Carg01588 (gene) Silver-seed gourd

Overview
NameCarg01588
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionDof zinc finger protein like
LocationCucurbita_argyrosperma_scaffold_004 : 1809824 .. 1810543 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCGACCACCACCAGCTCCCTCCTCCACCTCCGCCGCCGTTCGCCTCCCATCTCGAGCGGAAATGGAAGCCCCATCTCGAAACAGCTCCAAATTGCCCTCGTTGCGCCTCCGCCAATACCAAATTCTGTTATTACAACAACTACAGCCTCTCCCAACCTAGATACTTTTGTAAATCCTGTCGACGTTATTGGACCAAAGGCGGTTCCCTCCGTAACGTTCCTGTCGGCGGTGGCTGTCGTAAGAGTCGTCGTACTAGGTCCTCACGATCCTCAACTGTCTCACGTTCTACCAACCCCGACACTTCTACACAAATCACTGAATCCTCCTCTAATGGACCCGATATCGATCTTGCTGCCGTTTTCGCTAGATATTTGAACACCGCCCCACCGAGTACTGAGGCACACGCGTTGACCAGCTCGCCCGAATCCGTTGACCCTTTAGAGAATTGTGAAATCTTCTTTGAAGGGCTGTCGGATTTGTTAATTGATGAGGAAAATCAACCCCAAGAACAAAAACAGGGGATTATCGGAAATTACGAAAATACTCCGTTTGGGTTACACGCGGAATTGGGCGTTGAGGAAGAAGTATGGGCGTCGCAACAAATCCAAGAATTGGACTCTTTTTCTTGCAATTATAATGCGAATCAATTCTGTGAAGTGGGAGACAATTGGAGCTCATTCGACTTTGCAGCCGTAAATAATGTCGAATATTTCTAA

mRNA sequence

ATGTCCGACCACCACCAGCTCCCTCCTCCACCTCCGCCGCCGTTCGCCTCCCATCTCGAGCGGAAATGGAAGCCCCATCTCGAAACAGCTCCAAATTGCCCTCGTTGCGCCTCCGCCAATACCAAATTCTGTTATTACAACAACTACAGCCTCTCCCAACCTAGATACTTTTGTAAATCCTGTCGACGTTATTGGACCAAAGGCGGTTCCCTCCGTAACGTTCCTGTCGGCGGTGGCTGTCGTAAGAGTCGTCGTACTAGGTCCTCACGATCCTCAACTGTCTCACGTTCTACCAACCCCGACACTTCTACACAAATCACTGAATCCTCCTCTAATGGACCCGATATCGATCTTGCTGCCGTTTTCGCTAGATATTTGAACACCGCCCCACCGAGTACTGAGGCACACGCGTTGACCAGCTCGCCCGAATCCGTTGACCCTTTAGAGAATTGTGAAATCTTCTTTGAAGGGCTGTCGGATTTGTTAATTGATGAGGAAAATCAACCCCAAGAACAAAAACAGGGGATTATCGGAAATTACGAAAATACTCCGTTTGGGTTACACGCGGAATTGGGCGTTGAGGAAGAAGTATGGGCGTCGCAACAAATCCAAGAATTGGACTCTTTTTCTTGCAATTATAATGCGAATCAATTCTGTGAAGTGGGAGACAATTGGAGCTCATTCGACTTTGCAGCCGTAAATAATGTCGAATATTTCTAA

Coding sequence (CDS)

ATGTCCGACCACCACCAGCTCCCTCCTCCACCTCCGCCGCCGTTCGCCTCCCATCTCGAGCGGAAATGGAAGCCCCATCTCGAAACAGCTCCAAATTGCCCTCGTTGCGCCTCCGCCAATACCAAATTCTGTTATTACAACAACTACAGCCTCTCCCAACCTAGATACTTTTGTAAATCCTGTCGACGTTATTGGACCAAAGGCGGTTCCCTCCGTAACGTTCCTGTCGGCGGTGGCTGTCGTAAGAGTCGTCGTACTAGGTCCTCACGATCCTCAACTGTCTCACGTTCTACCAACCCCGACACTTCTACACAAATCACTGAATCCTCCTCTAATGGACCCGATATCGATCTTGCTGCCGTTTTCGCTAGATATTTGAACACCGCCCCACCGAGTACTGAGGCACACGCGTTGACCAGCTCGCCCGAATCCGTTGACCCTTTAGAGAATTGTGAAATCTTCTTTGAAGGGCTGTCGGATTTGTTAATTGATGAGGAAAATCAACCCCAAGAACAAAAACAGGGGATTATCGGAAATTACGAAAATACTCCGTTTGGGTTACACGCGGAATTGGGCGTTGAGGAAGAAGTATGGGCGTCGCAACAAATCCAAGAATTGGACTCTTTTTCTTGCAATTATAATGCGAATCAATTCTGTGAAGTGGGAGACAATTGGAGCTCATTCGACTTTGCAGCCGTAAATAATGTCGAATATTTCTAA

Protein sequence

MSDHHQLPPPPPPPFASHLERKWKPHLETAPNCPRCASANTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNVPVGGGCRKSRRTRSSRSSTVSRSTNPDTSTQITESSSNGPDIDLAAVFARYLNTAPPSTEAHALTSSPESVDPLENCEIFFEGLSDLLIDEENQPQEQKQGIIGNYENTPFGLHAELGVEEEVWASQQIQELDSFSCNYNANQFCEVGDNWSSFDFAAVNNVEYF
Homology
[Close]
BLAST of Carg01588 vs. NCBI nr
Match: XP_022939534.1 (dof zinc finger protein DOF1.2-like [Cucurbita moschata])

HSP 1 Score: 446.0 bits (1146), Expect = 7.8e-122
Identity = 235/239 (98.33%), Postives = 237/239 (99.16%), Query Frame = 0 

Query: 1   MSDHXXXXXXXXXXFASHLERKWKPHLETAPNCPRCASANTKFCYYNNYSLSQPRYFCKS 60
           MSD XXXXXXXXXXFASHLERKWKPHLETAPNCPRCASANTKFCYYNNYSLSQPRYFCKS
Sbjct: 6   MSDXXXXXXXXXXXFASHLERKWKPHLETAPNCPRCASANTKFCYYNNYSLSQPRYFCKS 65

Query: 61  CRRYWTKGGSLRNVPVGGGCRKSRRTRSXXXXXXXXXXNPDTSTQITESSSNGPDIDLAA 120
           CRRYWTKGGSLRNVPVGGGCRKSRRTRSXXXXXXXXXXNPDTSTQITESSSNGPDIDLAA
Sbjct: 66  CRRYWTKGGSLRNVPVGGGCRKSRRTRSXXXXXXXXXXNPDTSTQITESSSNGPDIDLAA 125

Query: 121 VFARYLNTAPPSTEAHALTSSPESVDPLENCEIFFEGLSDLLIDEENQPQEQKQGIIGNY 180
           VFARYLNTAPPSTEAHALTSSPESVDPLENCEIFFEGLSDLL +EENQPQEQKQGI+GNY
Sbjct: 126 VFARYLNTAPPSTEAHALTSSPESVDPLENCEIFFEGLSDLLTEEENQPQEQKQGIMGNY 185

Query: 181 ENTPFGLHAELGVEEEVWASQQIQELDSFSCNYNANQFCEVGDNWSSFDFAAVNNVEYF 240
           ENTPFGLHAELGVEEEVWASQQIQELDSFSCNYNANQFCEVGDNWSSFDFAAVNNVEYF
Sbjct: 186 ENTPFGLHAELGVEEEVWASQQIQELDSFSCNYNANQFCEVGDNWSSFDFAAVNNVEYF 244

[Close]
BLAST of Carg01588 vs. NCBI nr
Match: XP_022993920.1 (dof zinc finger protein DOF1.2-like [Cucurbita maxima])

HSP 1 Score: 439.1 bits (1128), Expect = 9.5e-120
Identity = 229/240 (95.42%), Postives = 233/240 (97.08%), Query Frame = 0 

Query: 1   MSD-HXXXXXXXXXXFASHLERKWKPHLETAPNCPRCASANTKFCYYNNYSLSQPRYFCK 60
           MSD H   XXXXXXXFASHLERKWKPHLETAPNCPRCASANTKFCYYNNYSLSQPRYFCK
Sbjct: 6   MSDHHQLPXXXXXXXFASHLERKWKPHLETAPNCPRCASANTKFCYYNNYSLSQPRYFCK 65

Query: 61  SCRRYWTKGGSLRNVPVGGGCRKSRRTRSXXXXXXXXXXNPDTSTQITESSSNGPDIDLA 120
           SCRRYWTKGGSLRNVPVGGGCRKSRRTRSXXXXXXXXXXNPDTSTQITESSSNGPDIDLA
Sbjct: 66  SCRRYWTKGGSLRNVPVGGGCRKSRRTRSXXXXXXXXXXNPDTSTQITESSSNGPDIDLA 125

Query: 121 AVFARYLNTAPPSTEAHALTSSPESVDPLENCEIFFEGLSDLLIDEENQPQEQKQGIIGN 180
           AVFARYLNT PPSTE H LTSSPESVDPLENCEIFFEGL+DLLI+EENQPQEQKQGI+GN
Sbjct: 126 AVFARYLNTTPPSTEHHTLTSSPESVDPLENCEIFFEGLTDLLIEEENQPQEQKQGIMGN 185

Query: 181 YENTPFGLHAELGVEEEVWASQQIQELDSFSCNYNANQFCEVGDNWSSFDFAAVNNVEYF 240
           YENTPFGLHAELGVEEE+WASQQIQELDSFSCNYNANQFCEVGDNWSSFDFAAVNNVEYF
Sbjct: 186 YENTPFGLHAELGVEEELWASQQIQELDSFSCNYNANQFCEVGDNWSSFDFAAVNNVEYF 245

[Close]
BLAST of Carg01588 vs. NCBI nr
Match: XP_023522776.1 (dof zinc finger protein DOF1.2-like [Cucurbita pepo subsp. pepo] >XP_023551553.1 dof zinc finger protein DOF1.2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 438.7 bits (1127), Expect = 1.2e-119
Identity = 225/239 (94.14%), Postives = 228/239 (95.40%), Query Frame = 0 

Query: 1   MSDHXXXXXXXXXXFASHLERKWKPHLETAPNCPRCASANTKFCYYNNYSLSQPRYFCKS 60
           MSD XXXXXXXXXXFASHLERKWKPHLETAPNCPRCASANTKFCYYNNYSLSQPRYFCKS
Sbjct: 6   MSDXXXXXXXXXXXFASHLERKWKPHLETAPNCPRCASANTKFCYYNNYSLSQPRYFCKS 65

Query: 61  CRRYWTKGGSLRNVPVGGGCRKSRRTRSXXXXXXXXXXNPDTSTQITESSSNGPDIDLAA 120
           CRRYWTKGGSLRNVPVGGGCRKSRRTRS XXX      NP+T TQITESSSNGPDIDLAA
Sbjct: 66  CRRYWTKGGSLRNVPVGGGCRKSRRTRSSXXXTVSRSTNPNTCTQITESSSNGPDIDLAA 125

Query: 121 VFARYLNTAPPSTEAHALTSSPESVDPLENCEIFFEGLSDLLIDEENQPQEQKQGIIGNY 180
           VFARYLNTAPPSTEAHALTSSPESVDPLENCEI FEGLSDLLI+EENQ QEQKQGI+GNY
Sbjct: 126 VFARYLNTAPPSTEAHALTSSPESVDPLENCEILFEGLSDLLIEEENQAQEQKQGIMGNY 185

Query: 181 ENTPFGLHAELGVEEEVWASQQIQELDSFSCNYNANQFCEVGDNWSSFDFAAVNNVEYF 240
           ENTPFGLHAELGVEEEVWASQQIQELDSFSCNYNANQFCEVGDNWSSFDFAAVNNVEYF
Sbjct: 186 ENTPFGLHAELGVEEEVWASQQIQELDSFSCNYNANQFCEVGDNWSSFDFAAVNNVEYF 244

[Close]
BLAST of Carg01588 vs. NCBI nr
Match: XP_004148826.2 (PREDICTED: dof zinc finger protein DOF1.2 [Cucumis sativus] >KGN47477.1 hypothetical protein Csa_6G338090 [Cucumis sativus])

HSP 1 Score: 314.3 bits (804), Expect = 3.5e-82
Identity = 181/249 (72.69%), Postives = 195/249 (78.31%), Query Frame = 0 

Query: 1   MSDHXXXXXXXXXXFASHLERKWKPHLETAPNCPRCASANTKFCYYNNYSLSQPRYFCKS 60
           MSDH XXXXXXXXXF SHL+RKWKPHLE APNCPRCAS NTKFCYYNNYSLSQPRYFCKS
Sbjct: 6   MSDH-XXXXXXXXXFPSHLQRKWKPHLEAAPNCPRCASTNTKFCYYNNYSLSQPRYFCKS 65

Query: 61  CRRYWTKGGSLRNVPVGGGCRKSRRTRSXXXXXXXXXXNPDTSTQITESSSNGPDIDLAA 120
           CRRYWTKGGSLRNVPVGGGCRKS     XXXXXXXXXX                 IDLAA
Sbjct: 66  CRRYWTKGGSLRNVPVGGGCRKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDLAA 125

Query: 121 VFARYLNTAPPSTEAHALTSSPESVDPLENCEIFFEGLSDLLIDEENQPQEQKQGIIGNY 180
           VFAR+LN+ P       LTSSPESVDPLE  EIF EGLSD+L+D+ENQ +E+KQGI G+Y
Sbjct: 126 VFARFLNSEP-----QTLTSSPESVDPLEISEIFLEGLSDMLLDDENQREEEKQGIPGSY 185

Query: 181 ENTPFGLHAELGVEEEVWAS----QQIQELDSFSCNYNAN------QFCEVGDNWSSFDF 240
           EN  FGL  ELG++EEVWAS    +Q+QELDSFSCNY AN      QFC+VGDNWSSFDF
Sbjct: 186 ENVSFGLETELGIDEEVWASPEMQEQVQELDSFSCNYYANDLRVSDQFCQVGDNWSSFDF 245

[Close]
BLAST of Carg01588 vs. NCBI nr
Match: XP_022989804.1 (dof zinc finger protein DOF1.2-like [Cucurbita maxima])

HSP 1 Score: 261.5 bits (667), Expect = 2.7e-66
Identity = 140/209 (66.99%), Postives = 156/209 (74.64%), Query Frame = 0 

Query: 15  FASHLERKWKPHLETAPNCPRCASANTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNV 74
           FA+HLERKWKPHLE APNCPRCASANTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNV
Sbjct: 18  FAAHLERKWKPHLEKAPNCPRCASANTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNV 77

Query: 75  PVGGGCRKSRRTRSXXXXXXXXXXNPDTSTQITESSSNGPDIDLAAVFARYLNTAPPSTE 134
           PVGGGCRK+RR++S              ST+ITE SSNG DIDLAAVFA++LNT PPST+
Sbjct: 78  PVGGGCRKTRRSKSSTSSTILPNV---ISTKITEPSSNGSDIDLAAVFAKFLNT-PPSTK 137

Query: 135 AHALTSSPESVDPLENC-----EIFFEGLSDLLIDEENQPQEQKQGIIGNYENTPFGLHA 194
               TSSPES DP +N      EIFFE LSDL     NQP+++   I  NYEN PFGL  
Sbjct: 138 PRVSTSSPESTDPSDNLTAKNPEIFFEELSDLF----NQPEDR---ITKNYENFPFGLQP 197

Query: 195 ELGVEEEVWASQ---QIQELDSFSCNYNA 216
           EL + +E+W SQ   Q+QE  SF CNYNA
Sbjct: 198 ELTI-DELWPSQPIEQLQEWKSFLCNYNA 214

[Close]
BLAST of Carg01588 vs. TAIR10
Match: AT1G21340.1 (Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 147.5 bits (371), Expect = 1.0e-35
Identity = 99/240 (41.25%), Postives = 123/240 (51.25%), Query Frame = 0 

Query: 19  LERKWKPHLE----TAPNCPRCASANTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNV 78
           +  KWK   E    TAP CPRCAS+NTKFCYYNNYSLSQPRYFCK CRRYWTKGGSLRN+
Sbjct: 22  IPEKWKLSYEQEAITAPACPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNI 81

Query: 79  PVGGGCRKSRRTRSXXXXXXXXXXN-PD---TSTQITESSSNGPDIDLAAVFARYLNTAP 138
           PVGGGCRK  R+R           N PD         +SS  G DIDLAAVFA+Y+    
Sbjct: 82  PVGGGCRKRSRSRQNSHKRFGRNENRPDGLINQDDGFQSSPPGSDIDLAAVFAQYVTDRS 141

Query: 139 PS---------------TEAHALTSSPESVDPLENCEIFFEGLSDLLIDEENQPQEQKQG 198
           PS               T  HAL S    +    + ++ F G  + L  +  + QE    
Sbjct: 142 PSSTDNTTGSDQDSPITTTTHALESLSWDICQETDVDLGFYGEFNNLTQKTKEDQE---- 201

Query: 199 IIGNYENTPFGLHAELGVEEEVWASQQIQELDSFSCNYNANQ------FCEVGDNWSSFD 230
           + G +         E+   + +   ++IQE+   S +   +Q      F   GDNWSS D
Sbjct: 202 VFGQFLQED---REEIFEFQGLLDDKEIQEILECSFSEEPDQLVSQGSFMINGDNWSSTD 254

[Close]
BLAST of Carg01588 vs. TAIR10
Match: AT3G52440.1 (Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 140.6 bits (353), Expect = 1.3e-33
Identity = 75/150 (50.00%), Postives = 91/150 (60.67%), Query Frame = 0 

Query: 23  WKP----HLETAPNCPRCASANTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNVPVGG 82
           W+P    + E  P+CPRC S+NTKFCYYNNYSL+QPRYFCK CRRYWTKGGSLRNVPVGG
Sbjct: 13  WRPNANANAEITPSCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGG 72

Query: 83  GCRKSRRTRSXXXXXXXXXXNPDTSTQITESSSN----GPDIDLAAVFARYLNTAPPSTE 142
           GCRKSRR +S            +T T +T +S N     P IDLA V+A +LN  P  + 
Sbjct: 73  GCRKSRRPKS--------SSGNNTKTSLTANSGNPGGGSPSIDLALVYANFLNPKPDESI 132

Query: 143 AHALTSSPESVDPLENCEIFFEGLSDLLID 165
                         ENC++     +D L+D
Sbjct: 133 LQ------------ENCDL---ATTDFLVD 139

[Close]
BLAST of Carg01588 vs. TAIR10
Match: AT5G60200.1 (TARGET OF MONOPTEROS 6)

HSP 1 Score: 117.9 bits (294), Expect = 8.8e-27
Identity = 61/114 (53.51%), Postives = 71/114 (62.28%), Query Frame = 0 

Query: 28  ETAPNCPRCASANTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNVPVGGGCRKSRRTR 87
           E A  CPRC S NTKFCYYNNYSL+QPRYFCKSCRRYWTKGG+LRN+PVGGGCRK++R+ 
Sbjct: 52  ELALRCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNIPVGGGCRKNKRST 111

Query: 88  SXXXXXXXXXXNPDT------STQITESSSNGPDIDLAAVFARYLNTAPPSTEA 136
           S           P +      S       SN   IDL+  FA  LN   P + +
Sbjct: 112 SSAARSLRTTPEPASHDGKVFSAAGFNGYSNNEHIDLSLAFA-LLNKQHPGSSS 164

[Close]
BLAST of Carg01588 vs. TAIR10
Match: AT4G00940.1 (Dof-type zinc finger DNA-binding family protein)

HSP 1 Score: 112.5 bits (280), Expect = 3.7e-25
Identity = 54/101 (53.47%), Postives = 69/101 (68.32%), Query Frame = 0 

Query: 32  NCPRCASANTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNVPVGGGCRKSRRTRSXXX 91
           NCPRC S+NTKFCYYNNYSL+QPRY CKSCRRYWT+GGSLRNVPVGGG RK+++      
Sbjct: 69  NCPRCNSSNTKFCYYNNYSLAQPRYLCKSCRRYWTEGGSLRNVPVGGGSRKNKKL----- 128

Query: 92  XXXXXXXNPDTSTQITESSSNGPDIDLAAVFARYLNTAPPS 133
                   P  ++  + S+ N PD++   VF    +++ PS
Sbjct: 129 --------PFPNSSTSSSTKNLPDLNPPFVFTSSASSSNPS 156

[Close]
BLAST of Carg01588 vs. TAIR10
Match: AT3G55370.3 (OBF-binding protein 3)

HSP 1 Score: 111.3 bits (277), Expect = 8.3e-25
Identity = 47/64 (73.44%), Postives = 57/64 (89.06%), Query Frame = 0 

Query: 25  PHLETAPNCPRCASANTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNVPVGGGCRKSR 84
           P  E A NCPRC S NTKFCY+NNYSL+QPR+FCK+CRRYWT+GGSLRNVPVGGG R+++
Sbjct: 115 PLPEAALNCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGSLRNVPVGGGFRRNK 174

Query: 85  RTRS 89
           R++S
Sbjct: 175 RSKS 178

[Close]
BLAST of Carg01588 vs. Swiss-Prot
Match: sp|P68349|DOF12_ARATH (Dof zinc finger protein DOF1.2 OS=Arabidopsis thaliana OX=3702 GN=DOF1.2 PE=2 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.9e-34
Identity = 99/240 (41.25%), Postives = 123/240 (51.25%), Query Frame = 0 

Query: 19  LERKWKPHLE----TAPNCPRCASANTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNV 78
           +  KWK   E    TAP CPRCAS+NTKFCYYNNYSLSQPRYFCK CRRYWTKGGSLRN+
Sbjct: 22  IPEKWKLSYEQEAITAPACPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNI 81

Query: 79  PVGGGCRKSRRTRSXXXXXXXXXXN-PD---TSTQITESSSNGPDIDLAAVFARYLNTAP 138
           PVGGGCRK  R+R           N PD         +SS  G DIDLAAVFA+Y+    
Sbjct: 82  PVGGGCRKRSRSRQNSHKRFGRNENRPDGLINQDDGFQSSPPGSDIDLAAVFAQYVTDRS 141

Query: 139 PS---------------TEAHALTSSPESVDPLENCEIFFEGLSDLLIDEENQPQEQKQG 198
           PS               T  HAL S    +    + ++ F G  + L  +  + QE    
Sbjct: 142 PSSTDNTTGSDQDSPITTTTHALESLSWDICQETDVDLGFYGEFNNLTQKTKEDQE---- 201

Query: 199 IIGNYENTPFGLHAELGVEEEVWASQQIQELDSFSCNYNANQ------FCEVGDNWSSFD 230
           + G +         E+   + +   ++IQE+   S +   +Q      F   GDNWSS D
Sbjct: 202 VFGQFLQED---REEIFEFQGLLDDKEIQEILECSFSEEPDQLVSQGSFMINGDNWSSTD 254

[Close]
BLAST of Carg01588 vs. Swiss-Prot
Match: sp|Q9SVC5|DOF35_ARATH (Dof zinc finger protein DOF3.5 OS=Arabidopsis thaliana OX=3702 GN=DOF3.5 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.3e-32
Identity = 75/150 (50.00%), Postives = 91/150 (60.67%), Query Frame = 0 

Query: 23  WKP----HLETAPNCPRCASANTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNVPVGG 82
           W+P    + E  P+CPRC S+NTKFCYYNNYSL+QPRYFCK CRRYWTKGGSLRNVPVGG
Sbjct: 13  WRPNANANAEITPSCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGG 72

Query: 83  GCRKSRRTRSXXXXXXXXXXNPDTSTQITESSSN----GPDIDLAAVFARYLNTAPPSTE 142
           GCRKSRR +S            +T T +T +S N     P IDLA V+A +LN  P  + 
Sbjct: 73  GCRKSRRPKS--------SSGNNTKTSLTANSGNPGGGSPSIDLALVYANFLNPKPDESI 132

Query: 143 AHALTSSPESVDPLENCEIFFEGLSDLLID 165
                         ENC++     +D L+D
Sbjct: 133 LQ------------ENCDL---ATTDFLVD 139

[Close]
BLAST of Carg01588 vs. Swiss-Prot
Match: sp|Q84TE9|DOF53_ARATH (Dof zinc finger protein DOF5.3 OS=Arabidopsis thaliana OX=3702 GN=DOF5.3 PE=2 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.6e-25
Identity = 61/114 (53.51%), Postives = 71/114 (62.28%), Query Frame = 0 

Query: 28  ETAPNCPRCASANTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNVPVGGGCRKSRRTR 87
           E A  CPRC S NTKFCYYNNYSL+QPRYFCKSCRRYWTKGG+LRN+PVGGGCRK++R+ 
Sbjct: 52  ELALRCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNIPVGGGCRKNKRST 111

Query: 88  SXXXXXXXXXXNPDT------STQITESSSNGPDIDLAAVFARYLNTAPPSTEA 136
           S           P +      S       SN   IDL+  FA  LN   P + +
Sbjct: 112 SSAARSLRTTPEPASHDGKVFSAAGFNGYSNNEHIDLSLAFA-LLNKQHPGSSS 164

[Close]
BLAST of Carg01588 vs. Swiss-Prot
Match: sp|O24463|PBF_MAIZE (Dof zinc finger protein PBF OS=Zea mays OX=4577 GN=PBF PE=1 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.5e-25
Identity = 49/65 (75.38%), Postives = 56/65 (86.15%), Query Frame = 0 

Query: 20  ERKWKPHLETAPNCPRCASANTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNVPVGGG 79
           ERK +P L  A  CPRC S NTKFCYYNNYS+SQPRYFCK+CRRYWT GG+LRNVP+GGG
Sbjct: 49  ERKPRPQLPEALKCPRCDSNNTKFCYYNNYSMSQPRYFCKACRRYWTHGGTLRNVPIGGG 108

Query: 80  CRKSR 85
           CRK++
Sbjct: 109 CRKNK 113

[Close]
BLAST of Carg01588 vs. Swiss-Prot
Match: sp|Q9M161|DOF41_ARATH (Dof zinc finger protein DOF4.1 OS=Arabidopsis thaliana OX=3702 GN=DOF4.1 PE=2 SV=2)

HSP 1 Score: 112.5 bits (280), Expect = 6.7e-24
Identity = 54/101 (53.47%), Postives = 69/101 (68.32%), Query Frame = 0 

Query: 32  NCPRCASANTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNVPVGGGCRKSRRTRSXXX 91
           NCPRC S+NTKFCYYNNYSL+QPRY CKSCRRYWT+GGSLRNVPVGGG RK+++      
Sbjct: 69  NCPRCNSSNTKFCYYNNYSLAQPRYLCKSCRRYWTEGGSLRNVPVGGGSRKNKKL----- 128

Query: 92  XXXXXXXNPDTSTQITESSSNGPDIDLAAVFARYLNTAPPS 133
                   P  ++  + S+ N PD++   VF    +++ PS
Sbjct: 129 --------PFPNSSTSSSTKNLPDLNPPFVFTSSASSSNPS 156

[Close]
BLAST of Carg01588 vs. TrEMBL
Match: tr|A0A0A0KGG2|A0A0A0KGG2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G338090 PE=4 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 2.3e-82
Identity = 181/249 (72.69%), Postives = 195/249 (78.31%), Query Frame = 0 

Query: 1   MSDHXXXXXXXXXXFASHLERKWKPHLETAPNCPRCASANTKFCYYNNYSLSQPRYFCKS 60
           MSDH XXXXXXXXXF SHL+RKWKPHLE APNCPRCAS NTKFCYYNNYSLSQPRYFCKS
Sbjct: 6   MSDH-XXXXXXXXXFPSHLQRKWKPHLEAAPNCPRCASTNTKFCYYNNYSLSQPRYFCKS 65

Query: 61  CRRYWTKGGSLRNVPVGGGCRKSRRTRSXXXXXXXXXXNPDTSTQITESSSNGPDIDLAA 120
           CRRYWTKGGSLRNVPVGGGCRKS     XXXXXXXXXX                 IDLAA
Sbjct: 66  CRRYWTKGGSLRNVPVGGGCRKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDLAA 125

Query: 121 VFARYLNTAPPSTEAHALTSSPESVDPLENCEIFFEGLSDLLIDEENQPQEQKQGIIGNY 180
           VFAR+LN+ P       LTSSPESVDPLE  EIF EGLSD+L+D+ENQ +E+KQGI G+Y
Sbjct: 126 VFARFLNSEP-----QTLTSSPESVDPLEISEIFLEGLSDMLLDDENQREEEKQGIPGSY 185

Query: 181 ENTPFGLHAELGVEEEVWAS----QQIQELDSFSCNYNAN------QFCEVGDNWSSFDF 240
           EN  FGL  ELG++EEVWAS    +Q+QELDSFSCNY AN      QFC+VGDNWSSFDF
Sbjct: 186 ENVSFGLETELGIDEEVWASPEMQEQVQELDSFSCNYYANDLRVSDQFCQVGDNWSSFDF 245

[Close]
BLAST of Carg01588 vs. TrEMBL
Match: tr|A0A067L3I5|A0A067L3I5_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_25217 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 3.7e-43
Identity = 104/211 (49.29%), Postives = 132/211 (62.56%), Query Frame = 0 

Query: 19  LERKWKPHLETAPNCPRCASANTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNVPVGG 78
           +ERKWK H+E APNCPRCAS NTKFCYYNNYSLSQPRYFCK+CRRYWTKGGSLRNVPVGG
Sbjct: 19  MERKWKSHVELAPNCPRCASTNTKFCYYNNYSLSQPRYFCKACRRYWTKGGSLRNVPVGG 78

Query: 79  GCRKSRRTRSXXXXXXXXXXNPDT-STQITESS----------SNGPDIDLAAVFARYLN 138
           GCRK+RR ++          + +  S  +T SS          SNG DIDLA VFA++LN
Sbjct: 79  GCRKTRRAKAVRASQTDRVVSLNNYSRDLTSSSVDSFTQENQTSNGSDIDLAVVFAKFLN 138

Query: 139 ---TAPPSTEAHALTSSPESV-DPLENCEIFFEGLSDLLIDEENQPQEQK--QGIIGNYE 198
              +  P+  +++LT   E V D ++  + F EGL  +L+ E+ Q + Q   Q  I + E
Sbjct: 139 QDSSVNPNEFSNSLTVEKEKVSDLIQESDDFLEGLPPVLLVEDGQQENQDSIQEFIESPE 198

Query: 199 NTPFGLHAELG----VEEEVWASQQIQELDS 209
              FGL   LG    V E +W+ Q+   L +
Sbjct: 199 MDAFGLQTFLGDQEMVHEALWSDQEAATLSN 229

[Close]
BLAST of Carg01588 vs. TrEMBL
Match: tr|A0A2P6PSB3|A0A2P6PSB3_ROSCH (Putative transcription factor C2C2-Dof family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0276721 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 1.1e-39
Identity = 121/272 (44.49%), Postives = 148/272 (54.41%), Query Frame = 0 

Query: 23  WKPHLETAPNCPRCASANTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNVPVGGGCRK 82
           WKPH+E APNCPRCAS+NTKFCYYNNYSLSQPRYFCK CRRYWTKGGSLRNVPVGGGCRK
Sbjct: 26  WKPHVEIAPNCPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRK 85

Query: 83  SRRTRS------XXXXXXXXXXNPDTST-------QITESSSNGPDIDLAAVFARYLN-- 142
           +RR RS                N  + +       Q  E  +NG DIDLAAVFA++LN  
Sbjct: 86  NRRGRSVRLSQADRVSLSYYRHNSSSGSGGDLSEQQSMEGGANGSDIDLAAVFAKFLNQD 145

Query: 143 -------------TAPPST-EAHAL------TSSPESVDPLENCEIFFEGLSDLLIDEEN 202
                        + P    EA+AL      +S+PE  D LE+ E+  EGL  +L D+++
Sbjct: 146 SSNEHDPNLVGSESIPDDVHEANALSDHSQISSNPEE-DLLESVEL-LEGL--VLPDQDH 205

Query: 203 Q---PQEQKQGIIGNYEN-----TPFGLHAELGVEEEVW-----------ASQQIQELD- 234
           Q    ++  Q I+GN  +       FGL   LG E+  W            S   QELD 
Sbjct: 206 QQLHEEDNIQNIMGNQHHHDLSIHEFGLQGLLGDEDVFWTDTTASLTSSTTSFTWQELDN 265

[Close]
BLAST of Carg01588 vs. TrEMBL
Match: tr|A0A1D6WJM1|A0A1D6WJM1_FRAAN (ZnF-Dof-type transcription factor OS=Fragaria ananassa OX=3747 GN=Dof1 PE=2 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 6.0e-38
Identity = 116/270 (42.96%), Postives = 147/270 (54.44%), Query Frame = 0 

Query: 23  WKPHLETAPNCPRCASANTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNVPVGGGCRK 82
           WKPH+E APNCPRCAS+NTKFCYYNNYSLSQPRYFCK CRRYWTKGGSLRNVPVGGGCRK
Sbjct: 28  WKPHVEIAPNCPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRK 87

Query: 83  SRRTR------------SXXXXXXXXXXNPDTSTQITESSSNGPDIDLAAVFARYLN--- 142
           +RR+R            S   XXXXXXX  D S Q ++  +NG DID+AAVFA +LN   
Sbjct: 88  NRRSRSARLSQVERISMSYYRXXXXXXXXDDLSEQHSKERANGSDIDMAAVFANFLNQNS 147

Query: 143 ------------TAPPST-EAHALTS-SPESVDPLENCEIFFEGLSDLLIDEENQPQEQK 202
                       + P    +A+AL+  S  S +P E+     E L  L++ + +  Q  +
Sbjct: 148 SNGHDPNLVGSESIPDDVHDANALSDHSQNSSNPAEDLLESVELLQGLVLPDYDHQQSHE 207

Query: 203 Q----GIIGNYEN------TPFGLHAELGVEEEVWA-----------SQQIQELDS---- 234
           +     I+GN++         FGL   L  E+  W+           S   QELD+    
Sbjct: 208 EDNIHNIMGNHQYHQDLSIHEFGLQGLLDDEDVFWSDSTASLTSNTTSFNWQELDNSFPS 267

[Close]
BLAST of Carg01588 vs. TrEMBL
Match: tr|A0A2H5NIU1|A0A2H5NIU1_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_047440 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 7.9e-38
Identity = 108/258 (41.86%), Postives = 140/258 (54.26%), Query Frame = 0 

Query: 16  ASHLERKWKPHLETAPNCPRCASANTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNVP 75
           A+ +E+KWKP +ETAP+CPRCAS NTKFCYYNNYSLSQPRYFCK CRRYWTKGGSLRNVP
Sbjct: 21  AAAMEKKWKPDVETAPSCPRCASPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVP 80

Query: 76  VGGGCRKSRRTRSXXXXXXXXXXNP------DTSTQITESSSNGPDIDLAAVFARYLNTA 135
           +GGGCRK+RR +S           P      D +     + + G DIDLA VFA++LN +
Sbjct: 81  MGGGCRKNRRVKSSRRKSPFNNDRPKASCSSDHTDDAVSTPNGGSDIDLAVVFAKFLNES 140

Query: 136 PPSTE---AHALTSSPESVDPLENCEIF----FEGLSDLLIDEE-----NQPQEQK---- 195
             S E   + A TS+  + D +   + F      G  DL +  E      Q QE++    
Sbjct: 141 SSSQETDLSAAKTSNSSTPDNVVQNDDFNVHNVMGNGDLNMLGEFPQVFGQLQEEEDRRV 200

Query: 196 QGIIGNYENTPFGLHAELG---VEEEV--WASQ----------------QIQELDSFSCN 230
           Q  + +      GL A LG   V+ +V  W+ Q                Q+Q+ DSF  +
Sbjct: 201 QDFLEDDMVNAHGLQALLGDEIVDHQVALWSDQAETETLPNFTWQRAMFQLQDFDSFPAD 260

The following BLAST results are available for this feature:
BLAST of Carg01588 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022939534.17.8e-12298.33dof zinc finger protein DOF1.2-like [Cucurbita moschata][more]
XP_022993920.19.5e-12095.42dof zinc finger protein DOF1.2-like [Cucurbita maxima][more]
XP_023522776.11.2e-11994.14dof zinc finger protein DOF1.2-like [Cucurbita pepo subsp. pepo] >XP_023551553.1... [more]
XP_004148826.23.5e-8272.69PREDICTED: dof zinc finger protein DOF1.2 [Cucumis sativus] >KGN47477.1 hypothet... [more]
XP_022989804.12.7e-6666.99dof zinc finger protein DOF1.2-like [Cucurbita maxima][more]
BLAST of Carg01588 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G21340.11.0e-3541.25Dof-type zinc finger DNA-binding family protein[more]
AT3G52440.11.3e-3350.00Dof-type zinc finger DNA-binding family protein[more]
AT5G60200.18.8e-2753.51TARGET OF MONOPTEROS 6[more]
AT4G00940.13.7e-2553.47Dof-type zinc finger DNA-binding family protein[more]
AT3G55370.38.3e-2573.44OBF-binding protein 3[more]
BLAST of Carg01588 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P68349|DOF12_ARATH1.9e-3441.25Dof zinc finger protein DOF1.2 OS=Arabidopsis thaliana OX=3702 GN=DOF1.2 PE=2 SV... [more]
sp|Q9SVC5|DOF35_ARATH2.3e-3250.00Dof zinc finger protein DOF3.5 OS=Arabidopsis thaliana OX=3702 GN=DOF3.5 PE=3 SV... [more]
sp|Q84TE9|DOF53_ARATH1.6e-2553.51Dof zinc finger protein DOF5.3 OS=Arabidopsis thaliana OX=3702 GN=DOF5.3 PE=2 SV... [more]
sp|O24463|PBF_MAIZE3.5e-2575.38Dof zinc finger protein PBF OS=Zea mays OX=4577 GN=PBF PE=1 SV=1[more]
sp|Q9M161|DOF41_ARATH6.7e-2453.47Dof zinc finger protein DOF4.1 OS=Arabidopsis thaliana OX=3702 GN=DOF4.1 PE=2 SV... [more]
BLAST of Carg01588 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KGG2|A0A0A0KGG2_CUCSA2.3e-8272.69Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G338090 PE=4 SV=1[more]
tr|A0A067L3I5|A0A067L3I5_JATCU3.7e-4349.29Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_25217 PE=4 SV=1[more]
tr|A0A2P6PSB3|A0A2P6PSB3_ROSCH1.1e-3944.49Putative transcription factor C2C2-Dof family OS=Rosa chinensis OX=74649 GN=Rchi... [more]
tr|A0A1D6WJM1|A0A1D6WJM1_FRAAN6.0e-3842.96ZnF-Dof-type transcription factor OS=Fragaria ananassa OX=3747 GN=Dof1 PE=2 SV=1[more]
tr|A0A2H5NIU1|A0A2H5NIU1_CITUN7.9e-3841.86Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_047440 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR003851Znf_Dof
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg01588-RACarg01588-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003851Zinc finger, Dof-typePFAMPF02701zf-Dofcoord: 30..85
e-value: 2.8E-32
score: 110.6
IPR003851Zinc finger, Dof-typePROSITEPS01361ZF_DOF_1coord: 33..69
IPR003851Zinc finger, Dof-typePRODOMPD007478coord: 19..82
e-value: 3.0E-26
score: 294.0
IPR003851Zinc finger, Dof-typePROSITEPS50884ZF_DOF_2coord: 31..85
score: 28.63
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 90..112
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 75..112
NoneNo IPR availablePANTHERPTHR31992FAMILY NOT NAMEDcoord: 20..141
NoneNo IPR availablePANTHERPTHR31992:SF73DOF ZINC FINGER PROTEIN DOF3.5coord: 20..141

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg01588Cla013851Watermelon (97103) v1carwmB0824
Carg01588Csa6G338090Cucumber (Chinese Long) v2carcuB0852
Carg01588MELO3C008400Melon (DHL92) v3.5.1carmeB0824
Carg01588ClCG08G006520Watermelon (Charleston Gray)carwcgB0803
Carg01588CSPI06G18020Wild cucumber (PI 183967)carcpiB0872
Carg01588Cucsa.077010Cucumber (Gy14) v1carcgyB0944
Carg01588CmaCh04G024290Cucurbita maxima (Rimu)carcmaB1150
Carg01588CmaCh15G006190Cucurbita maxima (Rimu)carcmaB1148
Carg01588CmoCh04G025460Cucurbita moschata (Rifu)carcmoB1121
Carg01588CmoCh15G006230Cucurbita moschata (Rifu)carcmoB1118
Carg01588Lsi08G005290Bottle gourd (USVL1VR-Ls)carlsiB758
Carg01588Cp4.1LG13g04090Cucurbita pepo (Zucchini)carcpeB1157
Carg01588Cp4.1LG01g20940Cucurbita pepo (Zucchini)carcpeB1158
Carg01588CsGy6G017500Cucumber (Gy14) v2carcgybB0826
Carg01588MELO3C008400.2Melon (DHL92) v3.6.1carmedB0835
Carg01588CsaV3_6G030900Cucumber (Chinese Long) v3carcucB0876
Carg01588Cla97C08G149340Watermelon (97103) v2carwmbB0862
Carg01588Bhi04G001409Wax gourdcarwgoB0967
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg01588Carg15778Silver-seed gourdcarcarB076
The following block(s) are covering this gene:
GeneOrganismBlock
Carg01588Watermelon (97103) v2carwmbB0866
Carg01588Cucumber (Gy14) v2carcgybB0827
Carg01588Cucumber (Gy14) v1carcgyB0945
Carg01588Cucurbita moschata (Rifu)carcmoB1116
Carg01588Cucurbita moschata (Rifu)carcmoB1120
Carg01588Cucurbita pepo (Zucchini)carcpeB1161
Carg01588Cucumber (Chinese Long) v2carcuB0853
Carg01588Cucumber (Chinese Long) v3carcucB0877
Carg01588Bottle gourd (USVL1VR-Ls)carlsiB756
Carg01588Watermelon (Charleston Gray)carwcgB0798
Carg01588Watermelon (97103) v1carwmB0823