CsaV3_1G014090 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G014090
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Histone H2B
Location	chr1 : 9589609 .. 9590528 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATTCACAAGCTTATCAATAATCTTAAAGTCTGGTGAAGACATTTTTTTTGGACAAATCACCATTTGGGTAGCAACTGTTCTATCATGTGGGATTATGAAGCTCCTATGTAATACTATTACCTAACATGATAATAGTTTAAAAAACTTAAAAGGAAACAAATTGATAATATTTAAGTTTTAAAGCTTTGAGAATGAGAAAGACCCGCGAAAACTGAAATTTTGTAAACCAAACCAAAATGGTAAAGACCCCAACCTCAAATTCAAATCGGTTCTCTAAACAAACCCATTTATTTAAATACAGCCGTCGGATACCGATTTTCCAATCCTCACCGTCCACGTTTCCGATCCGTGTCTCAATAAAACCCACCAATTACTTTGCGCCTTCCCCATCTATAAATATAAACAATCCCCTCTATTTGTAAATTCAATACTCGCTTTTACTCGCATTTTCGATACAACCTCCAAATTCCTTCGTTATATTTAGCAATGGCGCCAAAGGCTGAGAAGAAGCCCGCCGAGAAGAAGCCAGCGGCGGAGGAGAAGAAGGCCGAGAAAGCTCCGGCAGAGAAGAAGCCACGAGCCGAGAAGAAGCTTCCCAAAGACGCCTCCGATAAGAAGAAGAAGAGAGCCAAGAAGAGCATTGAGACTTACAAGATCTACATCTTCAAAGTCCTCAAGCAAGTTCATCCCGACATCGGAATCTCTAGCAAAGCCATGGGGATTATGAACAGCTTCATCAACGACATTTTCGAGAAGCTCGCTCAGGAATCCTCAAAGCTCGCTCGCTACAACAAGAAGCCGACTATCACCTCTCGGGAGATCCAAACGGCGGTGCGCCTTGTTCTTCCTGGTGAGCTGGCTAAACACGCTGTCTCTGAGGGTACCAAGGCTGTTACCAAGTTCACTAGCTCTTAG

mRNA sequence

ATGACATTCACAAGCTTATCAATAATCTTAAAGTCTGGTGAAGACATTTTTTTTGGACAAATCACCATTTGGGTAGCAACTGTTCTATCATGTGGGATTATGAAGCTCCTATCAATGGCGCCAAAGGCTGAGAAGAAGCCCGCCGAGAAGAAGCCAGCGGCGGAGGAGAAGAAGGCCGAGAAAGCTCCGGCAGAGAAGAAGCCACGAGCCGAGAAGAAGCTTCCCAAAGACGCCTCCGATAAGAAGAAGAAGAGAGCCAAGAAGAGCATTGAGACTTACAAGATCTACATCTTCAAAGTCCTCAAGCAAGTTCATCCCGACATCGGAATCTCTAGCAAAGCCATGGGGATTATGAACAGCTTCATCAACGACATTTTCGAGAAGCTCGCTCAGGAATCCTCAAAGCTCGCTCGCTACAACAAGAAGCCGACTATCACCTCTCGGGAGATCCAAACGGCGGTGCGCCTTGTTCTTCCTGGTGAGCTGGCTAAACACGCTGTCTCTGAGGGTACCAAGGCTGTTACCAAGTTCACTAGCTCTTAG

Coding sequence (CDS)

ATGACATTCACAAGCTTATCAATAATCTTAAAGTCTGGTGAAGACATTTTTTTTGGACAAATCACCATTTGGGTAGCAACTGTTCTATCATGTGGGATTATGAAGCTCCTATCAATGGCGCCAAAGGCTGAGAAGAAGCCCGCCGAGAAGAAGCCAGCGGCGGAGGAGAAGAAGGCCGAGAAAGCTCCGGCAGAGAAGAAGCCACGAGCCGAGAAGAAGCTTCCCAAAGACGCCTCCGATAAGAAGAAGAAGAGAGCCAAGAAGAGCATTGAGACTTACAAGATCTACATCTTCAAAGTCCTCAAGCAAGTTCATCCCGACATCGGAATCTCTAGCAAAGCCATGGGGATTATGAACAGCTTCATCAACGACATTTTCGAGAAGCTCGCTCAGGAATCCTCAAAGCTCGCTCGCTACAACAAGAAGCCGACTATCACCTCTCGGGAGATCCAAACGGCGGTGCGCCTTGTTCTTCCTGGTGAGCTGGCTAAACACGCTGTCTCTGAGGGTACCAAGGCTGTTACCAAGTTCACTAGCTCTTAG

Protein sequence

MTFTSLSIILKSGEDIFFGQITIWVATVLSCGIMKLLSMAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS

Homology

[Close]

BLAST of CsaV3_1G014090 vs. NCBI nr
Match: XP_004139453.1 (PREDICTED: histone H2B.7-like [Cucumis sativus] >KGN64858.1 Histone H2B [Cucumis sativus])

HSP 1 Score: 193.0 bits (489), Expect = 9.0e-46
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 0


Query: 39  MAPKAEKKPAEKKPAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 98
           MAPKAEKKPAEKKPAAE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60

Query: 99  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 158
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 159 PGELAKHAVSEGTKAVTKFTSS 181
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]

BLAST of CsaV3_1G014090 vs. NCBI nr
Match: XP_011654070.1 (PREDICTED: histone H2B.7 [Cucumis sativus] >XP_011654073.1 PREDICTED: histone H2B.7 [Cucumis sativus] >KGN64852.1 Histone H2B [Cucumis sativus] >KGN64854.1 Histone H2B [Cucumis sativus])

HSP 1 Score: 193.0 bits (489), Expect = 9.0e-46
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 0


Query: 39  MAPKAEKKPAEKKPAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 98
           MAPKAEKKPAEKKPAAE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60

Query: 99  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 158
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 159 PGELAKHAVSEGTKAVTKFTSS 181
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]

BLAST of CsaV3_1G014090 vs. NCBI nr
Match: XP_016903018.1 (PREDICTED: LOW QUALITY PROTEIN: histone H2B.7-like [Cucumis melo])

HSP 1 Score: 193.0 bits (489), Expect = 9.0e-46
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 0


Query: 39  MAPKAEKKPAEKKPAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 98
           MAPKAEKKPAEKKPAAE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60

Query: 99  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 158
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 159 PGELAKHAVSEGTKAVTKFTSS 181
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]

BLAST of CsaV3_1G014090 vs. NCBI nr
Match: XP_022152883.1 (histone H2B.7 [Momordica charantia])

HSP 1 Score: 193.0 bits (489), Expect = 9.0e-46
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 0


Query: 39  MAPKAEKKPAEKKPAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 98
           MAPKAEKKPAEKKPAAE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60

Query: 99  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 158
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 159 PGELAKHAVSEGTKAVTKFTSS 181
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]

BLAST of CsaV3_1G014090 vs. NCBI nr
Match: XP_022964641.1 (histone H2B.7-like [Cucurbita moschata] >XP_022970349.1 histone H2B.7-like [Cucurbita maxima] >XP_023519436.1 histone H2B.7-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 193.0 bits (489), Expect = 9.0e-46
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 0


Query: 39  MAPKAEKKPAEKKPAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 98
           MAPKAEKKPAEKKPAAE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60

Query: 99  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 158
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 159 PGELAKHAVSEGTKAVTKFTSS 181
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]

BLAST of CsaV3_1G014090 vs. TAIR10
Match: AT5G02570.1 (Histone superfamily protein)

HSP 1 Score: 177.9 bits (450), Expect = 5.4e-45
Identity = 129/142 (90.85%), Postives = 130/142 (91.55%), Query Frame = 0


Query: 39  MAPKAEKKPAEKKPAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 98
           MAPKAEKKPAEK P          XXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF
Sbjct: 1   MAPKAEKKPAEKAP----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60

Query: 99  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 158
           KVLKQVHPDIGIS KAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVL 120

Query: 159 PGELAKHAVSEGTKAVTKFTSS 181
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 132

[Close]

BLAST of CsaV3_1G014090 vs. TAIR10
Match: AT1G07790.1 (Histone superfamily protein)

HSP 1 Score: 174.9 bits (442), Expect = 4.6e-44
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 91  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 150
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI
Sbjct: 59  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 118

Query: 151 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 181
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 119 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]

BLAST of CsaV3_1G014090 vs. TAIR10
Match: AT2G28720.1 (Histone superfamily protein)

HSP 1 Score: 173.7 bits (439), Expect = 1.0e-43
Identity = 89/90 (98.89%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 91  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 150
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREI
Sbjct: 62  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREI 121

Query: 151 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 181
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 122 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151

[Close]

BLAST of CsaV3_1G014090 vs. TAIR10
Match: AT5G59910.1 (Histone superfamily protein)

HSP 1 Score: 173.7 bits (439), Expect = 1.0e-43
Identity = 89/90 (98.89%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 91  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 150
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREI
Sbjct: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREI 120

Query: 151 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 181
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of CsaV3_1G014090 vs. TAIR10
Match: AT3G46030.1 (Histone superfamily protein)

HSP 1 Score: 172.9 bits (437), Expect = 1.7e-43
Identity = 89/90 (98.89%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 91  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 150
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSREI
Sbjct: 56  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREI 115

Query: 151 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 181
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 116 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145

[Close]

BLAST of CsaV3_1G014090 vs. Swiss-Prot
Match: sp|Q9LZ45|H2B9_ARATH (Histone H2B.9 OS=Arabidopsis thaliana OX=3702 GN=At5g02570 PE=1 SV=3)

HSP 1 Score: 177.9 bits (450), Expect = 9.8e-44
Identity = 129/142 (90.85%), Postives = 130/142 (91.55%), Query Frame = 0


Query: 39  MAPKAEKKPAEKKPAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 98
           MAPKAEKKPAEK P          XXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF
Sbjct: 1   MAPKAEKKPAEKAP----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60

Query: 99  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 158
           KVLKQVHPDIGIS KAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVL 120

Query: 159 PGELAKHAVSEGTKAVTKFTSS 181
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 132

[Close]

BLAST of CsaV3_1G014090 vs. Swiss-Prot
Match: sp|Q9LQQ4|H2B1_ARATH (Histone H2B.1 OS=Arabidopsis thaliana OX=3702 GN=At1g07790 PE=1 SV=3)

HSP 1 Score: 174.9 bits (442), Expect = 8.3e-43
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 91  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 150
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI
Sbjct: 59  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 118

Query: 151 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 181
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 119 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]

BLAST of CsaV3_1G014090 vs. Swiss-Prot
Match: sp|A2XF66|H2B1_ORYSI (Histone H2B.1 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_010709 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.1e-42
Identity = 119/152 (78.29%), Postives = 124/152 (81.58%), Query Frame = 0


Query: 39  MAPKAEKKPAEKKPAA----------EXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 98
           MAPKAEKKPAEKKPAA           XXXXXXXXXXXXXXXXXXX              
Sbjct: 1   MAPKAEKKPAEKKPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAGDKKGRKKAKK 60

Query: 99  XXETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 158
             ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLAQE+++LARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSR 120

Query: 159 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 181
           EIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct: 121 EIQTSVRLVLPGELAKHAVSEGTKAVTKFTSN 152

[Close]

BLAST of CsaV3_1G014090 vs. Swiss-Prot
Match: sp|A3AGM4|H2B1_ORYSJ (Histone H2B.1 OS=Oryza sativa subsp. japonica OX=39947 GN=H2B1 PE=1 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.1e-42
Identity = 119/152 (78.29%), Postives = 124/152 (81.58%), Query Frame = 0


Query: 39  MAPKAEKKPAEKKPAA----------EXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 98
           MAPKAEKKPAEKKPAA           XXXXXXXXXXXXXXXXXXX              
Sbjct: 1   MAPKAEKKPAEKKPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAGDKKGRKKAKK 60

Query: 99  XXETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 158
             ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLAQE+++LARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSR 120

Query: 159 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 181
           EIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct: 121 EIQTSVRLVLPGELAKHAVSEGTKAVTKFTSN 152

[Close]

BLAST of CsaV3_1G014090 vs. Swiss-Prot
Match: sp|P40283|H2B11_ARATH (Histone H2B.11 OS=Arabidopsis thaliana OX=3702 GN=At5g59910 PE=1 SV=5)

HSP 1 Score: 173.7 bits (439), Expect = 1.8e-42
Identity = 89/90 (98.89%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 91  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 150
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREI
Sbjct: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREI 120

Query: 151 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 181
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of CsaV3_1G014090 vs. TrEMBL
Match: tr|A0A0A0LV55|A0A0A0LV55_CUCSA (Histone H2B OS=Cucumis sativus OX=3659 GN=Csa_1G132130 PE=3 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 6.0e-46
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 0


Query: 39  MAPKAEKKPAEKKPAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 98
           MAPKAEKKPAEKKPAAE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60

Query: 99  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 158
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 159 PGELAKHAVSEGTKAVTKFTSS 181
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]

BLAST of CsaV3_1G014090 vs. TrEMBL
Match: tr|A0A1S4E463|A0A1S4E463_CUCME (Histone H2B OS=Cucumis melo OX=3656 GN=LOC103500805 PE=3 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 6.0e-46
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 0


Query: 39  MAPKAEKKPAEKKPAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 98
           MAPKAEKKPAEKKPAAE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60

Query: 99  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 158
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 159 PGELAKHAVSEGTKAVTKFTSS 181
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]

BLAST of CsaV3_1G014090 vs. TrEMBL
Match: tr|A0A0A0LST8|A0A0A0LST8_CUCSA (Histone H2B OS=Cucumis sativus OX=3659 GN=Csa_1G132680 PE=3 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 6.0e-46
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 0


Query: 39  MAPKAEKKPAEKKPAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 98
           MAPKAEKKPAEKKPAAE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 60

Query: 99  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 158
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 159 PGELAKHAVSEGTKAVTKFTSS 181
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]

BLAST of CsaV3_1G014090 vs. TrEMBL
Match: tr|A0A2G2ZYA2|A0A2G2ZYA2_CAPAN (Histone H2B OS=Capsicum annuum OX=4072 GN=LOC107863599 PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.6e-43
Identity = 124/142 (87.32%), Postives = 125/142 (88.03%), Query Frame = 0


Query: 39  MAPKAEKKPAEKKPAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 98
           MAPK EKKPAEKKPAA XXXXXXXXXXXXXXXXXXXXX              ETYKIYIF
Sbjct: 1   MAPKVEKKPAEKKPAAXXXXXXXXXXXXXXXXXXXXXXGAAGDKKKRVKKSVETYKIYIF 60

Query: 99  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 158
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LAR NKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARINKKPTITSREIQTAVRLVL 120

Query: 159 PGELAKHAVSEGTKAVTKFTSS 181
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

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BLAST of CsaV3_1G014090 vs. TrEMBL
Match: tr|A0A1U8G135|A0A1U8G135_CAPAN (Histone H2B OS=Capsicum annuum OX=4072 GN=T459_09055 PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.6e-43
Identity = 124/142 (87.32%), Postives = 125/142 (88.03%), Query Frame = 0


Query: 39  MAPKAEKKPAEKKPAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYKIYIF 98
           MAPK EKKPAEKKPAA XXXXXXXXXXXXXXXXXXXXX              ETYKIYIF
Sbjct: 1   MAPKVEKKPAEKKPAAXXXXXXXXXXXXXXXXXXXXXXGAAGDKKKRVKKSVETYKIYIF 60

Query: 99  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 158
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LAR NKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARINKKPTITSREIQTAVRLVL 120

Query: 159 PGELAKHAVSEGTKAVTKFTSS 181
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

The following BLAST results are available for this feature:

BLAST of CsaV3_1G014090 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139453.1	9.0e-46	99.30	PREDICTED: histone H2B.7-like [Cucumis sativus] >KGN64858.1 Histone H2B [Cucumis...	[more]
XP_011654070.1	9.0e-46	99.30	PREDICTED: histone H2B.7 [Cucumis sativus] >XP_011654073.1 PREDICTED: histone H2...	[more]
XP_016903018.1	9.0e-46	99.30	PREDICTED: LOW QUALITY PROTEIN: histone H2B.7-like [Cucumis melo]	[more]
XP_022152883.1	9.0e-46	99.30	histone H2B.7 [Momordica charantia]	[more]
XP_022964641.1	9.0e-46	99.30	histone H2B.7-like [Cucurbita moschata] >XP_022970349.1 histone H2B.7-like [Cucu...	[more]

BLAST of CsaV3_1G014090 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G02570.1	5.4e-45	90.85	Histone superfamily protein	[more]
AT1G07790.1	4.6e-44	100.00	Histone superfamily protein	[more]
AT2G28720.1	1.0e-43	98.89	Histone superfamily protein	[more]
AT5G59910.1	1.0e-43	98.89	Histone superfamily protein	[more]
AT3G46030.1	1.7e-43	98.89	Histone superfamily protein	[more]

BLAST of CsaV3_1G014090 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LZ45\|H2B9_ARATH	9.8e-44	90.85	Histone H2B.9 OS=Arabidopsis thaliana OX=3702 GN=At5g02570 PE=1 SV=3	[more]
sp\|Q9LQQ4\|H2B1_ARATH	8.3e-43	100.00	Histone H2B.1 OS=Arabidopsis thaliana OX=3702 GN=At1g07790 PE=1 SV=3	[more]
sp\|A2XF66\|H2B1_ORYSI	1.1e-42	78.29	Histone H2B.1 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_010709 PE=3 SV=1	[more]
sp\|A3AGM4\|H2B1_ORYSJ	1.1e-42	78.29	Histone H2B.1 OS=Oryza sativa subsp. japonica OX=39947 GN=H2B1 PE=1 SV=1	[more]
sp\|P40283\|H2B11_ARATH	1.8e-42	98.89	Histone H2B.11 OS=Arabidopsis thaliana OX=3702 GN=At5g59910 PE=1 SV=5	[more]

BLAST of CsaV3_1G014090 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LV55\|A0A0A0LV55_CUCSA	6.0e-46	99.30	Histone H2B OS=Cucumis sativus OX=3659 GN=Csa_1G132130 PE=3 SV=1	[more]
tr\|A0A1S4E463\|A0A1S4E463_CUCME	6.0e-46	99.30	Histone H2B OS=Cucumis melo OX=3656 GN=LOC103500805 PE=3 SV=1	[more]
tr\|A0A0A0LST8\|A0A0A0LST8_CUCSA	6.0e-46	99.30	Histone H2B OS=Cucumis sativus OX=3659 GN=Csa_1G132680 PE=3 SV=1	[more]
tr\|A0A2G2ZYA2\|A0A2G2ZYA2_CAPAN	1.6e-43	87.32	Histone H2B OS=Capsicum annuum OX=4072 GN=LOC107863599 PE=3 SV=1	[more]
tr\|A0A1U8G135\|A0A1U8G135_CAPAN	1.6e-43	87.32	Histone H2B OS=Capsicum annuum OX=4072 GN=T459_09055 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046982	protein heterodimerization activity
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0000786	nucleosome

Vocabulary: **INTERPRO**
Term	Definition
IPR007125	Histone_H2A/H2B/H3
IPR009072	Histone-fold
IPR000558	Histone_H2B

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G014090.1	CsaV3_1G014090.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 151..164 score: 92.45 coord: 164..177 score: 92.65 coord: 112..132 score: 75.74 coord: 134..151 score: 76.51 coord: 93..111 score: 80.55
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 83..179 e-value: 1.1E-72 score: 257.5
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 39..180
IPR000558	Histone H2B	PROSITE	PS00357	HISTONE_H2B	coord: 148..170
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 38..180 e-value: 5.2E-57 score: 193.3
IPR009072	Histone-fold	SUPERFAMILY	SSF47113	Histone-fold	coord: 65..180
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 43..156 e-value: 6.2E-22 score: 78.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..87
None	No IPR available	PANTHER	PTHR23428:SF97	HISTONE H2B.11-RELATED	coord: 39..180

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G014090	CSPI01G13910	Wild cucumber (PI 183967)	cpicucB001
CsaV3_1G014090	CmaCh13G002590	Cucurbita maxima (Rimu)	cmacucB0234
CsaV3_1G014090	CmaCh12G008130	Cucurbita maxima (Rimu)	cmacucB0188
CsaV3_1G014090	CmoCh12G008220	Cucurbita moschata (Rifu)	cmocucB0172
CsaV3_1G014090	CmoCh13G002650	Cucurbita moschata (Rifu)	cmocucB0221
CsaV3_1G014090	Cp4.1LG07g06730	Cucurbita pepo (Zucchini)	cpecucB0996
CsaV3_1G014090	Cp4.1LG20g07320	Cucurbita pepo (Zucchini)	cpecucB0635
CsaV3_1G014090	CsGy1G013920	Cucumber (Gy14) v2	cgybcucB002
CsaV3_1G014090	Carg23703	Silver-seed gourd	carcucB0192
CsaV3_1G014090	Cla001860	Watermelon (97103) v1	cucwmB060
CsaV3_1G014090	ClCG01G013820	Watermelon (Charleston Gray)	cucwcgB016
CsaV3_1G014090	Lsi03G000550	Bottle gourd (USVL1VR-Ls)	cuclsiB048
CsaV3_1G014090	Cla97C01G012800	Watermelon (97103) v2	cucwmbB002
CsaV3_1G014090	Bhi08G000126	Wax gourd	cucwgoB051

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G014090	Cucumber (Gy14) v1	cgycucB322
CsaV3_1G014090	Melon (DHL92) v3.5.1	cucmeB010
CsaV3_1G014090	Melon (DHL92) v3.6.1	cucmedB009