CmoCh04G025460 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G025460
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Dof zinc finger protein
Location	Cmo_Chr04 : 18678551 .. 18679201 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCGATCACCACCAGATCTCCCATCTTCCTCCGCCGACGCCGCCGCCGTTCGCCGCCCATCTCCAACGGAAATGGAAGCCCCATCTCGAAAAAGCCCCCAATTGCCCCCGCTGCGCCTCCGCCAACACCAAATTCTGTTATTACAACAACTACAGCCTCTCCCAGCCTCGTTACTTCTGTAAATCCTGCCGCCGTTACTGGACCAAAGGCGGCTCCCTCCGCAACGTCCCCGTCGGCGGCGGCTGCCGCAAGACCCGCCGTTCCAAATCCTCAACCTCCTCCACTATCTTACCCAACGTAATTTCAACCCAAATTACCGAACCCTCTTCCCGATCCGATATTGATCTTGCTGCCGTTTTCGCTAAATTTTTAAACACCCCACCGAGCACAAAGTCCCATGTATCGACCAGCTCCCCGGAATCGACTGACCCATCAAACAATCTAACAGCGAAGAATCCCGAGATCTTCTTCGAAGAGCTATCCGATTTATTCAATCAACCCGAACATCGGATTACAAACGACTATGAAAATTTCCCATTTGAGTTACAACCCGAACTAACCATTGATGAACTATGGCCATCGCAACCGATCGAACAACTTCAAGAATGGGAATCTTTCTCGTGCAATTACAACGCGGAATTTTTGTGA

mRNA sequence

ATGTCCGATCACCACCAGATCTCCCATCTTCCTCCGCCGACGCCGCCGCCGTTCGCCGCCCATCTCCAACGGAAATGGAAGCCCCATCTCGAAAAAGCCCCCAATTGCCCCCGCTGCGCCTCCGCCAACACCAAATTCTGTTATTACAACAACTACAGCCTCTCCCAGCCTCGTTACTTCTGTAAATCCTGCCGCCGTTACTGGACCAAAGGCGGCTCCCTCCGCAACGTCCCCGTCGGCGGCGGCTGCCGCAAGACCCGCCGTTCCAAATCCTCAACCTCCTCCACTATCTTACCCAACGTAATTTCAACCCAAATTACCGAACCCTCTTCCCGATCCGATATTGATCTTGCTGCCGTTTTCGCTAAATTTTTAAACACCCCACCGAGCACAAAGTCCCATGTATCGACCAGCTCCCCGGAATCGACTGACCCATCAAACAATCTAACAGCGAAGAATCCCGAGATCTTCTTCGAAGAGCTATCCGATTTATTCAATCAACCCGAACATCGGATTACAAACGACTATGAAAATTTCCCATTTGAGTTACAACCCGAACTAACCATTGATGAACTATGGCCATCGCAACCGATCGAACAACTTCAAGAATGGGAATCTTTCTCGTGCAATTACAACGCGGAATTTTTGTGA

Coding sequence (CDS)

ATGTCCGATCACCACCAGATCTCCCATCTTCCTCCGCCGACGCCGCCGCCGTTCGCCGCCCATCTCCAACGGAAATGGAAGCCCCATCTCGAAAAAGCCCCCAATTGCCCCCGCTGCGCCTCCGCCAACACCAAATTCTGTTATTACAACAACTACAGCCTCTCCCAGCCTCGTTACTTCTGTAAATCCTGCCGCCGTTACTGGACCAAAGGCGGCTCCCTCCGCAACGTCCCCGTCGGCGGCGGCTGCCGCAAGACCCGCCGTTCCAAATCCTCAACCTCCTCCACTATCTTACCCAACGTAATTTCAACCCAAATTACCGAACCCTCTTCCCGATCCGATATTGATCTTGCTGCCGTTTTCGCTAAATTTTTAAACACCCCACCGAGCACAAAGTCCCATGTATCGACCAGCTCCCCGGAATCGACTGACCCATCAAACAATCTAACAGCGAAGAATCCCGAGATCTTCTTCGAAGAGCTATCCGATTTATTCAATCAACCCGAACATCGGATTACAAACGACTATGAAAATTTCCCATTTGAGTTACAACCCGAACTAACCATTGATGAACTATGGCCATCGCAACCGATCGAACAACTTCAAGAATGGGAATCTTTCTCGTGCAATTACAACGCGGAATTTTTGTGA

Homology

[Close]

BLAST of CmoCh04G025460 vs. Swiss-Prot
Match: DOF35_ARATH (Dof zinc finger protein DOF3.5 OS=Arabidopsis thaliana GN=DOF3.5 PE=3 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.7e-31
Identity = 65/108 (60.19%), Postives = 77/108 (71.30%), Query Frame = 1


Query: 26  WKPHL----EKAPNCPRCASANTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNVPVGG 85
           W+P+     E  P+CPRC S+NTKFCYYNNYSL+QPRYFCK CRRYWTKGGSLRNVPVGG
Sbjct: 13  WRPNANANAEITPSCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGG 72

Query: 86  GCRKTRRSKSSTSSTILPNVISTQITEPSSRSDIDLAAVFAKFLNTPP 130
           GCRK+RR KSS+ +    ++ +           IDLA V+A FLN  P
Sbjct: 73  GCRKSRRPKSSSGNNTKTSLTANSGNPGGGSPSIDLALVYANFLNPKP 120

[Close]

BLAST of CmoCh04G025460 vs. Swiss-Prot
Match: DOF12_ARATH (Dof zinc finger protein DOF1.2 OS=Arabidopsis thaliana GN=DOF1.2 PE=2 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 6.1e-29
Identity = 89/214 (41.59%), Postives = 122/214 (57.01%), Query Frame = 1


Query: 22  LQRKWKPHLEK----APNCPRCASANTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNV 81
           +  KWK   E+    AP CPRCAS+NTKFCYYNNYSLSQPRYFCK CRRYWTKGGSLRN+
Sbjct: 22  IPEKWKLSYEQEAITAPACPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNI 81

Query: 82  PVGGGCRKTRRSKSSTSSTI-----LPNVISTQ---ITEPSSRSDIDLAAVFAKFL-NTP 141
           PVGGGCRK  RS+ ++          P+ +  Q          SDIDLAAVFA+++ +  
Sbjct: 82  PVGGGCRKRSRSRQNSHKRFGRNENRPDGLINQDDGFQSSPPGSDIDLAAVFAQYVTDRS 141

Query: 142 PSTKSHVSTSSPES--TDPSNNLTAKNPEIFFEELSDL-----FNQPEHRITNDYENFPF 201
           PS+  + + S  +S  T  ++ L + + +I  E   DL     FN    +   D E F  
Sbjct: 142 PSSTDNTTGSDQDSPITTTTHALESLSWDICQETDVDLGFYGEFNNLTQKTKEDQEVFGQ 201

Query: 202 ELQPELTIDELWPSQP-IEQLQEWESFSCNYNAE 215
            LQ +   +E++  Q  ++  +  E   C+++ E
Sbjct: 202 FLQEDR--EEIFEFQGLLDDKEIQEILECSFSEE 233

[Close]

BLAST of CmoCh04G025460 vs. Swiss-Prot
Match: DOF18_ARATH (Dof zinc finger protein DOF1.8 OS=Arabidopsis thaliana GN=DOF1.8 PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.2e-27
Identity = 56/82 (68.29%), Postives = 67/82 (81.71%), Query Frame = 1


Query: 15  PPPFAAHLQRKWKPHLEKAPNCPRCASANTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSL 74
           PP  A  ++RK +P  ++A NCPRC S NTKFCYYNNYSL+QPRYFCK CRRYWT GGSL
Sbjct: 30  PPSPATPVERKARPEKDQALNCPRCNSLNTKFCYYNNYSLTQPRYFCKDCRRYWTAGGSL 89

Query: 75  RNVPVGGGCRKTRRSKSSTSST 97
           RN+PVGGG RK +RS S++SS+
Sbjct: 90  RNIPVGGGVRKNKRSSSNSSSS 111

[Close]

BLAST of CmoCh04G025460 vs. Swiss-Prot
Match: DOF46_ARATH (Dof zinc finger protein DOF4.6 OS=Arabidopsis thaliana GN=DOF4.6 PE=2 SV=2)

HSP 1 Score: 120.6 bits (301), Expect = 2.2e-26
Identity = 72/156 (46.15%), Postives = 88/156 (56.41%), Query Frame = 1


Query: 10  LPPPTPPPFAAHLQRKWKPHLEKAPNCPRCASANTKFCYYNNYSLSQPRYFCKSCRRYWT 69
           L P  PP      +RK +P  ++A NCPRC S NTKFCYYNNYSL+QPRYFCK CRRYWT
Sbjct: 31  LQPQQPPSVGG--ERKARPEKDQAVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWT 90

Query: 70  KGGSLRNVPVGGGCRKTRRSKSSTSSTILPNVISTQITEPSSRSDIDLAAVFAKFLNTPP 129
           +GGSLRN+PVGGG RK +RS SS+S               ++ SD           +T P
Sbjct: 91  EGGSLRNIPVGGGSRKNKRSHSSSSDI------------SNNHSD-----------STQP 150

Query: 130 STKSHVSTSSPESTDPS-NNLTAKNPEIFFEELSDL 165
           +TK H+S         S   LT +NP+       DL
Sbjct: 151 ATKKHLSDHHHHLMSMSQQGLTGQNPKFLETTQQDL 161

[Close]

BLAST of CmoCh04G025460 vs. Swiss-Prot
Match: DOF21_ARATH (Dof zinc finger protein DOF2.1 OS=Arabidopsis thaliana GN=DOF2.1 PE=2 SV=2)

HSP 1 Score: 120.6 bits (301), Expect = 2.2e-26
Identity = 53/64 (82.81%), Postives = 57/64 (89.06%), Query Frame = 1


Query: 32  KAPNCPRCASANTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNVPVGGGCRKTRRSKS 91
           +A NCPRC S NTKFCYYNNYSLSQPRYFCKSCRRYWTKGG+LRNVPVGGGCR+ +RS S
Sbjct: 46  EAQNCPRCESPNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRRNKRSSS 105

Query: 92  STSS 96
           S  S
Sbjct: 106 SAFS 109

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BLAST of CmoCh04G025460 vs. TrEMBL
Match: A0A0A0KGG2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G338090 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 1.3e-62
Identity = 144/229 (62.88%), Postives = 159/229 (69.43%), Query Frame = 1


Query: 1   MSDHHQISHLPPPTPPPFAAHLQRKWKPHLEKAPNCPRCASANTKFCYYNNYSLSQPRYF 60
           MSDH Q+    PP PPPF +HLQRKWKPHLE APNCPRCAS NTKFCYYNNYSLSQPRYF
Sbjct: 6   MSDHQQL----PPPPPPFPSHLQRKWKPHLEAAPNCPRCASTNTKFCYYNNYSLSQPRYF 65

Query: 61  CKSCRRYWTKGGSLRNVPVGGGCRKTRRSKSSTSSTI----LPNVISTQITEPSSRSDID 120
           CKSCRRYWTKGGSLRNVPVGGGCRK+RR+KSS SS I     P++ S      SS SDID
Sbjct: 66  CKSCRRYWTKGGSLRNVPVGGGCRKSRRAKSSKSSAISRPSKPDLSSQTTDSSSSASDID 125

Query: 121 LAAVFAKFLNTPPSTKSHVSTSSPESTDPSNNLTAKNPEIFFEELSDLF----NQPEHR- 180
           LAAVFA+FLN+ P T     TSSPES DP      +  EIF E LSD+     NQ E   
Sbjct: 126 LAAVFARFLNSEPQT----LTSSPESVDP-----LEISEIFLEGLSDMLLDDENQREEEK 185

Query: 181 --ITNDYENFPFELQPELTID-ELWPSQPI-EQLQEWESFSCNYNAEFL 217
             I   YEN  F L+ EL ID E+W S  + EQ+QE +SFSCNY A  L
Sbjct: 186 QGIPGSYENVSFGLETELGIDEEVWASPEMQEQVQELDSFSCNYYANDL 221

[Close]

BLAST of CmoCh04G025460 vs. TrEMBL
Match: A0A067L3I5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25217 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.2e-36
Identity = 96/180 (53.33%), Postives = 111/180 (61.67%), Query Frame = 1


Query: 5   HQISHLPPPTPPPFAAHLQRKWKPHLEKAPNCPRCASANTKFCYYNNYSLSQPRYFCKSC 64
           HQ S  P P        ++RKWK H+E APNCPRCAS NTKFCYYNNYSLSQPRYFCK+C
Sbjct: 10  HQYSSRPLP--------MERKWKSHVELAPNCPRCASTNTKFCYYNNYSLSQPRYFCKAC 69

Query: 65  RRYWTKGGSLRNVPVGGGCRKTRRSK----SSTSSTILPNVIS-----------TQITEP 124
           RRYWTKGGSLRNVPVGGGCRKTRR+K    S T   +  N  S           TQ  + 
Sbjct: 70  RRYWTKGGSLRNVPVGGGCRKTRRAKAVRASQTDRVVSLNNYSRDLTSSSVDSFTQENQT 129

Query: 125 SSRSDIDLAAVFAKFLNTPPSTKSHVSTSSPESTDPSNNLTAKNPEIFFEELSDLFNQPE 170
           S+ SDIDLA VFAKFLN           SS    + SN+LT +      E++SDL  + +
Sbjct: 130 SNGSDIDLAVVFAKFLN---------QDSSVNPNEFSNSLTVEK-----EKVSDLIQESD 167

[Close]

BLAST of CmoCh04G025460 vs. TrEMBL
Match: A0A068VC27_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00012009001 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.1e-35
Identity = 100/216 (46.30%), Postives = 126/216 (58.33%), Query Frame = 1


Query: 13  PTPPPFAAHLQRKWKPHLEKAPNCPRCASANTKFCYYNNYSLSQPRYFCKSCRRYWTKGG 72
           P+ PP    + R+WK   E APNCPRCAS+NTKFCYYNNYS+SQPRYFCK CRRYWTKGG
Sbjct: 5   PSRPPV---MGRRWKSSTESAPNCPRCASSNTKFCYYNNYSMSQPRYFCKGCRRYWTKGG 64

Query: 73  SLRNVPVGGGCRKTRRSKSSTSSTIL--------PNVISTQITEPSSRSDIDLAAVFAKF 132
           SLRNVPVGGGCRKTRRSKS+  +  L        P   S +    S+ +DIDLAAVFAKF
Sbjct: 65  SLRNVPVGGGCRKTRRSKSARQADRLGLIYQMPSPGRASDESNNSSNGADIDLAAVFAKF 124

Query: 133 LNTPPST----KSHVSTSSPESTDPSNNLTAKNPEIFFE---ELSDLFNQ---PEHRITN 192
           LN   S+    K HVST    S    +  +   P  + +   ++ D+  Q   P   I  
Sbjct: 125 LNQDDSSNDLDKIHVSTDQESSLSGLSRTSLDLPLGYLDRENQIEDMIFQCQKPTDFIDG 184

Query: 193 DYENFPFELQPELTIDELWPSQPIEQLQEWESFSCN 211
           D  +   E  P L++D       ++ ++E    +CN
Sbjct: 185 DQMH---EGHPSLSMD-------VDNIEELLDQNCN 207

[Close]

BLAST of CmoCh04G025460 vs. TrEMBL
Match: K7KLZ8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G239500 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.1e-35
Identity = 97/191 (50.79%), Postives = 116/191 (60.73%), Query Frame = 1


Query: 17  PFAAHLQRKWKPHLEKAPNCPRCASANTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRN 76
           P     + +WKP +E APNCPRCAS NTKFCYYNNYSLSQPRYFCK CRRYWTKGGSLRN
Sbjct: 27  PMEEQQRSRWKPSVEVAPNCPRCASTNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRN 86

Query: 77  VPVGGGCRKTRRSKSSTSSTIL----PNVISTQITEPSS-----------RSDIDLAAVF 136
           VPVGGGCRK RR KSS+SS +         S + TE SS             DID+A VF
Sbjct: 87  VPVGGGCRKNRRGKSSSSSRLQHQSHQRAFSCENTESSSVGDDAQQNNNVSRDIDMALVF 146

Query: 137 AKFLNTPPSTKSHVSTSSPESTDPSNNLTAKNPEIFFEELSDLFNQPEHRITNDYENFPF 193
           AKFLN  P+T    +  SP S   +N LT ++ EI     +D   Q +++ ++D      
Sbjct: 147 AKFLNPKPTT-GEDNNGSPSS---NNYLTPESVEI----ENDAVVQSQNKASSDPVIVES 206

[Close]

BLAST of CmoCh04G025460 vs. TrEMBL
Match: A0A0D2N9D0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G081000 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 4.0e-35
Identity = 100/213 (46.95%), Postives = 119/213 (55.87%), Query Frame = 1


Query: 22  LQRKWKPHLEKAPNCPRCASANTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNVPVGG 81
           ++RKWK ++E APNCPRCASANTKFCYYNNYSLSQPRYFCK CRRYWTKGGSLRNVPVGG
Sbjct: 20  IERKWKSNVETAPNCPRCASANTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGG 79

Query: 82  GCRKTRRSKS---------STSSTILPNVISTQITEPSSRSDIDLAAVFAKFLNTPPSTK 141
           GCRK+RR KS           S T   N  S+   +  ++ DIDLA VFAKFLN   S  
Sbjct: 80  GCRKSRRGKSRRERVEKRDQISMTDSKNSTSSSDGDSGNQPDIDLALVFAKFLNHNTSFD 139

Query: 142 SHVSTSSPESTDPSNNLTAKNPEIFFEELSDLFNQPEHRITNDYENFPFELQPELTIDE- 201
                       P+    ++ P +    +   +   E   T+  E   F LQ  LT DE 
Sbjct: 140 QPEVDEIATQESPNEENNSQKPVV--GSIPGSYILQEMPETSQME--AFGLQNLLTGDEM 199

Query: 202 -----LWPS------------QPIEQLQEWESF 208
                LW              QP+ QLQ++ESF
Sbjct: 200 VLHEDLWSDHDVATTTPDMEWQPLVQLQQYESF 228

[Close]

BLAST of CmoCh04G025460 vs. TAIR10
Match: AT3G52440.1 (AT3G52440.1 Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 137.5 bits (345), Expect = 9.7e-33
Identity = 65/108 (60.19%), Postives = 77/108 (71.30%), Query Frame = 1


Query: 26  WKPHL----EKAPNCPRCASANTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNVPVGG 85
           W+P+     E  P+CPRC S+NTKFCYYNNYSL+QPRYFCK CRRYWTKGGSLRNVPVGG
Sbjct: 13  WRPNANANAEITPSCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGG 72

Query: 86  GCRKTRRSKSSTSSTILPNVISTQITEPSSRSDIDLAAVFAKFLNTPP 130
           GCRK+RR KSS+ +    ++ +           IDLA V+A FLN  P
Sbjct: 73  GCRKSRRPKSSSGNNTKTSLTANSGNPGGGSPSIDLALVYANFLNPKP 120

[Close]

BLAST of CmoCh04G025460 vs. TAIR10
Match: AT1G21340.1 (AT1G21340.1 Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 129.0 bits (323), Expect = 3.5e-30
Identity = 89/214 (41.59%), Postives = 122/214 (57.01%), Query Frame = 1


Query: 22  LQRKWKPHLEK----APNCPRCASANTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNV 81
           +  KWK   E+    AP CPRCAS+NTKFCYYNNYSLSQPRYFCK CRRYWTKGGSLRN+
Sbjct: 22  IPEKWKLSYEQEAITAPACPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNI 81

Query: 82  PVGGGCRKTRRSKSSTSSTI-----LPNVISTQ---ITEPSSRSDIDLAAVFAKFL-NTP 141
           PVGGGCRK  RS+ ++          P+ +  Q          SDIDLAAVFA+++ +  
Sbjct: 82  PVGGGCRKRSRSRQNSHKRFGRNENRPDGLINQDDGFQSSPPGSDIDLAAVFAQYVTDRS 141

Query: 142 PSTKSHVSTSSPES--TDPSNNLTAKNPEIFFEELSDL-----FNQPEHRITNDYENFPF 201
           PS+  + + S  +S  T  ++ L + + +I  E   DL     FN    +   D E F  
Sbjct: 142 PSSTDNTTGSDQDSPITTTTHALESLSWDICQETDVDLGFYGEFNNLTQKTKEDQEVFGQ 201

Query: 202 ELQPELTIDELWPSQP-IEQLQEWESFSCNYNAE 215
            LQ +   +E++  Q  ++  +  E   C+++ E
Sbjct: 202 FLQEDR--EEIFEFQGLLDDKEIQEILECSFSEE 233

[Close]

BLAST of CmoCh04G025460 vs. TAIR10
Match: AT1G64620.1 (AT1G64620.1 Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 124.8 bits (312), Expect = 6.5e-29
Identity = 56/82 (68.29%), Postives = 67/82 (81.71%), Query Frame = 1


Query: 15  PPPFAAHLQRKWKPHLEKAPNCPRCASANTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSL 74
           PP  A  ++RK +P  ++A NCPRC S NTKFCYYNNYSL+QPRYFCK CRRYWT GGSL
Sbjct: 30  PPSPATPVERKARPEKDQALNCPRCNSLNTKFCYYNNYSLTQPRYFCKDCRRYWTAGGSL 89

Query: 75  RNVPVGGGCRKTRRSKSSTSST 97
           RN+PVGGG RK +RS S++SS+
Sbjct: 90  RNIPVGGGVRKNKRSSSNSSSS 111

[Close]

BLAST of CmoCh04G025460 vs. TAIR10
Match: AT4G24060.1 (AT4G24060.1 Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 120.6 bits (301), Expect = 1.2e-27
Identity = 72/156 (46.15%), Postives = 88/156 (56.41%), Query Frame = 1


Query: 10  LPPPTPPPFAAHLQRKWKPHLEKAPNCPRCASANTKFCYYNNYSLSQPRYFCKSCRRYWT 69
           L P  PP      +RK +P  ++A NCPRC S NTKFCYYNNYSL+QPRYFCK CRRYWT
Sbjct: 31  LQPQQPPSVGG--ERKARPEKDQAVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWT 90

Query: 70  KGGSLRNVPVGGGCRKTRRSKSSTSSTILPNVISTQITEPSSRSDIDLAAVFAKFLNTPP 129
           +GGSLRN+PVGGG RK +RS SS+S               ++ SD           +T P
Sbjct: 91  EGGSLRNIPVGGGSRKNKRSHSSSSDI------------SNNHSD-----------STQP 150

Query: 130 STKSHVSTSSPESTDPS-NNLTAKNPEIFFEELSDL 165
           +TK H+S         S   LT +NP+       DL
Sbjct: 151 ATKKHLSDHHHHLMSMSQQGLTGQNPKFLETTQQDL 161

[Close]

BLAST of CmoCh04G025460 vs. TAIR10
Match: AT2G28510.1 (AT2G28510.1 Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 120.6 bits (301), Expect = 1.2e-27
Identity = 53/64 (82.81%), Postives = 57/64 (89.06%), Query Frame = 1


Query: 32  KAPNCPRCASANTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNVPVGGGCRKTRRSKS 91
           +A NCPRC S NTKFCYYNNYSLSQPRYFCKSCRRYWTKGG+LRNVPVGGGCR+ +RS S
Sbjct: 46  EAQNCPRCESPNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRRNKRSSS 105

Query: 92  STSS 96
           S  S
Sbjct: 106 SAFS 109

[Close]

BLAST of CmoCh04G025460 vs. NCBI nr
Match: gi|659081848|ref|XP_008441540.1| (PREDICTED: dof zinc finger protein DOF1.2 [Cucumis melo])

HSP 1 Score: 250.4 bits (638), Expect = 2.9e-63
Identity = 142/229 (62.01%), Postives = 162/229 (70.74%), Query Frame = 1


Query: 1   MSDHHQISHLPPPTPPPFAAHLQRKWKPHLEKAPNCPRCASANTKFCYYNNYSLSQPRYF 60
           MSDHHQ+    PP PPPF +HL+RKWKPHLE APNCPRCAS NTKFCYYNNYSLSQPRYF
Sbjct: 6   MSDHHQL----PPPPPPFPSHLERKWKPHLETAPNCPRCASTNTKFCYYNNYSLSQPRYF 65

Query: 61  CKSCRRYWTKGGSLRNVPVGGGCRKTRRSKSSTSSTI----LPNVISTQITEPSSRSDID 120
           CKSCRRYWTKGGSLRNVPVGGGCRK+RR+KSS SS I     P++ S      SS SDID
Sbjct: 66  CKSCRRYWTKGGSLRNVPVGGGCRKSRRAKSSKSSPISRPSKPDLSSQTTDSSSSASDID 125

Query: 121 LAAVFAKFLNTPPSTKSHVSTSSPESTDPSNNLTAKNPEIFFEELSDLFNQPEHR----- 180
           LAAVFA+FLN+ P       TSSPES DP      +  EIF E LSDL  + E++     
Sbjct: 126 LAAVFARFLNSEP----QALTSSPESVDP-----LEISEIFLEGLSDLLLEDENQREEGK 185

Query: 181 --ITNDYENFPFELQPELTID-ELWPSQPI-EQLQEWESFSCNYNAEFL 217
             I  ++EN  F L+ EL ID E+W SQ + EQ+QE +SFSCNY A  L
Sbjct: 186 QGIPGNHENVSFGLETELGIDEEVWASQEMQEQVQELDSFSCNYYANDL 221

[Close]

BLAST of CmoCh04G025460 vs. NCBI nr
Match: gi|778714878|ref|XP_004148826.2| (PREDICTED: dof zinc finger protein DOF1.2 [Cucumis sativus])

HSP 1 Score: 247.7 bits (631), Expect = 1.9e-62
Identity = 144/229 (62.88%), Postives = 159/229 (69.43%), Query Frame = 1


Query: 1   MSDHHQISHLPPPTPPPFAAHLQRKWKPHLEKAPNCPRCASANTKFCYYNNYSLSQPRYF 60
           MSDH Q+    PP PPPF +HLQRKWKPHLE APNCPRCAS NTKFCYYNNYSLSQPRYF
Sbjct: 6   MSDHQQL----PPPPPPFPSHLQRKWKPHLEAAPNCPRCASTNTKFCYYNNYSLSQPRYF 65

Query: 61  CKSCRRYWTKGGSLRNVPVGGGCRKTRRSKSSTSSTI----LPNVISTQITEPSSRSDID 120
           CKSCRRYWTKGGSLRNVPVGGGCRK+RR+KSS SS I     P++ S      SS SDID
Sbjct: 66  CKSCRRYWTKGGSLRNVPVGGGCRKSRRAKSSKSSAISRPSKPDLSSQTTDSSSSASDID 125

Query: 121 LAAVFAKFLNTPPSTKSHVSTSSPESTDPSNNLTAKNPEIFFEELSDLF----NQPEHR- 180
           LAAVFA+FLN+ P T     TSSPES DP      +  EIF E LSD+     NQ E   
Sbjct: 126 LAAVFARFLNSEPQT----LTSSPESVDP-----LEISEIFLEGLSDMLLDDENQREEEK 185

Query: 181 --ITNDYENFPFELQPELTID-ELWPSQPI-EQLQEWESFSCNYNAEFL 217
             I   YEN  F L+ EL ID E+W S  + EQ+QE +SFSCNY A  L
Sbjct: 186 QGIPGSYENVSFGLETELGIDEEVWASPEMQEQVQELDSFSCNYYANDL 221

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BLAST of CmoCh04G025460 vs. NCBI nr
Match: gi|1021548281|ref|XP_016165609.1| (PREDICTED: dof zinc finger protein DOF1.2 [Arachis ipaensis])

HSP 1 Score: 166.0 bits (419), Expect = 7.2e-38
Identity = 87/148 (58.78%), Postives = 103/148 (69.59%), Query Frame = 1


Query: 3   DHHQI--SHLPPPTPPPFAAHLQRKWKPHLEKAPNCPRCASANTKFCYYNNYSLSQPRYF 62
           DHH +  +H+P P PP        +WKP +E APNCPRCAS NTKFCYYNNYSLSQPRYF
Sbjct: 7   DHHIMLHNHIPMPMPP--------RWKPTIEVAPNCPRCASTNTKFCYYNNYSLSQPRYF 66

Query: 63  CKSCRRYWTKGGSLRNVPVGGGCRKTRRSKSSTSSTILP-----NVISTQITEPSSRSDI 122
           CK+CRRYWTKGGSLRNVPVGGGCRK RRSKS+ + T        +  S    +PSS  DI
Sbjct: 67  CKACRRYWTKGGSLRNVPVGGGCRKNRRSKSARNQTQHRLQGDYSSSSADAHQPSSSRDI 126

Query: 123 DLAAVFAKFLNTPPSTKSHVSTSSPEST 144
           D+A VFA FLN  P ++ H  +SS  ++
Sbjct: 127 DMAVVFANFLNQAPISEDHGGSSSSNNS 146

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BLAST of CmoCh04G025460 vs. NCBI nr
Match: gi|1012215914|ref|XP_015934433.1| (PREDICTED: dof zinc finger protein DOF1.2 [Arachis duranensis])

HSP 1 Score: 164.5 bits (415), Expect = 2.1e-37
Identity = 90/161 (55.90%), Postives = 106/161 (65.84%), Query Frame = 1


Query: 3   DHHQI--SHLPPPTPPPFAAHLQRKWKPHLEKAPNCPRCASANTKFCYYNNYSLSQPRYF 62
           DHH +  +H+P P PP         WKP +E APNCPRCAS NTKFCYYNNYSLSQPRYF
Sbjct: 7   DHHIMLHNHIPMPMPP--------SWKPTIEVAPNCPRCASTNTKFCYYNNYSLSQPRYF 66

Query: 63  CKSCRRYWTKGGSLRNVPVGGGCRKTRRSKSSTSSTILP------NVISTQITEPSSRSD 122
           CK+CRRYWTKGGSLRNVPVGGGCRK RRSKS+ + T         +  S    +PSS  D
Sbjct: 67  CKACRRYWTKGGSLRNVPVGGGCRKNRRSKSTRNQTQHRLQGEDYSSSSADAHQPSSSRD 126

Query: 123 IDLAAVFAKFLNTPPSTKSHVSTSSPESTDPSNNLTAKNPE 156
           ID+A VFA FLN  P ++ H  +SS  S +  N+     P+
Sbjct: 127 IDMAVVFANFLNQAPISEDHGGSSS-SSGETENDAVVVQPK 158

[Close]

BLAST of CmoCh04G025460 vs. NCBI nr
Match: gi|802559213|ref|XP_012066060.1| (PREDICTED: dof zinc finger protein DOF1.2 [Jatropha curcas])

HSP 1 Score: 161.4 bits (407), Expect = 1.8e-36
Identity = 96/180 (53.33%), Postives = 111/180 (61.67%), Query Frame = 1


Query: 5   HQISHLPPPTPPPFAAHLQRKWKPHLEKAPNCPRCASANTKFCYYNNYSLSQPRYFCKSC 64
           HQ S  P P        ++RKWK H+E APNCPRCAS NTKFCYYNNYSLSQPRYFCK+C
Sbjct: 10  HQYSSRPLP--------MERKWKSHVELAPNCPRCASTNTKFCYYNNYSLSQPRYFCKAC 69

Query: 65  RRYWTKGGSLRNVPVGGGCRKTRRSK----SSTSSTILPNVIS-----------TQITEP 124
           RRYWTKGGSLRNVPVGGGCRKTRR+K    S T   +  N  S           TQ  + 
Sbjct: 70  RRYWTKGGSLRNVPVGGGCRKTRRAKAVRASQTDRVVSLNNYSRDLTSSSVDSFTQENQT 129

Query: 125 SSRSDIDLAAVFAKFLNTPPSTKSHVSTSSPESTDPSNNLTAKNPEIFFEELSDLFNQPE 170
           S+ SDIDLA VFAKFLN           SS    + SN+LT +      E++SDL  + +
Sbjct: 130 SNGSDIDLAVVFAKFLN---------QDSSVNPNEFSNSLTVEK-----EKVSDLIQESD 167

The following BLAST results are available for this feature:

BLAST of CmoCh04G025460 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DOF35_ARATH	1.7e-31	60.19	Dof zinc finger protein DOF3.5 OS=Arabidopsis thaliana GN=DOF3.5 PE=3 SV=1	[more]
DOF12_ARATH	6.1e-29	41.59	Dof zinc finger protein DOF1.2 OS=Arabidopsis thaliana GN=DOF1.2 PE=2 SV=1	[more]
DOF18_ARATH	1.2e-27	68.29	Dof zinc finger protein DOF1.8 OS=Arabidopsis thaliana GN=DOF1.8 PE=2 SV=1	[more]
DOF46_ARATH	2.2e-26	46.15	Dof zinc finger protein DOF4.6 OS=Arabidopsis thaliana GN=DOF4.6 PE=2 SV=2	[more]
DOF21_ARATH	2.2e-26	82.81	Dof zinc finger protein DOF2.1 OS=Arabidopsis thaliana GN=DOF2.1 PE=2 SV=2	[more]

BLAST of CmoCh04G025460 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGG2_CUCSA	1.3e-62	62.88	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G338090 PE=4 SV=1	[more]
A0A067L3I5_JATCU	1.2e-36	53.33	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25217 PE=4 SV=1	[more]
A0A068VC27_COFCA	1.1e-35	46.30	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00012009001 PE=4 SV=1	[more]
K7KLZ8_SOYBN	1.1e-35	50.79	Uncharacterized protein OS=Glycine max GN=GLYMA_04G239500 PE=4 SV=1	[more]
A0A0D2N9D0_GOSRA	4.0e-35	46.95	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G081000 PE=4 SV=1	[more]

BLAST of CmoCh04G025460 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G52440.1	9.7e-33	60.19	Dof-type zinc finger DNA-binding family protein	[more]
AT1G21340.1	3.5e-30	41.59	Dof-type zinc finger DNA-binding family protein	[more]
AT1G64620.1	6.5e-29	68.29	Dof-type zinc finger DNA-binding family protein	[more]
AT4G24060.1	1.2e-27	46.15	Dof-type zinc finger DNA-binding family protein	[more]
AT2G28510.1	1.2e-27	82.81	Dof-type zinc finger DNA-binding family protein	[more]

BLAST of CmoCh04G025460 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659081848\|ref\|XP_008441540.1\|	2.9e-63	62.01	PREDICTED: dof zinc finger protein DOF1.2 [Cucumis melo]	[more]
gi\|778714878\|ref\|XP_004148826.2\|	1.9e-62	62.88	PREDICTED: dof zinc finger protein DOF1.2 [Cucumis sativus]	[more]
gi\|1021548281\|ref\|XP_016165609.1\|	7.2e-38	58.78	PREDICTED: dof zinc finger protein DOF1.2 [Arachis ipaensis]	[more]
gi\|1012215914\|ref\|XP_015934433.1\|	2.1e-37	55.90	PREDICTED: dof zinc finger protein DOF1.2 [Arachis duranensis]	[more]
gi\|802559213\|ref\|XP_012066060.1\|	1.8e-36	53.33	PREDICTED: dof zinc finger protein DOF1.2 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003851	Znf_Dof

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G025460.1	CmoCh04G025460.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003851	Zinc finger, Dof-type	PRODOM	PD007478		coord: 22..83 score: 3.0
IPR003851	Zinc finger, Dof-type	PFAM	PF02701	zf-Dof	coord: 32..88 score: 2.4
IPR003851	Zinc finger, Dof-type	PROSITE	PS01361	ZF_DOF_1	coord: 36..72 scor
IPR003851	Zinc finger, Dof-type	PROFILE	PS50884	ZF_DOF_2	coord: 34..88 score: 28
None	No IPR available	PANTHER	PTHR31992	FAMILY NOT NAMED	coord: 23..126 score: 8.6
None	No IPR available	PANTHER	PTHR31992:SF8	DOF ZINC FINGER PROTEIN DOF1.1-RELATED	coord: 23..126 score: 8.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G025460	Cucsa.077010	Cucumber (Gy14) v1	cgycmoB0128
CmoCh04G025460	CmaCh15G006190	Cucurbita maxima (Rimu)	cmacmoB309
CmoCh04G025460	CmaCh04G024290	Cucurbita maxima (Rimu)	cmacmoB729
CmoCh04G025460	Cla013851	Watermelon (97103) v1	cmowmB661
CmoCh04G025460	Csa6G338090	Cucumber (Chinese Long) v2	cmocuB762
CmoCh04G025460	MELO3C008400	Melon (DHL92) v3.5.1	cmomeB672
CmoCh04G025460	ClCG08G006520	Watermelon (Charleston Gray)	cmowcgB680
CmoCh04G025460	CSPI06G18020	Wild cucumber (PI 183967)	cmocpiB771
CmoCh04G025460	Lsi08G005290	Bottle gourd (USVL1VR-Ls)	cmolsiB697
CmoCh04G025460	Cp4.1LG13g04090	Cucurbita pepo (Zucchini)	cmocpeB657
CmoCh04G025460	Cp4.1LG01g20940	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G025460	MELO3C008400.2	Melon (DHL92) v3.6.1	cmomedB760
CmoCh04G025460	CsaV3_6G030900	Cucumber (Chinese Long) v3	cmocucB0902
CmoCh04G025460	Cla97C08G149340	Watermelon (97103) v2	cmowmbB760
CmoCh04G025460	Bhi04G001409	Wax gourd	cmowgoB0865
CmoCh04G025460	CsGy6G017500	Cucumber (Gy14) v2	cgybcmoB819
CmoCh04G025460	Carg01588	Silver-seed gourd	carcmoB1121
CmoCh04G025460	Carg15778	Silver-seed gourd	carcmoB0094

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G025460	CmoCh15G006230	Cucurbita moschata (Rifu)	cmocmoB262

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G025460	Cucurbita moschata (Rifu)	cmocmoB029
CmoCh04G025460	Cucurbita moschata (Rifu)	cmocmoB367
CmoCh04G025460	Cucumber (Gy14) v1	cgycmoB0137
CmoCh04G025460	Cucumber (Chinese Long) v2	cmocuB771
CmoCh04G025460	Watermelon (Charleston Gray)	cmowcgB605
CmoCh04G025460	Cucurbita pepo (Zucchini)	cmocpeB708
CmoCh04G025460	Bottle gourd (USVL1VR-Ls)	cmolsiB643
CmoCh04G025460	Cucumber (Gy14) v2	cgybcmoB950
CmoCh04G025460	Cucumber (Chinese Long) v3	cmocucB0911
CmoCh04G025460	Watermelon (97103) v2	cmowmbB770