Cp4.1LG20g07320 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG20g07320
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Histone H2B
Location	Cp4.1LG20 : 6149798 .. 6150226 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCCCAAGGCTGAGAAGAAGCCTGCCGAGAAGAAGCCAGCGGCGGAGGAGAAGAAGGCCGAGAAGGCTCCGGCGGAGAAGAAGCCGAGAGCCGAGAAGAAGCTTCCCAAAGACGCCTCTGACAAGAAGAAGAAGAAGGCCAAGAAGAGTATCGAGACTTACAAGATCTACATCTTTAAGGTTCTCAAGCAAGTTCATCCTGATATCGGAATCTCCAGCAAGGCCATGGGGATTATGAACAGTTTCATCAACGACATTTTTGAGAAACTCGCTCAGGAATCCTCTAAACTCGCTCGCTACAACAAGAAGCCGACCATTACCTCTCGGGAGATCCAAACGGCCGTGCGCCTTGTTCTTCCCGGTGAGTTGGCCAAACACGCCGTCTCCGAGGGTACTAAGGCTGTTACCAAATTTACTAGCTCTTAG

mRNA sequence

ATGGCGCCCAAGGCTGAGAAGAAGCCTGCCGAGAAGAAGCCAGCGGCGGAGGAGAAGAAGGCCGAGAAGGCTCCGGCGGAGAAGAAGCCGAGAGCCGAGAAGAAGCTTCCCAAAGACGCCTCTGACAAGAAGAAGAAGAAGGCCAAGAAGAGTATCGAGACTTACAAGATCTACATCTTTAAGGTTCTCAAGCAAGTTCATCCTGATATCGGAATCTCCAGCAAGGCCATGGGGATTATGAACAGTTTCATCAACGACATTTTTGAGAAACTCGCTCAGGAATCCTCTAAACTCGCTCGCTACAACAAGAAGCCGACCATTACCTCTCGGGAGATCCAAACGGCCGTGCGCCTTGTTCTTCCCGGTGAGTTGGCCAAACACGCCGTCTCCGAGGGTACTAAGGCTGTTACCAAATTTACTAGCTCTTAG

Coding sequence (CDS)

ATGGCGCCCAAGGCTGAGAAGAAGCCTGCCGAGAAGAAGCCAGCGGCGGAGGAGAAGAAGGCCGAGAAGGCTCCGGCGGAGAAGAAGCCGAGAGCCGAGAAGAAGCTTCCCAAAGACGCCTCTGACAAGAAGAAGAAGAAGGCCAAGAAGAGTATCGAGACTTACAAGATCTACATCTTTAAGGTTCTCAAGCAAGTTCATCCTGATATCGGAATCTCCAGCAAGGCCATGGGGATTATGAACAGTTTCATCAACGACATTTTTGAGAAACTCGCTCAGGAATCCTCTAAACTCGCTCGCTACAACAAGAAGCCGACCATTACCTCTCGGGAGATCCAAACGGCCGTGCGCCTTGTTCTTCCCGGTGAGTTGGCCAAACACGCCGTCTCCGAGGGTACTAAGGCTGTTACCAAATTTACTAGCTCTTAG

Protein sequence

MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKKAKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS

Homology

[Close]

BLAST of Cp4.1LG20g07320 vs. Swiss-Prot
Match: H2B7_ARATH (Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030 PE=1 SV=3)

HSP 1 Score: 224.9 bits (572), Expect = 5.4e-58
Identity = 130/145 (89.66%), Postives = 134/145 (92.41%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDAS---DKKKKKAKKSIETYKI 60
           MAPKAEKKPAEKKP  E+ KAEKAPAEKKP+A KKLPK+A    DKKKK  KKS+ETYKI
Sbjct: 1   MAPKAEKKPAEKKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSVETYKI 60

Query: 61  YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVR 120
           YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSREIQTAVR
Sbjct: 61  YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVR 120

Query: 121 LVLPGELAKHAVSEGTKAVTKFTSS 143
           LVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 LVLPGELAKHAVSEGTKAVTKFTSS 145

[Close]

BLAST of Cp4.1LG20g07320 vs. Swiss-Prot
Match: H2B_GOSHI (Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 222.2 bits (565), Expect = 3.5e-57
Identity = 130/147 (88.44%), Postives = 137/147 (93.20%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKK-AEKAPAEKKPRAEKKLPKD----ASDKKKKKAKKSIETY 60
           MAPKAEKKPAEKKPA E+K  AEKAPAEKKP+A KKLPK+    A DKKKK+ KKS+ETY
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRVKKSVETY 60

Query: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120
           KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTA
Sbjct: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTA 120

Query: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 143
           VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 147

[Close]

BLAST of Cp4.1LG20g07320 vs. Swiss-Prot
Match: H2B11_ARATH (Histone H2B.11 OS=Arabidopsis thaliana GN=At5g59910 PE=1 SV=5)

HSP 1 Score: 221.9 bits (564), Expect = 4.6e-57
Identity = 131/150 (87.33%), Postives = 137/150 (91.33%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEE-----KKAEKAPAEKKPRAEKKLPKDAS---DKKKKKAKKSI 60
           MAPKAEKKPAEKKPA+E+      KAEKAPAEKKP+A KKLPK+A    DKKKK  KKS+
Sbjct: 1   MAPKAEKKPAEKKPASEKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSV 60

Query: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 120
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREI
Sbjct: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREI 120

Query: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of Cp4.1LG20g07320 vs. Swiss-Prot
Match: H2B6_ARATH (Histone H2B.6 OS=Arabidopsis thaliana GN=H2B PE=1 SV=3)

HSP 1 Score: 221.1 bits (562), Expect = 7.8e-57
Identity = 131/150 (87.33%), Postives = 136/150 (90.67%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEE-----KKAEKAPAEKKPRAEKKLPKDAS---DKKKKKAKKSI 60
           MAP+AEKKPAEKKPAAE+      KAEKAPAEKKP+A KKLPK+A    DKKKK  KKS+
Sbjct: 1   MAPRAEKKPAEKKPAAEKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSV 60

Query: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 120
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSREI
Sbjct: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREI 120

Query: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of Cp4.1LG20g07320 vs. Swiss-Prot
Match: H2B1_MEDTR (Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 220.7 bits (561), Expect = 1.0e-56
Identity = 129/148 (87.16%), Postives = 137/148 (92.57%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKK--AEKAPAEKKPRAEKKLPKD----ASDKKKKKAKKSIET 60
           MAPK EKKPAEKKPA E+K   AEKAPAEKKP+A KKLPK+    A +KKKK++KKS+ET
Sbjct: 1   MAPKGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGEKKKKRSKKSVET 60

Query: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT 120
           YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQT
Sbjct: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT 120

Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]

BLAST of Cp4.1LG20g07320 vs. TrEMBL
Match: A0A0A0LV55_CUCSA (Histone H2B OS=Cucumis sativus GN=Csa_1G132130 PE=3 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 2.3e-63
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKKAKKSIETYKIYIF 60
           MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKK+AKKSIETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]

BLAST of Cp4.1LG20g07320 vs. TrEMBL
Match: A0A0A0LST8_CUCSA (Histone H2B OS=Cucumis sativus GN=Csa_1G132680 PE=3 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 6.6e-63
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKKAKKSIETYKIYIF 60
           MAPKAEKKPAEKKPAAEEKKAEK PAEKKPRAEKKLPKDASDKKKK+AKKSIETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEKKAEKTPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]

BLAST of Cp4.1LG20g07320 vs. TrEMBL
Match: A0A0D2SV51_GOSRA (Histone H2B OS=Gossypium raimondii GN=B456_006G104400 PE=3 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 5.3e-60
Identity = 136/142 (95.77%), Postives = 140/142 (98.59%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKKAKKSIETYKIYIF 60
           MAPKAEKKPAEKKPA EEKKAEKAPAEKKPRAEKKLPK+A DKKKK++KKSIETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPA-EEKKAEKAPAEKKPRAEKKLPKEAGDKKKKRSKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 141

[Close]

BLAST of Cp4.1LG20g07320 vs. TrEMBL
Match: A0A0D2S0C9_GOSRA (Histone H2B OS=Gossypium raimondii GN=B456_006G104500 PE=3 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.2e-59
Identity = 135/142 (95.07%), Postives = 140/142 (98.59%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKKAKKSIETYKIYIF 60
           MAPKAEKKPAEKKPA EEKKAEKAPAEKKPRAEKKLPK+A DK+KK++KKSIETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPA-EEKKAEKAPAEKKPRAEKKLPKEAGDKRKKRSKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 141

[Close]

BLAST of Cp4.1LG20g07320 vs. TrEMBL
Match: A0A0D2NPV9_GOSRA (Histone H2B OS=Gossypium raimondii GN=B456_006G104600 PE=3 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.2e-59
Identity = 135/142 (95.07%), Postives = 140/142 (98.59%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKKAKKSIETYKIYIF 60
           MAPKAEKKPAEKKPA EEKKA+KAPAEKKPRAEKKLPK+A DKKKK++KKSIETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPA-EEKKADKAPAEKKPRAEKKLPKEAGDKKKKRSKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 141

[Close]

BLAST of Cp4.1LG20g07320 vs. TAIR10
Match: AT3G46030.1 (AT3G46030.1 Histone superfamily protein)

HSP 1 Score: 224.9 bits (572), Expect = 3.0e-59
Identity = 130/145 (89.66%), Postives = 134/145 (92.41%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDAS---DKKKKKAKKSIETYKI 60
           MAPKAEKKPAEKKP  E+ KAEKAPAEKKP+A KKLPK+A    DKKKK  KKS+ETYKI
Sbjct: 1   MAPKAEKKPAEKKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSVETYKI 60

Query: 61  YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVR 120
           YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSREIQTAVR
Sbjct: 61  YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVR 120

Query: 121 LVLPGELAKHAVSEGTKAVTKFTSS 143
           LVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 LVLPGELAKHAVSEGTKAVTKFTSS 145

[Close]

BLAST of Cp4.1LG20g07320 vs. TAIR10
Match: AT5G59910.1 (AT5G59910.1 Histone superfamily protein)

HSP 1 Score: 221.9 bits (564), Expect = 2.6e-58
Identity = 131/150 (87.33%), Postives = 137/150 (91.33%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEE-----KKAEKAPAEKKPRAEKKLPKDAS---DKKKKKAKKSI 60
           MAPKAEKKPAEKKPA+E+      KAEKAPAEKKP+A KKLPK+A    DKKKK  KKS+
Sbjct: 1   MAPKAEKKPAEKKPASEKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSV 60

Query: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 120
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSREI
Sbjct: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREI 120

Query: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of Cp4.1LG20g07320 vs. TAIR10
Match: AT3G45980.1 (AT3G45980.1 Histone superfamily protein)

HSP 1 Score: 221.1 bits (562), Expect = 4.4e-58
Identity = 131/150 (87.33%), Postives = 136/150 (90.67%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEE-----KKAEKAPAEKKPRAEKKLPKDAS---DKKKKKAKKSI 60
           MAP+AEKKPAEKKPAAE+      KAEKAPAEKKP+A KKLPK+A    DKKKK  KKS+
Sbjct: 1   MAPRAEKKPAEKKPAAEKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSV 60

Query: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREI 120
           ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSREI
Sbjct: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREI 120

Query: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of Cp4.1LG20g07320 vs. TAIR10
Match: AT1G07790.1 (AT1G07790.1 Histone superfamily protein)

HSP 1 Score: 220.7 bits (561), Expect = 5.7e-58
Identity = 130/148 (87.84%), Postives = 137/148 (92.57%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEE-----KKAEKAPAEKKPRAEKKLP-KDASDKKKKKAKKSIET 60
           MAP+AEKKPAEKK AAE      K AEKAPAEKKP+A KKLP K+A DKKKK++KK++ET
Sbjct: 1   MAPRAEKKPAEKKTAAERPVEENKAAEKAPAEKKPKAGKKLPPKEAGDKKKKRSKKNVET 60

Query: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT 120
           YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT
Sbjct: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT 120

Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]

BLAST of Cp4.1LG20g07320 vs. TAIR10
Match: AT2G28720.1 (AT2G28720.1 Histone superfamily protein)

HSP 1 Score: 216.9 bits (551), Expect = 8.3e-57
Identity = 130/151 (86.09%), Postives = 135/151 (89.40%), Query Frame = 1


Query: 1   MAPKA-----EKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDAS----DKKKKKAKKS 60
           MAPKA     EKKPAEK PA EEK AEKAPAEKKP+A KKLPK+A     +KKKK+ KKS
Sbjct: 1   MAPKAGKKPAEKKPAEKAPAEEEKVAEKAPAEKKPKAGKKLPKEAVTGGVEKKKKRVKKS 60

Query: 61  IETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSRE 120
            ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSRE
Sbjct: 61  TETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSRE 120

Query: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
           IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151

[Close]

BLAST of Cp4.1LG20g07320 vs. NCBI nr
Match: gi|778659255|ref|XP_011654070.1| (PREDICTED: histone H2B.7 [Cucumis sativus])

HSP 1 Score: 249.6 bits (636), Expect = 3.3e-63
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKKAKKSIETYKIYIF 60
           MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKK+AKKSIETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]

BLAST of Cp4.1LG20g07320 vs. NCBI nr
Match: gi|449443375|ref|XP_004139453.1| (PREDICTED: histone H2B.7-like [Cucumis sativus])

HSP 1 Score: 248.1 bits (632), Expect = 9.5e-63
Identity = 140/142 (98.59%), Postives = 141/142 (99.30%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKKAKKSIETYKIYIF 60
           MAPKAEKKPAEKKPAAEEKKAEK PAEKKPRAEKKLPKDASDKKKK+AKKSIETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPAAEEKKAEKTPAEKKPRAEKKLPKDASDKKKKRAKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 142

[Close]

BLAST of Cp4.1LG20g07320 vs. NCBI nr
Match: gi|823172029|ref|XP_012484994.1| (PREDICTED: histone H2B-like [Gossypium raimondii])

HSP 1 Score: 238.4 bits (607), Expect = 7.5e-60
Identity = 136/142 (95.77%), Postives = 140/142 (98.59%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKKAKKSIETYKIYIF 60
           MAPKAEKKPAEKKPA EEKKAEKAPAEKKPRAEKKLPK+A DKKKK++KKSIETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPA-EEKKAEKAPAEKKPRAEKKLPKEAGDKKKKRSKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 141

[Close]

BLAST of Cp4.1LG20g07320 vs. NCBI nr
Match: gi|823172056|ref|XP_012485001.1| (PREDICTED: histone H2B-like [Gossypium raimondii])

HSP 1 Score: 237.3 bits (604), Expect = 1.7e-59
Identity = 135/142 (95.07%), Postives = 140/142 (98.59%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKKAKKSIETYKIYIF 60
           MAPKAEKKPAEKKPA EEKKA+KAPAEKKPRAEKKLPK+A DKKKK++KKSIETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPA-EEKKADKAPAEKKPRAEKKLPKEAGDKKKKRSKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 141

[Close]

BLAST of Cp4.1LG20g07320 vs. NCBI nr
Match: gi|823172032|ref|XP_012484995.1| (PREDICTED: histone H2B-like [Gossypium raimondii])

HSP 1 Score: 237.3 bits (604), Expect = 1.7e-59
Identity = 135/142 (95.07%), Postives = 140/142 (98.59%), Query Frame = 1


Query: 1   MAPKAEKKPAEKKPAAEEKKAEKAPAEKKPRAEKKLPKDASDKKKKKAKKSIETYKIYIF 60
           MAPKAEKKPAEKKPA EEKKAEKAPAEKKPRAEKKLPK+A DK+KK++KKSIETYKIYIF
Sbjct: 1   MAPKAEKKPAEKKPA-EEKKAEKAPAEKKPRAEKKLPKEAGDKRKKRSKKSIETYKIYIF 60

Query: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVL 120
           KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVL
Sbjct: 61  KVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVL 120

Query: 121 PGELAKHAVSEGTKAVTKFTSS 143
           PGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 PGELAKHAVSEGTKAVTKFTSS 141

The following BLAST results are available for this feature:

BLAST of Cp4.1LG20g07320 vs. Swiss-Prot


Match Name	E-value	Identity	Description
H2B7_ARATH	5.4e-58	89.66	Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030 PE=1 SV=3	[more]
H2B_GOSHI	3.5e-57	88.44	Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV=3	[more]
H2B11_ARATH	4.6e-57	87.33	Histone H2B.11 OS=Arabidopsis thaliana GN=At5g59910 PE=1 SV=5	[more]
H2B6_ARATH	7.8e-57	87.33	Histone H2B.6 OS=Arabidopsis thaliana GN=H2B PE=1 SV=3	[more]
H2B1_MEDTR	1.0e-56	87.16	Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3	[more]

BLAST of Cp4.1LG20g07320 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LV55_CUCSA	2.3e-63	99.30	Histone H2B OS=Cucumis sativus GN=Csa_1G132130 PE=3 SV=1	[more]
A0A0A0LST8_CUCSA	6.6e-63	98.59	Histone H2B OS=Cucumis sativus GN=Csa_1G132680 PE=3 SV=1	[more]
A0A0D2SV51_GOSRA	5.3e-60	95.77	Histone H2B OS=Gossypium raimondii GN=B456_006G104400 PE=3 SV=1	[more]
A0A0D2S0C9_GOSRA	1.2e-59	95.07	Histone H2B OS=Gossypium raimondii GN=B456_006G104500 PE=3 SV=1	[more]
A0A0D2NPV9_GOSRA	1.2e-59	95.07	Histone H2B OS=Gossypium raimondii GN=B456_006G104600 PE=3 SV=1	[more]

BLAST of Cp4.1LG20g07320 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G46030.1	3.0e-59	89.66	Histone superfamily protein	[more]
AT5G59910.1	2.6e-58	87.33	Histone superfamily protein	[more]
AT3G45980.1	4.4e-58	87.33	Histone superfamily protein	[more]
AT1G07790.1	5.7e-58	87.84	Histone superfamily protein	[more]
AT2G28720.1	8.3e-57	86.09	Histone superfamily protein	[more]

BLAST of Cp4.1LG20g07320 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778659255\|ref\|XP_011654070.1\|	3.3e-63	99.30	PREDICTED: histone H2B.7 [Cucumis sativus]	[more]
gi\|449443375\|ref\|XP_004139453.1\|	9.5e-63	98.59	PREDICTED: histone H2B.7-like [Cucumis sativus]	[more]
gi\|823172029\|ref\|XP_012484994.1\|	7.5e-60	95.77	PREDICTED: histone H2B-like [Gossypium raimondii]	[more]
gi\|823172056\|ref\|XP_012485001.1\|	1.7e-59	95.07	PREDICTED: histone H2B-like [Gossypium raimondii]	[more]
gi\|823172032\|ref\|XP_012484995.1\|	1.7e-59	95.07	PREDICTED: histone H2B-like [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046982	protein heterodimerization activity
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0000786	nucleosome

Vocabulary: **INTERPRO**
Term	Definition
IPR009072	Histone-fold
IPR007125	Histone_H2A/H2B/H3
IPR000558	Histone_H2B

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG20g07320.1	Cp4.1LG20g07320.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 126..139 score: 5.3E-49coord: 74..94 score: 5.3E-49coord: 96..113 score: 5.3E-49coord: 113..126 score: 5.3E-49coord: 55..73 score: 5.3
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 13..142 score: 1.4E
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 45..141 score: 2.0
IPR000558	Histone H2B	PROSITE	PS00357	HISTONE_H2B	coord: 110..132 scor
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 5..118 score: 1.4
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 22..142 score: 6.0
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 27..142 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG20g07320	CmaCh12G008130	Cucurbita maxima (Rimu)	cmacpeB189
Cp4.1LG20g07320	CmaCh13G002590	Cucurbita maxima (Rimu)	cmacpeB236
Cp4.1LG20g07320	CmoCh12G008220	Cucurbita moschata (Rifu)	cmocpeB165
Cp4.1LG20g07320	CmoCh13G002650	Cucurbita moschata (Rifu)	cmocpeB203
Cp4.1LG20g07320	Cla001860	Watermelon (97103) v1	cpewmB515
Cp4.1LG20g07320	Csa1G132130	Cucumber (Chinese Long) v2	cpecuB516
Cp4.1LG20g07320	MELO3C004868	Melon (DHL92) v3.5.1	cpemeB480
Cp4.1LG20g07320	ClCG01G013830	Watermelon (Charleston Gray)	cpewcgB455
Cp4.1LG20g07320	CSPI01G13910	Wild cucumber (PI 183967)	cpecpiB518
Cp4.1LG20g07320	Lsi03G000550	Bottle gourd (USVL1VR-Ls)	cpelsiB429
Cp4.1LG20g07320	MELO3C004866.2	Melon (DHL92) v3.6.1	cpemedB563
Cp4.1LG20g07320	CsaV3_1G014090	Cucumber (Chinese Long) v3	cpecucB0635
Cp4.1LG20g07320	Bhi08G000126	Wax gourd	cpewgoB0636
Cp4.1LG20g07320	CsGy1G013920	Cucumber (Gy14) v2	cgybcpeB082
Cp4.1LG20g07320	Carg23703	Silver-seed gourd	carcpeB0239

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG20g07320	Cp4.1LG07g06730	Cucurbita pepo (Zucchini)	cpecpeB446

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG20g07320	Silver-seed gourd	carcpeB1278
Cp4.1LG20g07320	Cucumber (Chinese Long) v3	cpecucB0631
Cp4.1LG20g07320	Wax gourd	cpewgoB0660
Cp4.1LG20g07320	Cucumber (Gy14) v1	cgycpeB0565
Cp4.1LG20g07320	Cucumber (Gy14) v2	cgybcpeB076