CmaCh13G008230 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh13G008230
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Tapetum determinant 1
Location	Cma_Chr13 : 6900620 .. 6903707 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTTTTATTTTTTTTTTAAATTTTCCTCAACCTCCTTCTTCCTTTTTCCCTCCTCCGACATATTGCCGCCCATCGCCGCCGTCTGCGTTTCACTCTTCCCCATTCGTCTCGTCTCCTTCTGAAGCATTGTATATGTGTATGGATTTTCTTTCATAAATGCGTTCATACGAAACGAAGCGATGATATACACTTTTCTGAGGATCGTGGTGTTTTGTTATTTGCAGGTATACGCAATTTCCCTCTGTCATTTTTGTCTCTGCCGAGCTGATCTTTCTGCTCCATTTTCTTCCTCTCTCTTACTTTTCAGCCTCTCTCTCTCTCTCTCGCATGCATTTGAATCAATCCGTATTCTTCCTTTTTCTGTCTTTCATTCTTGTCCTTCTTCTTCCTCCGCCATAACTGCTACTTCTCTTGCACCGCAGCACGTTTCGTTTTCCTTCCATTTCTACGGATTACTGTCTTCGCTTTTTCCTGGTTTTTCATTTTCCTTGAGAATTGTACCGGCGGTTCCTCTTTTTCTCCTACGCCTTCTGAATTCCACCTCCTGCTTGTCGCATCATTAAAATCGCCTACGCCTACCTGTGGGGTAACTGCTAACGACAGTCTCAGACTCTGACCACCTTTCAGCCTGTATGACTCTCTAACGCCATGGTTCTTCCTTAAAGTCAACCAAGTTCTACCGATAGCTTGCTTTCGACGGCTCTTCTTTCTTTTGACTGATTGTATTTTAAATGCAATTTTCTCTGATGATGTGATGTTTTCATTCTTTTTCCAACGCAGGCTTTTTAATTTCTTCTCATCGTATTAATCTTCCGACTCCGACTCGTTCCATCCCTCAGATTTCTTTCCAGGTCTATAGAATTCCTATTATAAATGATGAAAGATTTGTCTACTACCAGGCGAGTATCGGTGATTTTCACTTCGGTTTTCTTCATCTTCTTTTTGGTATCTGCCATTCTTACAGGTCTGTATCATCGCTGGCACTTAATTCTTACTGCGTTTTGTTTTGATATACTCATACGTCGTCTTCTTCTATCTGGATATTTTATTTGTCCTTATATAACACTGTTCTCCTTTATCGTTTTGTGCTGCATATAGGAACAAAGATATTATTCTTGTTCTACTACTTTTTTACATCGTCCCCTTCCTTACATGATTGCAGATCTGGATATTATTCATTCCTTTATGGAACCGAGTCCGCCTAGTTTTCTTCGGATGGATTTGAAGAGCGCAATAGGTGCCCCTCATCGCAAGCTTCTCCTGACGAGTAAGTTTATGAATTCTGATTTCTCTTGTTTCGTAAATGCCAATACAAAATCGTTCAGAGGAAGGTTCGTTTCTGAGTTTGTTGTGCAAATTTTTATTTTAATAACCGTTTGATTCTTGTTTTGTATTGGAATTATGATCTCGGGGATGTTGGAAGGGAGAGATTGGTTACTCAATTGCATAAATGGTTGATTTGGTGTCAGAAATGCACGCCCGTCCATTCTTAGTAATGAGGTTAAGACACACCTTTTGCTGGATAGCTTTCCAGCTTCGGCTCTTTAACCTATATGGCCTTTCTGTAGCTGTTTTTGGAGATGTCTTCTTAAATAGATCCCATATACCCACCAGCCTTTGTTCCTCTTCTGTCGACGATTCATTGATTACATAAAAGCAACCTTTGGCCCGAAAGCGAGGAGCATTATAATGCCTTTCTGAGTTTTAGCTTTGTAGATTCTAATTGATTCATTGCTTTGACGACAAAGCTCTACAGTTGATGCGTGGACTCTCTTTAGTGGGATGGTTGGGGGTATAGTTTTATTAGTTCTAGAATTTTTCATATGGGCAAAGTATTAAATTTTATAATTTGTTGGGTCAAACAAATGAACAGAAATTTGAAAATGTCTCCGTGGATTTGTCTTTTTCAGACTCTCTTTACTCATTACCTCTCATCTATTGCCTTTGAATTTGCTTTATCTTATATAATTGATTGTTTATGCTTTCTCTACATATCTTTATGACTTCCCGAAAGTGTGTTTTGTGTGTCCAAAGACTTTTTCCCATTGGGAGGTCGATATTTATTTATAAGAGTGATGTTTGCACGTGGGTGGTGCGTCGAACATTGATCAATATACAATGACAACAGATGACATGGACCTGTTTCTTTATTTGAATGTGCTTTAGGAGAAGCAACAATTGAGGAACCAACCAGAATTTGGGGTGAAAAGTGCACAAAATCAGACATAGTGATTAACCAAGGCCCCACAGCTCCACTTCCAACTGGTATCCCCACCTACACTGTTGAAGTGGTGAACGCTTGTGTCACTGGTTGTGATATCTATGGAATTCACTTCAAATGCGGCTGGTTCAGCTCAGCTCATCTCATCAACCCCAGAGTCTTCAAGCGCCTTCATTACGATGACTGCCTCGTGAATGACGGCAAGCCTCTTGTCTACGGCGGTACACTCTCTTTTCAGTATGCAAACACTTACCCTTACCCGCTTTCAGTCTCCTCAGTTGTCTGCAAACTGAAATGACACGGTCCAAAGCAACTAGGAGACGCTCATATGAAGCACTTGAAGCACTTGAAGCAGCAGCACAGCAGCAGGTACTTTAGTCTATTACTGATTGACGATGGCCCCCCAACCTGCCTTTTCTTTTCCTTTTCATTTTTTGGGTTCTGCTTTTGCTTTATATGCGTGTGGATTATGGGGATTTGTTGTTTTCTTTTTCTGTTCCTATGATTTTTCGTTGGGTTCAAGTGAGGTCGGATTTTTAGTGTTAGCTTGAGGTTGGAAAGGGAGGAGTTGTGGATTAATAATGGTCATGACACCAACTTTGCATATACATAGATGGAGGATAGGGAAGAGTTGCTAGGAACGTACTTCATTTTAATATTCTTTTGGGGATAAGTGAGATGGGCATCGAGGGCAGGAAGGCCAAGTGTATACATATATAGTTAGTTATATACAACTGATAGTACTGTGTTCGTGTGACAAAGTTCAGGAGATTTAAAAGCCATTATGTGCAGAATATTTCTGTGTGTGTATGCTTACAAATTAATGACCCTCTGTAGGCTATGATCTATCAAAATATAGAAAGAAG

mRNA sequence

TCTTTTTATTTTTTTTTTAAATTTTCCTCAACCTCCTTCTTCCTTTTTCCCTCCTCCGACATATTGCCGCCCATCGCCGCCGTCTGCGTTTCACTCTTCCCCATTCGTCTCGTCTCCTTCTGAAGCATTGTATATGTGTATACGCAATTTCCCTCTGTCATTTTTGTCTCTGCCGAGCTGATCTTTCTGCTCCATTTTCTTCCTCTCTCTTACTTTTCAGCCTCTCTCTCTCTCTCTCGCATGCATTTGAATCAATCCGTATTCTTCCTTTTTCTGTCTTTCATTCTTGTCCTTCTTCTTCCTCCGCCATAACTGCTACTTCTCTTGCACCGCAGCACGTTTCGTTTTCCTTCCATTTCTACGGATTACTGTCTTCGCTTTTTCCTGGTTTTTCATTTTCCTTGAGAATTGTACCGGCGGTTCCTCTTTTTCTCCTACGCCTTCTGAATTCCACCTCCTGCTTGTCGCATCATTAAAATCGCCTACGCCTACCTGTGGGGTAACTGCTAACGACAGTCTCAGACTCTGACCACCTTTCAGCCTGCTTTTTAATTTCTTCTCATCGTATTAATCTTCCGACTCCGACTCGTTCCATCCCTCAGATTTCTTTCCAGGTCTATAGAATTCCTATTATAAATGATGAAAGATTTGTCTACTACCAGGCGAGTATCGGTGATTTTCACTTCGGTTTTCTTCATCTTCTTTTTGGTATCTGCCATTCTTACAGATCTGGATATTATTCATTCCTTTATGGAACCGAGTCCGCCTAGTTTTCTTCGGATGGATTTGAAGAGCGCAATAGGTGCCCCTCATCGCAAGCTTCTCCTGACGAGAGAAGCAACAATTGAGGAACCAACCAGAATTTGGGGTGAAAAGTGCACAAAATCAGACATAGTGATTAACCAAGGCCCCACAGCTCCACTTCCAACTGGTATCCCCACCTACACTGTTGAAGTGGTGAACGCTTGTGTCACTGGTTGTGATATCTATGGAATTCACTTCAAATGCGGCTGGTTCAGCTCAGCTCATCTCATCAACCCCAGAGTCTTCAAGCGCCTTCATTACGATGACTGCCTCGTGAATGACGGCAAGCCTCTTGTCTACGGCGGTACACTCTCTTTTCAGTATGCAAACACTTACCCTTACCCGCTTTCAGTCTCCTCAGTTGTCTGCAAACTGAAATGACACGGTCCAAAGCAACTAGGAGACGCTCATATGAAGCACTTGAAGCACTTGAAGCAGCAGCACAGCAGCAGGTACTTTAGTCTATTACTGATTGACGATGGCCCCCCAACCTGCCTTTTCTTTTCCTTTTCATTTTTTGGGTTCTGCTTTTGCTTTATATGCGTGTGGATTATGGGGATTTGTTGTTTTCTTTTTCTGTTCCTATGATTTTTCGTTGGGTTCAAGTGAGGTCGGATTTTTAGTGTTAGCTTGAGGTTGGAAAGGGAGGAGTTGTGGATTAATAATGGTCATGACACCAACTTTGCATATACATAGATGGAGGATAGGGAAGAGTTGCTAGGAACGTACTTCATTTTAATATTCTTTTGGGGATAAGTGAGATGGGCATCGAGGGCAGGAAGGCCAAGTGTATACATATATAGTTAGTTATATACAACTGATAGTACTGTGTTCGTGTGACAAAGTTCAGGAGATTTAAAAGCCATTATGTGCAGAATATTTCTGTGTGTGTATGCTTACAAATTAATGACCCTCTGTAGGCTATGATCTATCAAAATATAGAAAGAAG

Coding sequence (CDS)

ATGATGAAAGATTTGTCTACTACCAGGCGAGTATCGGTGATTTTCACTTCGGTTTTCTTCATCTTCTTTTTGGTATCTGCCATTCTTACAGATCTGGATATTATTCATTCCTTTATGGAACCGAGTCCGCCTAGTTTTCTTCGGATGGATTTGAAGAGCGCAATAGGTGCCCCTCATCGCAAGCTTCTCCTGACGAGAGAAGCAACAATTGAGGAACCAACCAGAATTTGGGGTGAAAAGTGCACAAAATCAGACATAGTGATTAACCAAGGCCCCACAGCTCCACTTCCAACTGGTATCCCCACCTACACTGTTGAAGTGGTGAACGCTTGTGTCACTGGTTGTGATATCTATGGAATTCACTTCAAATGCGGCTGGTTCAGCTCAGCTCATCTCATCAACCCCAGAGTCTTCAAGCGCCTTCATTACGATGACTGCCTCGTGAATGACGGCAAGCCTCTTGTCTACGGCGGTACACTCTCTTTTCAGTATGCAAACACTTACCCTTACCCGCTTTCAGTCTCCTCAGTTGTCTGCAAACTGAAATGA

Protein sequence

MMKDLSTTRRVSVIFTSVFFIFFLVSAILTDLDIIHSFMEPSPPSFLRMDLKSAIGAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYGIHFKCGWFSSAHLINPRVFKRLHYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVVCKLK

Homology

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BLAST of CmaCh13G008230 vs. Swiss-Prot
Match: TPD1_ARATH (Protein TAPETUM DETERMINANT 1 OS=Arabidopsis thaliana GN=TPD1 PE=1 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.2e-40
Identity = 79/126 (62.70%), Postives = 92/126 (73.02%), Query Frame = 1


Query: 59  HRKLLLTREATIE-----EPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVT 118
           HRK+LL    T +     EP RI GEKC  +DIV+NQ  T P+P GIP Y VE+ N C++
Sbjct: 51  HRKMLLLSPGTGKTERSVEPERI-GEKCKSTDIVVNQAVTEPMPNGIPGYMVEITNQCMS 110

Query: 119 GCDIYGIHFKCGWFSSAHLINPRVFKRLHYDDCLVNDGKPLVYGGTLSFQYANTYPYPLS 178
           GC I  IH  CGWFSSA LINPRVFKR+HYDDCLVN+GKPL +G TLSF YANT+PY LS
Sbjct: 111 GCIISRIHINCGWFSSAKLINPRVFKRIHYDDCLVNNGKPLPFGSTLSFHYANTFPYHLS 170

Query: 179 VSSVVC 180
           V+ V C
Sbjct: 171 VAFVTC 175

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BLAST of CmaCh13G008230 vs. Swiss-Prot
Match: TDL1_ARATH (TPD1 protein homolog 1 OS=Arabidopsis thaliana GN=TDL1 PE=2 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.5e-36
Identity = 82/179 (45.81%), Postives = 115/179 (64.25%), Query Frame = 1


Query: 10  RVSVIFTSVFFIFFLVSAILTDLDI---IHSFMEPSPPSFLRMDLKSAIG------APHR 69
           R+  I+    ++FF+   +L  L +    + F   +    + +  +S +       A  R
Sbjct: 2   RMEHIYKFQHWLFFIGLGVLLSLSLSVKANDFEGSNDRRSIALKARSFVSINENRTALSR 61

Query: 70  KLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYGI 129
           KLLL+ +  I + T   G+ C+K DIV+ QG T PLP+G+P+YTVE+ N+CV+ C+I  I
Sbjct: 62  KLLLSPD--IGDGTNRIGQDCSKDDIVLFQGSTNPLPSGVPSYTVEIFNSCVSDCNIAEI 121

Query: 130 HFKCGWFSSAHLINPRVFKRLHYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVVC 180
           H  CGWFSS  L+NPRVF+RL YDDCLVNDG+PL  G +LSFQYAN++ YPLSV+SV C
Sbjct: 122 HVSCGWFSSVRLVNPRVFRRLDYDDCLVNDGQPLGPGQSLSFQYANSFSYPLSVASVSC 178

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BLAST of CmaCh13G008230 vs. Swiss-Prot
Match: TDL1A_ORYSJ (TPD1 protein homolog 1A OS=Oryza sativa subsp. japonica GN=TDL1A PE=1 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 3.0e-29
Identity = 57/101 (56.44%), Postives = 73/101 (72.28%), Query Frame = 1


Query: 85  DIVINQGPTAPLPTGIPTYTVEVVNACVTG------CDIYGIHFKCGWFSSAHLINPRVF 144
           DI I QG   PLP+G+P YTV+V+N C  G      C I GIH +CGWFSS  L++PRVF
Sbjct: 119 DIAIYQGRATPLPSGVPAYTVDVMNRCAGGGGGDEECAIAGIHVRCGWFSSVSLVDPRVF 178

Query: 145 KRLHYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVVC 180
           +RL +DDCL+NDG+PL+ G T+SF+Y N++PY LSVS   C
Sbjct: 179 RRLGHDDCLLNDGRPLLAGETVSFEYTNSFPYKLSVSVATC 219

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BLAST of CmaCh13G008230 vs. Swiss-Prot
Match: TDL1B_ORYSJ (TPD1 protein homolog 1B OS=Oryza sativa subsp. japonica GN=TDL1B PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 4.2e-23
Identity = 45/106 (42.45%), Postives = 73/106 (68.87%), Query Frame = 1


Query: 75  RIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYGIHFKCGWFSSAHLIN 134
           R+  + C++ ++V+ Q     LP+GIPTY+VE++N C T C +Y +H  CG F+SA L++
Sbjct: 65  RMQPDSCSEQNVVVYQNNAEHLPSGIPTYSVEIINVC-TACTVYDVHISCGEFASAELVD 124

Query: 135 PRVFKRLHYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVVCK 181
           P  F+R+ ++DCLV  G  L     +SFQY+N++ YPL+V++V C+
Sbjct: 125 PSQFQRIGFNDCLVKGGGRLGPSEAVSFQYSNSFAYPLAVANVACE 169

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BLAST of CmaCh13G008230 vs. TrEMBL
Match: A0A0A0LUG9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G051700 PE=4 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 1.4e-81
Identity = 155/185 (83.78%), Postives = 162/185 (87.57%), Query Frame = 1


Query: 1   MMKDLSTT------RRVSVIFTSVFFIFFLVSAILTDLDIIHSFMEPSPPSFLRMDLKSA 60
           MMK+LSTT      RRVSVIF  V FIFF VSAILTD +I    M+  PPSFL +DL + 
Sbjct: 1   MMKELSTTTTTTTTRRVSVIFALVLFIFFFVSAILTDPNI----MDSGPPSFLPLDLNTT 60

Query: 61  IGAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTG 120
             APHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTG
Sbjct: 61  TVAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTG 120

Query: 121 CDIYGIHFKCGWFSSAHLINPRVFKRLHYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSV 180
           C+IYGIHFKCGWFSSAHLINPRVFKRL YDDCLVNDGKPLVYGGTLSFQYANTYPYPLSV
Sbjct: 121 CEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSV 180

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BLAST of CmaCh13G008230 vs. TrEMBL
Match: A0A067JIC3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26409 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 1.1e-54
Identity = 109/178 (61.24%), Postives = 128/178 (71.91%), Query Frame = 1


Query: 2   MKDLSTTRRVSVIFTSVFFIFFLVSAILTDLDIIHSFMEPSPPSFLRMDLKSAIGAPHRK 61
           M+D S  R   V+   +F +   +    T       FM  S P  +       + APHRK
Sbjct: 1   MRDFSKNRLAVVLLLFLFTVLTFMPPFFTG-----GFMGSSHP--ISKGTSYTLSAPHRK 60

Query: 62  LLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYGIH 121
           LL +R   +EEP RIWGEKCTK+DIVINQGPTAPLP+GIPTYTVE++N CVTGCDI GIH
Sbjct: 61  LL-SRSLAMEEPNRIWGEKCTKADIVINQGPTAPLPSGIPTYTVEIMNVCVTGCDISGIH 120

Query: 122 FKCGWFSSAHLINPRVFKRLHYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVVC 180
             CGWFSSA LINP++FKRL Y+DCLVNDGKPLV GGTLSF+YANT+ YPLSVSSV+C
Sbjct: 121 LTCGWFSSARLINPKIFKRLRYNDCLVNDGKPLVNGGTLSFEYANTFHYPLSVSSVIC 170

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BLAST of CmaCh13G008230 vs. TrEMBL
Match: A0A061FZR9_THECC (Tapetum determinant 1 OS=Theobroma cacao GN=TCM_014700 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 7.2e-54
Identity = 101/136 (74.26%), Postives = 114/136 (83.82%), Query Frame = 1


Query: 47  LRMDLK---SAIGAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTY 106
           LR+ +K   + +  PHRKLL  R   +EEP RIWGEKCTK+DIVINQGPTAPLP+GIPTY
Sbjct: 41  LRLRIKQWDNTLSTPHRKLL--RGMAVEEPNRIWGEKCTKADIVINQGPTAPLPSGIPTY 100

Query: 107 TVEVVNACVTGCDIYGIHFKCGWFSSAHLINPRVFKRLHYDDCLVNDGKPLVYGGTLSFQ 166
           TVE+VN CVTGCDI GIH  CGWFSSA LINP++FKR+ Y+DCLVNDGKPLV GGTLSFQ
Sbjct: 101 TVEIVNVCVTGCDISGIHLNCGWFSSARLINPKIFKRIRYNDCLVNDGKPLVNGGTLSFQ 160

Query: 167 YANTYPYPLSVSSVVC 180
           YANT+ YPLSVS VVC
Sbjct: 161 YANTFLYPLSVSRVVC 174

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BLAST of CmaCh13G008230 vs. TrEMBL
Match: K4BJH0_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 3.0e-52
Identity = 113/187 (60.43%), Postives = 129/187 (68.98%), Query Frame = 1


Query: 2   MKDLSTTRRVSVIFTSVFFIFFLVSAI----LTDLDIIHSFMEPSPPSFLRMDLKSAIGA 61
           M   S  RR  +   SV F FFL+  I     T + I  +FM          D  SAI  
Sbjct: 1   MSSQSLKRRTRISLISVVFAFFLLFIIGPEFFTGILIGPNFMA---------DANSAITG 60

Query: 62  -----PHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACV 121
                PHRKLL   +    E TRIWG+KC+KSDIVINQGPTAPLP+GIPTYTVE++N CV
Sbjct: 61  NTNVGPHRKLL--NQGNEVETTRIWGDKCSKSDIVINQGPTAPLPSGIPTYTVEIMNVCV 120

Query: 122 TGCDIYGIHFKCGWFSSAHLINPRVFKRLHYDDCLVNDGKPLVYGGTLSFQYANTYPYPL 180
           +GCDI GIH  CGWFSSA LINPR+FKRLH+DDCLVNDGKPL+ G T+SFQYANT+ YPL
Sbjct: 121 SGCDISGIHLSCGWFSSARLINPRIFKRLHFDDCLVNDGKPLINGHTISFQYANTFRYPL 176

[Close]

BLAST of CmaCh13G008230 vs. TrEMBL
Match: A0A103YBQ4_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_015500 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 5.2e-52
Identity = 106/187 (56.68%), Postives = 132/187 (70.59%), Query Frame = 1


Query: 1   MMKDLSTTRRVSVIFT--SVFFIFFLVSAILTDLDIIHSFMEPSPPSFLRMDLKSA---- 60
           M  +LS+ R ++++    SV  +   V A +T L      M   P S L+ D +S     
Sbjct: 1   MKTELSSRRHIALVMEKISVLLLMITVIAFVTGLRQYGRLMVEHPSSTLK-DAESTNLDG 60

Query: 61  --IGAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACV 120
             +  P+RKLLL+ EA   +P RIWG+KC+KSDI+INQGPT+PLP+GIP Y VE+VN C 
Sbjct: 61  VKVSGPNRKLLLSHEAAKVQPNRIWGDKCSKSDIIINQGPTSPLPSGIPMYMVEIVNMCT 120

Query: 121 TGCDIYGIHFKCGWFSSAHLINPRVFKRLHYDDCLVNDGKPLVYGGTLSFQYANTYPYPL 180
           TGCDI  IH  CGWFSSA LINPR+FKRL YDDCLVN+GKPLV G T+SFQYANT+PYPL
Sbjct: 121 TGCDISNIHLSCGWFSSARLINPRLFKRLDYDDCLVNNGKPLVNGHTISFQYANTFPYPL 180

[Close]

BLAST of CmaCh13G008230 vs. TAIR10
Match: AT4G24972.1 (AT4G24972.1 tapetum determinant 1)

HSP 1 Score: 166.8 bits (421), Expect = 1.3e-41
Identity = 79/126 (62.70%), Postives = 92/126 (73.02%), Query Frame = 1


Query: 59  HRKLLLTREATIE-----EPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVT 118
           HRK+LL    T +     EP RI GEKC  +DIV+NQ  T P+P GIP Y VE+ N C++
Sbjct: 51  HRKMLLLSPGTGKTERSVEPERI-GEKCKSTDIVVNQAVTEPMPNGIPGYMVEITNQCMS 110

Query: 119 GCDIYGIHFKCGWFSSAHLINPRVFKRLHYDDCLVNDGKPLVYGGTLSFQYANTYPYPLS 178
           GC I  IH  CGWFSSA LINPRVFKR+HYDDCLVN+GKPL +G TLSF YANT+PY LS
Sbjct: 111 GCIISRIHINCGWFSSAKLINPRVFKRIHYDDCLVNNGKPLPFGSTLSFHYANTFPYHLS 170

Query: 179 VSSVVC 180
           V+ V C
Sbjct: 171 VAFVTC 175

[Close]

BLAST of CmaCh13G008230 vs. TAIR10
Match: AT1G32583.1 (AT1G32583.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 154.1 bits (388), Expect = 8.5e-38
Identity = 82/179 (45.81%), Postives = 115/179 (64.25%), Query Frame = 1


Query: 10  RVSVIFTSVFFIFFLVSAILTDLDI---IHSFMEPSPPSFLRMDLKSAIG------APHR 69
           R+  I+    ++FF+   +L  L +    + F   +    + +  +S +       A  R
Sbjct: 2   RMEHIYKFQHWLFFIGLGVLLSLSLSVKANDFEGSNDRRSIALKARSFVSINENRTALSR 61

Query: 70  KLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYGI 129
           KLLL+ +  I + T   G+ C+K DIV+ QG T PLP+G+P+YTVE+ N+CV+ C+I  I
Sbjct: 62  KLLLSPD--IGDGTNRIGQDCSKDDIVLFQGSTNPLPSGVPSYTVEIFNSCVSDCNIAEI 121

Query: 130 HFKCGWFSSAHLINPRVFKRLHYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVVC 180
           H  CGWFSS  L+NPRVF+RL YDDCLVNDG+PL  G +LSFQYAN++ YPLSV+SV C
Sbjct: 122 HVSCGWFSSVRLVNPRVFRRLDYDDCLVNDGQPLGPGQSLSFQYANSFSYPLSVASVSC 178

[Close]

BLAST of CmaCh13G008230 vs. TAIR10
Match: AT1G05835.1 (AT1G05835.1 PHD finger protein)

HSP 1 Score: 49.3 bits (116), Expect = 2.9e-06
Identity = 28/72 (38.89%), Postives = 40/72 (55.56%), Query Frame = 1


Query: 103 YTVEVVNACVTGCDIYGIHFKCGWFSSAHLINPRVFKRLHYD--DCLVNDGKPLVYGGTL 162
           + VEV+N C   C I  +  KC  F  + L++P   + L     +C+VNDG PL    TL
Sbjct: 48  FRVEVMNKCPM-CPIINLRLKCQGFPQS-LVDPTFLRVLSSSAGNCVVNDGLPLSPMQTL 107

Query: 163 SFQYANTYPYPL 173
           SF Y+NT+ + L
Sbjct: 108 SFNYSNTHQFAL 117

[Close]

BLAST of CmaCh13G008230 vs. NCBI nr
Match: gi|449472127|ref|XP_004153503.1| (PREDICTED: protein TAPETUM DETERMINANT 1 [Cucumis sativus])

HSP 1 Score: 310.5 bits (794), Expect = 2.0e-81
Identity = 155/185 (83.78%), Postives = 162/185 (87.57%), Query Frame = 1


Query: 1   MMKDLSTT------RRVSVIFTSVFFIFFLVSAILTDLDIIHSFMEPSPPSFLRMDLKSA 60
           MMK+LSTT      RRVSVIF  V FIFF VSAILTD +I    M+  PPSFL +DL + 
Sbjct: 1   MMKELSTTTTTTTTRRVSVIFALVLFIFFFVSAILTDPNI----MDSGPPSFLPLDLNTT 60

Query: 61  IGAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTG 120
             APHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTG
Sbjct: 61  TVAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTG 120

Query: 121 CDIYGIHFKCGWFSSAHLINPRVFKRLHYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSV 180
           C+IYGIHFKCGWFSSAHLINPRVFKRL YDDCLVNDGKPLVYGGTLSFQYANTYPYPLSV
Sbjct: 121 CEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSV 180

[Close]

BLAST of CmaCh13G008230 vs. NCBI nr
Match: gi|659067542|ref|XP_008439976.1| (PREDICTED: uncharacterized protein LOC103484600 [Cucumis melo])

HSP 1 Score: 308.5 bits (789), Expect = 7.6e-81
Identity = 152/185 (82.16%), Postives = 163/185 (88.11%), Query Frame = 1


Query: 1   MMKDLSTT------RRVSVIFTSVFFIFFLVSAILTDLDIIHSFMEPSPPSFLRMDLKSA 60
           MMK+LSTT      RRVSVIF  V F+FF +SA+LTD +I    M+ SPPSFL ++L + 
Sbjct: 1   MMKELSTTTTTTTTRRVSVIFALVIFVFFFLSAVLTDSNI----MDSSPPSFLPLNLNTT 60

Query: 61  IGAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTG 120
             APHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTG
Sbjct: 61  TVAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTG 120

Query: 121 CDIYGIHFKCGWFSSAHLINPRVFKRLHYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSV 180
           C+IYGIHFKCGWFSSAHLINPRVFKRL YDDCLVNDGKPLVYGGTLSFQYANTYPYPLSV
Sbjct: 121 CEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSV 180

[Close]

BLAST of CmaCh13G008230 vs. NCBI nr
Match: gi|802770527|ref|XP_012090642.1| (PREDICTED: protein TAPETUM DETERMINANT 1-like [Jatropha curcas])

HSP 1 Score: 221.1 bits (562), Expect = 1.6e-54
Identity = 109/178 (61.24%), Postives = 128/178 (71.91%), Query Frame = 1


Query: 2   MKDLSTTRRVSVIFTSVFFIFFLVSAILTDLDIIHSFMEPSPPSFLRMDLKSAIGAPHRK 61
           M+D S  R   V+   +F +   +    T       FM  S P  +       + APHRK
Sbjct: 1   MRDFSKNRLAVVLLLFLFTVLTFMPPFFTG-----GFMGSSHP--ISKGTSYTLSAPHRK 60

Query: 62  LLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYGIH 121
           LL +R   +EEP RIWGEKCTK+DIVINQGPTAPLP+GIPTYTVE++N CVTGCDI GIH
Sbjct: 61  LL-SRSLAMEEPNRIWGEKCTKADIVINQGPTAPLPSGIPTYTVEIMNVCVTGCDISGIH 120

Query: 122 FKCGWFSSAHLINPRVFKRLHYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVVC 180
             CGWFSSA LINP++FKRL Y+DCLVNDGKPLV GGTLSF+YANT+ YPLSVSSV+C
Sbjct: 121 LTCGWFSSARLINPKIFKRLRYNDCLVNDGKPLVNGGTLSFEYANTFHYPLSVSSVIC 170

[Close]

BLAST of CmaCh13G008230 vs. NCBI nr
Match: gi|590670477|ref|XP_007038067.1| (Tapetum determinant 1 [Theobroma cacao])

HSP 1 Score: 218.4 bits (555), Expect = 1.0e-53
Identity = 101/136 (74.26%), Postives = 114/136 (83.82%), Query Frame = 1


Query: 47  LRMDLK---SAIGAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTY 106
           LR+ +K   + +  PHRKLL  R   +EEP RIWGEKCTK+DIVINQGPTAPLP+GIPTY
Sbjct: 41  LRLRIKQWDNTLSTPHRKLL--RGMAVEEPNRIWGEKCTKADIVINQGPTAPLPSGIPTY 100

Query: 107 TVEVVNACVTGCDIYGIHFKCGWFSSAHLINPRVFKRLHYDDCLVNDGKPLVYGGTLSFQ 166
           TVE+VN CVTGCDI GIH  CGWFSSA LINP++FKR+ Y+DCLVNDGKPLV GGTLSFQ
Sbjct: 101 TVEIVNVCVTGCDISGIHLNCGWFSSARLINPKIFKRIRYNDCLVNDGKPLVNGGTLSFQ 160

Query: 167 YANTYPYPLSVSSVVC 180
           YANT+ YPLSVS VVC
Sbjct: 161 YANTFLYPLSVSRVVC 174

[Close]

BLAST of CmaCh13G008230 vs. NCBI nr
Match: gi|1009169756|ref|XP_015865836.1| (PREDICTED: TPD1 protein homolog 1-like, partial [Ziziphus jujuba])

HSP 1 Score: 215.7 bits (548), Expect = 6.7e-53
Identity = 95/118 (80.51%), Postives = 107/118 (90.68%), Query Frame = 1


Query: 62  LLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYGIH 121
           +L T +A +E+P RIWGEKCTKSDIVINQGPT PLP+GIPTYTVE++N CVTGCDIYGIH
Sbjct: 6   VLYTAKA-VEQPDRIWGEKCTKSDIVINQGPTGPLPSGIPTYTVEIMNVCVTGCDIYGIH 65

Query: 122 FKCGWFSSAHLINPRVFKRLHYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVVC 180
             CGWFSSAHL+NP+VFKRL YDDCLVNDGKPL+ GGTLSFQYANT+ YPLSVSSV+C
Sbjct: 66  LSCGWFSSAHLVNPKVFKRLRYDDCLVNDGKPLINGGTLSFQYANTFLYPLSVSSVIC 122

The following BLAST results are available for this feature:

BLAST of CmaCh13G008230 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TPD1_ARATH	2.2e-40	62.70	Protein TAPETUM DETERMINANT 1 OS=Arabidopsis thaliana GN=TPD1 PE=1 SV=1	[more]
TDL1_ARATH	1.5e-36	45.81	TPD1 protein homolog 1 OS=Arabidopsis thaliana GN=TDL1 PE=2 SV=1	[more]
TDL1A_ORYSJ	3.0e-29	56.44	TPD1 protein homolog 1A OS=Oryza sativa subsp. japonica GN=TDL1A PE=1 SV=1	[more]
TDL1B_ORYSJ	4.2e-23	42.45	TPD1 protein homolog 1B OS=Oryza sativa subsp. japonica GN=TDL1B PE=2 SV=1	[more]

BLAST of CmaCh13G008230 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUG9_CUCSA	1.4e-81	83.78	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G051700 PE=4 SV=1	[more]
A0A067JIC3_JATCU	1.1e-54	61.24	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26409 PE=4 SV=1	[more]
A0A061FZR9_THECC	7.2e-54	74.26	Tapetum determinant 1 OS=Theobroma cacao GN=TCM_014700 PE=4 SV=1	[more]
K4BJH0_SOLLC	3.0e-52	60.43	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
A0A103YBQ4_CYNCS	5.2e-52	56.68	Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_015500 PE=4 ...	[more]

BLAST of CmaCh13G008230 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G24972.1	1.3e-41	62.70	tapetum determinant 1	[more]
AT1G32583.1	8.5e-38	45.81	FUNCTIONS IN: molecular_function unknown	[more]
AT1G05835.1	2.9e-06	38.89	PHD finger protein	[more]

BLAST of CmaCh13G008230 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449472127\|ref\|XP_004153503.1\|	2.0e-81	83.78	PREDICTED: protein TAPETUM DETERMINANT 1 [Cucumis sativus]	[more]
gi\|659067542\|ref\|XP_008439976.1\|	7.6e-81	82.16	PREDICTED: uncharacterized protein LOC103484600 [Cucumis melo]	[more]
gi\|802770527\|ref\|XP_012090642.1\|	1.6e-54	61.24	PREDICTED: protein TAPETUM DETERMINANT 1-like [Jatropha curcas]	[more]
gi\|590670477\|ref\|XP_007038067.1\|	1.0e-53	74.26	Tapetum determinant 1 [Theobroma cacao]	[more]
gi\|1009169756\|ref\|XP_015865836.1\|	6.7e-53	80.51	PREDICTED: TPD1 protein homolog 1-like, partial [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048653	anther development
biological_process	GO:0001709	cell fate determination
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh13G008230.1	CmaCh13G008230.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33184	FAMILY NOT NAMED	coord: 58..179 score: 9.3
None	No IPR available	PANTHER	PTHR33184:SF2	TPD1	coord: 58..179 score: 9.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh13G008230	Cucsa.134810	Cucumber (Gy14) v1	cgycmaB0366
CmaCh13G008230	Cla002639	Watermelon (97103) v1	cmawmB187
CmaCh13G008230	Csa1G051700	Cucumber (Chinese Long) v2	cmacuB204
CmaCh13G008230	MELO3C002379	Melon (DHL92) v3.5.1	cmameB197
CmaCh13G008230	ClCG03G003950	Watermelon (Charleston Gray)	cmawcgB196
CmaCh13G008230	CSPI01G09780	Wild cucumber (PI 183967)	cmacpiB206
CmaCh13G008230	CmoCh18G002330	Cucurbita moschata (Rifu)	cmacmoB219
CmaCh13G008230	CmoCh13G008540	Cucurbita moschata (Rifu)	cmacmoB218
CmaCh13G008230	Lsi02G005220	Bottle gourd (USVL1VR-Ls)	cmalsiB202
CmaCh13G008230	Cp4.1LG09g09510	Cucurbita pepo (Zucchini)	cmacpeB214
CmaCh13G008230	Cp4.1LG20g02950	Cucurbita pepo (Zucchini)	cmacpeB234
CmaCh13G008230	MELO3C002379.2	Melon (DHL92) v3.6.1	cmamedB218
CmaCh13G008230	CsaV3_1G009840	Cucumber (Chinese Long) v3	cmacucB0235
CmaCh13G008230	Cla97C03G055110	Watermelon (97103) v2	cmawmbB227
CmaCh13G008230	Bhi08G001251	Wax gourd	cmawgoB0256
CmaCh13G008230	CsGy1G009800	Cucumber (Gy14) v2	cgybcmaB063
CmaCh13G008230	Carg07616	Silver-seed gourd	carcmaB1393
CmaCh13G008230	Carg06810	Silver-seed gourd	carcmaB0689

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh13G008230	CmaCh18G003030	Cucurbita maxima (Rimu)	cmacmaB218

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh13G008230	Wax gourd	cmawgoB0237
CmaCh13G008230	Cucurbita maxima (Rimu)	cmacmaB092
CmaCh13G008230	Cucurbita maxima (Rimu)	cmacmaB128
CmaCh13G008230	Cucumber (Gy14) v1	cgycmaB0435
CmaCh13G008230	Cucurbita moschata (Rifu)	cmacmoB212
CmaCh13G008230	Cucurbita moschata (Rifu)	cmacmoB216
CmaCh13G008230	Wild cucumber (PI 183967)	cmacpiB227
CmaCh13G008230	Cucumber (Chinese Long) v2	cmacuB225
CmaCh13G008230	Melon (DHL92) v3.5.1	cmameB208
CmaCh13G008230	Watermelon (Charleston Gray)	cmawcgB209
CmaCh13G008230	Watermelon (97103) v1	cmawmB215
CmaCh13G008230	Cucurbita pepo (Zucchini)	cmacpeB227
CmaCh13G008230	Cucurbita pepo (Zucchini)	cmacpeB247
CmaCh13G008230	Bottle gourd (USVL1VR-Ls)	cmalsiB219
CmaCh13G008230	Cucumber (Gy14) v2	cgybcmaB081
CmaCh13G008230	Melon (DHL92) v3.6.1	cmamedB209
CmaCh13G008230	Melon (DHL92) v3.6.1	cmamedB228
CmaCh13G008230	Silver-seed gourd	carcmaB0515
CmaCh13G008230	Cucumber (Chinese Long) v3	cmacucB0256
CmaCh13G008230	Cucumber (Chinese Long) v3	cmacucB0267
CmaCh13G008230	Watermelon (97103) v2	cmawmbB241