CsGy6G017500 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G017500
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Dof zinc finger protein 4
Location	Chr6 : 18309728 .. 18310474 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTCTCCACCAATGTCCGACCACCAACAACTCCCTCCTCCTCCCCCGCCATTCCCCTCCCATCTACAACGCAAATGGAAACCCCATCTCGAAGCAGCCCCAAATTGCCCCCGCTGCGCCTCCACAAACACTAAATTCTGCTATTACAACAACTACAGCCTCTCCCAACCCAGATACTTCTGTAAATCCTGTCGCCGCTACTGGACCAAAGGCGGCTCCCTCCGCAACGTCCCCGTCGGTGGTGGCTGCCGCAAGAGCCGCCGTGCCAAGTCCTCAAAATCCTCCGCCATCTCCCGTCCTTCAAAACCCGACCTTTCTTCCCAAACCACCGACTCCTCCTCCTCTGCCTCCGATATCGATCTCGCCGCTGTGTTCGCCCGATTTTTGAACAGTGAGCCTCAGACGTTGACTAGCTCGCCGGAATCGGTTGACCCATTGGAGATTTCCGAGATCTTCTTGGAAGGTCTCTCAGATATGCTATTGGACGATGAAAATCAAAGGGAAGAAGAAAAACAGGGGATCCCGGGAAGTTACGAGAATGTTTCATTTGGGTTAGAAACAGAGTTGGGGATTGATGAAGAAGTATGGGCGTCACCAGAAATGCAAGAACAAGTTCAAGAATTGGACTCATTTTCTTGCAATTACTATGCGAATGACTTGCGGGTTTCTGATCAGTTCTGTCAAGTGGGAGATAACTGGAGCTCATTCGACTTTGCAGCCGTAAATAATGTCGAATATTTTTAA

mRNA sequence

ATGTTCTCTCCACCAATGTCCGACCACCAACAACTCCCTCCTCCTCCCCCGCCATTCCCCTCCCATCTACAACGCAAATGGAAACCCCATCTCGAAGCAGCCCCAAATTGCCCCCGCTGCGCCTCCACAAACACTAAATTCTGCTATTACAACAACTACAGCCTCTCCCAACCCAGATACTTCTGTAAATCCTGTCGCCGCTACTGGACCAAAGGCGGCTCCCTCCGCAACGTCCCCGTCGGTGGTGGCTGCCGCAAGAGCCGCCGTGCCAAGTCCTCAAAATCCTCCGCCATCTCCCGTCCTTCAAAACCCGACCTTTCTTCCCAAACCACCGACTCCTCCTCCTCTGCCTCCGATATCGATCTCGCCGCTGTGTTCGCCCGATTTTTGAACAGTGAGCCTCAGACGTTGACTAGCTCGCCGGAATCGGTTGACCCATTGGAGATTTCCGAGATCTTCTTGGAAGGTCTCTCAGATATGCTATTGGACGATGAAAATCAAAGGGAAGAAGAAAAACAGGGGATCCCGGGAAGTTACGAGAATGTTTCATTTGGGTTAGAAACAGAGTTGGGGATTGATGAAGAAGTATGGGCGTCACCAGAAATGCAAGAACAAGTTCAAGAATTGGACTCATTTTCTTGCAATTACTATGCGAATGACTTGCGGGTTTCTGATCAGTTCTGTCAAGTGGGAGATAACTGGAGCTCATTCGACTTTGCAGCCGTAAATAATGTCGAATATTTTTAA

Coding sequence (CDS)

ATGTTCTCTCCACCAATGTCCGACCACCAACAACTCCCTCCTCCTCCCCCGCCATTCCCCTCCCATCTACAACGCAAATGGAAACCCCATCTCGAAGCAGCCCCAAATTGCCCCCGCTGCGCCTCCACAAACACTAAATTCTGCTATTACAACAACTACAGCCTCTCCCAACCCAGATACTTCTGTAAATCCTGTCGCCGCTACTGGACCAAAGGCGGCTCCCTCCGCAACGTCCCCGTCGGTGGTGGCTGCCGCAAGAGCCGCCGTGCCAAGTCCTCAAAATCCTCCGCCATCTCCCGTCCTTCAAAACCCGACCTTTCTTCCCAAACCACCGACTCCTCCTCCTCTGCCTCCGATATCGATCTCGCCGCTGTGTTCGCCCGATTTTTGAACAGTGAGCCTCAGACGTTGACTAGCTCGCCGGAATCGGTTGACCCATTGGAGATTTCCGAGATCTTCTTGGAAGGTCTCTCAGATATGCTATTGGACGATGAAAATCAAAGGGAAGAAGAAAAACAGGGGATCCCGGGAAGTTACGAGAATGTTTCATTTGGGTTAGAAACAGAGTTGGGGATTGATGAAGAAGTATGGGCGTCACCAGAAATGCAAGAACAAGTTCAAGAATTGGACTCATTTTCTTGCAATTACTATGCGAATGACTTGCGGGTTTCTGATCAGTTCTGTCAAGTGGGAGATAACTGGAGCTCATTCGACTTTGCAGCCGTAAATAATGTCGAATATTTTTAA

Protein sequence

MFSPPMSDHQQLPPPPPPFPSHLQRKWKPHLEAAPNCPRCASTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNVPVGGGCRKSRRAKSSKSSAISRPSKPDLSSQTTDSSSSASDIDLAAVFARFLNSEPQTLTSSPESVDPLEISEIFLEGLSDMLLDDENQREEEKQGIPGSYENVSFGLETELGIDEEVWASPEMQEQVQELDSFSCNYYANDLRVSDQFCQVGDNWSSFDFAAVNNVEYF

Homology

[Close]

BLAST of CsGy6G017500 vs. NCBI nr
Match: XP_004148826.2 (PREDICTED: dof zinc finger protein DOF1.2 [Cucumis sativus] >KGN47477.1 hypothetical protein Csa_6G338090 [Cucumis sativus])

HSP 1 Score: 419.9 bits (1078), Expect = 6.2e-114
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 0


Query: 1   MFSPPMSDHXXXXXXXXXFPSHLQRKWKPHLEAAPNCPRCASTNTKFCYYNNYSLSQPRY 60
           MFSPPMSDHXXXXXXXXXFPSHLQRKWKPHLEAAPNCPRCASTNTKFCYYNNYSLSQPRY
Sbjct: 1   MFSPPMSDHXXXXXXXXXFPSHLQRKWKPHLEAAPNCPRCASTNTKFCYYNNYSLSQPRY 60

Query: 61  FCKSCRRYWTKGGSLRNVPVGGGCRKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXI 120
           FCKSCRRYWTKGGSLRNVPVGGGCRKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXI
Sbjct: 61  FCKSCRRYWTKGGSLRNVPVGGGCRKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXI 120

Query: 121 DLAAVFARFLNSEPQTLTSSPESVDPLEISEIFLEGLSDMLLDDENQREEEKQGIPGSYE 180
           DLAAVFARFLNSEPQTLTSSPESVDPLEISEIFLEGLSDMLLDDENQREEEKQGIPGSYE
Sbjct: 121 DLAAVFARFLNSEPQTLTSSPESVDPLEISEIFLEGLSDMLLDDENQREEEKQGIPGSYE 180

Query: 181 NVSFGLETELGIDEEVWASPEMQEQVQELDSFSCNYYANDLRVSDQFCQVGDNWSSFDFA 240
           NVSFGLETELGIDEEVWASPEMQEQVQELDSFSCNYYANDLRVSDQFCQVGDNWSSFDFA
Sbjct: 181 NVSFGLETELGIDEEVWASPEMQEQVQELDSFSCNYYANDLRVSDQFCQVGDNWSSFDFA 240

Query: 241 AVNNVEYF 249
           AVNNVEYF
Sbjct: 241 AVNNVEYF 248

[Close]

BLAST of CsGy6G017500 vs. NCBI nr
Match: XP_022993920.1 (dof zinc finger protein DOF1.2-like [Cucurbita maxima])

HSP 1 Score: 317.8 bits (813), Expect = 3.3e-83
Identity = 180/255 (70.59%), Postives = 197/255 (77.25%), Query Frame = 0


Query: 1   MFSPPMSDH--XXXXXXXXXFPSHLQRKWKPHLEAAPNCPRCASTNTKFCYYNNYSLSQP 60
           MFS  MSDH    XXXXXXXF SHL+RKWKPHLE APNCPRCAS NTKFCYYNNYSLSQP
Sbjct: 1   MFSTEMSDHHQLPXXXXXXXFASHLERKWKPHLETAPNCPRCASANTKFCYYNNYSLSQP 60

Query: 61  RYFCKSCRRYWTKGGSLRNVPVGGGCRKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           RYFCKSCRRYWTKGGSLRNVPVGGGCRKS     XXXXXXXXXX                
Sbjct: 61  RYFCKSCRRYWTKGGSLRNVPVGGGCRKSRRTRSXXXXXXXXXXNPDTSTQITESSSNGP 120

Query: 121 XIDLAAVFARFLNSEP-----QTLTSSPESVDPLEISEIFLEGLSDMLLDDENQREEEKQ 180
            IDLAAVFAR+LN+ P      TLTSSPESVDPLE  EIF EGL+D+L+++ENQ +E+KQ
Sbjct: 121 DIDLAAVFARYLNTTPPSTEHHTLTSSPESVDPLENCEIFFEGLTDLLIEEENQPQEQKQ 180

Query: 181 GIPGSYENVSFGLETELGIDEEVWASPEMQEQVQELDSFSCNYYANDLRVSDQFCQVGDN 240
           GI G+YEN  FGL  ELG++EE+WAS    +Q+QELDSFSCNY AN      QFC+VGDN
Sbjct: 181 GIMGNYENTPFGLHAELGVEEELWAS----QQIQELDSFSCNYNAN------QFCEVGDN 240

Query: 241 WSSFDFAAVNNVEYF 249
           WSSFDFAAVNNVEYF
Sbjct: 241 WSSFDFAAVNNVEYF 245

[Close]

BLAST of CsGy6G017500 vs. NCBI nr
Match: XP_022939534.1 (dof zinc finger protein DOF1.2-like [Cucurbita moschata])

HSP 1 Score: 313.9 bits (803), Expect = 4.8e-82
Identity = 182/254 (71.65%), Postives = 196/254 (77.17%), Query Frame = 0


Query: 1   MFSPPMSD-HXXXXXXXXXFPSHLQRKWKPHLEAAPNCPRCASTNTKFCYYNNYSLSQPR 60
           MFS  MSD  XXXXXXXXXF SHL+RKWKPHLE APNCPRCAS NTKFCYYNNYSLSQPR
Sbjct: 1   MFSTAMSDXXXXXXXXXXXFASHLERKWKPHLETAPNCPRCASANTKFCYYNNYSLSQPR 60

Query: 61  YFCKSCRRYWTKGGSLRNVPVGGGCRKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           YFCKSCRRYWTKGGSLRNVPVGGGCRKS     XXXXXXXXXX                 
Sbjct: 61  YFCKSCRRYWTKGGSLRNVPVGGGCRKSRRTRSXXXXXXXXXXNPDTSTQITESSSNGPD 120

Query: 121 IDLAAVFARFLNSEP-----QTLTSSPESVDPLEISEIFLEGLSDMLLDDENQREEEKQG 180
           IDLAAVFAR+LN+ P       LTSSPESVDPLE  EIF EGLSD+L ++ENQ +E+KQG
Sbjct: 121 IDLAAVFARYLNTAPPSTEAHALTSSPESVDPLENCEIFFEGLSDLLTEEENQPQEQKQG 180

Query: 181 IPGSYENVSFGLETELGIDEEVWASPEMQEQVQELDSFSCNYYANDLRVSDQFCQVGDNW 240
           I G+YEN  FGL  ELG++EEVWAS    +Q+QELDSFSCNY AN      QFC+VGDNW
Sbjct: 181 IMGNYENTPFGLHAELGVEEEVWAS----QQIQELDSFSCNYNAN------QFCEVGDNW 240

Query: 241 SSFDFAAVNNVEYF 249
           SSFDFAAVNNVEYF
Sbjct: 241 SSFDFAAVNNVEYF 244

[Close]

BLAST of CsGy6G017500 vs. NCBI nr
Match: XP_023522776.1 (dof zinc finger protein DOF1.2-like [Cucurbita pepo subsp. pepo] >XP_023551553.1 dof zinc finger protein DOF1.2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 313.2 bits (801), Expect = 8.2e-82
Identity = 174/254 (68.50%), Postives = 189/254 (74.41%), Query Frame = 0


Query: 1   MFSPPMSD-HXXXXXXXXXFPSHLQRKWKPHLEAAPNCPRCASTNTKFCYYNNYSLSQPR 60
           MFS  MSD  XXXXXXXXXF SHL+RKWKPHLE APNCPRCAS NTKFCYYNNYSLSQPR
Sbjct: 1   MFSTAMSDXXXXXXXXXXXFASHLERKWKPHLETAPNCPRCASANTKFCYYNNYSLSQPR 60

Query: 61  YFCKSCRRYWTKGGSLRNVPVGGGCRKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           YFCKSCRRYWTKGGSLRNVPVGGGCRKS      XXX                       
Sbjct: 61  YFCKSCRRYWTKGGSLRNVPVGGGCRKSRRTRSSXXXTVSRSTNPNTCTQITESSSNGPD 120

Query: 121 IDLAAVFARFLNSEP-----QTLTSSPESVDPLEISEIFLEGLSDMLLDDENQREEEKQG 180
           IDLAAVFAR+LN+ P       LTSSPESVDPLE  EI  EGLSD+L+++ENQ +E+KQG
Sbjct: 121 IDLAAVFARYLNTAPPSTEAHALTSSPESVDPLENCEILFEGLSDLLIEEENQAQEQKQG 180

Query: 181 IPGSYENVSFGLETELGIDEEVWASPEMQEQVQELDSFSCNYYANDLRVSDQFCQVGDNW 240
           I G+YEN  FGL  ELG++EEVWAS    +Q+QELDSFSCNY AN      QFC+VGDNW
Sbjct: 181 IMGNYENTPFGLHAELGVEEEVWAS----QQIQELDSFSCNYNAN------QFCEVGDNW 240

Query: 241 SSFDFAAVNNVEYF 249
           SSFDFAAVNNVEYF
Sbjct: 241 SSFDFAAVNNVEYF 244

[Close]

BLAST of CsGy6G017500 vs. NCBI nr
Match: XP_022141618.1 (dof zinc finger protein DOF1.2-like [Momordica charantia])

HSP 1 Score: 221.9 bits (564), Expect = 2.5e-54
Identity = 137/255 (53.73%), Postives = 164/255 (64.31%), Query Frame = 0


Query: 1   MFSPPMSDHXXXXXXXXXFPS----HLQRKWKPHLEAAPNCPRCASTNTKFCYYNNYSLS 60
           MFS P+SDH      XXX       HLQRKWKPHLEAAPNCPRCAS NTKFCYYNNYSLS
Sbjct: 1   MFS-PISDHQIPHAPXXXXXXXXXLHLQRKWKPHLEAAPNCPRCASANTKFCYYNNYSLS 60

Query: 61  QPRYFCKSCRRYWTKGGSLRNVPVGGGCRKS--XXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           QPRYFCK+CRRYWTKGGSLRNVPVGGGCRK+                             
Sbjct: 61  QPRYFCKACRRYWTKGGSLRNVPVGGGCRKARRAKSSLPRPHSSDRLNPNSTKSDDASSS 120

Query: 121 XXXXXIDLAAVFARFLNSE------PQTLTSS--PESVDPLEISEIFLEGLSDMLLDDEN 180
                IDLAAVFARFLNS+      P  LTSS  P+++ P   SEIF +GLSD++LD+++
Sbjct: 121 STGSDIDLAAVFARFLNSDDSPPTGPHALTSSPLPDNLTPESNSEIFFDGLSDLILDEQH 180

Query: 181 QREEEKQGIPG-SYENVSFGLETELGI-DEEVWASPEMQEQVQELDSF-SCNYYANDLRV 239
           +++E    I G +Y+N  F    ELG+ D+E+W  PE+     EL+ F +C+     +RV
Sbjct: 181 KKQE----ITGNNYQNFPF----ELGVDDDELW--PEL-----ELEPFANCH-----VRV 234

[Close]

BLAST of CsGy6G017500 vs. TAIR10
Match: AT1G21340.1 (Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 127.9 bits (320), Expect = 8.8e-30
Identity = 87/237 (36.71%), Postives = 113/237 (47.68%), Query Frame = 0


Query: 23  LQRKWKPHLE----AAPNCPRCASTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNV 82
           +  KWK   E     AP CPRCAS+NTKFCYYNNYSLSQPRYFCK CRRYWTKGGSLRN+
Sbjct: 22  IPEKWKLSYEQEAITAPACPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNI 81

Query: 83  PVGGGCRK----SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDLAAVFARFLNSEP 142
           PVGGGCRK                                     IDLAAVFA+++    
Sbjct: 82  PVGGGCRKRSRSRQNSHKRFGRNENRPDGLINQDDGFQSSPPGSDIDLAAVFAQYVTDRS 141

Query: 143 QTLTSSPESVD---PLEISEIFLEGLSDMLLDDENQREEEKQGIPGSYENVSFGLETELG 202
            + T +    D   P+  +   LE LS     D  Q  +   G  G + N++   + +  
Sbjct: 142 PSSTDNTTGSDQDSPITTTTHALESLS----WDICQETDVDLGFYGEFNNLTQKTKEDQE 201

Query: 203 I--------DEEVWASPEM--QEQVQELDSFSCNYYANDLRVSDQFCQVGDNWSSFD 239
           +         EE++    +   +++QE+   S +   + L     F   GDNWSS D
Sbjct: 202 VFGQFLQEDREEIFEFQGLLDDKEIQEILECSFSEEPDQLVSQGSFMINGDNWSSTD 254

[Close]

BLAST of CsGy6G017500 vs. TAIR10
Match: AT3G52440.1 (Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 123.6 bits (309), Expect = 1.7e-28
Identity = 61/112 (54.46%), Postives = 68/112 (60.71%), Query Frame = 0


Query: 27  WKP----HLEAAPNCPRCASTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNVPVGG 86
           W+P    + E  P+CPRC S+NTKFCYYNNYSL+QPRYFCK CRRYWTKGGSLRNVPVGG
Sbjct: 13  WRPNANANAEITPSCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGG 72

Query: 87  GCRKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDLAAVFARFLNSEP 135
           GCRKS                                IDLA V+A FLN +P
Sbjct: 73  GCRKS----RRPKSSSGNNTKTSLTANSGNPGGGSPSIDLALVYANFLNPKP 120

[Close]

BLAST of CsGy6G017500 vs. TAIR10
Match: AT5G60200.1 (TARGET OF MONOPTEROS 6)

HSP 1 Score: 115.2 bits (287), Expect = 5.9e-26
Identity = 48/56 (85.71%), Postives = 52/56 (92.86%), Query Frame = 0


Query: 32  EAAPNCPRCASTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNVPVGGGCRKS 88
           E A  CPRC STNTKFCYYNNYSL+QPRYFCKSCRRYWTKGG+LRN+PVGGGCRK+
Sbjct: 52  ELALRCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNIPVGGGCRKN 107

[Close]

BLAST of CsGy6G017500 vs. TAIR10
Match: AT3G55370.3 (OBF-binding protein 3)

HSP 1 Score: 110.2 bits (274), Expect = 1.9e-24
Identity = 47/59 (79.66%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 29  PHLEAAPNCPRCASTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNVPVGGGCRKS 88
           P  EAA NCPRC STNTKFCY+NNYSL+QPR+FCK+CRRYWT+GGSLRNVPVGGG R++
Sbjct: 115 PLPEAALNCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGSLRNVPVGGGFRRN 173

[Close]

BLAST of CsGy6G017500 vs. TAIR10
Match: AT4G24060.1 (Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 109.0 bits (271), Expect = 4.3e-24
Identity = 45/58 (77.59%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 24 QRKWKPHLEAAPNCPRCASTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNVPVG 82
          +RK +P  + A NCPRC STNTKFCYYNNYSL+QPRYFCK CRRYWT+GGSLRN+PVG
Sbjct: 42 ERKARPEKDQAVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNIPVG 99

[Close]

BLAST of CsGy6G017500 vs. Swiss-Prot
Match: sp|P68349|DOF12_ARATH (Dof zinc finger protein DOF1.2 OS=Arabidopsis thaliana OX=3702 GN=DOF1.2 PE=2 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.6e-28
Identity = 87/237 (36.71%), Postives = 113/237 (47.68%), Query Frame = 0


Query: 23  LQRKWKPHLE----AAPNCPRCASTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNV 82
           +  KWK   E     AP CPRCAS+NTKFCYYNNYSLSQPRYFCK CRRYWTKGGSLRN+
Sbjct: 22  IPEKWKLSYEQEAITAPACPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNI 81

Query: 83  PVGGGCRK----SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDLAAVFARFLNSEP 142
           PVGGGCRK                                     IDLAAVFA+++    
Sbjct: 82  PVGGGCRKRSRSRQNSHKRFGRNENRPDGLINQDDGFQSSPPGSDIDLAAVFAQYVTDRS 141

Query: 143 QTLTSSPESVD---PLEISEIFLEGLSDMLLDDENQREEEKQGIPGSYENVSFGLETELG 202
            + T +    D   P+  +   LE LS     D  Q  +   G  G + N++   + +  
Sbjct: 142 PSSTDNTTGSDQDSPITTTTHALESLS----WDICQETDVDLGFYGEFNNLTQKTKEDQE 201

Query: 203 I--------DEEVWASPEM--QEQVQELDSFSCNYYANDLRVSDQFCQVGDNWSSFD 239
           +         EE++    +   +++QE+   S +   + L     F   GDNWSS D
Sbjct: 202 VFGQFLQEDREEIFEFQGLLDDKEIQEILECSFSEEPDQLVSQGSFMINGDNWSSTD 254

[Close]

BLAST of CsGy6G017500 vs. Swiss-Prot
Match: sp|Q9SVC5|DOF35_ARATH (Dof zinc finger protein DOF3.5 OS=Arabidopsis thaliana OX=3702 GN=DOF3.5 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.0e-27
Identity = 61/112 (54.46%), Postives = 68/112 (60.71%), Query Frame = 0


Query: 27  WKP----HLEAAPNCPRCASTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNVPVGG 86
           W+P    + E  P+CPRC S+NTKFCYYNNYSL+QPRYFCK CRRYWTKGGSLRNVPVGG
Sbjct: 13  WRPNANANAEITPSCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGG 72

Query: 87  GCRKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDLAAVFARFLNSEP 135
           GCRKS                                IDLA V+A FLN +P
Sbjct: 73  GCRKS----RRPKSSSGNNTKTSLTANSGNPGGGSPSIDLALVYANFLNPKP 120

[Close]

BLAST of CsGy6G017500 vs. Swiss-Prot
Match: sp|O24463|PBF_MAIZE (Dof zinc finger protein PBF OS=Zea mays OX=4577 GN=PBF PE=1 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 6.3e-25
Identity = 48/64 (75.00%), Postives = 55/64 (85.94%), Query Frame = 0


Query: 24  QRKWKPHLEAAPNCPRCASTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNVPVGGG 83
           +RK +P L  A  CPRC S NTKFCYYNNYS+SQPRYFCK+CRRYWT GG+LRNVP+GGG
Sbjct: 49  ERKPRPQLPEALKCPRCDSNNTKFCYYNNYSMSQPRYFCKACRRYWTHGGTLRNVPIGGG 108

Query: 84  CRKS 88
           CRK+
Sbjct: 109 CRKN 112

[Close]

BLAST of CsGy6G017500 vs. Swiss-Prot
Match: sp|Q84TE9|DOF53_ARATH (Dof zinc finger protein DOF5.3 OS=Arabidopsis thaliana OX=3702 GN=DOF5.3 PE=2 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.1e-24
Identity = 48/56 (85.71%), Postives = 52/56 (92.86%), Query Frame = 0


Query: 32  EAAPNCPRCASTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNVPVGGGCRKS 88
           E A  CPRC STNTKFCYYNNYSL+QPRYFCKSCRRYWTKGG+LRN+PVGGGCRK+
Sbjct: 52  ELALRCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNIPVGGGCRKN 107

[Close]

BLAST of CsGy6G017500 vs. Swiss-Prot
Match: sp|Q6Z345|DOF4_ORYSJ (Dof zinc finger protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=DOF4 PE=2 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.5e-23
Identity = 47/54 (87.04%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 34 APNCPRCASTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNVPVGGGCRKS 88
          A  CPRC STNTKFCYYNNY+LSQPR+FCKSCRRYWTKGG LRNVPVGGGCRK+
Sbjct: 44 AVKCPRCESTNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKT 97

[Close]

BLAST of CsGy6G017500 vs. TrEMBL
Match: tr|A0A0A0KGG2|A0A0A0KGG2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G338090 PE=4 SV=1)

HSP 1 Score: 419.9 bits (1078), Expect = 4.1e-114
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 0


Query: 1   MFSPPMSDHXXXXXXXXXFPSHLQRKWKPHLEAAPNCPRCASTNTKFCYYNNYSLSQPRY 60
           MFSPPMSDHXXXXXXXXXFPSHLQRKWKPHLEAAPNCPRCASTNTKFCYYNNYSLSQPRY
Sbjct: 1   MFSPPMSDHXXXXXXXXXFPSHLQRKWKPHLEAAPNCPRCASTNTKFCYYNNYSLSQPRY 60

Query: 61  FCKSCRRYWTKGGSLRNVPVGGGCRKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXI 120
           FCKSCRRYWTKGGSLRNVPVGGGCRKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXI
Sbjct: 61  FCKSCRRYWTKGGSLRNVPVGGGCRKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXI 120

Query: 121 DLAAVFARFLNSEPQTLTSSPESVDPLEISEIFLEGLSDMLLDDENQREEEKQGIPGSYE 180
           DLAAVFARFLNSEPQTLTSSPESVDPLEISEIFLEGLSDMLLDDENQREEEKQGIPGSYE
Sbjct: 121 DLAAVFARFLNSEPQTLTSSPESVDPLEISEIFLEGLSDMLLDDENQREEEKQGIPGSYE 180

Query: 181 NVSFGLETELGIDEEVWASPEMQEQVQELDSFSCNYYANDLRVSDQFCQVGDNWSSFDFA 240
           NVSFGLETELGIDEEVWASPEMQEQVQELDSFSCNYYANDLRVSDQFCQVGDNWSSFDFA
Sbjct: 181 NVSFGLETELGIDEEVWASPEMQEQVQELDSFSCNYYANDLRVSDQFCQVGDNWSSFDFA 240

Query: 241 AVNNVEYF 249
           AVNNVEYF
Sbjct: 241 AVNNVEYF 248

[Close]

BLAST of CsGy6G017500 vs. TrEMBL
Match: tr|A0A067L3I5|A0A067L3I5_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_25217 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 2.0e-36
Identity = 96/208 (46.15%), Postives = 117/208 (56.25%), Query Frame = 0


Query: 20  PSHLQRKWKPHLEAAPNCPRCASTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNVP 79
           P  ++RKWK H+E APNCPRCASTNTKFCYYNNYSLSQPRYFCK+CRRYWTKGGSLRNVP
Sbjct: 16  PLPMERKWKSHVELAPNCPRCASTNTKFCYYNNYSLSQPRYFCKACRRYWTKGGSLRNVP 75

Query: 80  VGGGCRK-----------SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDLAAVFAR 139
           VGGGCRK           +                                IDLA VFA+
Sbjct: 76  VGGGCRKTRRAKAVRASQTDRVVSLNNYSRDLTSSSVDSFTQENQTSNGSDIDLAVVFAK 135

Query: 140 FLNSE--------PQTLTSSPESV-DPLEISEIFLEGLSDMLLDDENQREEEK--QGIPG 199
           FLN +          +LT   E V D ++ S+ FLEGL  +LL ++ Q+E +   Q    
Sbjct: 136 FLNQDSSVNPNEFSNSLTVEKEKVSDLIQESDDFLEGLPPVLLVEDGQQENQDSIQEFIE 195

Query: 200 SYENVSFGLETELG----IDEEVWASPE 202
           S E  +FGL+T LG    + E +W+  E
Sbjct: 196 SPEMDAFGLQTFLGDQEMVHEALWSDQE 223

[Close]

BLAST of CsGy6G017500 vs. TrEMBL
Match: tr|A0A2K2BEV6|A0A2K2BEV6_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G070700v3 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 9.4e-34
Identity = 109/275 (39.64%), Postives = 144/275 (52.36%), Query Frame = 0


Query: 20  PSHLQRKWKPHLEAAPNCPRCASTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNVP 79
           P  ++RKWK ++E APNCPRCAS NTKFCYYNNYSLSQPRYFCK CRRYWTKGGSLRNVP
Sbjct: 16  PFPMERKWKSNIEVAPNCPRCASPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVP 75

Query: 80  VGGGCRK------SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDLAAVFARFLNSE 139
            GGGCRK      +                                IDLAAVF++FLN +
Sbjct: 76  AGGGCRKYRRNERAAVSLDYSRANETLACSSNKDSVAQQDGANGSDIDLAAVFSKFLNQD 135

Query: 140 ----PQTL----------------TSSPES--------VDPLEISEI-----FLEGLSDM 199
               P+ +                +S+P S        ++ L+ S++      LEG S +
Sbjct: 136 LSYGPEFIGEELRDEGSELVNISNSSTPISDSYQNDPMMESLKRSDLTQESNLLEGRSQV 195

Query: 200 LLDDENQREEEK--QGIPGSYENVSFGLETELGIDEEV----WAS-------PEMQE--Q 241
           L+ ++ Q EE++  Q +  S +  +FGL+  L IDE V    W+        P  Q   Q
Sbjct: 196 LVGEKQQFEEDQRFQELIESQDMNAFGLQNLL-IDEIVQDALWSDDATLPHVPNWQPMVQ 255

[Close]

BLAST of CsGy6G017500 vs. TrEMBL
Match: tr|A0A2C9WEY0|A0A2C9WEY0_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_02G176400 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 2.1e-33
Identity = 99/272 (36.40%), Postives = 134/272 (49.26%), Query Frame = 0


Query: 20  PSHLQRKWKPHLEAAPNCPRCASTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNVP 79
           P  ++RKWK  +E AP+CPRCAS+NTKFCYYNNYSLSQPRYFCK CRRYWTKGGSLRNVP
Sbjct: 17  PLPMERKWKSQVELAPHCPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVP 76

Query: 80  VGGGCRKS----------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDLA 139
           VGGGCRK+                                                IDLA
Sbjct: 77  VGGGCRKTRRAKSVRVSQNDREGFGKNDFSGFDGRINGSTGDSMAQGTVANGSSSEIDLA 136

Query: 140 AVFARFLNS--------EPQTLTSSPESVDP--------------LEISEIFLEGLSDML 199
            VFA+FLN         + Q  +++P S  P              ++ S++ LEGL  + 
Sbjct: 137 VVFAKFLNQDSSFHPEFQAQETSTAPNSSTPDSAVIEGDDKITDLIQESDLLLEGLPPVT 196

Query: 200 LDDENQREEEK--QGIPGSYENVSFGLETELG---IDEEVWASP--------EMQEQVQE 241
           + D  Q+E+E+  Q +  S +  +FGL+T LG   + + +W+          E  +  QE
Sbjct: 197 VRDHEQQEDEERIQELLESQDMDAFGLQTLLGDEMVQDALWSETATLPNFTWETVQPQQE 256

[Close]

BLAST of CsGy6G017500 vs. TrEMBL
Match: tr|A0A2P6PSB3|A0A2P6PSB3_ROSCH (Putative transcription factor C2C2-Dof family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0276721 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 3.6e-33
Identity = 105/272 (38.60%), Postives = 131/272 (48.16%), Query Frame = 0


Query: 27  WKPHLEAAPNCPRCASTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNVPVGGGCRK 86
           WKPH+E APNCPRCAS+NTKFCYYNNYSLSQPRYFCK CRRYWTKGGSLRNVPVGGGCRK
Sbjct: 26  WKPHVEIAPNCPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRK 85

Query: 87  S-------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDLAAVFARFLN-- 146
           +                                             IDLAAVFA+FLN  
Sbjct: 86  NRRGRSVRLSQADRVSLSYYRHNSSSGSGGDLSEQQSMEGGANGSDIDLAAVFAKFLNQD 145

Query: 147 -------------------------SEPQTLTSSPESVDPLEISEIFLEGLSDMLLDDEN 206
                                    S+   ++S+PE  D LE  E+ LEGL  +L D ++
Sbjct: 146 SSNEHDPNLVGSESIPDDVHEANALSDHSQISSNPEE-DLLESVEL-LEGL--VLPDQDH 205

Query: 207 QREEEKQGIPGSYENV--------SFGLETELGIDEEVW-------ASPEMQEQVQELDS 243
           Q+  E+  I     N          FGL+  LG ++  W        S       QELD+
Sbjct: 206 QQLHEEDNIQNIMGNQHHHDLSIHEFGLQGLLGDEDVFWTDTTASLTSSTTSFTWQELDN 265

The following BLAST results are available for this feature:

BLAST of CsGy6G017500 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004148826.2	6.2e-114	100.00	PREDICTED: dof zinc finger protein DOF1.2 [Cucumis sativus] >KGN47477.1 hypothet...	[more]
XP_022993920.1	3.3e-83	70.59	dof zinc finger protein DOF1.2-like [Cucurbita maxima]	[more]
XP_022939534.1	4.8e-82	71.65	dof zinc finger protein DOF1.2-like [Cucurbita moschata]	[more]
XP_023522776.1	8.2e-82	68.50	dof zinc finger protein DOF1.2-like [Cucurbita pepo subsp. pepo] >XP_023551553.1...	[more]
XP_022141618.1	2.5e-54	53.73	dof zinc finger protein DOF1.2-like [Momordica charantia]	[more]

BLAST of CsGy6G017500 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G21340.1	8.8e-30	36.71	Dof-type zinc finger DNA-binding family protein	[more]
AT3G52440.1	1.7e-28	54.46	Dof-type zinc finger DNA-binding family protein	[more]
AT5G60200.1	5.9e-26	85.71	TARGET OF MONOPTEROS 6	[more]
AT3G55370.3	1.9e-24	79.66	OBF-binding protein 3	[more]
AT4G24060.1	4.3e-24	77.59	Dof-type zinc finger DNA-binding family protein	[more]

BLAST of CsGy6G017500 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P68349\|DOF12_ARATH	1.6e-28	36.71	Dof zinc finger protein DOF1.2 OS=Arabidopsis thaliana OX=3702 GN=DOF1.2 PE=2 SV...	[more]
sp\|Q9SVC5\|DOF35_ARATH	3.0e-27	54.46	Dof zinc finger protein DOF3.5 OS=Arabidopsis thaliana OX=3702 GN=DOF3.5 PE=3 SV...	[more]
sp\|O24463\|PBF_MAIZE	6.3e-25	75.00	Dof zinc finger protein PBF OS=Zea mays OX=4577 GN=PBF PE=1 SV=1	[more]
sp\|Q84TE9\|DOF53_ARATH	1.1e-24	85.71	Dof zinc finger protein DOF5.3 OS=Arabidopsis thaliana OX=3702 GN=DOF5.3 PE=2 SV...	[more]
sp\|Q6Z345\|DOF4_ORYSJ	1.5e-23	87.04	Dof zinc finger protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=DOF4 PE=2 ...	[more]

BLAST of CsGy6G017500 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KGG2\|A0A0A0KGG2_CUCSA	4.1e-114	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G338090 PE=4 SV=1	[more]
tr\|A0A067L3I5\|A0A067L3I5_JATCU	2.0e-36	46.15	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_25217 PE=4 SV=1	[more]
tr\|A0A2K2BEV6\|A0A2K2BEV6_POPTR	9.4e-34	39.64	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G070700v3 PE=...	[more]
tr\|A0A2C9WEY0\|A0A2C9WEY0_MANES	2.1e-33	36.40	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_02G176400 PE=4 SV=...	[more]
tr\|A0A2P6PSB3\|A0A2P6PSB3_ROSCH	3.6e-33	38.60	Putative transcription factor C2C2-Dof family OS=Rosa chinensis OX=74649 GN=Rchi...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR003851	Znf_Dof

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G017500.1	CsGy6G017500.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003851	Zinc finger, Dof-type	PFAM	PF02701	zf-Dof	coord: 34..89 e-value: 1.3E-32 score: 111.6
IPR003851	Zinc finger, Dof-type	PROSITE	PS01361	ZF_DOF_1	coord: 37..73
IPR003851	Zinc finger, Dof-type	PRODOM	PD007478		coord: 23..84 e-value: 3.0E-25 score: 286.0
IPR003851	Zinc finger, Dof-type	PROSITE	PS50884	ZF_DOF_2	coord: 35..89 score: 28.742
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..115
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..115
None	No IPR available	PANTHER	PTHR31992:SF73	DOF ZINC FINGER PROTEIN DOF3.5	coord: 24..141
None	No IPR available	PANTHER	PTHR31992	FAMILY NOT NAMED	coord: 24..141

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy6G017500	Cla013851	Watermelon (97103) v1	cgybwmB439
CsGy6G017500	Csa6G338090	Cucumber (Chinese Long) v2	cgybcuB281
CsGy6G017500	MELO3C008400	Melon (DHL92) v3.5.1	cgybmeB410
CsGy6G017500	ClCG08G006520	Watermelon (Charleston Gray)	cgybwcgB466
CsGy6G017500	CSPI06G18020	Wild cucumber (PI 183967)	cgybcpiB287
CsGy6G017500	CmaCh15G006190	Cucurbita maxima (Rimu)	cgybcmaB743
CsGy6G017500	CmaCh04G024290	Cucurbita maxima (Rimu)	cgybcmaB839
CsGy6G017500	CmoCh15G006230	Cucurbita moschata (Rifu)	cgybcmoB724
CsGy6G017500	CmoCh04G025460	Cucurbita moschata (Rifu)	cgybcmoB819
CsGy6G017500	Lsi08G005290	Bottle gourd (USVL1VR-Ls)	cgyblsiB447
CsGy6G017500	Cp4.1LG01g20940	Cucurbita pepo (Zucchini)	cgybcpeB801
CsGy6G017500	Cp4.1LG13g04090	Cucurbita pepo (Zucchini)	cgybcpeB743
CsGy6G017500	MELO3C008400.2	Melon (DHL92) v3.6.1	cgybmedB408
CsGy6G017500	CsaV3_6G030900	Cucumber (Chinese Long) v3	cgybcucB298
CsGy6G017500	Cla97C08G149340	Watermelon (97103) v2	cgybwmbB474
CsGy6G017500	Bhi04G001409	Wax gourd	cgybwgoB545
CsGy6G017500	Carg15778	Silver-seed gourd	carcgybB0067
CsGy6G017500	Carg01588	Silver-seed gourd	carcgybB0826

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy6G017500	Cucurbita moschata (Rifu)	cgybcmoB690