CsaV3_1G009840 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G009840
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	protein TAPETUM DETERMINANT 1
Location	chr1 : 6107500 .. 6111147 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCTTTTTACCCCTTTTCTTTTCTTTTCTTTTCTTATTTTTTTGGACTCCCCCTCCACTTCTTCTTCCCTCCTCCCACACTTCGCCGCCCTTCGCCTCCTTCGCCCCCGCCTCTCCTTTCACCCTCCTCCTCTACGCTTTTACTTTTCTCCATTCCTTTCCTCTCCTTCTGCACCATTTTTTCCTTTCATTTAATGCCTTCAAACAAAACGTAGAGTGTGATGATTTTCCCTTTTTCAGGATCCTGGTGTTTTGTTATTTACAGGTATCCACGATTTCCCTTCTGTCATTTTTGTCTCTCCTCTACTGAACTTTCTGCTCCATTTTCATCTTGTACGTACTCTCCATCTTTTCCTTTTTTCTGTTTCACTTTTTCTCTCTTTCTCTCCCTCTCGCATGCCTTTTCATTTCTCTCTATTCTTTTCCCTTTTACTCTCTTTCCTTCTTCTTCTACCCTAACTGTCACTTCTCTTGCACCATAACACGCTTCGTTTTTTTTCTTTTTTCTTCTCTTCCATTTCTTTGTATTCCCTCTTTTTCTTACACGGTTTCTGCGTTGTCGTTTCATTAATTTCGCCTACACCTACTGGTGGGGGTAACTACTAACTATAGCTCTGATTCTGACCATTTTTCAGCCTCTGCGACTCTTTATGGCGATGCTTCTTCCTTTAAACTCAATCGACTTCTCTCTGTATATCTCTTGCTTTCGACGGCTCTTCTTTTCTTTTTTGACTCCTTGTGTTTTCAAATCCCATTTTTTCTCTCTGATGATGTGATGTTTTCATTCTTTTCCCAACGCAGGTTCTTTAGTTTCTGAAGTTTCTTCTCTCTTATCAAGGATCGGTTGCCTCTTCCGATTCCCATTTCTTTCCTTTCACTGTACAACAGTTCTTTCCGGAGTTTACAGGATTCTCTGTTATAAATGATGAAAGAACTGTCTACTACTACTACTACTACTACTACTCGGCGTGTATCGGTGATTTTCGCTTTGGTTTTATTCATCTTCTTTTTCGTATCTGCTATTCTTACAGGTCTGTATCATCTCTCGCTCTCCGTTCTTCGTTTTGTTTTCAATTTGTTTTTACTGTGTGTTTTGATTTGTTATACTTTTACGTCGCCTCTCTCTCTCTCTCTCTCTCTTTCTCTGTGGGTTTACCTTTTGTTTTGTCTTCTTCTTCCTGTATATTTTATTTGTTCCTCAATCATTGTTCTCTCCTTTGTCTTTTTCTGCTTCGTATAGAAACAAAGATATTATTCTTCTTCTACTACTTTTTTTCACATCATTTTCTTCCTTACATGATTGCAGATCCGAATATTATGGATTCCGGTCCACCAAGTTTTCTTCCGTTGGATTTGAATACCACAACAGTTGCTCCTCATCGGAAGCTTCTTCTCACTAGTAAGTTTACGAAAATCTGATTTAATCGCGTATTCATAAATGTTATACCAGCAGATTCGTTATTCGGAGGAATCGTTATTCTTTTCTGAGTTTGTCGTTGGTTTTTGTTTTAAATGTCTGTTTGATTTTGGAATTATGATCTTGGGGATGAGGGGAGGGATTGAAAGATTGGGTACTCAATTGCATATATAGTTGATTTGTTGTCAGAATTGCACGCCCATCCATTCTTAGTAATGAAGCTAAGGCGCACCTTTTTCTATGTAGCTTTCAACTCCTTCTTTCTGTTCTTTAACCTATATGGCCTTTCTGTAGCTGTTTTTGGAGAAATCTTCTTTATTTGATCCTATATACCCACCAGCATTTCTTCCTTTTTCTGTCCACAATTCATTGATTACATAAAAGCAACCTTTGGCCCGAAAGCGTGGAGCATTATAATGCCTTTTTCAGTTTTAGCTTTTGAGCTTCTAATTGAATTCATTGCTTTGACAAAAAAGCTCTACCAGTGTGTGTGTATTAAATTATATCAAACGATTAGCTAATGCGTGGACTCTCTTTAGTGGGATTGTTGAGGGTACAGTTTTATTAGTTTTAAACTTTCATATGATTTTTTTTTTAATTTTAAATTTTGTCATGCCTAACCAAATGGATTGAATTTAGATAATGGTGCCTTGGGATTTTTCTTTTTCATACTCTCTTTATCTTTACCTTCGCCTTTGAATTTGCTTTATCCTTTATAATTCATTATTAATGCTTTGAACACAACTTTTATGACTTTCAGAAAGTGTAGTTTGTGTGTCTGTAGTTGTTTTTCCATTGGGTGGGTCGATATTTATTTATAAGAGTAATGTTTGCACGTGGGTGGTGCCTTCAACAATGCCATAATATACGATGCCAACAAATGACGTCGACCTGTTTGCTTCTTTATTTGAATATGTGCTTTTTAGGGGAAGCAACAATTGAGGAACCAACCAGAATTTGGGGTGAAAAGTGTACAAAATCAGACATTGTGATTAACCAAGGCCCCACTGCTCCACTTCCAACTGGTATCCCCACCTACACCGTGGAAGTGGTGAACGCTTGTGTCACTGGATGTGAGATTTATGGTATTCATTTCAAATGCGGTTGGTTTAGCTCCGCTCACCTCATCAATCCTAGAGTCTTTAAGCGTCTACGTTATGACGACTGTCTCGTGAACGACGGCAAACCTCTTGTCTATGGCGGTACACTCTCATTTCAATATGCAAACACTTATCCTTACCCACTTTCAGTCTCCTCAGTTCTATGCATGTGAAATGACACACCCACCAGACCAATTAGGAGACGCTCATATGAAGCACTTGAAGCAGCAGCAGGTACTTTAGTCGATTACTGATTGACGATGGCCGCCCCCACCTGCCTTTTCTTGTCCCTTCTTTTCTGTTTTTTTTTTTTTTTTTTTTTT

mRNA sequence

ATGATGAAAGAACTGTCTACTACTACTACTACTACTACTACTCGGCGTGTATCGGTGATTTTCGCTTTGGTTTTATTCATCTTCTTTTTCGTATCTGCTATTCTTACAGATCCGAATATTATGGATTCCGGTCCACCAAGTTTTCTTCCGTTGGATTTGAATACCACAACAGTTGCTCCTCATCGGAAGCTTCTTCTCACTAGGGAAGCAACAATTGAGGAACCAACCAGAATTTGGGGTGAAAAGTGTACAAAATCAGACATTGTGATTAACCAAGGCCCCACTGCTCCACTTCCAACTGGTATCCCCACCTACACCGTGGAAGTGGTGAACGCTTGTGTCACTGGATGTGAGATTTATGGTATTCATTTCAAATGCGGTTGGTTTAGCTCCGCTCACCTCATCAATCCTAGAGTCTTTAAGCGTCTACGTTATGACGACTGTCTCGTGAACGACGGCAAACCTCTTGTCTATGGCGGTACACTCTCATTTCAATATGCAAACACTTATCCTTACCCACTTTCAGTCTCCTCAGTTCTATGCATGTGA

Coding sequence (CDS)

ATGATGAAAGAACTGTCTACTACTACTACTACTACTACTACTCGGCGTGTATCGGTGATTTTCGCTTTGGTTTTATTCATCTTCTTTTTCGTATCTGCTATTCTTACAGATCCGAATATTATGGATTCCGGTCCACCAAGTTTTCTTCCGTTGGATTTGAATACCACAACAGTTGCTCCTCATCGGAAGCTTCTTCTCACTAGGGAAGCAACAATTGAGGAACCAACCAGAATTTGGGGTGAAAAGTGTACAAAATCAGACATTGTGATTAACCAAGGCCCCACTGCTCCACTTCCAACTGGTATCCCCACCTACACCGTGGAAGTGGTGAACGCTTGTGTCACTGGATGTGAGATTTATGGTATTCATTTCAAATGCGGTTGGTTTAGCTCCGCTCACCTCATCAATCCTAGAGTCTTTAAGCGTCTACGTTATGACGACTGTCTCGTGAACGACGGCAAACCTCTTGTCTATGGCGGTACACTCTCATTTCAATATGCAAACACTTATCCTTACCCACTTTCAGTCTCCTCAGTTCTATGCATGTGA

Protein sequence

MMKELSTTTTTTTTRRVSVIFALVLFIFFFVSAILTDPNIMDSGPPSFLPLDLNTTTVAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVLCM

Homology

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BLAST of CsaV3_1G009840 vs. NCBI nr
Match: XP_004153503.1 (PREDICTED: protein TAPETUM DETERMINANT 1 [Cucumis sativus] >XP_011652240.1 PREDICTED: protein TAPETUM DETERMINANT 1 [Cucumis sativus] >XP_011652243.1 PREDICTED: protein TAPETUM DETERMINANT 1 [Cucumis sativus] >KGN64432.1 hypothetical protein Csa_1G051700 [Cucumis sativus])

HSP 1 Score: 323.6 bits (828), Expect = 4.5e-85
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1   MMKELSXXXXXXXXXXXXXXXXXXXXXXXXXSAILTDPNIMDSGPPSFLPLDLNTTTVAP 60
           MMKELSXXXXXXXXXXXXXXXXXXXXXXXXXSAILTDPNIMDSGPPSFLPLDLNTTTVAP
Sbjct: 1   MMKELSXXXXXXXXXXXXXXXXXXXXXXXXXSAILTDPNIMDSGPPSFLPLDLNTTTVAP 60

Query: 61  HRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCEIY 120
           HRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCEIY
Sbjct: 61  HRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCEIY 120

Query: 121 GIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVL 180
           GIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVL
Sbjct: 121 GIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVL 180

Query: 181 CM 183
           CM
Sbjct: 181 CM 182

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BLAST of CsaV3_1G009840 vs. NCBI nr
Match: XP_008439976.1 (PREDICTED: protein TAPETUM DETERMINANT 1 [Cucumis melo] >XP_008439984.1 PREDICTED: protein TAPETUM DETERMINANT 1 [Cucumis melo] >XP_008439993.1 PREDICTED: protein TAPETUM DETERMINANT 1 [Cucumis melo] >XP_008440012.1 PREDICTED: protein TAPETUM DETERMINANT 1 [Cucumis melo])

HSP 1 Score: 303.1 bits (775), Expect = 6.2e-79
Identity = 141/144 (97.92%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 39  NIMDSGPPSFLPLDLNTTTVAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPL 98
           NIMDS PPSFLPL+LNTTTVAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPL
Sbjct: 39  NIMDSSPPSFLPLNLNTTTVAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPL 98

Query: 99  PTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVY 158
           PTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVY
Sbjct: 99  PTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVY 158

Query: 159 GGTLSFQYANTYPYPLSVSSVLCM 183
           GGTLSFQYANTYPYPLSVSSVLC+
Sbjct: 159 GGTLSFQYANTYPYPLSVSSVLCI 182

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BLAST of CsaV3_1G009840 vs. NCBI nr
Match: XP_022137731.1 (protein TAPETUM DETERMINANT 1-like isoform X1 [Momordica charantia] >XP_022137732.1 protein TAPETUM DETERMINANT 1-like isoform X1 [Momordica charantia] >XP_022137733.1 protein TAPETUM DETERMINANT 1-like isoform X1 [Momordica charantia] >XP_022137734.1 protein TAPETUM DETERMINANT 1-like isoform X1 [Momordica charantia] >XP_022137735.1 protein TAPETUM DETERMINANT 1-like isoform X1 [Momordica charantia])

HSP 1 Score: 292.7 bits (748), Expect = 8.4e-76
Identity = 138/154 (89.61%), Postives = 146/154 (94.81%), Query Frame = 0


Query: 32  SAILTDPNI----MDSGPPSFLPLDLNTTTVAPHRKLLLTREATIEEPTRIWGEKCTKSD 91
           SA+LTD +I    M+S PPS+LPL LNTT VAPHRKLLLT+EATIEEPTRIWGEKCTKSD
Sbjct: 31  SALLTDLDIIGSFMNSSPPSYLPLGLNTTIVAPHRKLLLTKEATIEEPTRIWGEKCTKSD 90

Query: 92  IVINQGPTAPLPTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDD 151
           IVINQGPTAPLPTGIPTYTVEVVNACVTGC+IYGIHFKCGWFSSAHLINPRVFKRLRYDD
Sbjct: 91  IVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYGIHFKCGWFSSAHLINPRVFKRLRYDD 150

Query: 152 CLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVLC 182
           CLVNDGKPLVYGGTLSFQYANT+PYPLSVSSV+C
Sbjct: 151 CLVNDGKPLVYGGTLSFQYANTFPYPLSVSSVVC 184

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BLAST of CsaV3_1G009840 vs. NCBI nr
Match: XP_022923940.1 (protein TAPETUM DETERMINANT 1-like [Cucurbita moschata] >XP_022923941.1 protein TAPETUM DETERMINANT 1-like [Cucurbita moschata] >XP_022923942.1 protein TAPETUM DETERMINANT 1-like [Cucurbita moschata] >XP_022923943.1 protein TAPETUM DETERMINANT 1-like [Cucurbita moschata])

HSP 1 Score: 289.7 bits (740), Expect = 7.1e-75
Identity = 139/154 (90.26%), Postives = 143/154 (92.86%), Query Frame = 0


Query: 32  SAILTDPNI----MDSGPPSFLPLDLNTTTVAPHRKLLLTREATIEEPTRIWGEKCTKSD 91
           SAILTD +I    MDS PPSFL L LN+T  APHRKLLLTREATIEEPTRIWGEKCTKSD
Sbjct: 26  SAILTDLDIFHSFMDSSPPSFLRLGLNSTIGAPHRKLLLTREATIEEPTRIWGEKCTKSD 85

Query: 92  IVINQGPTAPLPTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDD 151
           IVINQGPTAPLPTGIPTYTVEVVNACVTGC+IYGIHFKCGWFSSAHLINPRVFKRL YDD
Sbjct: 86  IVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYGIHFKCGWFSSAHLINPRVFKRLHYDD 145

Query: 152 CLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVLC 182
           CLVNDGKPLVYGGTLSFQYANTYPYPLSVSSV+C
Sbjct: 146 CLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVVC 179

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BLAST of CsaV3_1G009840 vs. NCBI nr
Match: XP_022137736.1 (protein TAPETUM DETERMINANT 1-like isoform X2 [Momordica charantia])

HSP 1 Score: 285.8 bits (730), Expect = 1.0e-73
Identity = 137/154 (88.96%), Postives = 145/154 (94.16%), Query Frame = 0


Query: 32  SAILTDPNI----MDSGPPSFLPLDLNTTTVAPHRKLLLTREATIEEPTRIWGEKCTKSD 91
           SA+LTD +I    M+S PPS+LPL LNTT VAPHRKLLLT+ ATIEEPTRIWGEKCTKSD
Sbjct: 31  SALLTDLDIIGSFMNSSPPSYLPLGLNTTIVAPHRKLLLTK-ATIEEPTRIWGEKCTKSD 90

Query: 92  IVINQGPTAPLPTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDD 151
           IVINQGPTAPLPTGIPTYTVEVVNACVTGC+IYGIHFKCGWFSSAHLINPRVFKRLRYDD
Sbjct: 91  IVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYGIHFKCGWFSSAHLINPRVFKRLRYDD 150

Query: 152 CLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVLC 182
           CLVNDGKPLVYGGTLSFQYANT+PYPLSVSSV+C
Sbjct: 151 CLVNDGKPLVYGGTLSFQYANTFPYPLSVSSVVC 183

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BLAST of CsaV3_1G009840 vs. TAIR10
Match: AT4G24972.1 (tapetum determinant 1)

HSP 1 Score: 166.8 bits (421), Expect = 1.3e-41
Identity = 85/140 (60.71%), Postives = 99/140 (70.71%), Query Frame = 0


Query: 51  LDL-NTTTVAP---HRKLLLTREATIE-----EPTRIWGEKCTKSDIVINQGPTAPLPTG 110
           LDL  TTT +P   HRK+LL    T +     EP RI GEKC  +DIV+NQ  T P+P G
Sbjct: 37  LDLTKTTTSSPSISHRKMLLLSPGTGKTERSVEPERI-GEKCKSTDIVVNQAVTEPMPNG 96

Query: 111 IPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGT 170
           IP Y VE+ N C++GC I  IH  CGWFSSA LINPRVFKR+ YDDCLVN+GKPL +G T
Sbjct: 97  IPGYMVEITNQCMSGCIISRIHINCGWFSSAKLINPRVFKRIHYDDCLVNNGKPLPFGST 156

Query: 171 LSFQYANTYPYPLSVSSVLC 182
           LSF YANT+PY LSV+ V C
Sbjct: 157 LSFHYANTFPYHLSVAFVTC 175

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BLAST of CsaV3_1G009840 vs. TAIR10
Match: AT1G32583.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 160.2 bits (404), Expect = 1.2e-39
Identity = 77/135 (57.04%), Postives = 101/135 (74.81%), Query Frame = 0


Query: 47  SFLPLDLNTTTVAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYT 106
           SF+ ++ N T ++  RKLLL+ +  I + T   G+ C+K DIV+ QG T PLP+G+P+YT
Sbjct: 48  SFVSINENRTALS--RKLLLSPD--IGDGTNRIGQDCSKDDIVLFQGSTNPLPSGVPSYT 107

Query: 107 VEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQY 166
           VE+ N+CV+ C I  IH  CGWFSS  L+NPRVF+RL YDDCLVNDG+PL  G +LSFQY
Sbjct: 108 VEIFNSCVSDCNIAEIHVSCGWFSSVRLVNPRVFRRLDYDDCLVNDGQPLGPGQSLSFQY 167

Query: 167 ANTYPYPLSVSSVLC 182
           AN++ YPLSV+SV C
Sbjct: 168 ANSFSYPLSVASVSC 178

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BLAST of CsaV3_1G009840 vs. TAIR10
Match: AT1G05835.1 (PHD finger protein)

HSP 1 Score: 49.7 bits (117), Expect = 2.3e-06
Identity = 28/72 (38.89%), Postives = 40/72 (55.56%), Query Frame = 0


Query: 105 YTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYD--DCLVNDGKPLVYGGTL 164
           + VEV+N C   C I  +  KC  F  + L++P   + L     +C+VNDG PL    TL
Sbjct: 48  FRVEVMNKCPM-CPIINLRLKCQGFPQS-LVDPTFLRVLSSSAGNCVVNDGLPLSPMQTL 107

Query: 165 SFQYANTYPYPL 175
           SF Y+NT+ + L
Sbjct: 108 SFNYSNTHQFAL 117

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BLAST of CsaV3_1G009840 vs. Swiss-Prot
Match: sp|Q6TLJ2|TPD1_ARATH (Protein TAPETUM DETERMINANT 1 OS=Arabidopsis thaliana OX=3702 GN=TPD1 PE=1 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.3e-40
Identity = 85/140 (60.71%), Postives = 99/140 (70.71%), Query Frame = 0


Query: 51  LDL-NTTTVAP---HRKLLLTREATIE-----EPTRIWGEKCTKSDIVINQGPTAPLPTG 110
           LDL  TTT +P   HRK+LL    T +     EP RI GEKC  +DIV+NQ  T P+P G
Sbjct: 37  LDLTKTTTSSPSISHRKMLLLSPGTGKTERSVEPERI-GEKCKSTDIVVNQAVTEPMPNG 96

Query: 111 IPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGT 170
           IP Y VE+ N C++GC I  IH  CGWFSSA LINPRVFKR+ YDDCLVN+GKPL +G T
Sbjct: 97  IPGYMVEITNQCMSGCIISRIHINCGWFSSAKLINPRVFKRIHYDDCLVNNGKPLPFGST 156

Query: 171 LSFQYANTYPYPLSVSSVLC 182
           LSF YANT+PY LSV+ V C
Sbjct: 157 LSFHYANTFPYHLSVAFVTC 175

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BLAST of CsaV3_1G009840 vs. Swiss-Prot
Match: sp|Q1G3T1|TDL1_ARATH (TPD1 protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=TDL1 PE=2 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.1e-38
Identity = 77/135 (57.04%), Postives = 101/135 (74.81%), Query Frame = 0


Query: 47  SFLPLDLNTTTVAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYT 106
           SF+ ++ N T ++  RKLLL+ +  I + T   G+ C+K DIV+ QG T PLP+G+P+YT
Sbjct: 48  SFVSINENRTALS--RKLLLSPD--IGDGTNRIGQDCSKDDIVLFQGSTNPLPSGVPSYT 107

Query: 107 VEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQY 166
           VE+ N+CV+ C I  IH  CGWFSS  L+NPRVF+RL YDDCLVNDG+PL  G +LSFQY
Sbjct: 108 VEIFNSCVSDCNIAEIHVSCGWFSSVRLVNPRVFRRLDYDDCLVNDGQPLGPGQSLSFQY 167

Query: 167 ANTYPYPLSVSSVLC 182
           AN++ YPLSV+SV C
Sbjct: 168 ANSFSYPLSVASVSC 178

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BLAST of CsaV3_1G009840 vs. Swiss-Prot
Match: sp|Q2QR54|TDL1A_ORYSJ (TPD1 protein homolog 1A OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1A PE=1 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 9.0e-29
Identity = 56/102 (54.90%), Postives = 73/102 (71.57%), Query Frame = 0


Query: 87  DIVINQGPTAPLPTGIPTYTVEVVNACV------TGCEIYGIHFKCGWFSSAHLINPRVF 146
           DI I QG   PLP+G+P YTV+V+N C         C I GIH +CGWFSS  L++PRVF
Sbjct: 119 DIAIYQGRATPLPSGVPAYTVDVMNRCAGXXXXDEECAIAGIHVRCGWFSSVSLVDPRVF 178

Query: 147 KRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVLCM 183
           +RL +DDCL+NDG+PL+ G T+SF+Y N++PY LSVS   C+
Sbjct: 179 RRLGHDDCLLNDGRPLLAGETVSFEYTNSFPYKLSVSVATCV 220

[Close]

BLAST of CsaV3_1G009840 vs. Swiss-Prot
Match: sp|Q8S6P9|TDL1B_ORYSJ (TPD1 protein homolog 1B OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1B PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 5.7e-23
Identity = 45/105 (42.86%), Postives = 72/105 (68.57%), Query Frame = 0


Query: 77  RIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLIN 136
           R+  + C++ ++V+ Q     LP+GIPTY+VE++N C T C +Y +H  CG F+SA L++
Sbjct: 65  RMQPDSCSEQNVVVYQNNAEHLPSGIPTYSVEIINVC-TACTVYDVHISCGEFASAELVD 124

Query: 137 PRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVLC 182
           P  F+R+ ++DCLV  G  L     +SFQY+N++ YPL+V++V C
Sbjct: 125 PSQFQRIGFNDCLVKGGGRLGPSEAVSFQYSNSFAYPLAVANVAC 168

[Close]

BLAST of CsaV3_1G009840 vs. Swiss-Prot
Match: sp|A8MS78|Y1583_ARATH (Uncharacterized protein At1g05835 OS=Arabidopsis thaliana OX=3702 GN=At1g05835 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 4.1e-05
Identity = 28/72 (38.89%), Postives = 40/72 (55.56%), Query Frame = 0


Query: 105 YTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYD--DCLVNDGKPLVYGGTL 164
           + VEV+N C   C I  +  KC  F  + L++P   + L     +C+VNDG PL    TL
Sbjct: 48  FRVEVMNKCPM-CPIINLRLKCQGFPQS-LVDPTFLRVLSSSAGNCVVNDGLPLSPMQTL 107

Query: 165 SFQYANTYPYPL 175
           SF Y+NT+ + L
Sbjct: 108 SFNYSNTHQFAL 117

[Close]

BLAST of CsaV3_1G009840 vs. TrEMBL
Match: tr|A0A0A0LUG9|A0A0A0LUG9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G051700 PE=4 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 3.0e-85
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1   MMKELSXXXXXXXXXXXXXXXXXXXXXXXXXSAILTDPNIMDSGPPSFLPLDLNTTTVAP 60
           MMKELSXXXXXXXXXXXXXXXXXXXXXXXXXSAILTDPNIMDSGPPSFLPLDLNTTTVAP
Sbjct: 1   MMKELSXXXXXXXXXXXXXXXXXXXXXXXXXSAILTDPNIMDSGPPSFLPLDLNTTTVAP 60

Query: 61  HRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCEIY 120
           HRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCEIY
Sbjct: 61  HRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCEIY 120

Query: 121 GIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVL 180
           GIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVL
Sbjct: 121 GIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVL 180

Query: 181 CM 183
           CM
Sbjct: 181 CM 182

[Close]

BLAST of CsaV3_1G009840 vs. TrEMBL
Match: tr|A0A1S3B0P8|A0A1S3B0P8_CUCME (protein TAPETUM DETERMINANT 1 OS=Cucumis melo OX=3656 GN=LOC103484600 PE=4 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 4.1e-79
Identity = 141/144 (97.92%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 39  NIMDSGPPSFLPLDLNTTTVAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPL 98
           NIMDS PPSFLPL+LNTTTVAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPL
Sbjct: 39  NIMDSSPPSFLPLNLNTTTVAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPL 98

Query: 99  PTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVY 158
           PTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVY
Sbjct: 99  PTGIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVY 158

Query: 159 GGTLSFQYANTYPYPLSVSSVLCM 183
           GGTLSFQYANTYPYPLSVSSVLC+
Sbjct: 159 GGTLSFQYANTYPYPLSVSSVLCI 182

[Close]

BLAST of CsaV3_1G009840 vs. TrEMBL
Match: tr|A0A067JIC3|A0A067JIC3_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_26409 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 6.0e-54
Identity = 99/126 (78.57%), Postives = 112/126 (88.89%), Query Frame = 0


Query: 56  TTVAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVT 115
           T  APHRK LL+R   +EEP RIWGEKCTK+DIVINQGPTAPLP+GIPTYTVE++N CVT
Sbjct: 46  TLSAPHRK-LLSRSLAMEEPNRIWGEKCTKADIVINQGPTAPLPSGIPTYTVEIMNVCVT 105

Query: 116 GCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYPLS 175
           GC+I GIH  CGWFSSA LINP++FKRLRY+DCLVNDGKPLV GGTLSF+YANT+ YPLS
Sbjct: 106 GCDISGIHLTCGWFSSARLINPKIFKRLRYNDCLVNDGKPLVNGGTLSFEYANTFHYPLS 165

Query: 176 VSSVLC 182
           VSSV+C
Sbjct: 166 VSSVIC 170

[Close]

BLAST of CsaV3_1G009840 vs. TrEMBL
Match: tr|A0A061FZR9|A0A061FZR9_THECC (Tapetum determinant 1 OS=Theobroma cacao OX=3641 GN=TCM_014700 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 3.9e-53
Identity = 98/128 (76.56%), Postives = 110/128 (85.94%), Query Frame = 0


Query: 54  NTTTVAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNAC 113
           + T   PHRKLL  R   +EEP RIWGEKCTK+DIVINQGPTAPLP+GIPTYTVE+VN C
Sbjct: 49  DNTLSTPHRKLL--RGMAVEEPNRIWGEKCTKADIVINQGPTAPLPSGIPTYTVEIVNVC 108

Query: 114 VTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYP 173
           VTGC+I GIH  CGWFSSA LINP++FKR+RY+DCLVNDGKPLV GGTLSFQYANT+ YP
Sbjct: 109 VTGCDISGIHLNCGWFSSARLINPKIFKRIRYNDCLVNDGKPLVNGGTLSFQYANTFLYP 168

Query: 174 LSVSSVLC 182
           LSVS V+C
Sbjct: 169 LSVSRVVC 174

[Close]

BLAST of CsaV3_1G009840 vs. TrEMBL
Match: tr|A0A1R3JXJ7|A0A1R3JXJ7_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_03820 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 5.1e-53
Identity = 98/128 (76.56%), Postives = 110/128 (85.94%), Query Frame = 0


Query: 54  NTTTVAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNAC 113
           N T   PHRKLLL   A +EEP RIWGEKC+K+DIVINQGPTAPLPTGIPTYTVE++N C
Sbjct: 51  NDTLTTPHRKLLL--GAAMEEPNRIWGEKCSKADIVINQGPTAPLPTGIPTYTVEIMNVC 110

Query: 114 VTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYP 173
           V+GC+I GIH  CGWFSSA LINP++FKRLRY+DC+VNDGKPLV GGTLSFQYANT+ YP
Sbjct: 111 VSGCDISGIHLSCGWFSSARLINPKIFKRLRYNDCIVNDGKPLVNGGTLSFQYANTFLYP 170

Query: 174 LSVSSVLC 182
           LSVS V C
Sbjct: 171 LSVSRVAC 176

The following BLAST results are available for this feature:

BLAST of CsaV3_1G009840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004153503.1	4.5e-85	100.00	PREDICTED: protein TAPETUM DETERMINANT 1 [Cucumis sativus] >XP_011652240.1 PREDI...	[more]
XP_008439976.1	6.2e-79	97.92	PREDICTED: protein TAPETUM DETERMINANT 1 [Cucumis melo] >XP_008439984.1 PREDICTE...	[more]
XP_022137731.1	8.4e-76	89.61	protein TAPETUM DETERMINANT 1-like isoform X1 [Momordica charantia] >XP_02213773...	[more]
XP_022923940.1	7.1e-75	90.26	protein TAPETUM DETERMINANT 1-like [Cucurbita moschata] >XP_022923941.1 protein ...	[more]
XP_022137736.1	1.0e-73	88.96	protein TAPETUM DETERMINANT 1-like isoform X2 [Momordica charantia]	[more]

BLAST of CsaV3_1G009840 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G24972.1	1.3e-41	60.71	tapetum determinant 1	[more]
AT1G32583.1	1.2e-39	57.04	FUNCTIONS IN: molecular_function unknown	[more]
AT1G05835.1	2.3e-06	38.89	PHD finger protein	[more]

BLAST of CsaV3_1G009840 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q6TLJ2\|TPD1_ARATH	2.3e-40	60.71	Protein TAPETUM DETERMINANT 1 OS=Arabidopsis thaliana OX=3702 GN=TPD1 PE=1 SV=1	[more]
sp\|Q1G3T1\|TDL1_ARATH	2.1e-38	57.04	TPD1 protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=TDL1 PE=2 SV=1	[more]
sp\|Q2QR54\|TDL1A_ORYSJ	9.0e-29	54.90	TPD1 protein homolog 1A OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1A PE=1 S...	[more]
sp\|Q8S6P9\|TDL1B_ORYSJ	5.7e-23	42.86	TPD1 protein homolog 1B OS=Oryza sativa subsp. japonica OX=39947 GN=TDL1B PE=2 S...	[more]
sp\|A8MS78\|Y1583_ARATH	4.1e-05	38.89	Uncharacterized protein At1g05835 OS=Arabidopsis thaliana OX=3702 GN=At1g05835 P...	[more]

BLAST of CsaV3_1G009840 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LUG9\|A0A0A0LUG9_CUCSA	3.0e-85	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G051700 PE=4 SV=1	[more]
tr\|A0A1S3B0P8\|A0A1S3B0P8_CUCME	4.1e-79	97.92	protein TAPETUM DETERMINANT 1 OS=Cucumis melo OX=3656 GN=LOC103484600 PE=4 SV=1	[more]
tr\|A0A067JIC3\|A0A067JIC3_JATCU	6.0e-54	78.57	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_26409 PE=4 SV=1	[more]
tr\|A0A061FZR9\|A0A061FZR9_THECC	3.9e-53	76.56	Tapetum determinant 1 OS=Theobroma cacao OX=3641 GN=TCM_014700 PE=4 SV=1	[more]
tr\|A0A1R3JXJ7\|A0A1R3JXJ7_COCAP	5.1e-53	76.56	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_03820 PE=4 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0048653	anther development
biological_process	GO:0001709	cell fate determination
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G009840.1	CsaV3_1G009840.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33184:SF2	PROTEIN TAPETUM DETERMINANT 1	coord: 19..181
None	No IPR available	PANTHER	PTHR33184	FAMILY NOT NAMED	coord: 19..181

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G009840	CSPI01G09780	Wild cucumber (PI 183967)	cpicucB001
CsaV3_1G009840	Cucsa.134810	Cucumber (Gy14) v1	cgycucB196
CsaV3_1G009840	CmaCh13G008230	Cucurbita maxima (Rimu)	cmacucB0235
CsaV3_1G009840	CmaCh18G003030	Cucurbita maxima (Rimu)	cmacucB0474
CsaV3_1G009840	CmoCh13G008540	Cucurbita moschata (Rifu)	cmocucB0222
CsaV3_1G009840	CmoCh18G002330	Cucurbita moschata (Rifu)	cmocucB0457
CsaV3_1G009840	Cp4.1LG09g09510	Cucurbita pepo (Zucchini)	cpecucB0031
CsaV3_1G009840	Cp4.1LG20g02950	Cucurbita pepo (Zucchini)	cpecucB0634
CsaV3_1G009840	CsGy1G009800	Cucumber (Gy14) v2	cgybcucB002
CsaV3_1G009840	Carg06810	Silver-seed gourd	carcucB0529
CsaV3_1G009840	Carg07616	Silver-seed gourd	carcucB1046
CsaV3_1G009840	Cla002639	Watermelon (97103) v1	cucwmB013
CsaV3_1G009840	MELO3C002379	Melon (DHL92) v3.5.1	cucmeB024
CsaV3_1G009840	ClCG03G003950	Watermelon (Charleston Gray)	cucwcgB038
CsaV3_1G009840	Lsi02G005220	Bottle gourd (USVL1VR-Ls)	cuclsiB022
CsaV3_1G009840	MELO3C002379.2	Melon (DHL92) v3.6.1	cucmedB022
CsaV3_1G009840	Cla97C03G055110	Watermelon (97103) v2	cucwmbB030
CsaV3_1G009840	Bhi08G001251	Wax gourd	cucwgoB035

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G009840	Cucumber (Gy14) v2	cgybcucB011
CsaV3_1G009840	Cucumber (Gy14) v1	cgycucB237
CsaV3_1G009840	Cucurbita maxima (Rimu)	cmacucB0078
CsaV3_1G009840	Cucurbita maxima (Rimu)	cmacucB0124
CsaV3_1G009840	Cucurbita moschata (Rifu)	cmocucB0066
CsaV3_1G009840	Cucurbita moschata (Rifu)	cmocucB0110
CsaV3_1G009840	Cucurbita pepo (Zucchini)	cpecucB0439
CsaV3_1G009840	Cucurbita pepo (Zucchini)	cpecucB0808
CsaV3_1G009840	Wild cucumber (PI 183967)	cpicucB015
CsaV3_1G009840	Bottle gourd (USVL1VR-Ls)	cuclsiB077
CsaV3_1G009840	Melon (DHL92) v3.5.1	cucmeB051
CsaV3_1G009840	Melon (DHL92) v3.6.1	cucmedB048
CsaV3_1G009840	Watermelon (Charleston Gray)	cucwcgB080
CsaV3_1G009840	Watermelon (97103) v1	cucwmB098
CsaV3_1G009840	Watermelon (97103) v2	cucwmbB071
CsaV3_1G009840	Wax gourd	cucwgoB001
CsaV3_1G009840	Cucumber (Chinese Long) v3	cuccucB003
CsaV3_1G009840	Silver-seed gourd	carcucB0397