CmaCh18G003030 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh18G003030
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Tapetum determinant 1
Location	Cma_Chr18 : 1612595 .. 1614527 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACTCGAGTCCACCGAGTTTTCTTCGATCGGGTTTAAGGAGCACAAGAGTTACCCCTCGTCGCAAACTCCTTACTAGTAAGTTTTTGAAATCTGATCTAATCGTGTTTCGTAAACGTCGGTACAAAATCGTTGACGGAGGACTAGAATTCTGAGTTTGTTGCGCTGTTTTTTGTCTTCTCTCTTTTTGTTTTCACTATTCGTTTGATTTTTGCTTTATTTTGAAATAATGATCTCGGGGTTGGGGGTAGGGAGAGATTGGCTACTCAATTGCATAAATGGTTGATTTGGTGTCAGAATTACACGCCCGTCCATTCTTAGTAATGAAGCTAAGGCGCACCTTTTGCTAGGTAGCTTTCCAGCCCTTCGGCTCTTTAACCCATATGGCCTTTCTGTATCTGTTTTTGGGGAAATCTTCTTTCATAGATCCCTGATACCCATCAGGCTTTCTTCCTGTTCTGTCCACGATTCATTGATTACACAAAAGAAACCTTTGGTTCAAGAGCGTGGAGCATTATAATGCCTTTCTGAGTTTTACCTTTGTGGCTTCTAATTGATTCATTCCTTTAAGCCAAAAGCTTTACCGTTTAGTGTGTATGTAGAATTATATAATACGATTAGCTGATGCTATATTCTCATTAGTGGGTGGGTGGCGGTAGGACAGTTTTATTAGCTTTTAAATTTATCATGTATGTAATGGACGTAATTTTAAATTTTCCTTCGTGCTAACAAATTGATTGTGATAAGGAAGTGCTCCCGCGGATTTTTCTTTTTCAGACTCTCTTTTAGTCTTTACCTCTCCTCTATTGCCATTGAATTTGCTTTATCTTTTTTAATTGCTTATTTATGCTTTCTCAACACATCTTTATGACCTCCAGAAAGTGTATTTTGTGTGTCTGGAGACTTTTGGCCCATTGGTGGGTCGATATTTATTTATAAGAGTAATGTTTGCACGTGGTTGGTGCCTGAGCAATGCCCATTATCCGATGCTAACAAATGACGTCGACCCATTTCTTTATTTGAATGTGCTTTAGGAGAAGCAGCATTTGAGGAACCAACCAGAATTTGGGGAGAAAAGTGTACAAAATCAGACATTGTGATTAACCAAGGCCCCACAGCTCCACTTCCAACTGGTATTCCCACCTACACTGTGGAAGTGGTGAATGCTTGTGCTACAGGCTGTGACATCCATGGCATTCATTTCAAATGTGGCTGGTTCAGCTCGGCCCACCTCATCAATCCCAGAATCTTCAAGCGCCTTCGCTACGACGACTGCCTCGTGAACGACGGCAAGCCACTGGTCTACGGCGGAACTCTCTCCTTCCAGTATGCTAACACTTTTCCCTATCCGCTATCAGTCTCCTCAGTTGTCTGCAACTGAAATGACACGCGCCAAACCAACTAGGAGACGCTCATATGATGCTCTAGAACCAGCAGGTACTTTAGTCGATTACTGATTGACAGTGGCCCCCACCTGCCTTTTCTTTTCCTTTCTTTTCAATTTTTGGGTTCTGCTTTTGCTTTACATGTGCGTGGCCTTGTGTTTCTGTTCCTGCTCCTACAAAGTCTTTTTTTTAGAGAGGTCTGATTTTTACAGTCATCTTGAGGTTGAAGGGAGAAGGTTTGTGGTCTAATAATGGTCATGGCACCAACTTTTCGTATACATAGATGGTGAGATAGGGAAGAAATGCTAGAAACCTAGTTCATTTCAATATTTTTTTTGGGTGTGTGATGAGATAGGCGATCGAGGTAGGTAAGGCCAAAGTGTATATATATAGTTATATACAATCTGATAGCATGATGTTAGTGTCACAAATTCAGGAGATTCAAAGCCCCATTATATGCAAGAATATTTCTCTGTTTGTTTTGTTGCCTATAAATTATCTATTAATTTGTCACATCCTCTCTCACGCGGAACACATTTGTAGGCCA

mRNA sequence

ATGGACTCGAGTCCACCGAGTTTTCTTCGATCGGGTTTAAGGAGCACAAGAGTTACCCCTCGTCGCAAACTCCTTACTAGAGAAGCAGCATTTGAGGAACCAACCAGAATTTGGGGAGAAAAGTGTACAAAATCAGACATTGTGATTAACCAAGGCCCCACAGCTCCACTTCCAACTGGTATTCCCACCTACACTGTGGAAGTGGTGAATGCTTGTGCTACAGGCTGTGACATCCATGGCATTCATTTCAAATGTGGCTGGTTCAGCTCGGCCCACCTCATCAATCCCAGAATCTTCAAGCGCCTTCGCTACGACGACTGCCTCGTGAACGACGGCAAGCCACTGGTCTACGGCGGAACTCTCTCCTTCCAGTATGCTAACACTTTTCCCTATCCGCTATCAGTCTCCTCAGTTGTCTGCAACTGAAATGACACGCGCCAAACCAACTAGGAGACGCTCATATGATGCTCTAGAACCAGCAGGTACTTTAGTCGATTACTGATTGACAGTGGCCCCCACCTGCCTTTTCTTTTCCTTTCTTTTCAATTTTTGGGTTCTGCTTTTGCTTTACATGTGCGTGGCCTTGTGTTTCTGTTCCTGCTCCTACAAAGTCTTTTTTTTAGAGAGGTCTGATTTTTACAGTCATCTTGAGGTTGAAGGGAGAAGGTTTGTGGTCTAATAATGGTCATGGCACCAACTTTTCGTATACATAGATGGTGAGATAGGGAAGAAATGCTAGAAACCTAGTTCATTTCAATATTTTTTTTGGGTGTGTGATGAGATAGGCGATCGAGGTAGGTAAGGCCAAAGTGTATATATATAGTTATATACAATCTGATAGCATGATGTTAGTGTCACAAATTCAGGAGATTCAAAGCCCCATTATATGCAAGAATATTTCTCTGTTTGTTTTGTTGCCTATAAATTATCTATTAATTTGTCACATCCTCTCTCACGCGGAACACATTTGTAGGCCA

Coding sequence (CDS)

ATGGACTCGAGTCCACCGAGTTTTCTTCGATCGGGTTTAAGGAGCACAAGAGTTACCCCTCGTCGCAAACTCCTTACTAGAGAAGCAGCATTTGAGGAACCAACCAGAATTTGGGGAGAAAAGTGTACAAAATCAGACATTGTGATTAACCAAGGCCCCACAGCTCCACTTCCAACTGGTATTCCCACCTACACTGTGGAAGTGGTGAATGCTTGTGCTACAGGCTGTGACATCCATGGCATTCATTTCAAATGTGGCTGGTTCAGCTCGGCCCACCTCATCAATCCCAGAATCTTCAAGCGCCTTCGCTACGACGACTGCCTCGTGAACGACGGCAAGCCACTGGTCTACGGCGGAACTCTCTCCTTCCAGTATGCTAACACTTTTCCCTATCCGCTATCAGTCTCCTCAGTTGTCTGCAACTGA

Protein sequence

MDSSPPSFLRSGLRSTRVTPRRKLLTREAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACATGCDIHGIHFKCGWFSSAHLINPRIFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLSVSSVVCN

Homology

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BLAST of CmaCh18G003030 vs. Swiss-Prot
Match: TPD1_ARATH (Protein TAPETUM DETERMINANT 1 OS=Arabidopsis thaliana GN=TPD1 PE=1 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.6e-38
Identity = 72/108 (66.67%), Postives = 82/108 (75.93%), Query Frame = 1


Query: 33  EPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACATGCDIHGIHFKCGWFSSAH 92
           EP RI GEKC  +DIV+NQ  T P+P GIP Y VE+ N C +GC I  IH  CGWFSSA 
Sbjct: 69  EPERI-GEKCKSTDIVVNQAVTEPMPNGIPGYMVEITNQCMSGCIISRIHINCGWFSSAK 128

Query: 93  LINPRIFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLSVSSVVC 141
           LINPR+FKR+ YDDCLVN+GKPL +G TLSF YANTFPY LSV+ V C
Sbjct: 129 LINPRVFKRIHYDDCLVNNGKPLPFGSTLSFHYANTFPYHLSVAFVTC 175

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BLAST of CmaCh18G003030 vs. Swiss-Prot
Match: TDL1_ARATH (TPD1 protein homolog 1 OS=Arabidopsis thaliana GN=TDL1 PE=2 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 8.9e-37
Identity = 72/128 (56.25%), Postives = 91/128 (71.09%), Query Frame = 1


Query: 13  LRSTRVTPRRKLLTREAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNAC 72
           +   R    RKLL      +   RI G+ C+K DIV+ QG T PLP+G+P+YTVE+ N+C
Sbjct: 52  INENRTALSRKLLLSPDIGDGTNRI-GQDCSKDDIVLFQGSTNPLPSGVPSYTVEIFNSC 111

Query: 73  ATGCDIHGIHFKCGWFSSAHLINPRIFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYP 132
            + C+I  IH  CGWFSS  L+NPR+F+RL YDDCLVNDG+PL  G +LSFQYAN+F YP
Sbjct: 112 VSDCNIAEIHVSCGWFSSVRLVNPRVFRRLDYDDCLVNDGQPLGPGQSLSFQYANSFSYP 171

Query: 133 LSVSSVVC 141
           LSV+SV C
Sbjct: 172 LSVASVSC 178

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BLAST of CmaCh18G003030 vs. Swiss-Prot
Match: TDL1A_ORYSJ (TPD1 protein homolog 1A OS=Oryza sativa subsp. japonica GN=TDL1A PE=1 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 3.6e-30
Identity = 58/101 (57.43%), Postives = 74/101 (73.27%), Query Frame = 1


Query: 46  DIVINQGPTAPLPTGIPTYTVEVVNACATG------CDIHGIHFKCGWFSSAHLINPRIF 105
           DI I QG   PLP+G+P YTV+V+N CA G      C I GIH +CGWFSS  L++PR+F
Sbjct: 119 DIAIYQGRATPLPSGVPAYTVDVMNRCAGGGGGDEECAIAGIHVRCGWFSSVSLVDPRVF 178

Query: 106 KRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLSVSSVVC 141
           +RL +DDCL+NDG+PL+ G T+SF+Y N+FPY LSVS   C
Sbjct: 179 RRLGHDDCLLNDGRPLLAGETVSFEYTNSFPYKLSVSVATC 219

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BLAST of CmaCh18G003030 vs. Swiss-Prot
Match: TDL1B_ORYSJ (TPD1 protein homolog 1B OS=Oryza sativa subsp. japonica GN=TDL1B PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 7.3e-23
Identity = 45/105 (42.86%), Postives = 72/105 (68.57%), Query Frame = 1


Query: 36  RIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACATGCDIHGIHFKCGWFSSAHLIN 95
           R+  + C++ ++V+ Q     LP+GIPTY+VE++N C T C ++ +H  CG F+SA L++
Sbjct: 65  RMQPDSCSEQNVVVYQNNAEHLPSGIPTYSVEIINVC-TACTVYDVHISCGEFASAELVD 124

Query: 96  PRIFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLSVSSVVC 141
           P  F+R+ ++DCLV  G  L     +SFQY+N+F YPL+V++V C
Sbjct: 125 PSQFQRIGFNDCLVKGGGRLGPSEAVSFQYSNSFAYPLAVANVAC 168

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BLAST of CmaCh18G003030 vs. TrEMBL
Match: A0A0A0LUG9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G051700 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 8.9e-68
Identity = 123/141 (87.23%), Postives = 129/141 (91.49%), Query Frame = 1


Query: 1   MDSSPPSFLRSGLRSTRVTPRRKLL-TREAAFEEPTRIWGEKCTKSDIVINQGPTAPLPT 60
           MDS PPSFL   L +T V P RKLL TREA  EEPTRIWGEKCTKSDIVINQGPTAPLPT
Sbjct: 41  MDSGPPSFLPLDLNTTTVAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPT 100

Query: 61  GIPTYTVEVVNACATGCDIHGIHFKCGWFSSAHLINPRIFKRLRYDDCLVNDGKPLVYGG 120
           GIPTYTVEVVNAC TGC+I+GIHFKCGWFSSAHLINPR+FKRLRYDDCLVNDGKPLVYGG
Sbjct: 101 GIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGG 160

Query: 121 TLSFQYANTFPYPLSVSSVVC 141
           TLSFQYANT+PYPLSVSSV+C
Sbjct: 161 TLSFQYANTYPYPLSVSSVLC 181

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BLAST of CmaCh18G003030 vs. TrEMBL
Match: A0A067JIC3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26409 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 7.8e-56
Identity = 105/141 (74.47%), Postives = 116/141 (82.27%), Query Frame = 1


Query: 1   MDSSPPSFLRSGLRSTRVTPRRKLLTREAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTG 60
           M SS P  +  G   T   P RKLL+R  A EEP RIWGEKCTK+DIVINQGPTAPLP+G
Sbjct: 33  MGSSHP--ISKGTSYTLSAPHRKLLSRSLAMEEPNRIWGEKCTKADIVINQGPTAPLPSG 92

Query: 61  IPTYTVEVVNACATGCDIHGIHFKCGWFSSAHLINPRIFKRLRYDDCLVNDGKPLVYGGT 120
           IPTYTVE++N C TGCDI GIH  CGWFSSA LINP+IFKRLRY+DCLVNDGKPLV GGT
Sbjct: 93  IPTYTVEIMNVCVTGCDISGIHLTCGWFSSARLINPKIFKRLRYNDCLVNDGKPLVNGGT 152

Query: 121 LSFQYANTFPYPLSVSSVVCN 142
           LSF+YANTF YPLSVSSV+C+
Sbjct: 153 LSFEYANTFHYPLSVSSVICS 171

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BLAST of CmaCh18G003030 vs. TrEMBL
Match: A0A061FZR9_THECC (Tapetum determinant 1 OS=Theobroma cacao GN=TCM_014700 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 4.3e-54
Identity = 102/127 (80.31%), Postives = 110/127 (86.61%), Query Frame = 1


Query: 15  STRVTPRRKLLTREAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACAT 74
           +T  TP RKLL R  A EEP RIWGEKCTK+DIVINQGPTAPLP+GIPTYTVE+VN C T
Sbjct: 50  NTLSTPHRKLL-RGMAVEEPNRIWGEKCTKADIVINQGPTAPLPSGIPTYTVEIVNVCVT 109

Query: 75  GCDIHGIHFKCGWFSSAHLINPRIFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLS 134
           GCDI GIH  CGWFSSA LINP+IFKR+RY+DCLVNDGKPLV GGTLSFQYANTF YPLS
Sbjct: 110 GCDISGIHLNCGWFSSARLINPKIFKRIRYNDCLVNDGKPLVNGGTLSFQYANTFLYPLS 169

Query: 135 VSSVVCN 142
           VS VVC+
Sbjct: 170 VSRVVCS 175

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BLAST of CmaCh18G003030 vs. TrEMBL
Match: V7AW39_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G162500g PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 2.0e-51
Identity = 93/119 (78.15%), Postives = 105/119 (88.24%), Query Frame = 1


Query: 22  RKLLTREAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACATGCDIHGI 81
           RKLLT E    EP RIWGEKC+KSDIVINQGPTAPLP+GIPTYTVE++N C +GCDI GI
Sbjct: 60  RKLLTSENGKMEPNRIWGEKCSKSDIVINQGPTAPLPSGIPTYTVEIMNMCVSGCDISGI 119

Query: 82  HFKCGWFSSAHLINPRIFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLSVSSVVC 141
           H +CGWFSSA LINP++FKRLRY+DCLVNDG+PL+ G T+SFQYANTF YPLSVSSVVC
Sbjct: 120 HLRCGWFSSARLINPKVFKRLRYNDCLVNDGRPLINGATISFQYANTFLYPLSVSSVVC 178

[Close]

BLAST of CmaCh18G003030 vs. TrEMBL
Match: A0A0D2T9S2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G208800 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 2.6e-51
Identity = 96/126 (76.19%), Postives = 107/126 (84.92%), Query Frame = 1


Query: 16  TRVTPRRKLLTREAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACATG 75
           T +TP RKLL    A  E  RIWGEKC+K+DIVINQGPTAPLP+GIPTYTVE++N C +G
Sbjct: 51  TLLTPHRKLL--RTALAETNRIWGEKCSKADIVINQGPTAPLPSGIPTYTVEILNVCVSG 110

Query: 76  CDIHGIHFKCGWFSSAHLINPRIFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLSV 135
           CDI GIH  CGWFSSA LINP+IFKRLRY+DCLVNDGKPL+ GGTLSFQYANTF YPLSV
Sbjct: 111 CDISGIHLTCGWFSSARLINPKIFKRLRYNDCLVNDGKPLINGGTLSFQYANTFLYPLSV 170

Query: 136 SSVVCN 142
           S VVC+
Sbjct: 171 SRVVCS 174

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BLAST of CmaCh18G003030 vs. TAIR10
Match: AT4G24972.1 (AT4G24972.1 tapetum determinant 1)

HSP 1 Score: 160.2 bits (404), Expect = 9.1e-40
Identity = 72/108 (66.67%), Postives = 82/108 (75.93%), Query Frame = 1


Query: 33  EPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACATGCDIHGIHFKCGWFSSAH 92
           EP RI GEKC  +DIV+NQ  T P+P GIP Y VE+ N C +GC I  IH  CGWFSSA 
Sbjct: 69  EPERI-GEKCKSTDIVVNQAVTEPMPNGIPGYMVEITNQCMSGCIISRIHINCGWFSSAK 128

Query: 93  LINPRIFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLSVSSVVC 141
           LINPR+FKR+ YDDCLVN+GKPL +G TLSF YANTFPY LSV+ V C
Sbjct: 129 LINPRVFKRIHYDDCLVNNGKPLPFGSTLSFHYANTFPYHLSVAFVTC 175

[Close]

BLAST of CmaCh18G003030 vs. TAIR10
Match: AT1G32583.1 (AT1G32583.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 154.5 bits (389), Expect = 5.0e-38
Identity = 72/128 (56.25%), Postives = 91/128 (71.09%), Query Frame = 1


Query: 13  LRSTRVTPRRKLLTREAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNAC 72
           +   R    RKLL      +   RI G+ C+K DIV+ QG T PLP+G+P+YTVE+ N+C
Sbjct: 52  INENRTALSRKLLLSPDIGDGTNRI-GQDCSKDDIVLFQGSTNPLPSGVPSYTVEIFNSC 111

Query: 73  ATGCDIHGIHFKCGWFSSAHLINPRIFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYP 132
            + C+I  IH  CGWFSS  L+NPR+F+RL YDDCLVNDG+PL  G +LSFQYAN+F YP
Sbjct: 112 VSDCNIAEIHVSCGWFSSVRLVNPRVFRRLDYDDCLVNDGQPLGPGQSLSFQYANSFSYP 171

Query: 133 LSVSSVVC 141
           LSV+SV C
Sbjct: 172 LSVASVSC 178

[Close]

BLAST of CmaCh18G003030 vs. TAIR10
Match: AT1G05835.1 (AT1G05835.1 PHD finger protein)

HSP 1 Score: 48.9 bits (115), Expect = 3.0e-06
Identity = 28/72 (38.89%), Postives = 39/72 (54.17%), Query Frame = 1


Query: 64  YTVEVVNACATGCDIHGIHFKCGWFSSAHLINPRIFKRLRYD--DCLVNDGKPLVYGGTL 123
           + VEV+N C   C I  +  KC  F  + L++P   + L     +C+VNDG PL    TL
Sbjct: 48  FRVEVMNKCPM-CPIINLRLKCQGFPQS-LVDPTFLRVLSSSAGNCVVNDGLPLSPMQTL 107

Query: 124 SFQYANTFPYPL 134
           SF Y+NT  + L
Sbjct: 108 SFNYSNTHQFAL 117

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BLAST of CmaCh18G003030 vs. NCBI nr
Match: gi|659067542|ref|XP_008439976.1| (PREDICTED: uncharacterized protein LOC103484600 [Cucumis melo])

HSP 1 Score: 266.2 bits (679), Expect = 3.4e-68
Identity = 124/141 (87.94%), Postives = 130/141 (92.20%), Query Frame = 1


Query: 1   MDSSPPSFLRSGLRSTRVTPRRKLL-TREAAFEEPTRIWGEKCTKSDIVINQGPTAPLPT 60
           MDSSPPSFL   L +T V P RKLL TREA  EEPTRIWGEKCTKSDIVINQGPTAPLPT
Sbjct: 41  MDSSPPSFLPLNLNTTTVAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPT 100

Query: 61  GIPTYTVEVVNACATGCDIHGIHFKCGWFSSAHLINPRIFKRLRYDDCLVNDGKPLVYGG 120
           GIPTYTVEVVNAC TGC+I+GIHFKCGWFSSAHLINPR+FKRLRYDDCLVNDGKPLVYGG
Sbjct: 101 GIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGG 160

Query: 121 TLSFQYANTFPYPLSVSSVVC 141
           TLSFQYANT+PYPLSVSSV+C
Sbjct: 161 TLSFQYANTYPYPLSVSSVLC 181

[Close]

BLAST of CmaCh18G003030 vs. NCBI nr
Match: gi|449472127|ref|XP_004153503.1| (PREDICTED: protein TAPETUM DETERMINANT 1 [Cucumis sativus])

HSP 1 Score: 264.2 bits (674), Expect = 1.3e-67
Identity = 123/141 (87.23%), Postives = 129/141 (91.49%), Query Frame = 1


Query: 1   MDSSPPSFLRSGLRSTRVTPRRKLL-TREAAFEEPTRIWGEKCTKSDIVINQGPTAPLPT 60
           MDS PPSFL   L +T V P RKLL TREA  EEPTRIWGEKCTKSDIVINQGPTAPLPT
Sbjct: 41  MDSGPPSFLPLDLNTTTVAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPT 100

Query: 61  GIPTYTVEVVNACATGCDIHGIHFKCGWFSSAHLINPRIFKRLRYDDCLVNDGKPLVYGG 120
           GIPTYTVEVVNAC TGC+I+GIHFKCGWFSSAHLINPR+FKRLRYDDCLVNDGKPLVYGG
Sbjct: 101 GIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGG 160

Query: 121 TLSFQYANTFPYPLSVSSVVC 141
           TLSFQYANT+PYPLSVSSV+C
Sbjct: 161 TLSFQYANTYPYPLSVSSVLC 181

[Close]

BLAST of CmaCh18G003030 vs. NCBI nr
Match: gi|802770527|ref|XP_012090642.1| (PREDICTED: protein TAPETUM DETERMINANT 1-like [Jatropha curcas])

HSP 1 Score: 224.6 bits (571), Expect = 1.1e-55
Identity = 105/141 (74.47%), Postives = 116/141 (82.27%), Query Frame = 1


Query: 1   MDSSPPSFLRSGLRSTRVTPRRKLLTREAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTG 60
           M SS P  +  G   T   P RKLL+R  A EEP RIWGEKCTK+DIVINQGPTAPLP+G
Sbjct: 33  MGSSHP--ISKGTSYTLSAPHRKLLSRSLAMEEPNRIWGEKCTKADIVINQGPTAPLPSG 92

Query: 61  IPTYTVEVVNACATGCDIHGIHFKCGWFSSAHLINPRIFKRLRYDDCLVNDGKPLVYGGT 120
           IPTYTVE++N C TGCDI GIH  CGWFSSA LINP+IFKRLRY+DCLVNDGKPLV GGT
Sbjct: 93  IPTYTVEIMNVCVTGCDISGIHLTCGWFSSARLINPKIFKRLRYNDCLVNDGKPLVNGGT 152

Query: 121 LSFQYANTFPYPLSVSSVVCN 142
           LSF+YANTF YPLSVSSV+C+
Sbjct: 153 LSFEYANTFHYPLSVSSVICS 171

[Close]

BLAST of CmaCh18G003030 vs. NCBI nr
Match: gi|590670477|ref|XP_007038067.1| (Tapetum determinant 1 [Theobroma cacao])

HSP 1 Score: 218.8 bits (556), Expect = 6.1e-54
Identity = 102/127 (80.31%), Postives = 110/127 (86.61%), Query Frame = 1


Query: 15  STRVTPRRKLLTREAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACAT 74
           +T  TP RKLL R  A EEP RIWGEKCTK+DIVINQGPTAPLP+GIPTYTVE+VN C T
Sbjct: 50  NTLSTPHRKLL-RGMAVEEPNRIWGEKCTKADIVINQGPTAPLPSGIPTYTVEIVNVCVT 109

Query: 75  GCDIHGIHFKCGWFSSAHLINPRIFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLS 134
           GCDI GIH  CGWFSSA LINP+IFKR+RY+DCLVNDGKPLV GGTLSFQYANTF YPLS
Sbjct: 110 GCDISGIHLNCGWFSSARLINPKIFKRIRYNDCLVNDGKPLVNGGTLSFQYANTFLYPLS 169

Query: 135 VSSVVCN 142
           VS VVC+
Sbjct: 170 VSRVVCS 175

[Close]

BLAST of CmaCh18G003030 vs. NCBI nr
Match: gi|225456402|ref|XP_002280540.1| (PREDICTED: uncharacterized protein LOC100261037 [Vitis vinifera])

HSP 1 Score: 215.7 bits (548), Expect = 5.2e-53
Identity = 100/125 (80.00%), Postives = 107/125 (85.60%), Query Frame = 1


Query: 16  TRVTPRRKLLTREAAFEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACATG 75
           T   P RKLL R  A  EP RIWGEKC+K+DIVINQGPT+PLP+GIPTYTVE++N C TG
Sbjct: 46  TLSVPHRKLLHR--ALVEPNRIWGEKCSKADIVINQGPTSPLPSGIPTYTVEIMNVCFTG 105

Query: 76  CDIHGIHFKCGWFSSAHLINPRIFKRLRYDDCLVNDGKPLVYGGTLSFQYANTFPYPLSV 135
           CDI GIH  CGWFSSA LINPRIFKRLRYDDCLVNDG+PL  GGTLSFQYANTFPYPLSV
Sbjct: 106 CDISGIHLSCGWFSSARLINPRIFKRLRYDDCLVNDGRPLTNGGTLSFQYANTFPYPLSV 165

Query: 136 SSVVC 141
           SSVVC
Sbjct: 166 SSVVC 168

The following BLAST results are available for this feature:

BLAST of CmaCh18G003030 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TPD1_ARATH	1.6e-38	66.67	Protein TAPETUM DETERMINANT 1 OS=Arabidopsis thaliana GN=TPD1 PE=1 SV=1	[more]
TDL1_ARATH	8.9e-37	56.25	TPD1 protein homolog 1 OS=Arabidopsis thaliana GN=TDL1 PE=2 SV=1	[more]
TDL1A_ORYSJ	3.6e-30	57.43	TPD1 protein homolog 1A OS=Oryza sativa subsp. japonica GN=TDL1A PE=1 SV=1	[more]
TDL1B_ORYSJ	7.3e-23	42.86	TPD1 protein homolog 1B OS=Oryza sativa subsp. japonica GN=TDL1B PE=2 SV=1	[more]

BLAST of CmaCh18G003030 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUG9_CUCSA	8.9e-68	87.23	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G051700 PE=4 SV=1	[more]
A0A067JIC3_JATCU	7.8e-56	74.47	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26409 PE=4 SV=1	[more]
A0A061FZR9_THECC	4.3e-54	80.31	Tapetum determinant 1 OS=Theobroma cacao GN=TCM_014700 PE=4 SV=1	[more]
V7AW39_PHAVU	2.0e-51	78.15	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G162500g PE=4 SV=1	[more]
A0A0D2T9S2_GOSRA	2.6e-51	76.19	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G208800 PE=4 SV=1	[more]

BLAST of CmaCh18G003030 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G24972.1	9.1e-40	66.67	tapetum determinant 1	[more]
AT1G32583.1	5.0e-38	56.25	FUNCTIONS IN: molecular_function unknown	[more]
AT1G05835.1	3.0e-06	38.89	PHD finger protein	[more]

BLAST of CmaCh18G003030 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659067542\|ref\|XP_008439976.1\|	3.4e-68	87.94	PREDICTED: uncharacterized protein LOC103484600 [Cucumis melo]	[more]
gi\|449472127\|ref\|XP_004153503.1\|	1.3e-67	87.23	PREDICTED: protein TAPETUM DETERMINANT 1 [Cucumis sativus]	[more]
gi\|802770527\|ref\|XP_012090642.1\|	1.1e-55	74.47	PREDICTED: protein TAPETUM DETERMINANT 1-like [Jatropha curcas]	[more]
gi\|590670477\|ref\|XP_007038067.1\|	6.1e-54	80.31	Tapetum determinant 1 [Theobroma cacao]	[more]
gi\|225456402\|ref\|XP_002280540.1\|	5.2e-53	80.00	PREDICTED: uncharacterized protein LOC100261037 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048653	anther development
biological_process	GO:0001709	cell fate determination
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh18G003030.1	CmaCh18G003030.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33184	FAMILY NOT NAMED	coord: 16..141 score: 1.8
None	No IPR available	PANTHER	PTHR33184:SF2	TPD1	coord: 16..141 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh18G003030	Cucsa.134810	Cucumber (Gy14) v1	cgycmaB0367
CmaCh18G003030	Cla002639	Watermelon (97103) v1	cmawmB371
CmaCh18G003030	Csa1G051700	Cucumber (Chinese Long) v2	cmacuB397
CmaCh18G003030	MELO3C002379	Melon (DHL92) v3.5.1	cmameB356
CmaCh18G003030	ClCG03G003950	Watermelon (Charleston Gray)	cmawcgB358
CmaCh18G003030	CSPI01G09780	Wild cucumber (PI 183967)	cmacpiB401
CmaCh18G003030	CmoCh18G002330	Cucurbita moschata (Rifu)	cmacmoB409
CmaCh18G003030	CmoCh13G008540	Cucurbita moschata (Rifu)	cmacmoB400
CmaCh18G003030	Lsi02G005220	Bottle gourd (USVL1VR-Ls)	cmalsiB373
CmaCh18G003030	Cp4.1LG09g09510	Cucurbita pepo (Zucchini)	cmacpeB414
CmaCh18G003030	Cp4.1LG20g02950	Cucurbita pepo (Zucchini)	cmacpeB440
CmaCh18G003030	MELO3C002379.2	Melon (DHL92) v3.6.1	cmamedB413
CmaCh18G003030	CsaV3_1G009840	Cucumber (Chinese Long) v3	cmacucB0474
CmaCh18G003030	Cla97C03G055110	Watermelon (97103) v2	cmawmbB417
CmaCh18G003030	Bhi08G001251	Wax gourd	cmawgoB0533
CmaCh18G003030	CsGy1G009800	Cucumber (Gy14) v2	cgybcmaB093
CmaCh18G003030	Carg07616	Silver-seed gourd	carcmaB1397
CmaCh18G003030	Carg06810	Silver-seed gourd	carcmaB0693

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh18G003030	CmaCh13G008230	Cucurbita maxima (Rimu)	cmacmaB218

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh18G003030	Cucurbita pepo (Zucchini)	cmacpeB428
CmaCh18G003030	Bottle gourd (USVL1VR-Ls)	cmalsiB392
CmaCh18G003030	Silver-seed gourd	carcmaB0516
CmaCh18G003030	Cucumber (Chinese Long) v3	cmacucB0472
CmaCh18G003030	Watermelon (97103) v2	cmawmbB433
CmaCh18G003030	Cucurbita maxima (Rimu)	cmacmaB101
CmaCh18G003030	Cucumber (Gy14) v1	cgycmaB0436
CmaCh18G003030	Cucurbita moschata (Rifu)	cmacmoB387