Cp4.1LG07g06730 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG07g06730
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Histone H2B
Location	Cp4.1LG07 : 5448136 .. 5448561 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCCAAAGGCCGAGAAGAAGCCCGCTGAGAAGAAGCCAGCGGAGGAGAAGAAGGCCGAGAAGGCTCCGGCGGAGAAGAAGCCGAGAGCAGAGAAGAAGCTTCCCAAAGACGGTGCCGATAAGAAGAAGAAGAAGGCGAAGAAGAGCGTGGAGACTTACAAGATCTACATCTTCAAGGTCCTCAAGCAAGTTCATCCTGACATTGGAATCTCCAGCAAGGCCATGGGGATTATGAACAGTTTCATCAACGATATCTTCGAGAAGCTCGCTCAGGAATCTTCCAAACTCGCTCGCTACAACAAGAAGCCAACCATTACCTCTCGGGAGATCCAAACCGCAGTGCGCCTTGTTCTTCCTGGCGAATTGGCCAAGCACGCCGTCTCTGAGGGCACCAAGGCTGTTACCAAATTTACTAGCTCTTAG

mRNA sequence

ATGGCGCCAAAGGCCGAGAAGAAGCCCGCTGAGAAGAAGCCAGCGGAGGAGAAGAAGGCCGAGAAGGCTCCGGCGGAGAAGAAGCCGAGAGCAGAGAAGAAGCTTCCCAAAGACGGTGCCGATAAGAAGAAGAAGAAGGCGAAGAAGAGCGTGGAGACTTACAAGATCTACATCTTCAAGGTCCTCAAGCAAGTTCATCCTGACATTGGAATCTCCAGCAAGGCCATGGGGATTATGAACAGTTTCATCAACGATATCTTCGAGAAGCTCGCTCAGGAATCTTCCAAACTCGCTCGCTACAACAAGAAGCCAACCATTACCTCTCGGGAGATCCAAACCGCAGTGCGCCTTGTTCTTCCTGGCGAATTGGCCAAGCACGCCGTCTCTGAGGGCACCAAGGCTGTTACCAAATTTACTAGCTCTTAG

Coding sequence (CDS)

ATGGCGCCAAAGGCCGAGAAGAAGCCCGCTGAGAAGAAGCCAGCGGAGGAGAAGAAGGCCGAGAAGGCTCCGGCGGAGAAGAAGCCGAGAGCAGAGAAGAAGCTTCCCAAAGACGGTGCCGATAAGAAGAAGAAGAAGGCGAAGAAGAGCGTGGAGACTTACAAGATCTACATCTTCAAGGTCCTCAAGCAAGTTCATCCTGACATTGGAATCTCCAGCAAGGCCATGGGGATTATGAACAGTTTCATCAACGATATCTTCGAGAAGCTCGCTCAGGAATCTTCCAAACTCGCTCGCTACAACAAGAAGCCAACCATTACCTCTCGGGAGATCCAAACCGCAGTGCGCCTTGTTCTTCCTGGCGAATTGGCCAAGCACGCCGTCTCTGAGGGCACCAAGGCTGTTACCAAATTTACTAGCTCTTAG

Protein sequence

MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDGADKKKKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS

Homology

[Close]

BLAST of Cp4.1LG07g06730 vs. Swiss-Prot
Match: H2B_GOSHI (Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 227.6 bits (579), Expect = 8.3e-59
Identity = 133/147 (90.48%), Postives = 138/147 (93.88%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAEEKKA--EKAPAEKKPRAEKKLPKDGA----DKKKKKAKKSVETY 60
           MAPKAEKKPAEKKPAEEKKA  EKAPAEKKP+A KKLPK+G     DKKKK+ KKSVETY
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRVKKSVETY 60

Query: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120
           KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTA
Sbjct: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTA 120

Query: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 142
           VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 147

[Close]

BLAST of Cp4.1LG07g06730 vs. Swiss-Prot
Match: H2B1_SOLLC (Histone H2B.1 OS=Solanum lycopersicum GN=H2B-1 PE=2 SV=4)

HSP 1 Score: 226.9 bits (577), Expect = 1.4e-58
Identity = 130/142 (91.55%), Postives = 136/142 (95.77%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKD-GADKKKKKAKKSVETYKIYIF 60
           MAPKA KKPAEKKP EEKKAE+ PAEKKP+A KKLPKD GADKKKKK+KKSVETYKIYIF
Sbjct: 1   MAPKAGKKPAEKKPVEEKKAEEVPAEKKPKAGKKLPKDAGADKKKKKSKKSVETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSK+MGIMNSFINDIFEKLAQESS+LAR NKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKSMGIMNSFINDIFEKLAQESSRLARINKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 142
           PGELAKHAVSEGTKAVTKFTS+
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSN 142

[Close]

BLAST of Cp4.1LG07g06730 vs. Swiss-Prot
Match: H2B7_ARATH (Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030 PE=1 SV=3)

HSP 1 Score: 225.7 bits (574), Expect = 3.1e-58
Identity = 133/145 (91.72%), Postives = 135/145 (93.10%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAEEK-KAEKAPAEKKPRAEKKLPKD---GADKKKKKAKKSVETYKI 60
           MAPKAEKKPAEKKP EEK KAEKAPAEKKP+A KKLPK+   G DKKKK  KKSVETYKI
Sbjct: 1   MAPKAEKKPAEKKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSVETYKI 60

Query: 61  YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVR 120
           YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSREIQTAVR
Sbjct: 61  YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVR 120

Query: 121 LVLPGELAKHAVSEGTKAVTKFTSS 142
           LVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 LVLPGELAKHAVSEGTKAVTKFTSS 145

[Close]

BLAST of Cp4.1LG07g06730 vs. Swiss-Prot
Match: H2B1_MEDTR (Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 225.7 bits (574), Expect = 3.1e-58
Identity = 132/148 (89.19%), Postives = 138/148 (93.24%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAEEKK---AEKAPAEKKPRAEKKLPKDGA----DKKKKKAKKSVET 60
           MAPK EKKPAEKKPAEEKK   AEKAPAEKKP+A KKLPK+G     +KKKK++KKSVET
Sbjct: 1   MAPKGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGEKKKKRSKKSVET 60

Query: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT 120
           YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQT
Sbjct: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT 120

Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 142
           AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]

BLAST of Cp4.1LG07g06730 vs. Swiss-Prot
Match: H2B11_ARATH (Histone H2B.11 OS=Arabidopsis thaliana GN=At5g59910 PE=1 SV=5)

HSP 1 Score: 224.2 bits (570), Expect = 9.2e-58
Identity = 133/150 (88.67%), Postives = 136/150 (90.67%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAEEK------KAEKAPAEKKPRAEKKLPKD---GADKKKKKAKKSV 60
           MAPKAEKKPAEKKPA EK      KAEKAPAEKKP+A KKLPK+   G DKKKK  KKSV
Sbjct: 1   MAPKAEKKPAEKKPASEKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSV 60

Query: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 120
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREI
Sbjct: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREI 120

Query: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 142
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of Cp4.1LG07g06730 vs. TrEMBL
Match: I1SN83_HEVBR (Histone H2B OS=Hevea brasiliensis GN=H2B1 PE=2 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 8.1e-61
Identity = 138/144 (95.83%), Postives = 140/144 (97.22%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDG---ADKKKKKAKKSVETYKIY 60
           MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDG   ADKKKK+ KKSVETYKIY
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDGGSAADKKKKRTKKSVETYKIY 60

Query: 61  IFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRL 120
           IFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRL
Sbjct: 61  IFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRL 120

Query: 121 VLPGELAKHAVSEGTKAVTKFTSS 142
           VLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 VLPGELAKHAVSEGTKAVTKFTSS 144

[Close]

BLAST of Cp4.1LG07g06730 vs. TrEMBL
Match: A0A0D2SV51_GOSRA (Histone H2B OS=Gossypium raimondii GN=B456_006G104400 PE=3 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 8.1e-61
Identity = 134/141 (95.04%), Postives = 139/141 (98.58%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDGADKKKKKAKKSVETYKIYIFK 60
           MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPK+  DKKKK++KKS+ETYKIYIFK
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKEAGDKKKKRSKKSIETYKIYIFK 60

Query: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 120
           VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVLP
Sbjct: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLP 120

Query: 121 GELAKHAVSEGTKAVTKFTSS 142
           GELAKHAVSEGTKAVTKFTSS
Sbjct: 121 GELAKHAVSEGTKAVTKFTSS 141

[Close]

BLAST of Cp4.1LG07g06730 vs. TrEMBL
Match: A0A0A0LV55_CUCSA (Histone H2B OS=Cucumis sativus GN=Csa_1G132130 PE=3 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 1.1e-60
Identity = 137/142 (96.48%), Postives = 140/142 (98.59%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPA-EEKKAEKAPAEKKPRAEKKLPKDGADKKKKKAKKSVETYKIYIF 60
           MAPKAEKKPAEKKPA EEKKAEKAPAEKKPRAEKKLPKD +DKKKK+AKKS+ETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 142
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]

BLAST of Cp4.1LG07g06730 vs. TrEMBL
Match: A0A0D2S0C9_GOSRA (Histone H2B OS=Gossypium raimondii GN=B456_006G104500 PE=3 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 1.8e-60
Identity = 133/141 (94.33%), Postives = 139/141 (98.58%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDGADKKKKKAKKSVETYKIYIFK 60
           MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPK+  DK+KK++KKS+ETYKIYIFK
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKEAGDKRKKRSKKSIETYKIYIFK 60

Query: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 120
           VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVLP
Sbjct: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLP 120

Query: 121 GELAKHAVSEGTKAVTKFTSS 142
           GELAKHAVSEGTKAVTKFTSS
Sbjct: 121 GELAKHAVSEGTKAVTKFTSS 141

[Close]

BLAST of Cp4.1LG07g06730 vs. TrEMBL
Match: A0A0D2NPV9_GOSRA (Histone H2B OS=Gossypium raimondii GN=B456_006G104600 PE=3 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 1.8e-60
Identity = 133/141 (94.33%), Postives = 139/141 (98.58%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDGADKKKKKAKKSVETYKIYIFK 60
           MAPKAEKKPAEKKPAEEKKA+KAPAEKKPRAEKKLPK+  DKKKK++KKS+ETYKIYIFK
Sbjct: 1   MAPKAEKKPAEKKPAEEKKADKAPAEKKPRAEKKLPKEAGDKKKKRSKKSIETYKIYIFK 60

Query: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 120
           VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVLP
Sbjct: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLP 120

Query: 121 GELAKHAVSEGTKAVTKFTSS 142
           GELAKHAVSEGTKAVTKFTSS
Sbjct: 121 GELAKHAVSEGTKAVTKFTSS 141

[Close]

BLAST of Cp4.1LG07g06730 vs. TAIR10
Match: AT3G46030.1 (AT3G46030.1 Histone superfamily protein)

HSP 1 Score: 225.7 bits (574), Expect = 1.8e-59
Identity = 133/145 (91.72%), Postives = 135/145 (93.10%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAEEK-KAEKAPAEKKPRAEKKLPKD---GADKKKKKAKKSVETYKI 60
           MAPKAEKKPAEKKP EEK KAEKAPAEKKP+A KKLPK+   G DKKKK  KKSVETYKI
Sbjct: 1   MAPKAEKKPAEKKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSVETYKI 60

Query: 61  YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVR 120
           YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSREIQTAVR
Sbjct: 61  YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVR 120

Query: 121 LVLPGELAKHAVSEGTKAVTKFTSS 142
           LVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 LVLPGELAKHAVSEGTKAVTKFTSS 145

[Close]

BLAST of Cp4.1LG07g06730 vs. TAIR10
Match: AT5G59910.1 (AT5G59910.1 Histone superfamily protein)

HSP 1 Score: 224.2 bits (570), Expect = 5.2e-59
Identity = 133/150 (88.67%), Postives = 136/150 (90.67%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAEEK------KAEKAPAEKKPRAEKKLPKD---GADKKKKKAKKSV 60
           MAPKAEKKPAEKKPA EK      KAEKAPAEKKP+A KKLPK+   G DKKKK  KKSV
Sbjct: 1   MAPKAEKKPAEKKPASEKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSV 60

Query: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 120
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREI
Sbjct: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREI 120

Query: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 142
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of Cp4.1LG07g06730 vs. TAIR10
Match: AT3G45980.1 (AT3G45980.1 Histone superfamily protein)

HSP 1 Score: 221.9 bits (564), Expect = 2.6e-58
Identity = 132/150 (88.00%), Postives = 135/150 (90.00%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAEEK------KAEKAPAEKKPRAEKKLPKD---GADKKKKKAKKSV 60
           MAP+AEKKPAEKKPA EK      KAEKAPAEKKP+A KKLPK+   G DKKKK  KKSV
Sbjct: 1   MAPRAEKKPAEKKPAAEKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSV 60

Query: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 120
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSREI
Sbjct: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREI 120

Query: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 142
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of Cp4.1LG07g06730 vs. TAIR10
Match: AT2G28720.1 (AT2G28720.1 Histone superfamily protein)

HSP 1 Score: 218.8 bits (556), Expect = 2.2e-57
Identity = 130/151 (86.09%), Postives = 135/151 (89.40%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAE------EKKAEKAPAEKKPRAEKKLPKD----GADKKKKKAKKS 60
           MAPKA KKPAEKKPAE      EK AEKAPAEKKP+A KKLPK+    G +KKKK+ KKS
Sbjct: 1   MAPKAGKKPAEKKPAEKAPAEEEKVAEKAPAEKKPKAGKKLPKEAVTGGVEKKKKRVKKS 60

Query: 61  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSRE 120
            ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSRE
Sbjct: 61  TETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSRE 120

Query: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 142
           IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151

[Close]

BLAST of Cp4.1LG07g06730 vs. TAIR10
Match: AT1G07790.1 (AT1G07790.1 Histone superfamily protein)

HSP 1 Score: 218.0 bits (554), Expect = 3.7e-57
Identity = 129/148 (87.16%), Postives = 135/148 (91.22%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPA------EEKKAEKAPAEKKPRAEKKLP-KDGADKKKKKAKKSVET 60
           MAP+AEKKPAEKK A      E K AEKAPAEKKP+A KKLP K+  DKKKK++KK+VET
Sbjct: 1   MAPRAEKKPAEKKTAAERPVEENKAAEKAPAEKKPKAGKKLPPKEAGDKKKKRSKKNVET 60

Query: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT 120
           YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT
Sbjct: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT 120

Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 142
           AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]

BLAST of Cp4.1LG07g06730 vs. NCBI nr
Match: gi|823172029|ref|XP_012484994.1| (PREDICTED: histone H2B-like [Gossypium raimondii])

HSP 1 Score: 241.1 bits (614), Expect = 1.2e-60
Identity = 134/141 (95.04%), Postives = 139/141 (98.58%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDGADKKKKKAKKSVETYKIYIFK 60
           MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPK+  DKKKK++KKS+ETYKIYIFK
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKEAGDKKKKRSKKSIETYKIYIFK 60

Query: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 120
           VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVLP
Sbjct: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLP 120

Query: 121 GELAKHAVSEGTKAVTKFTSS 142
           GELAKHAVSEGTKAVTKFTSS
Sbjct: 121 GELAKHAVSEGTKAVTKFTSS 141

[Close]

BLAST of Cp4.1LG07g06730 vs. NCBI nr
Match: gi|312985271|gb|ADR30786.1| (histone H2B1 [Hevea brasiliensis])

HSP 1 Score: 241.1 bits (614), Expect = 1.2e-60
Identity = 138/144 (95.83%), Postives = 140/144 (97.22%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDG---ADKKKKKAKKSVETYKIY 60
           MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDG   ADKKKK+ KKSVETYKIY
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDGGSAADKKKKRTKKSVETYKIY 60

Query: 61  IFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRL 120
           IFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRL
Sbjct: 61  IFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRL 120

Query: 121 VLPGELAKHAVSEGTKAVTKFTSS 142
           VLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 VLPGELAKHAVSEGTKAVTKFTSS 144

[Close]

BLAST of Cp4.1LG07g06730 vs. NCBI nr
Match: gi|778659255|ref|XP_011654070.1| (PREDICTED: histone H2B.7 [Cucumis sativus])

HSP 1 Score: 240.7 bits (613), Expect = 1.5e-60
Identity = 137/142 (96.48%), Postives = 140/142 (98.59%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPA-EEKKAEKAPAEKKPRAEKKLPKDGADKKKKKAKKSVETYKIYIF 60
           MAPKAEKKPAEKKPA EEKKAEKAPAEKKPRAEKKLPKD +DKKKK+AKKS+ETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 142
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]

BLAST of Cp4.1LG07g06730 vs. NCBI nr
Match: gi|823172032|ref|XP_012484995.1| (PREDICTED: histone H2B-like [Gossypium raimondii])

HSP 1 Score: 240.0 bits (611), Expect = 2.6e-60
Identity = 133/141 (94.33%), Postives = 139/141 (98.58%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDGADKKKKKAKKSVETYKIYIFK 60
           MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPK+  DK+KK++KKS+ETYKIYIFK
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKEAGDKRKKRSKKSIETYKIYIFK 60

Query: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 120
           VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVLP
Sbjct: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLP 120

Query: 121 GELAKHAVSEGTKAVTKFTSS 142
           GELAKHAVSEGTKAVTKFTSS
Sbjct: 121 GELAKHAVSEGTKAVTKFTSS 141

[Close]

BLAST of Cp4.1LG07g06730 vs. NCBI nr
Match: gi|823172056|ref|XP_012485001.1| (PREDICTED: histone H2B-like [Gossypium raimondii])

HSP 1 Score: 240.0 bits (611), Expect = 2.6e-60
Identity = 133/141 (94.33%), Postives = 139/141 (98.58%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAEEKKAEKAPAEKKPRAEKKLPKDGADKKKKKAKKSVETYKIYIFK 60
           MAPKAEKKPAEKKPAEEKKA+KAPAEKKPRAEKKLPK+  DKKKK++KKS+ETYKIYIFK
Sbjct: 1   MAPKAEKKPAEKKPAEEKKADKAPAEKKPRAEKKLPKEAGDKKKKRSKKSIETYKIYIFK 60

Query: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLP 120
           VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVLP
Sbjct: 61  VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLP 120

Query: 121 GELAKHAVSEGTKAVTKFTSS 142
           GELAKHAVSEGTKAVTKFTSS
Sbjct: 121 GELAKHAVSEGTKAVTKFTSS 141

The following BLAST results are available for this feature:

BLAST of Cp4.1LG07g06730 vs. Swiss-Prot


Match Name	E-value	Identity	Description
H2B_GOSHI	8.3e-59	90.48	Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV=3	[more]
H2B1_SOLLC	1.4e-58	91.55	Histone H2B.1 OS=Solanum lycopersicum GN=H2B-1 PE=2 SV=4	[more]
H2B7_ARATH	3.1e-58	91.72	Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030 PE=1 SV=3	[more]
H2B1_MEDTR	3.1e-58	89.19	Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3	[more]
H2B11_ARATH	9.2e-58	88.67	Histone H2B.11 OS=Arabidopsis thaliana GN=At5g59910 PE=1 SV=5	[more]

BLAST of Cp4.1LG07g06730 vs. TrEMBL


Match Name	E-value	Identity	Description
I1SN83_HEVBR	8.1e-61	95.83	Histone H2B OS=Hevea brasiliensis GN=H2B1 PE=2 SV=1	[more]
A0A0D2SV51_GOSRA	8.1e-61	95.04	Histone H2B OS=Gossypium raimondii GN=B456_006G104400 PE=3 SV=1	[more]
A0A0A0LV55_CUCSA	1.1e-60	96.48	Histone H2B OS=Cucumis sativus GN=Csa_1G132130 PE=3 SV=1	[more]
A0A0D2S0C9_GOSRA	1.8e-60	94.33	Histone H2B OS=Gossypium raimondii GN=B456_006G104500 PE=3 SV=1	[more]
A0A0D2NPV9_GOSRA	1.8e-60	94.33	Histone H2B OS=Gossypium raimondii GN=B456_006G104600 PE=3 SV=1	[more]

BLAST of Cp4.1LG07g06730 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G46030.1	1.8e-59	91.72	Histone superfamily protein	[more]
AT5G59910.1	5.2e-59	88.67	Histone superfamily protein	[more]
AT3G45980.1	2.6e-58	88.00	Histone superfamily protein	[more]
AT2G28720.1	2.2e-57	86.09	Histone superfamily protein	[more]
AT1G07790.1	3.7e-57	87.16	Histone superfamily protein	[more]

BLAST of Cp4.1LG07g06730 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|823172029\|ref\|XP_012484994.1\|	1.2e-60	95.04	PREDICTED: histone H2B-like [Gossypium raimondii]	[more]
gi\|312985271\|gb\|ADR30786.1\|	1.2e-60	95.83	histone H2B1 [Hevea brasiliensis]	[more]
gi\|778659255\|ref\|XP_011654070.1\|	1.5e-60	96.48	PREDICTED: histone H2B.7 [Cucumis sativus]	[more]
gi\|823172032\|ref\|XP_012484995.1\|	2.6e-60	94.33	PREDICTED: histone H2B-like [Gossypium raimondii]	[more]
gi\|823172056\|ref\|XP_012485001.1\|	2.6e-60	94.33	PREDICTED: histone H2B-like [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046982	protein heterodimerization activity
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0000786	nucleosome

Vocabulary: **INTERPRO**
Term	Definition
IPR009072	Histone-fold
IPR007125	Histone_H2A/H2B/H3
IPR000558	Histone_H2B

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG07g06730.1	Cp4.1LG07g06730.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 73..93 score: 5.2E-49coord: 112..125 score: 5.2E-49coord: 54..72 score: 5.2E-49coord: 125..138 score: 5.2E-49coord: 95..112 score: 5.2
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 13..141 score: 1.1E
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 44..140 score: 8.0
IPR000558	Histone H2B	PROSITE	PS00357	HISTONE_H2B	coord: 109..131 scor
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 4..117 score: 1.3
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 21..141 score: 1.8
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 26..141 score: 1.61

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG07g06730	Cucsa.200320	Cucumber (Gy14) v1	cgycpeB0566
Cp4.1LG07g06730	CmaCh12G008130	Cucurbita maxima (Rimu)	cmacpeB203
Cp4.1LG07g06730	CmaCh13G002590	Cucurbita maxima (Rimu)	cmacpeB251
Cp4.1LG07g06730	CmoCh12G008220	Cucurbita moschata (Rifu)	cmocpeB179
Cp4.1LG07g06730	CmoCh13G002650	Cucurbita moschata (Rifu)	cmocpeB216
Cp4.1LG07g06730	Cla001860	Watermelon (97103) v1	cpewmB805
Cp4.1LG07g06730	Csa1G136770	Cucumber (Chinese Long) v2	cpecuB808
Cp4.1LG07g06730	Csa1G132130	Cucumber (Chinese Long) v2	cpecuB805
Cp4.1LG07g06730	MELO3C004868	Melon (DHL92) v3.5.1	cpemeB744
Cp4.1LG07g06730	ClCG01G013820	Watermelon (Charleston Gray)	cpewcgB727
Cp4.1LG07g06730	CSPI01G14070	Wild cucumber (PI 183967)	cpecpiB809
Cp4.1LG07g06730	CSPI01G13910	Wild cucumber (PI 183967)	cpecpiB805
Cp4.1LG07g06730	Lsi03G000550	Bottle gourd (USVL1VR-Ls)	cpelsiB669
Cp4.1LG07g06730	Lsi03G000660	Bottle gourd (USVL1VR-Ls)	cpelsiB670
Cp4.1LG07g06730	MELO3C004866.2	Melon (DHL92) v3.6.1	cpemedB880
Cp4.1LG07g06730	CsaV3_1G014090	Cucumber (Chinese Long) v3	cpecucB0996
Cp4.1LG07g06730	Bhi08G000126	Wax gourd	cpewgoB1056
Cp4.1LG07g06730	CsGy1G013920	Cucumber (Gy14) v2	cgybcpeB142
Cp4.1LG07g06730	Carg23703	Silver-seed gourd	carcpeB0240

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG07g06730	Cp4.1LG20g07320	Cucurbita pepo (Zucchini)	cpecpeB446

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG07g06730	Cucurbita maxima (Rimu)	cmacpeB208
Cp4.1LG07g06730	Cucurbita moschata (Rifu)	cmocpeB175
Cp4.1LG07g06730	Watermelon (97103) v1	cpewmB802
Cp4.1LG07g06730	Melon (DHL92) v3.6.1	cpemedB881
Cp4.1LG07g06730	Wax gourd	cpewgoB1055