CsGy1G009800 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G009800
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	protein TAPETUM DETERMINANT 1
Location	Chr1 : 6078409 .. 6080176 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAAAGAACTGTCTACTACTACTACTACTACTACTACTCGGCGTGTATCGGTGATTTTCGCTTTGGTTTTATTCATCTTCTTTTTCGTATCTGCTATTCTTACAGGTCTGTATCATCTCTCGCTCTCCGTTCTTCGTTTTGTTTTCAATTTGTTTTTACTGTGTGTTTTGATTTGTTATACTTTTACGTCGCCTCTCTCTCTCTCTCTCTCTCTTTCTCTGTGGGTTTACCTTTTGTTTTGTCTTCTTCTTCCTGTATATTTTATTTGTTCCTCAATCATTGTTCTCTCCTTTGTCTTTTTCTGCTTCGTATAGAAACAAAGATATTATTCTTCTTCTACTACTTTTTTTCACATCATTTTCTTCCTTACATGATTGCAGATCCGAATATTATGGATTCCGGTCCACCAAGTTTTCTTCCGTTGGATTTGAATACCACAACAGTTGCTCCTCATCGGAAGCTTCTTCTCACTAGTAAGTTTACGAAAATCTGATTTAATCGCGTATTCATAAATGTTATACCAGCAGATTCGTTATTCGGAGGAATCGTTATTCTTTTCTGAGTTTGTCGTTGGTTTTTGTTTTAAATGTCTGTTTGATTTTGGAATTATGATCTTGGGGATGAGGGGAGGGATTGAAAGATTGGGTACTCAATTGCATATATAGTTGATTTGTTGTCAGAATTGCACGCCCATCCATTCTTAGTAATGAAGCTAAGGCGCACCTTTTTCTATGTAGCTTTCAACTCCTTCTTTCTGTTCTTTAACCTATATGGCCTTTCTGTAGCTGTTTTTGGAGAAATCTTCTTTATTTGATCCTATATACCCACCAGCATTTCTTCCTTTTTCTGTCCACAATTCATTGATTACATAAAAGCAACCTTTGGCCCGAAAGCGTGGAGCATTATAATGCCTTTTTCAGTTTTAGCTTTTGAGCTTCTAATTGAATTCATTGCTTTGACAAAAAAGCTCTACCAGTGTGTGTGTATTAAATTATATCAAACGATTAGCTAATGCGTGGACTCTCTTTAGTGGGATTGTTGAGGGTACAGTTTTATTAGTTTTAAACTTTCATATGATTTTTTTTTTAATTTTAAATTTTGTCATGCCTAACCAAATGGATTGAATTTAGATAATGGTGCCTTGGGATTTTTCTTTTTCATACTCTCTTTATCTTTACCTTCGCCTTTGAATTTGCTTTATCCTTTATAATTCATTATTAATGCTTTGAACACAACTTTTATGACTTTCAGAAAGTGTAGTTTGTGTGTCTGTAGTTGTTTTTCCATTGGGTGGGTCGATATTTATTTATAAGAGTAATGTTTGCACGTGGGTGGTGCCTTCAACAATGCCATAATATACGATGCCAACAAATGACGTCGACCTGTTTGCTTCTTTATTTGAATATGTGCTTTTTAGGGGAAGCAACAATTGAGGAACCAACCAGAATTTGGGGTGAAAAGTGTACAAAATCAGACATTGTGATTAACCAAGGCCCCACTGCTCCACTTCCAACTGGTATCCCCACCTACACCGTGGAAGTGGTGAACGCTTGTGTCACTGGATGTGAGATTTATGGTATTCATTTCAAATGCGGTTGGTTTAGCTCCGCTCACCTCATCAATCCTAGAGTCTTTAAGCGTCTACGTTATGACGACTGTCTCGTGAACGACGGCAAACCTCTTGTCTATGGCGGTACACTCTCATTTCAATATGCAAACACTTATCCTTACCCACTTTCAGTCTCCTCAGTTCTATGCATGTGA

mRNA sequence

ATGATGAAAGAACTGTCTACTACTACTACTACTACTACTACTCGGCGTGTATCGGTGATTTTCGCTTTGGTTTTATTCATCTTCTTTTTCGTATCTGCTATTCTTACAGATCCGAATATTATGGATTCCGGTCCACCAAGTTTTCTTCCGTTGGATTTGAATACCACAACAGTTGCTCCTCATCGGAAGCTTCTTCTCACTAGGGAAGCAACAATTGAGGAACCAACCAGAATTTGGGGTGAAAAGTGTACAAAATCAGACATTGTGATTAACCAAGGCCCCACTGCTCCACTTCCAACTGGTATCCCCACCTACACCGTGGAAGTGGTGAACGCTTGTGTCACTGGATGTGAGATTTATGGTATTCATTTCAAATGCGGTTGGTTTAGCTCCGCTCACCTCATCAATCCTAGAGTCTTTAAGCGTCTACGTTATGACGACTGTCTCGTGAACGACGGCAAACCTCTTGTCTATGGCGGTACACTCTCATTTCAATATGCAAACACTTATCCTTACCCACTTTCAGTCTCCTCAGTTCTATGCATGTGA

Coding sequence (CDS)

ATGATGAAAGAACTGTCTACTACTACTACTACTACTACTACTCGGCGTGTATCGGTGATTTTCGCTTTGGTTTTATTCATCTTCTTTTTCGTATCTGCTATTCTTACAGATCCGAATATTATGGATTCCGGTCCACCAAGTTTTCTTCCGTTGGATTTGAATACCACAACAGTTGCTCCTCATCGGAAGCTTCTTCTCACTAGGGAAGCAACAATTGAGGAACCAACCAGAATTTGGGGTGAAAAGTGTACAAAATCAGACATTGTGATTAACCAAGGCCCCACTGCTCCACTTCCAACTGGTATCCCCACCTACACCGTGGAAGTGGTGAACGCTTGTGTCACTGGATGTGAGATTTATGGTATTCATTTCAAATGCGGTTGGTTTAGCTCCGCTCACCTCATCAATCCTAGAGTCTTTAAGCGTCTACGTTATGACGACTGTCTCGTGAACGACGGCAAACCTCTTGTCTATGGCGGTACACTCTCATTTCAATATGCAAACACTTATCCTTACCCACTTTCAGTCTCCTCAGTTCTATGCATGTGA

Protein sequence

MMKELSTTTTTTTTRRVSVIFALVLFIFFFVSAILTDPNIMDSGPPSFLPLDLNTTTVAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVLCM

Homology

[Close]

BLAST of CsGy1G009800 vs. NCBI nr
Match: XP_004153503.1 (PREDICTED: protein TAPETUM DETERMINANT 1 [Cucumis sativus] >XP_011652240.1 PREDICTED: protein TAPETUM DETERMINANT 1 [Cucumis sativus] >XP_011652243.1 PREDICTED: protein TAPETUM DETERMINANT 1 [Cucumis sativus] >KGN64432.1 hypothetical protein Csa_1G051700 [Cucumis sativus])

HSP 1 Score: 322.8 bits (826), Expect = 7.6e-85
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1   MMKELSXXXXXXXXXXXXXXXXXXXXXXXXXSAILTDPNIMDSGPPSFLPLDLNTTTVAP 60
           MMKELSXXXXXXXXXXXXXXXXXXXXXXXXXSAILTDPNIMDSGPPSFLPLDLNTTTVAP
Sbjct: 1   MMKELSXXXXXXXXXXXXXXXXXXXXXXXXXSAILTDPNIMDSGPPSFLPLDLNTTTVAP 60

Query: 61  HRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCEIY 120
           HRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCEIY
Sbjct: 61  HRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCEIY 120

Query: 121 GIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVL 180
           GIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVL
Sbjct: 121 GIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVL 180

Query: 181 CM 183
           CM
Sbjct: 181 CM 182

[Close]

BLAST of CsGy1G009800 vs. NCBI nr
Match: XP_008439976.1 (PREDICTED: protein TAPETUM DETERMINANT 1 [Cucumis melo] >XP_008439984.1 PREDICTED: protein TAPETUM DETERMINANT 1 [Cucumis melo] >XP_008439993.1 PREDICTED: protein TAPETUM DETERMINANT 1 [Cucumis melo] >XP_008440012.1 PREDICTED: protein TAPETUM DETERMINANT 1 [Cucumis melo])

HSP 1 Score: 302.4 bits (773), Expect = 1.1e-78
Identity = 141/144 (97.92%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 39  NIMDSGPPSFLPLDLNTTTVAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPL 98
           NIMDS PPSFLPL+LNTTTVAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPL
Sbjct: 39  NIMDSSPPSFLPLNLNTTTVAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPL 98

Query: 99  PTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVY 158
           PTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVY
Sbjct: 99  PTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVY 158

Query: 159 GGTLSFQYANTYPYPLSVSSVLCM 183
           GGTLSFQYANTYPYPLSVSSVLC+
Sbjct: 159 GGTLSFQYANTYPYPLSVSSVLCI 182

[Close]

BLAST of CsGy1G009800 vs. NCBI nr
Match: XP_022137731.1 (protein TAPETUM DETERMINANT 1-like isoform X1 [Momordica charantia] >XP_022137732.1 protein TAPETUM DETERMINANT 1-like isoform X1 [Momordica charantia] >XP_022137733.1 protein TAPETUM DETERMINANT 1-like isoform X1 [Momordica charantia] >XP_022137734.1 protein TAPETUM DETERMINANT 1-like isoform X1 [Momordica charantia] >XP_022137735.1 protein TAPETUM DETERMINANT 1-like isoform X1 [Momordica charantia])

HSP 1 Score: 292.0 bits (746), Expect = 1.4e-75
Identity = 138/154 (89.61%), Postives = 146/154 (94.81%), Query Frame = 0


Query: 32  SAILTDPNI----MDSGPPSFLPLDLNTTTVAPHRKLLLTREATIEEPTRIWGEKCTKSD 91
           SA+LTD +I    M+S PPS+LPL LNTT VAPHRKLLLT+EATIEEPTRIWGEKCTKSD
Sbjct: 31  SALLTDLDIIGSFMNSSPPSYLPLGLNTTIVAPHRKLLLTKEATIEEPTRIWGEKCTKSD 90

Query: 92  IVINQGPTAPLPTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDD 151
           IVINQGPTAPLPTGIPTYTVEVVNACVTGC+IYGIHFKCGWFSSAHLINPRVFKRLRYDD
Sbjct: 91  IVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYGIHFKCGWFSSAHLINPRVFKRLRYDD 150

Query: 152 CLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVLC 182
           CLVNDGKPLVYGGTLSFQYANT+PYPLSVSSV+C
Sbjct: 151 CLVNDGKPLVYGGTLSFQYANTFPYPLSVSSVVC 184

[Close]

BLAST of CsGy1G009800 vs. NCBI nr
Match: XP_022923940.1 (protein TAPETUM DETERMINANT 1-like [Cucurbita moschata] >XP_022923941.1 protein TAPETUM DETERMINANT 1-like [Cucurbita moschata] >XP_022923942.1 protein TAPETUM DETERMINANT 1-like [Cucurbita moschata] >XP_022923943.1 protein TAPETUM DETERMINANT 1-like [Cucurbita moschata])

HSP 1 Score: 288.9 bits (738), Expect = 1.2e-74
Identity = 139/154 (90.26%), Postives = 143/154 (92.86%), Query Frame = 0


Query: 32  SAILTDPNI----MDSGPPSFLPLDLNTTTVAPHRKLLLTREATIEEPTRIWGEKCTKSD 91
           SAILTD +I    MDS PPSFL L LN+T  APHRKLLLTREATIEEPTRIWGEKCTKSD
Sbjct: 26  SAILTDLDIFHSFMDSSPPSFLRLGLNSTIGAPHRKLLLTREATIEEPTRIWGEKCTKSD 85

Query: 92  IVINQGPTAPLPTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDD 151
           IVINQGPTAPLPTGIPTYTVEVVNACVTGC+IYGIHFKCGWFSSAHLINPRVFKRL YDD
Sbjct: 86  IVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYGIHFKCGWFSSAHLINPRVFKRLHYDD 145

Query: 152 CLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVLC 182
           CLVNDGKPLVYGGTLSFQYANTYPYPLSVSSV+C
Sbjct: 146 CLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVVC 179

[Close]

BLAST of CsGy1G009800 vs. NCBI nr
Match: XP_022137736.1 (protein TAPETUM DETERMINANT 1-like isoform X2 [Momordica charantia])

HSP 1 Score: 285.4 bits (729), Expect = 1.3e-73
Identity = 137/154 (88.96%), Postives = 145/154 (94.16%), Query Frame = 0


Query: 32  SAILTDPNI----MDSGPPSFLPLDLNTTTVAPHRKLLLTREATIEEPTRIWGEKCTKSD 91
           SA+LTD +I    M+S PPS+LPL LNTT VAPHRKLLLT+ ATIEEPTRIWGEKCTKSD
Sbjct: 31  SALLTDLDIIGSFMNSSPPSYLPLGLNTTIVAPHRKLLLTK-ATIEEPTRIWGEKCTKSD 90

Query: 92  IVINQGPTAPLPTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDD 151
           IVINQGPTAPLPTGIPTYTVEVVNACVTGC+IYGIHFKCGWFSSAHLINPRVFKRLRYDD
Sbjct: 91  IVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYGIHFKCGWFSSAHLINPRVFKRLRYDD 150

Query: 152 CLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVLC 182
           CLVNDGKPLVYGGTLSFQYANT+PYPLSVSSV+C
Sbjct: 151 CLVNDGKPLVYGGTLSFQYANTFPYPLSVSSVVC 183

[Close]

BLAST of CsGy1G009800 vs. TAIR10
Match: AT4G24972.1 (tapetum determinant 1)

HSP 1 Score: 166.0 bits (419), Expect = 2.2e-41
Identity = 85/140 (60.71%), Postives = 99/140 (70.71%), Query Frame = 0


Query: 51  LDL-NTTTVAP---HRKLLLTREATIE-----EPTRIWGEKCTKSDIVINQGPTAPLPTG 110
           LDL  TTT +P   HRK+LL    T +     EP RI GEKC  +DIV+NQ  T P+P G
Sbjct: 37  LDLTKTTTSSPSISHRKMLLLSPGTGKTERSVEPERI-GEKCKSTDIVVNQAVTEPMPNG 96

Query: 111 IPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGT 170
           IP Y VE+ N C++GC I  IH  CGWFSSA LINPRVFKR+ YDDCLVN+GKPL +G T
Sbjct: 97  IPGYMVEITNQCMSGCIISRIHINCGWFSSAKLINPRVFKRIHYDDCLVNNGKPLPFGST 156

Query: 171 LSFQYANTYPYPLSVSSVLC 182
           LSF YANT+PY LSV+ V C
Sbjct: 157 LSFHYANTFPYHLSVAFVTC 175

[Close]

BLAST of CsGy1G009800 vs. TAIR10
Match: AT1G32583.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 159.5 bits (402), Expect = 2.0e-39
Identity = 77/135 (57.04%), Postives = 101/135 (74.81%), Query Frame = 0


Query: 47  SFLPLDLNTTTVAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYT 106
           SF+ ++ N T ++  RKLLL+ +  I + T   G+ C+K DIV+ QG T PLP+G+P+YT
Sbjct: 48  SFVSINENRTALS--RKLLLSPD--IGDGTNRIGQDCSKDDIVLFQGSTNPLPSGVPSYT 107

Query: 107 VEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQY 166
           VE+ N+CV+ C I  IH  CGWFSS  L+NPRVF+RL YDDCLVNDG+PL  G +LSFQY
Sbjct: 108 VEIFNSCVSDCNIAEIHVSCGWFSSVRLVNPRVFRRLDYDDCLVNDGQPLGPGQSLSFQY 167

Query: 167 ANTYPYPLSVSSVLC 182
           AN++ YPLSV+SV C
Sbjct: 168 ANSFSYPLSVASVSC 178

[Close]

BLAST of CsGy1G009800 vs. TAIR10
Match: AT1G05835.1 (PHD finger protein)

HSP 1 Score: 49.3 bits (116), Expect = 2.9e-06
Identity = 28/72 (38.89%), Postives = 40/72 (55.56%), Query Frame = 0


Query: 105 YTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYD--DCLVNDGKPLVYGGTL 164
           + VEV+N C   C I  +  KC  F  + L++P   + L     +C+VNDG PL    TL
Sbjct: 48  FRVEVMNKCPM-CPIINLRLKCQGFPQS-LVDPTFLRVLSSSAGNCVVNDGLPLSPMQTL 107

Query: 165 SFQYANTYPYPL 175
           SF Y+NT+ + L
Sbjct: 108 SFNYSNTHQFAL 117

[Close]

BLAST of CsGy1G009800 vs. Swiss-Prot
Match: sp|Q6TLJ2|TPD1_ARATH (Protein TAPETUM DETERMINANT 1 OS=Arabidopsis thaliana OX=3702 GN=TPD1 PE=1 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 3.9e-40
Identity = 85/140 (60.71%), Postives = 99/140 (70.71%), Query Frame = 0


Query: 51  LDL-NTTTVAP---HRKLLLTREATIE-----EPTRIWGEKCTKSDIVINQGPTAPLPTG 110
           LDL  TTT +P   HRK+LL    T +     EP RI GEKC  +DIV+NQ  T P+P G
Sbjct: 37  LDLTKTTTSSPSISHRKMLLLSPGTGKTERSVEPERI-GEKCKSTDIVVNQAVTEPMPNG 96

Query: 111 IPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGT 170
           IP Y VE+ N C++GC I  IH  CGWFSSA LINPRVFKR+ YDDCLVN+GKPL +G T
Sbjct: 97  IPGYMVEITNQCMSGCIISRIHINCGWFSSAKLINPRVFKRIHYDDCLVNNGKPLPFGST 156

Query: 171 LSFQYANTYPYPLSVSSVLC 182
           LSF YANT+PY LSV+ V C
Sbjct: 157 LSFHYANTFPYHLSVAFVTC 175

[Close]

BLAST of CsGy1G009800 vs. Swiss-Prot
Match: sp|Q1G3T1|TDL1_ARATH (TPD1 protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=TDL1 PE=2 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.6e-38
Identity = 77/135 (57.04%), Postives = 101/135 (74.81%), Query Frame = 0


Query: 47  SFLPLDLNTTTVAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYT 106
           SF+ ++ N T ++  RKLLL+ +  I + T   G+ C+K DIV+ QG T PLP+G+P+YT
Sbjct: 48  SFVSINENRTALS--RKLLLSPD--IGDGTNRIGQDCSKDDIVLFQGSTNPLPSGVPSYT 107

Query: 107 VEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQY 166
           VE+ N+CV+ C I  IH  CGWFSS  L+NPRVF+RL YDDCLVNDG+PL  G +LSFQY
Sbjct: 108 VEIFNSCVSDCNIAEIHVSCGWFSSVRLVNPRVFRRLDYDDCLVNDGQPLGPGQSLSFQY 167

Query: 167 ANTYPYPLSVSSVLC 182
           AN++ YPLSV+SV C
Sbjct: 168 ANSFSYPLSVASVSC 178

[Close]

BLAST of CsGy1G009800 vs. Swiss-Prot
Match: sp|Q2QR54|TDL1A_ORYSJ (TPD1 protein homolog 1A OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1A PE=1 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.0e-28
Identity = 56/102 (54.90%), Postives = 73/102 (71.57%), Query Frame = 0


Query: 87  DIVINQGPTAPLPTGIPTYTVEVVNACV------TGCEIYGIHFKCGWFSSAHLINPRVF 146
           DI I QG   PLP+G+P YTV+V+N C         C I GIH +CGWFSS  L++PRVF
Sbjct: 119 DIAIYQGRATPLPSGVPAYTVDVMNRCAGXXXXDEECAIAGIHVRCGWFSSVSLVDPRVF 178

Query: 147 KRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVLCM 183
           +RL +DDCL+NDG+PL+ G T+SF+Y N++PY LSVS   C+
Sbjct: 179 RRLGHDDCLLNDGRPLLAGETVSFEYTNSFPYKLSVSVATCV 220

[Close]

BLAST of CsGy1G009800 vs. Swiss-Prot
Match: sp|Q8S6P9|TDL1B_ORYSJ (TPD1 protein homolog 1B OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1B PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 9.6e-23
Identity = 45/105 (42.86%), Postives = 72/105 (68.57%), Query Frame = 0


Query: 77  RIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLIN 136
           R+  + C++ ++V+ Q     LP+GIPTY+VE++N C T C +Y +H  CG F+SA L++
Sbjct: 65  RMQPDSCSEQNVVVYQNNAEHLPSGIPTYSVEIINVC-TACTVYDVHISCGEFASAELVD 124

Query: 137 PRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVLC 182
           P  F+R+ ++DCLV  G  L     +SFQY+N++ YPL+V++V C
Sbjct: 125 PSQFQRIGFNDCLVKGGGRLGPSEAVSFQYSNSFAYPLAVANVAC 168

[Close]

BLAST of CsGy1G009800 vs. Swiss-Prot
Match: sp|A8MS78|Y1583_ARATH (Uncharacterized protein At1g05835 OS=Arabidopsis thaliana OX=3702 GN=At1g05835 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 5.3e-05
Identity = 28/72 (38.89%), Postives = 40/72 (55.56%), Query Frame = 0


Query: 105 YTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYD--DCLVNDGKPLVYGGTL 164
           + VEV+N C   C I  +  KC  F  + L++P   + L     +C+VNDG PL    TL
Sbjct: 48  FRVEVMNKCPM-CPIINLRLKCQGFPQS-LVDPTFLRVLSSSAGNCVVNDGLPLSPMQTL 107

Query: 165 SFQYANTYPYPL 175
           SF Y+NT+ + L
Sbjct: 108 SFNYSNTHQFAL 117

[Close]

BLAST of CsGy1G009800 vs. TrEMBL
Match: tr|A0A0A0LUG9|A0A0A0LUG9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G051700 PE=4 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 5.0e-85
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1   MMKELSXXXXXXXXXXXXXXXXXXXXXXXXXSAILTDPNIMDSGPPSFLPLDLNTTTVAP 60
           MMKELSXXXXXXXXXXXXXXXXXXXXXXXXXSAILTDPNIMDSGPPSFLPLDLNTTTVAP
Sbjct: 1   MMKELSXXXXXXXXXXXXXXXXXXXXXXXXXSAILTDPNIMDSGPPSFLPLDLNTTTVAP 60

Query: 61  HRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCEIY 120
           HRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCEIY
Sbjct: 61  HRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCEIY 120

Query: 121 GIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVL 180
           GIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVL
Sbjct: 121 GIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVL 180

Query: 181 CM 183
           CM
Sbjct: 181 CM 182

[Close]

BLAST of CsGy1G009800 vs. TrEMBL
Match: tr|A0A1S3B0P8|A0A1S3B0P8_CUCME (protein TAPETUM DETERMINANT 1 OS=Cucumis melo OX=3656 GN=LOC103484600 PE=4 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 7.0e-79
Identity = 141/144 (97.92%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 39  NIMDSGPPSFLPLDLNTTTVAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPL 98
           NIMDS PPSFLPL+LNTTTVAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPL
Sbjct: 39  NIMDSSPPSFLPLNLNTTTVAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPL 98

Query: 99  PTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVY 158
           PTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVY
Sbjct: 99  PTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVY 158

Query: 159 GGTLSFQYANTYPYPLSVSSVLCM 183
           GGTLSFQYANTYPYPLSVSSVLC+
Sbjct: 159 GGTLSFQYANTYPYPLSVSSVLCI 182

[Close]

BLAST of CsGy1G009800 vs. TrEMBL
Match: tr|A0A067JIC3|A0A067JIC3_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_26409 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.0e-53
Identity = 99/126 (78.57%), Postives = 112/126 (88.89%), Query Frame = 0


Query: 56  TTVAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVT 115
           T  APHRK LL+R   +EEP RIWGEKCTK+DIVINQGPTAPLP+GIPTYTVE++N CVT
Sbjct: 46  TLSAPHRK-LLSRSLAMEEPNRIWGEKCTKADIVINQGPTAPLPSGIPTYTVEIMNVCVT 105

Query: 116 GCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYPLS 175
           GC+I GIH  CGWFSSA LINP++FKRLRY+DCLVNDGKPLV GGTLSF+YANT+ YPLS
Sbjct: 106 GCDISGIHLTCGWFSSARLINPKIFKRLRYNDCLVNDGKPLVNGGTLSFEYANTFHYPLS 165

Query: 176 VSSVLC 182
           VSSV+C
Sbjct: 166 VSSVIC 170

[Close]

BLAST of CsGy1G009800 vs. TrEMBL
Match: tr|A0A061FZR9|A0A061FZR9_THECC (Tapetum determinant 1 OS=Theobroma cacao OX=3641 GN=TCM_014700 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 6.6e-53
Identity = 98/128 (76.56%), Postives = 110/128 (85.94%), Query Frame = 0


Query: 54  NTTTVAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNAC 113
           + T   PHRKLL  R   +EEP RIWGEKCTK+DIVINQGPTAPLP+GIPTYTVE+VN C
Sbjct: 49  DNTLSTPHRKLL--RGMAVEEPNRIWGEKCTKADIVINQGPTAPLPSGIPTYTVEIVNVC 108

Query: 114 VTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYP 173
           VTGC+I GIH  CGWFSSA LINP++FKR+RY+DCLVNDGKPLV GGTLSFQYANT+ YP
Sbjct: 109 VTGCDISGIHLNCGWFSSARLINPKIFKRIRYNDCLVNDGKPLVNGGTLSFQYANTFLYP 168

Query: 174 LSVSSVLC 182
           LSVS V+C
Sbjct: 169 LSVSRVVC 174

[Close]

BLAST of CsGy1G009800 vs. TrEMBL
Match: tr|A0A1R3JXJ7|A0A1R3JXJ7_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_03820 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 8.6e-53
Identity = 98/128 (76.56%), Postives = 110/128 (85.94%), Query Frame = 0


Query: 54  NTTTVAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNAC 113
           N T   PHRKLLL   A +EEP RIWGEKC+K+DIVINQGPTAPLPTGIPTYTVE++N C
Sbjct: 51  NDTLTTPHRKLLL--GAAMEEPNRIWGEKCSKADIVINQGPTAPLPTGIPTYTVEIMNVC 110

Query: 114 VTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYP 173
           V+GC+I GIH  CGWFSSA LINP++FKRLRY+DC+VNDGKPLV GGTLSFQYANT+ YP
Sbjct: 111 VSGCDISGIHLSCGWFSSARLINPKIFKRLRYNDCIVNDGKPLVNGGTLSFQYANTFLYP 170

Query: 174 LSVSSVLC 182
           LSVS V C
Sbjct: 171 LSVSRVAC 176

The following BLAST results are available for this feature:

BLAST of CsGy1G009800 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004153503.1	7.6e-85	100.00	PREDICTED: protein TAPETUM DETERMINANT 1 [Cucumis sativus] >XP_011652240.1 PREDI...	[more]
XP_008439976.1	1.1e-78	97.92	PREDICTED: protein TAPETUM DETERMINANT 1 [Cucumis melo] >XP_008439984.1 PREDICTE...	[more]
XP_022137731.1	1.4e-75	89.61	protein TAPETUM DETERMINANT 1-like isoform X1 [Momordica charantia] >XP_02213773...	[more]
XP_022923940.1	1.2e-74	90.26	protein TAPETUM DETERMINANT 1-like [Cucurbita moschata] >XP_022923941.1 protein ...	[more]
XP_022137736.1	1.3e-73	88.96	protein TAPETUM DETERMINANT 1-like isoform X2 [Momordica charantia]	[more]

BLAST of CsGy1G009800 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G24972.1	2.2e-41	60.71	tapetum determinant 1	[more]
AT1G32583.1	2.0e-39	57.04	FUNCTIONS IN: molecular_function unknown	[more]
AT1G05835.1	2.9e-06	38.89	PHD finger protein	[more]

BLAST of CsGy1G009800 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q6TLJ2\|TPD1_ARATH	3.9e-40	60.71	Protein TAPETUM DETERMINANT 1 OS=Arabidopsis thaliana OX=3702 GN=TPD1 PE=1 SV=1	[more]
sp\|Q1G3T1\|TDL1_ARATH	3.6e-38	57.04	TPD1 protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=TDL1 PE=2 SV=1	[more]
sp\|Q2QR54\|TDL1A_ORYSJ	2.0e-28	54.90	TPD1 protein homolog 1A OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1A PE=1 S...	[more]
sp\|Q8S6P9\|TDL1B_ORYSJ	9.6e-23	42.86	TPD1 protein homolog 1B OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1B PE=2 S...	[more]
sp\|A8MS78\|Y1583_ARATH	5.3e-05	38.89	Uncharacterized protein At1g05835 OS=Arabidopsis thaliana OX=3702 GN=At1g05835 P...	[more]

BLAST of CsGy1G009800 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LUG9\|A0A0A0LUG9_CUCSA	5.0e-85	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G051700 PE=4 SV=1	[more]
tr\|A0A1S3B0P8\|A0A1S3B0P8_CUCME	7.0e-79	97.92	protein TAPETUM DETERMINANT 1 OS=Cucumis melo OX=3656 GN=LOC103484600 PE=4 SV=1	[more]
tr\|A0A067JIC3\|A0A067JIC3_JATCU	1.0e-53	78.57	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_26409 PE=4 SV=1	[more]
tr\|A0A061FZR9\|A0A061FZR9_THECC	6.6e-53	76.56	Tapetum determinant 1 OS=Theobroma cacao OX=3641 GN=TCM_014700 PE=4 SV=1	[more]
tr\|A0A1R3JXJ7\|A0A1R3JXJ7_COCAP	8.6e-53	76.56	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_03820 PE=4 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G009800.1	CsGy1G009800.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33184	FAMILY NOT NAMED	coord: 19..181
None	No IPR available	PANTHER	PTHR33184:SF2	PROTEIN TAPETUM DETERMINANT 1	coord: 19..181

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G009800	Cla002639	Watermelon (97103) v1	cgybwmB010
CsGy1G009800	Csa1G051700	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G009800	MELO3C002379	Melon (DHL92) v3.5.1	cgybmeB022
CsGy1G009800	ClCG03G003950	Watermelon (Charleston Gray)	cgybwcgB033
CsGy1G009800	CSPI01G09780	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G009800	CmaCh13G008230	Cucurbita maxima (Rimu)	cgybcmaB063
CsGy1G009800	CmaCh18G003030	Cucurbita maxima (Rimu)	cgybcmaB093
CsGy1G009800	CmoCh13G008540	Cucurbita moschata (Rifu)	cgybcmoB058
CsGy1G009800	CmoCh18G002330	Cucurbita moschata (Rifu)	cgybcmoB082
CsGy1G009800	Lsi02G005220	Bottle gourd (USVL1VR-Ls)	cgyblsiB018
CsGy1G009800	Cp4.1LG20g02950	Cucurbita pepo (Zucchini)	cgybcpeB080
CsGy1G009800	Cp4.1LG09g09510	Cucurbita pepo (Zucchini)	cgybcpeB018
CsGy1G009800	MELO3C002379.2	Melon (DHL92) v3.6.1	cgybmedB020
CsGy1G009800	CsaV3_1G009840	Cucumber (Chinese Long) v3	cgybcucB002
CsGy1G009800	Cla97C03G055110	Watermelon (97103) v2	cgybwmbB032
CsGy1G009800	Bhi08G001251	Wax gourd	cgybwgoB029
CsGy1G009800	Carg06810	Silver-seed gourd	carcgybB0500
CsGy1G009800	Carg07616	Silver-seed gourd	carcgybB0989

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G009800	Cucumber (Gy14) v2	cgybcgybB005
CsGy1G009800	Cucurbita maxima (Rimu)	cgybcmaB025
CsGy1G009800	Cucurbita maxima (Rimu)	cgybcmaB049
CsGy1G009800	Cucurbita moschata (Rifu)	cgybcmoB026
CsGy1G009800	Cucurbita moschata (Rifu)	cgybcmoB046
CsGy1G009800	Cucurbita pepo (Zucchini)	cgybcpeB049
CsGy1G009800	Cucurbita pepo (Zucchini)	cgybcpeB123
CsGy1G009800	Cucumber (Chinese Long) v2	cgybcuB014
CsGy1G009800	Bottle gourd (USVL1VR-Ls)	cgyblsiB064
CsGy1G009800	Melon (DHL92) v3.5.1	cgybmeB046
CsGy1G009800	Melon (DHL92) v3.6.1	cgybmedB041
CsGy1G009800	Watermelon (Charleston Gray)	cgybwcgB069
CsGy1G009800	Watermelon (97103) v1	cgybwmB087
CsGy1G009800	Wild cucumber (PI 183967)	cgybcpiB013
CsGy1G009800	Silver-seed gourd	carcgybB0373
CsGy1G009800	Cucumber (Chinese Long) v3	cgybcucB010
CsGy1G009800	Watermelon (97103) v2	cgybwmbB070