Cp4.1LG01g20940 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g20940
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionDof zinc finger protein
LocationCp4.1LG01 : 17804089 .. 17804727 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCGATCACCACCAGATCTCCCATCTTCCTCCGCCGTTCGCCGCCCATCTCGAACGGAAATGGAAGCCCCATCTCGAAAAAGCCCCCAATTGCCCCCGTTGCGCCTCCGCCAACACCAAATTCTGTTATTACAACAACTACAGCCTCTCCCAACCTCGTTACTTCTGTAAATCCTGCCGCCGCTACTGGACCAAAGGCGGCTCCCTCCGCAACGTCCCCGTCGGCGGCGGCTGCCGCAAGACCCGCCGTTCCAAATCCTCAACCTCCTCCACTATCTTACCAAACGTAATTTCAACCCAAATTACCGAACACTCTTCCCGATCCGATATCGATCTTGCTGCCGTTTTCGCTAAATTTTTAAACACCCCATCGAGCACAAAGCCCCACGTATCGACCAGCTCCCCGGAATCGACTGACCCATCAGACAATCTAACAGCCAAGAATCCCGAGATCTTCTTCGAAGAGCTATCCGATTTATTCAATCAACCCGAAGATCGGATTACAAAGGACTATGAAAATTTCCCATTTGAGTTACAACCCGAACTAACCATCGATGAACTATGGCCATCGCAACCGATCGAACAACTTCAAGAATGGGAATCTTTCTCGTGCAATTACAACGCGGAATTTTTGTGA

mRNA sequence

ATGTCCGATCACCACCAGATCTCCCATCTTCCTCCGCCGTTCGCCGCCCATCTCGAACGGAAATGGAAGCCCCATCTCGAAAAAGCCCCCAATTGCCCCCGTTGCGCCTCCGCCAACACCAAATTCTGTTATTACAACAACTACAGCCTCTCCCAACCTCGTTACTTCTGTAAATCCTGCCGCCGCTACTGGACCAAAGGCGGCTCCCTCCGCAACGTCCCCGTCGGCGGCGGCTGCCGCAAGACCCGCCGTTCCAAATCCTCAACCTCCTCCACTATCTTACCAAACGTAATTTCAACCCAAATTACCGAACACTCTTCCCGATCCGATATCGATCTTGCTGCCGTTTTCGCTAAATTTTTAAACACCCCATCGAGCACAAAGCCCCACGTATCGACCAGCTCCCCGGAATCGACTGACCCATCAGACAATCTAACAGCCAAGAATCCCGAGATCTTCTTCGAAGAGCTATCCGATTTATTCAATCAACCCGAAGATCGGATTACAAAGGACTATGAAAATTTCCCATTTGAGTTACAACCCGAACTAACCATCGATGAACTATGGCCATCGCAACCGATCGAACAACTTCAAGAATGGGAATCTTTCTCGTGCAATTACAACGCGGAATTTTTGTGA

Coding sequence (CDS)

ATGTCCGATCACCACCAGATCTCCCATCTTCCTCCGCCGTTCGCCGCCCATCTCGAACGGAAATGGAAGCCCCATCTCGAAAAAGCCCCCAATTGCCCCCGTTGCGCCTCCGCCAACACCAAATTCTGTTATTACAACAACTACAGCCTCTCCCAACCTCGTTACTTCTGTAAATCCTGCCGCCGCTACTGGACCAAAGGCGGCTCCCTCCGCAACGTCCCCGTCGGCGGCGGCTGCCGCAAGACCCGCCGTTCCAAATCCTCAACCTCCTCCACTATCTTACCAAACGTAATTTCAACCCAAATTACCGAACACTCTTCCCGATCCGATATCGATCTTGCTGCCGTTTTCGCTAAATTTTTAAACACCCCATCGAGCACAAAGCCCCACGTATCGACCAGCTCCCCGGAATCGACTGACCCATCAGACAATCTAACAGCCAAGAATCCCGAGATCTTCTTCGAAGAGCTATCCGATTTATTCAATCAACCCGAAGATCGGATTACAAAGGACTATGAAAATTTCCCATTTGAGTTACAACCCGAACTAACCATCGATGAACTATGGCCATCGCAACCGATCGAACAACTTCAAGAATGGGAATCTTTCTCGTGCAATTACAACGCGGAATTTTTGTGA

Protein sequence

MSDHHQISHLPPPFAAHLERKWKPHLEKAPNCPRCASANTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNVPVGGGCRKTRRSKSSTSSTILPNVISTQITEHSSRSDIDLAAVFAKFLNTPSSTKPHVSTSSPESTDPSDNLTAKNPEIFFEELSDLFNQPEDRITKDYENFPFELQPELTIDELWPSQPIEQLQEWESFSCNYNAEFL
Homology
[Close]
BLAST of Cp4.1LG01g20940 vs. Swiss-Prot
Match: DOF35_ARATH (Dof zinc finger protein DOF3.5 OS=Arabidopsis thaliana GN=DOF3.5 PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.9e-31
Identity = 64/105 (60.95%), Postives = 76/105 (72.38%), Query Frame = 1 

Query: 22  WKPHL----EKAPNCPRCASANTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNVPVGG 81
           W+P+     E  P+CPRC S+NTKFCYYNNYSL+QPRYFCK CRRYWTKGGSLRNVPVGG
Sbjct: 13  WRPNANANAEITPSCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGG 72

Query: 82  GCRKTRRSKSSTSSTILPNVISTQITEHSSRSDIDLAAVFAKFLN 123
           GCRK+RR KSS+ +    ++ +           IDLA V+A FLN
Sbjct: 73  GCRKSRRPKSSSGNNTKTSLTANSGNPGGGSPSIDLALVYANFLN 117

[Close]
BLAST of Cp4.1LG01g20940 vs. Swiss-Prot
Match: DOF12_ARATH (Dof zinc finger protein DOF1.2 OS=Arabidopsis thaliana GN=DOF1.2 PE=2 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 4.6e-29
Identity = 89/214 (41.59%), Postives = 120/214 (56.07%), Query Frame = 1 

Query: 18  LERKWKPHLEK----APNCPRCASANTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNV 77
           +  KWK   E+    AP CPRCAS+NTKFCYYNNYSLSQPRYFCK CRRYWTKGGSLRN+
Sbjct: 22  IPEKWKLSYEQEAITAPACPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNI 81

Query: 78  PVGGGCRKTRRSKSSTSSTI-----LPNVISTQITEHSSR---SDIDLAAVFAKFLNTPS 137
           PVGGGCRK  RS+ ++          P+ +  Q     S    SDIDLAAVFA+++   S
Sbjct: 82  PVGGGCRKRSRSRQNSHKRFGRNENRPDGLINQDDGFQSSPPGSDIDLAAVFAQYVTDRS 141

Query: 138 STKPHVSTSSPES---TDPSDNLTAKNPEIFFEELSDL-----FNQPEDRITKDYENFPF 197
            +    +T S +    T  +  L + + +I  E   DL     FN    +  +D E F  
Sbjct: 142 PSSTDNTTGSDQDSPITTTTHALESLSWDICQETDVDLGFYGEFNNLTQKTKEDQEVFGQ 201

Query: 198 ELQPELTIDELWPSQP-IEQLQEWESFSCNYNAE 211
            LQ +   +E++  Q  ++  +  E   C+++ E
Sbjct: 202 FLQEDR--EEIFEFQGLLDDKEIQEILECSFSEE 233

[Close]
BLAST of Cp4.1LG01g20940 vs. Swiss-Prot
Match: DOF18_ARATH (Dof zinc finger protein DOF1.8 OS=Arabidopsis thaliana GN=DOF1.8 PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.1e-27
Identity = 68/128 (53.12%), Postives = 85/128 (66.41%), Query Frame = 1 

Query: 11  PPPFAAHLERKWKPHLEKAPNCPRCASANTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSL 70
           PP  A  +ERK +P  ++A NCPRC S NTKFCYYNNYSL+QPRYFCK CRRYWT GGSL
Sbjct: 30  PPSPATPVERKARPEKDQALNCPRCNSLNTKFCYYNNYSLTQPRYFCKDCRRYWTAGGSL 89

Query: 71  RNVPVGGGCRKTRRSKSSTSSTILPNVISTQITEHSSRSDIDLAAVFAKFLNTPSSTKPH 130
           RN+PVGGG RK +RS S++SS       S+  +  SS+  +     FA   NTP+   PH
Sbjct: 90  RNIPVGGGVRKNKRSSSNSSS-------SSPSSSSSSKKPL-----FAN-NNTPTPPLPH 144

Query: 131 VSTSSPES 139
           ++    E+
Sbjct: 150 LNPKIGEA 144

[Close]
BLAST of Cp4.1LG01g20940 vs. Swiss-Prot
Match: DOF46_ARATH (Dof zinc finger protein DOF4.6 OS=Arabidopsis thaliana GN=DOF4.6 PE=2 SV=2)

HSP 1 Score: 123.2 bits (308), Expect = 3.3e-27
Identity = 59/92 (64.13%), Postives = 68/92 (73.91%), Query Frame = 1 

Query: 19  ERKWKPHLEKAPNCPRCASANTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNVPVGGG 78
           ERK +P  ++A NCPRC S NTKFCYYNNYSL+QPRYFCK CRRYWT+GGSLRN+PVGGG
Sbjct: 42  ERKARPEKDQAVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNIPVGGG 101

Query: 79  CRKTRRSKSSTSSTILPNVISTQITEHSSRSD 111
            RK +RS SS+S     +  STQ       SD
Sbjct: 102 SRKNKRSHSSSSDISNNHSDSTQPATKKHLSD 133

[Close]
BLAST of Cp4.1LG01g20940 vs. Swiss-Prot
Match: DOF21_ARATH (Dof zinc finger protein DOF2.1 OS=Arabidopsis thaliana GN=DOF2.1 PE=2 SV=2)

HSP 1 Score: 120.9 bits (302), Expect = 1.6e-26
Identity = 53/64 (82.81%), Postives = 57/64 (89.06%), Query Frame = 1 

Query: 28  KAPNCPRCASANTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNVPVGGGCRKTRRSKS 87
           +A NCPRC S NTKFCYYNNYSLSQPRYFCKSCRRYWTKGG+LRNVPVGGGCR+ +RS S
Sbjct: 46  EAQNCPRCESPNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRRNKRSSS 105

Query: 88  STSS 92
           S  S
Sbjct: 106 SAFS 109

[Close]
BLAST of Cp4.1LG01g20940 vs. TrEMBL
Match: A0A0A0KGG2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G338090 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 3.8e-62
Identity = 140/225 (62.22%), Postives = 158/225 (70.22%), Query Frame = 1 

Query: 1   MSDHHQISHLPPPFAAHLERKWKPHLEKAPNCPRCASANTKFCYYNNYSLSQPRYFCKSC 60
           MSDH Q+   PPPF +HL+RKWKPHLE APNCPRCAS NTKFCYYNNYSLSQPRYFCKSC
Sbjct: 6   MSDHQQLPPPPPPFPSHLQRKWKPHLEAAPNCPRCASTNTKFCYYNNYSLSQPRYFCKSC 65

Query: 61  RRYWTKGGSLRNVPVGGGCRKTRRSKSSTSSTI----LPNVISTQITEHSSRSDIDLAAV 120
           RRYWTKGGSLRNVPVGGGCRK+RR+KSS SS I     P++ S      SS SDIDLAAV
Sbjct: 66  RRYWTKGGSLRNVPVGGGCRKSRRAKSSKSSAISRPSKPDLSSQTTDSSSSASDIDLAAV 125

Query: 121 FAKFLNTPSSTKPHVSTSSPESTDPSDNLTAKNPEIFFEELSDLF----NQPEDR---IT 180
           FA+FLN    ++P   TSSPES DP      +  EIF E LSD+     NQ E+    I 
Sbjct: 126 FARFLN----SEPQTLTSSPESVDP-----LEISEIFLEGLSDMLLDDENQREEEKQGIP 185

Query: 181 KDYENFPFELQPELTID-ELWPSQPI-EQLQEWESFSCNYNAEFL 213
             YEN  F L+ EL ID E+W S  + EQ+QE +SFSCNY A  L
Sbjct: 186 GSYENVSFGLETELGIDEEVWASPEMQEQVQELDSFSCNYYANDL 221

[Close]
BLAST of Cp4.1LG01g20940 vs. TrEMBL
Match: A0A067L3I5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25217 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.0e-38
Identity = 98/177 (55.37%), Postives = 114/177 (64.41%), Query Frame = 1 

Query: 5   HQISHLPPPFAAHLERKWKPHLEKAPNCPRCASANTKFCYYNNYSLSQPRYFCKSCRRYW 64
           HQ S  P P    +ERKWK H+E APNCPRCAS NTKFCYYNNYSLSQPRYFCK+CRRYW
Sbjct: 10  HQYSSRPLP----MERKWKSHVELAPNCPRCASTNTKFCYYNNYSLSQPRYFCKACRRYW 69

Query: 65  TKGGSLRNVPVGGGCRKTRRSK----SSTSSTILPNVIS-----------TQITEHSSRS 124
           TKGGSLRNVPVGGGCRKTRR+K    S T   +  N  S           TQ  + S+ S
Sbjct: 70  TKGGSLRNVPVGGGCRKTRRAKAVRASQTDRVVSLNNYSRDLTSSSVDSFTQENQTSNGS 129

Query: 125 DIDLAAVFAKFLNTPSSTKPHVSTSSPESTDPSDNLTAKNPEIFFEELSDLFNQPED 167
           DIDLA VFAKFLN  SS  P+         + S++LT +      E++SDL  + +D
Sbjct: 130 DIDLAVVFAKFLNQDSSVNPN---------EFSNSLTVEK-----EKVSDLIQESDD 168

[Close]
BLAST of Cp4.1LG01g20940 vs. TrEMBL
Match: A0A0D2N9D0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G081000 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.7e-36
Identity = 105/214 (49.07%), Postives = 122/214 (57.01%), Query Frame = 1 

Query: 18  LERKWKPHLEKAPNCPRCASANTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNVPVGG 77
           +ERKWK ++E APNCPRCASANTKFCYYNNYSLSQPRYFCK CRRYWTKGGSLRNVPVGG
Sbjct: 20  IERKWKSNVETAPNCPRCASANTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGG 79

Query: 78  GCRKTRRSKS---------STSSTILPNVISTQITEHSSRSDIDLAAVFAKFLN-TPSST 137
           GCRK+RR KS           S T   N  S+   +  ++ DIDLA VFAKFLN   S  
Sbjct: 80  GCRKSRRGKSRRERVEKRDQISMTDSKNSTSSSDGDSGNQPDIDLALVFAKFLNHNTSFD 139

Query: 138 KPHVSTSSPESTDPSDNLTAKNPEIFFEELSDLFNQPEDRITKDYENFPFELQPELTIDE 197
           +P V   + + +   +N + K           L   PE   T   E   F LQ  LT DE
Sbjct: 140 QPEVDEIATQESPNEENNSQKPVVGSIPGSYILQEMPE---TSQME--AFGLQNLLTGDE 199

Query: 198 ------LWPS------------QPIEQLQEWESF 204
                 LW              QP+ QLQ++ESF
Sbjct: 200 MVLHEDLWSDHDVATTTPDMEWQPLVQLQQYESF 228

[Close]
BLAST of Cp4.1LG01g20940 vs. TrEMBL
Match: A0A068VC27_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00012009001 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 4.6e-36
Identity = 98/205 (47.80%), Postives = 121/205 (59.02%), Query Frame = 1 

Query: 20  RKWKPHLEKAPNCPRCASANTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNVPVGGGC 79
           R+WK   E APNCPRCAS+NTKFCYYNNYS+SQPRYFCK CRRYWTKGGSLRNVPVGGGC
Sbjct: 13  RRWKSSTESAPNCPRCASSNTKFCYYNNYSMSQPRYFCKGCRRYWTKGGSLRNVPVGGGC 72

Query: 80  RKTRRSKSSTSSTIL--------PNVISTQITEHSSRSDIDLAAVFAKFLNTPSST---- 139
           RKTRRSKS+  +  L        P   S +    S+ +DIDLAAVFAKFLN   S+    
Sbjct: 73  RKTRRSKSARQADRLGLIYQMPSPGRASDESNNSSNGADIDLAAVFAKFLNQDDSSNDLD 132

Query: 140 KPHVSTSSPESTDPSDNLTAKNPEIFFE---ELSDLFNQ---PEDRITKDYENFPFELQP 199
           K HVST    S       +   P  + +   ++ D+  Q   P D I  D  +   E  P
Sbjct: 133 KIHVSTDQESSLSGLSRTSLDLPLGYLDRENQIEDMIFQCQKPTDFIDGDQMH---EGHP 192

Query: 200 ELTIDELWPSQPIEQLQEWESFSCN 207
            L++D       ++ ++E    +CN
Sbjct: 193 SLSMD-------VDNIEELLDQNCN 207

[Close]
BLAST of Cp4.1LG01g20940 vs. TrEMBL
Match: K7KUP9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G124300 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 7.9e-36
Identity = 99/218 (45.41%), Postives = 121/218 (55.50%), Query Frame = 1 

Query: 6   QISHLPPPFAAHLER-KWKPHLEKAPNCPRCASANTKFCYYNNYSLSQPRYFCKSCRRYW 65
           Q  H P P     +R +WKP +E APNCPRCAS NTKFCYYNNYSLSQPRYFCK CRRYW
Sbjct: 20  QPHHFPSPMEQQQQRSRWKPSVEVAPNCPRCASTNTKFCYYNNYSLSQPRYFCKGCRRYW 79

Query: 66  TKGGSLRNVPVGGGCRKTRRSKSSTSSTILPNVISTQITEHSSRS------------DID 125
           TKGGSLRNVPVGGGCRK RR KS  SS+      S+ ++  +  S            DID
Sbjct: 80  TKGGSLRNVPVGGGCRKNRRGKSLQSSSSRQQRASSFVSGDTESSFSDAQQINNGSRDID 139

Query: 126 LAAVFAKFLNTPSSTKPHVSTSSPESTDPSDNLTAKNPEIFFEELSDLFNQ-PEDRITKD 185
           +A VFAKFLN     KP     +  S+  S+N T ++ EI  + +    N+   D +  +
Sbjct: 140 MALVFAKFLN----PKPTTGEDNNGSSSTSNNFTPESVEIENDAVVQSQNKASSDPVIVE 199

Query: 186 YENFPF----ELQPELTI----DELWPSQPIEQLQEWE 202
            EN       EL+  L +    D LW    +     WE
Sbjct: 200 SENLSLGEIDELERLLGVCGDEDGLWSDATLSSSVTWE 233

[Close]
BLAST of Cp4.1LG01g20940 vs. TAIR10
Match: AT3G52440.1 (AT3G52440.1 Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 136.7 bits (343), Expect = 1.6e-32
Identity = 64/105 (60.95%), Postives = 76/105 (72.38%), Query Frame = 1 

Query: 22  WKPHL----EKAPNCPRCASANTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNVPVGG 81
           W+P+     E  P+CPRC S+NTKFCYYNNYSL+QPRYFCK CRRYWTKGGSLRNVPVGG
Sbjct: 13  WRPNANANAEITPSCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGG 72

Query: 82  GCRKTRRSKSSTSSTILPNVISTQITEHSSRSDIDLAAVFAKFLN 123
           GCRK+RR KSS+ +    ++ +           IDLA V+A FLN
Sbjct: 73  GCRKSRRPKSSSGNNTKTSLTANSGNPGGGSPSIDLALVYANFLN 117

[Close]
BLAST of Cp4.1LG01g20940 vs. TAIR10
Match: AT1G21340.1 (AT1G21340.1 Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 129.4 bits (324), Expect = 2.6e-30
Identity = 89/214 (41.59%), Postives = 120/214 (56.07%), Query Frame = 1 

Query: 18  LERKWKPHLEK----APNCPRCASANTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNV 77
           +  KWK   E+    AP CPRCAS+NTKFCYYNNYSLSQPRYFCK CRRYWTKGGSLRN+
Sbjct: 22  IPEKWKLSYEQEAITAPACPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNI 81

Query: 78  PVGGGCRKTRRSKSSTSSTI-----LPNVISTQITEHSSR---SDIDLAAVFAKFLNTPS 137
           PVGGGCRK  RS+ ++          P+ +  Q     S    SDIDLAAVFA+++   S
Sbjct: 82  PVGGGCRKRSRSRQNSHKRFGRNENRPDGLINQDDGFQSSPPGSDIDLAAVFAQYVTDRS 141

Query: 138 STKPHVSTSSPES---TDPSDNLTAKNPEIFFEELSDL-----FNQPEDRITKDYENFPF 197
            +    +T S +    T  +  L + + +I  E   DL     FN    +  +D E F  
Sbjct: 142 PSSTDNTTGSDQDSPITTTTHALESLSWDICQETDVDLGFYGEFNNLTQKTKEDQEVFGQ 201

Query: 198 ELQPELTIDELWPSQP-IEQLQEWESFSCNYNAE 211
            LQ +   +E++  Q  ++  +  E   C+++ E
Sbjct: 202 FLQEDR--EEIFEFQGLLDDKEIQEILECSFSEE 233

[Close]
BLAST of Cp4.1LG01g20940 vs. TAIR10
Match: AT1G64620.1 (AT1G64620.1 Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 124.8 bits (312), Expect = 6.4e-29
Identity = 68/128 (53.12%), Postives = 85/128 (66.41%), Query Frame = 1 

Query: 11  PPPFAAHLERKWKPHLEKAPNCPRCASANTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSL 70
           PP  A  +ERK +P  ++A NCPRC S NTKFCYYNNYSL+QPRYFCK CRRYWT GGSL
Sbjct: 30  PPSPATPVERKARPEKDQALNCPRCNSLNTKFCYYNNYSLTQPRYFCKDCRRYWTAGGSL 89

Query: 71  RNVPVGGGCRKTRRSKSSTSSTILPNVISTQITEHSSRSDIDLAAVFAKFLNTPSSTKPH 130
           RN+PVGGG RK +RS S++SS       S+  +  SS+  +     FA   NTP+   PH
Sbjct: 90  RNIPVGGGVRKNKRSSSNSSS-------SSPSSSSSSKKPL-----FAN-NNTPTPPLPH 144

Query: 131 VSTSSPES 139
           ++    E+
Sbjct: 150 LNPKIGEA 144

[Close]
BLAST of Cp4.1LG01g20940 vs. TAIR10
Match: AT4G24060.1 (AT4G24060.1 Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 123.2 bits (308), Expect = 1.9e-28
Identity = 59/92 (64.13%), Postives = 68/92 (73.91%), Query Frame = 1 

Query: 19  ERKWKPHLEKAPNCPRCASANTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNVPVGGG 78
           ERK +P  ++A NCPRC S NTKFCYYNNYSL+QPRYFCK CRRYWT+GGSLRN+PVGGG
Sbjct: 42  ERKARPEKDQAVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNIPVGGG 101

Query: 79  CRKTRRSKSSTSSTILPNVISTQITEHSSRSD 111
            RK +RS SS+S     +  STQ       SD
Sbjct: 102 SRKNKRSHSSSSDISNNHSDSTQPATKKHLSD 133

[Close]
BLAST of Cp4.1LG01g20940 vs. TAIR10
Match: AT2G28510.1 (AT2G28510.1 Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 120.9 bits (302), Expect = 9.2e-28
Identity = 53/64 (82.81%), Postives = 57/64 (89.06%), Query Frame = 1 

Query: 28  KAPNCPRCASANTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNVPVGGGCRKTRRSKS 87
           +A NCPRC S NTKFCYYNNYSLSQPRYFCKSCRRYWTKGG+LRNVPVGGGCR+ +RS S
Sbjct: 46  EAQNCPRCESPNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRRNKRSSS 105

Query: 88  STSS 92
           S  S
Sbjct: 106 SAFS 109

[Close]
BLAST of Cp4.1LG01g20940 vs. NCBI nr
Match: gi|659081848|ref|XP_008441540.1| (PREDICTED: dof zinc finger protein DOF1.2 [Cucumis melo])

HSP 1 Score: 251.5 bits (641), Expect = 1.3e-63
Identity = 141/225 (62.67%), Postives = 161/225 (71.56%), Query Frame = 1 

Query: 1   MSDHHQISHLPPPFAAHLERKWKPHLEKAPNCPRCASANTKFCYYNNYSLSQPRYFCKSC 60
           MSDHHQ+   PPPF +HLERKWKPHLE APNCPRCAS NTKFCYYNNYSLSQPRYFCKSC
Sbjct: 6   MSDHHQLPPPPPPFPSHLERKWKPHLETAPNCPRCASTNTKFCYYNNYSLSQPRYFCKSC 65

Query: 61  RRYWTKGGSLRNVPVGGGCRKTRRSKSSTSSTI----LPNVISTQITEHSSRSDIDLAAV 120
           RRYWTKGGSLRNVPVGGGCRK+RR+KSS SS I     P++ S      SS SDIDLAAV
Sbjct: 66  RRYWTKGGSLRNVPVGGGCRKSRRAKSSKSSPISRPSKPDLSSQTTDSSSSASDIDLAAV 125

Query: 121 FAKFLNTPSSTKPHVSTSSPESTDPSDNLTAKNPEIFFEELSDLFNQPEDR-------IT 180
           FA+FLN    ++P   TSSPES DP      +  EIF E LSDL  + E++       I 
Sbjct: 126 FARFLN----SEPQALTSSPESVDP-----LEISEIFLEGLSDLLLEDENQREEGKQGIP 185

Query: 181 KDYENFPFELQPELTID-ELWPSQPI-EQLQEWESFSCNYNAEFL 213
            ++EN  F L+ EL ID E+W SQ + EQ+QE +SFSCNY A  L
Sbjct: 186 GNHENVSFGLETELGIDEEVWASQEMQEQVQELDSFSCNYYANDL 221

[Close]
BLAST of Cp4.1LG01g20940 vs. NCBI nr
Match: gi|778714878|ref|XP_004148826.2| (PREDICTED: dof zinc finger protein DOF1.2 [Cucumis sativus])

HSP 1 Score: 246.1 bits (627), Expect = 5.4e-62
Identity = 140/225 (62.22%), Postives = 158/225 (70.22%), Query Frame = 1 

Query: 1   MSDHHQISHLPPPFAAHLERKWKPHLEKAPNCPRCASANTKFCYYNNYSLSQPRYFCKSC 60
           MSDH Q+   PPPF +HL+RKWKPHLE APNCPRCAS NTKFCYYNNYSLSQPRYFCKSC
Sbjct: 6   MSDHQQLPPPPPPFPSHLQRKWKPHLEAAPNCPRCASTNTKFCYYNNYSLSQPRYFCKSC 65

Query: 61  RRYWTKGGSLRNVPVGGGCRKTRRSKSSTSSTI----LPNVISTQITEHSSRSDIDLAAV 120
           RRYWTKGGSLRNVPVGGGCRK+RR+KSS SS I     P++ S      SS SDIDLAAV
Sbjct: 66  RRYWTKGGSLRNVPVGGGCRKSRRAKSSKSSAISRPSKPDLSSQTTDSSSSASDIDLAAV 125

Query: 121 FAKFLNTPSSTKPHVSTSSPESTDPSDNLTAKNPEIFFEELSDLF----NQPEDR---IT 180
           FA+FLN    ++P   TSSPES DP      +  EIF E LSD+     NQ E+    I 
Sbjct: 126 FARFLN----SEPQTLTSSPESVDP-----LEISEIFLEGLSDMLLDDENQREEEKQGIP 185

Query: 181 KDYENFPFELQPELTID-ELWPSQPI-EQLQEWESFSCNYNAEFL 213
             YEN  F L+ EL ID E+W S  + EQ+QE +SFSCNY A  L
Sbjct: 186 GSYENVSFGLETELGIDEEVWASPEMQEQVQELDSFSCNYYANDL 221

[Close]
BLAST of Cp4.1LG01g20940 vs. NCBI nr
Match: gi|802559213|ref|XP_012066060.1| (PREDICTED: dof zinc finger protein DOF1.2 [Jatropha curcas])

HSP 1 Score: 168.3 bits (425), Expect = 1.4e-38
Identity = 98/177 (55.37%), Postives = 114/177 (64.41%), Query Frame = 1 

Query: 5   HQISHLPPPFAAHLERKWKPHLEKAPNCPRCASANTKFCYYNNYSLSQPRYFCKSCRRYW 64
           HQ S  P P    +ERKWK H+E APNCPRCAS NTKFCYYNNYSLSQPRYFCK+CRRYW
Sbjct: 10  HQYSSRPLP----MERKWKSHVELAPNCPRCASTNTKFCYYNNYSLSQPRYFCKACRRYW 69

Query: 65  TKGGSLRNVPVGGGCRKTRRSK----SSTSSTILPNVIS-----------TQITEHSSRS 124
           TKGGSLRNVPVGGGCRKTRR+K    S T   +  N  S           TQ  + S+ S
Sbjct: 70  TKGGSLRNVPVGGGCRKTRRAKAVRASQTDRVVSLNNYSRDLTSSSVDSFTQENQTSNGS 129

Query: 125 DIDLAAVFAKFLNTPSSTKPHVSTSSPESTDPSDNLTAKNPEIFFEELSDLFNQPED 167
           DIDLA VFAKFLN  SS  P+         + S++LT +      E++SDL  + +D
Sbjct: 130 DIDLAVVFAKFLNQDSSVNPN---------EFSNSLTVEK-----EKVSDLIQESDD 168

[Close]
BLAST of Cp4.1LG01g20940 vs. NCBI nr
Match: gi|1000951976|ref|XP_002526146.2| (PREDICTED: dof zinc finger protein DOF3.5 [Ricinus communis])

HSP 1 Score: 160.6 bits (405), Expect = 3.0e-36
Identity = 91/161 (56.52%), Postives = 107/161 (66.46%), Query Frame = 1 

Query: 2   SDHHQISHLPPPFAAHLERKWKPHLEKAPNCPRCASANTKFCYYNNYSLSQPRYFCKSCR 61
           SDHHQI          +E KWK H+E AP+CPRCAS+NTKFCYYNNYSLSQPRYFCK CR
Sbjct: 4   SDHHQIMLQCSARPLPMEGKWKTHVELAPSCPRCASSNTKFCYYNNYSLSQPRYFCKGCR 63

Query: 62  RYWTKGGSLRNVPVGGGCRKTRRSKSS----------------TSSTILPNVIST--QIT 121
           RYWTKGGSLRNVPVGGGCRK+RR+KSS                + S+   N+ ST  +  
Sbjct: 64  RYWTKGGSLRNVPVGGGCRKSRRAKSSRGAVSMNYGKNFNGPLSGSSCSSNMDSTVQETG 123

Query: 122 EHSSRSDIDLAAVFAKFLNTPSSTKPH-VSTSSPESTDPSD 144
            ++  S+IDLA VFAKFLN  SS +P  V    P+  +PSD
Sbjct: 124 SNNDGSEIDLAVVFAKFLNQESSFQPEFVGKELPD--EPSD 162

[Close]
BLAST of Cp4.1LG01g20940 vs. NCBI nr
Match: gi|823165012|ref|XP_012482447.1| (PREDICTED: dof zinc finger protein DOF3.5-like [Gossypium raimondii])

HSP 1 Score: 160.2 bits (404), Expect = 3.9e-36
Identity = 105/214 (49.07%), Postives = 122/214 (57.01%), Query Frame = 1 

Query: 18  LERKWKPHLEKAPNCPRCASANTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNVPVGG 77
           +ERKWK ++E APNCPRCASANTKFCYYNNYSLSQPRYFCK CRRYWTKGGSLRNVPVGG
Sbjct: 20  IERKWKSNVETAPNCPRCASANTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGG 79

Query: 78  GCRKTRRSKS---------STSSTILPNVISTQITEHSSRSDIDLAAVFAKFLN-TPSST 137
           GCRK+RR KS           S T   N  S+   +  ++ DIDLA VFAKFLN   S  
Sbjct: 80  GCRKSRRGKSRRERVEKRDQISMTDSKNSTSSSDGDSGNQPDIDLALVFAKFLNHNTSFD 139

Query: 138 KPHVSTSSPESTDPSDNLTAKNPEIFFEELSDLFNQPEDRITKDYENFPFELQPELTIDE 197
           +P V   + + +   +N + K           L   PE   T   E   F LQ  LT DE
Sbjct: 140 QPEVDEIATQESPNEENNSQKPVVGSIPGSYILQEMPE---TSQME--AFGLQNLLTGDE 199

Query: 198 ------LWPS------------QPIEQLQEWESF 204
                 LW              QP+ QLQ++ESF
Sbjct: 200 MVLHEDLWSDHDVATTTPDMEWQPLVQLQQYESF 228

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g20940 vs. Swiss-Prot
Match NameE-valueIdentityDescription
DOF35_ARATH2.9e-3160.95Dof zinc finger protein DOF3.5 OS=Arabidopsis thaliana GN=DOF3.5 PE=3 SV=1[more]
DOF12_ARATH4.6e-2941.59Dof zinc finger protein DOF1.2 OS=Arabidopsis thaliana GN=DOF1.2 PE=2 SV=1[more]
DOF18_ARATH1.1e-2753.13Dof zinc finger protein DOF1.8 OS=Arabidopsis thaliana GN=DOF1.8 PE=2 SV=1[more]
DOF46_ARATH3.3e-2764.13Dof zinc finger protein DOF4.6 OS=Arabidopsis thaliana GN=DOF4.6 PE=2 SV=2[more]
DOF21_ARATH1.6e-2682.81Dof zinc finger protein DOF2.1 OS=Arabidopsis thaliana GN=DOF2.1 PE=2 SV=2[more]
BLAST of Cp4.1LG01g20940 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KGG2_CUCSA3.8e-6262.22Uncharacterized protein OS=Cucumis sativus GN=Csa_6G338090 PE=4 SV=1[more]
A0A067L3I5_JATCU1.0e-3855.37Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25217 PE=4 SV=1[more]
A0A0D2N9D0_GOSRA2.7e-3649.07Uncharacterized protein OS=Gossypium raimondii GN=B456_005G081000 PE=4 SV=1[more]
A0A068VC27_COFCA4.6e-3647.80Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00012009001 PE=4 SV=1[more]
K7KUP9_SOYBN7.9e-3645.41Uncharacterized protein OS=Glycine max GN=GLYMA_06G124300 PE=4 SV=1[more]
BLAST of Cp4.1LG01g20940 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G52440.11.6e-3260.95 Dof-type zinc finger DNA-binding family protein[more]
AT1G21340.12.6e-3041.59 Dof-type zinc finger DNA-binding family protein[more]
AT1G64620.16.4e-2953.13 Dof-type zinc finger DNA-binding family protein[more]
AT4G24060.11.9e-2864.13 Dof-type zinc finger DNA-binding family protein[more]
AT2G28510.19.2e-2882.81 Dof-type zinc finger DNA-binding family protein[more]
BLAST of Cp4.1LG01g20940 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659081848|ref|XP_008441540.1|1.3e-6362.67PREDICTED: dof zinc finger protein DOF1.2 [Cucumis melo][more]
gi|778714878|ref|XP_004148826.2|5.4e-6262.22PREDICTED: dof zinc finger protein DOF1.2 [Cucumis sativus][more]
gi|802559213|ref|XP_012066060.1|1.4e-3855.37PREDICTED: dof zinc finger protein DOF1.2 [Jatropha curcas][more]
gi|1000951976|ref|XP_002526146.2|3.0e-3656.52PREDICTED: dof zinc finger protein DOF3.5 [Ricinus communis][more]
gi|823165012|ref|XP_012482447.1|3.9e-3649.07PREDICTED: dof zinc finger protein DOF3.5-like [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR003851Znf_Dof
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g20940.1Cp4.1LG01g20940.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003851Zinc finger, Dof-typePRODOMPD007478coord: 18..79
score: 2.0
IPR003851Zinc finger, Dof-typePFAMPF02701zf-Dofcoord: 28..84
score: 2.4
IPR003851Zinc finger, Dof-typePROSITEPS01361ZF_DOF_1coord: 32..68
scor
IPR003851Zinc finger, Dof-typePROFILEPS50884ZF_DOF_2coord: 30..84
score: 28
NoneNo IPR availablePANTHERPTHR31992FAMILY NOT NAMEDcoord: 19..122
score: 9.2
NoneNo IPR availablePANTHERPTHR31992:SF8DOF ZINC FINGER PROTEIN DOF1.1-RELATEDcoord: 19..122
score: 9.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g20940Cucsa.077010Cucumber (Gy14) v1cgycpeB0128
Cp4.1LG01g20940CmaCh15G006190Cucurbita maxima (Rimu)cmacpeB318
Cp4.1LG01g20940CmaCh04G024290Cucurbita maxima (Rimu)cmacpeB721
Cp4.1LG01g20940CmoCh04G025460Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g20940CmoCh15G006230Cucurbita moschata (Rifu)cmocpeB280
Cp4.1LG01g20940Cla013851Watermelon (97103) v1cpewmB393
Cp4.1LG01g20940Csa6G338090Cucumber (Chinese Long) v2cpecuB463
Cp4.1LG01g20940MELO3C008400Melon (DHL92) v3.5.1cpemeB401
Cp4.1LG01g20940ClCG08G006520Watermelon (Charleston Gray)cpewcgB415
Cp4.1LG01g20940CSPI06G18020Wild cucumber (PI 183967)cpecpiB464
Cp4.1LG01g20940Lsi08G005290Bottle gourd (USVL1VR-Ls)cpelsiB382
Cp4.1LG01g20940MELO3C008400.2Melon (DHL92) v3.6.1cpemedB466
Cp4.1LG01g20940CsaV3_6G030900Cucumber (Chinese Long) v3cpecucB0572
Cp4.1LG01g20940Bhi04G001409Wax gourdcpewgoB0533
Cp4.1LG01g20940CsGy6G017500Cucumber (Gy14) v2cgybcpeB801
Cp4.1LG01g20940Carg01588Silver-seed gourdcarcpeB1158
Cp4.1LG01g20940Carg15778Silver-seed gourdcarcpeB0096
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG01g20940Cp4.1LG13g04090Cucurbita pepo (Zucchini)cpecpeB199
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g20940Cucumber (Chinese Long) v3cpecucB0584
Cp4.1LG01g20940Cucurbita pepo (Zucchini)cpecpeB404
Cp4.1LG01g20940Cucumber (Gy14) v1cgycpeB0136
Cp4.1LG01g20940Cucurbita moschata (Rifu)cmocpeB014
Cp4.1LG01g20940Cucumber (Chinese Long) v2cpecuB473
Cp4.1LG01g20940Bottle gourd (USVL1VR-Ls)cpelsiB338
Cp4.1LG01g20940Cucumber (Gy14) v2cgybcpeB943