS=Caenorhabditis elegans GN=his-4 PE=1 SV=3	[more]
H2B3_CAEEL	6.3e-07	72.22	Probable histone H2B 3 OS=Caenorhabditis elegans GN=his-41 PE=3 SV=3	[more]
H2B1_CAEEL	6.3e-07	72.22	Histone H2B 1 OS=Caenorhabditis elegans GN=his-11 PE=1 SV=4	[more]
H2B4_CAEEL	6.3e-07	72.22	Probable histone H2B 4 OS=Caenorhabditis elegans GN=his-48 PE=3 SV=3	[more]

BLAST of CmoCh12G008190 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSH9_CUCSA	1.5e-36	49.16	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G136770 PE=3 SV=1	[more]
A0A166DI86_DAUCA	1.0e-11	32.71	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_006133 PE=4 SV=1	[more]
A0A0K9S0F7_SPIOL	7.2e-10	32.90	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_008320 PE=3 SV=1	[more]
A0A067EYZ1_CITSI	2.3e-08	30.94	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g048093mg PE=3 SV=1	[more]
A0A072VBE2_MEDTR	2.3e-08	31.58	Core histone H2A/H2B/H3/H4 OS=Medicago truncatula GN=MTR_2g084480 PE=3 SV=1	[more]

BLAST of CmoCh12G008190 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G08170.1	2.9e-10	69.05	Histone superfamily protein	[more]
AT1G07790.1	1.8e-07	69.44	Histone superfamily protein	[more]
AT2G37470.1	1.8e-07	69.44	Histone superfamily protein	[more]
AT2G28720.1	1.8e-07	69.44	Histone superfamily protein	[more]
AT3G46030.1	1.8e-07	69.44	Histone superfamily protein	[more]

BLAST of CmoCh12G008190 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209774\|gb\|KGN64870.1\|	2.2e-36	49.16	hypothetical protein Csa_1G136770 [Cucumis sativus]	[more]
gi\|778664983\|ref\|XP_011648456.1\|	2.9e-36	52.75	PREDICTED: histone H2B [Cucumis sativus]	[more]
gi\|659071869\|ref\|XP_008462313.1\|	1.4e-30	45.83	PREDICTED: histone H2B type 1-A-like [Cucumis melo]	[more]
gi\|1021047516\|gb\|KZN05296.1\|	1.4e-11	32.71	hypothetical protein DCAR_006133 [Daucus carota subsp. sativus]	[more]
gi\|672115262\|ref\|XP_008780187.1\|	1.9e-11	32.38	PREDICTED: histone H2B.1, embryonic-like [Phoenix dactylifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000558	Histone_H2B
IPR009072	Histone-fold

Vocabulary: **Cellular Component**
Term	Definition
GO:0000786	nucleosome

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0046982	protein heterodimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G008190.1	CmoCh12G008190.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 183..196 score: 4.6E-10coord: 153..170 score: 4.6E-10coord: 170..183 score: 4.6
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 163..193 score: 3.0
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 123..198 score: 6.
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 162..198 score: 2.1
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 161..198 score: 1.67

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh12G008190	CmaCh12G008090	Cucurbita maxima (Rimu)	cmacmoB177
CmoCh12G008190	Lsi03G000660	Bottle gourd (USVL1VR-Ls)	cmolsiB158
CmoCh12G008190	Cp4.1LG07g06810	Cucurbita pepo (Zucchini)	cmocpeB179
CmoCh12G008190	MELO3C004846.2	Melon (DHL92) v3.6.1	cmomedB151
CmoCh12G008190	CsaV3_1G014270	Cucumber (Chinese Long) v3	cmocucB0172
CmoCh12G008190	Cla97C01G012930	Watermelon (97103) v2	cmowmbB149
CmoCh12G008190	Bhi08G000108	Wax gourd	cmowgoB0214
CmoCh12G008190	CsGy1G014050	Cucumber (Gy14) v2	cgybcmoB054

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh12G008190	Cucurbita moschata (Rifu)	cmocmoB135
CmoCh12G008190	Cucumber (Gy14) v1	cgycmoB0593
CmoCh12G008190	Cucurbita maxima (Rimu)	cmacmoB217
CmoCh12G008190	Wild cucumber (PI 183967)	cmocpiB148
CmoCh12G008190	Cucumber (Chinese Long) v2	cmocuB148
CmoCh12G008190	Melon (DHL92) v3.5.1	cmomeB138
CmoCh12G008190	Watermelon (Charleston Gray)	cmowcgB142
CmoCh12G008190	Watermelon (97103) v1	cmowmB151
CmoCh12G008190	Cucurbita pepo (Zucchini)	cmocpeB165
CmoCh12G008190	Cucurbita pepo (Zucchini)	cmocpeB175
CmoCh12G008190	Silver-seed gourd	carcmoB0233