CmoCh13G008540 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh13G008540
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Tapetum determinant 1
Location	Cmo_Chr13 : 7836028 .. 7837361 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACTCGAGTCCACCTAGTTTTCTTCGGCTGGGTTTGAACAGCACAATAGGTGCCCCTCATCGCAAGCTTCTCCTGACTAGTAAGTTTATGAATTCTGATTTGTCTTGTTTCGTAAATGCCAATATAAAATCGTTAAGAGGAAGGTTTGTTTCTGAGTTTGCTGTGGAAATTTATATTTTAATAACCGTTTGATTCTTGTTCTGTATTGGAATTATGATCTCGGGGATGGTGGAAGGGAGAGATTGGTTACTCAATTGCATAAATGGTTGATTTGGTGTCAGAAATGCACGCACGTCCATTCTTAGTAATGAAGCTAAGACACACCTTTTGCTGGATAGCTTTCCAGCTTCGGCTCTTTAACCTATATGGCCTTTCTGTAGCTGTTTTTGGAGATGTCTTCTTAAATAGATCCCAAATACCCACCAGCCTTTGTTCCTCTTCTGTCGACGATTCATTGATTACATAAAAGCAACCTTTGGCCCGAAAGCGCGGAGCATTATAATGCCTTTCTGAGTTTTAGCTTTGTAGATTCTAATTGATTCATTGCTTTGACGAGAAAGCTCTACAGTTGATGCGTGGACTCTCTTTAGTGGGATGGTTGGGGGTATAGTTTTATTAGTTCTTGAATTTTTCATATGGGCGTAGTATTAAATTTTATGATTTGTTGGGTCAAACAAATGAACAGAAACTTAAAAAATGTTCCCGTGGATTTGTCTTTTTCAGGCTCTCTTTACTCATTACCTCTCATCTATTGCCTTTGAATTTGCTTTATCTTATATAATTGATTGTTTATGCTTTCTCTACACATCTTTATGACTTCCCGAAAGTGTGTTTTGTGTGTCCAAAGACTTTTTCCCATTGGGAGGTCGATATTTATTTATAAGAGTAATGTTTGCACGTGGGTGGTGCGCGAACATTGATCAATATACAATGACAACAGATGACATGGACCTGTTTCTTTATTTGAATGTGCTTTAGGAGAAGCAACAATTGAGGAACCAACCAGAATTTGGGGTGAAAAGTGCACAAAATCAGACATAGTGATTAACCAAGGCCCCACAGCTCCACTTCCAACTGGTATCCCCACCTACACTGTTGAAGTGGTGAACGCTTGTGTCACTGGTTGTGATATCTATGGAATTCACTTCAAATGCGGCTGGTTCAGCTCAGCGCACCTCATCAATCCCAGAGTCTTCAAGCGCCTTCATTACGACGACTGCCTCGTGAATGACGGCAAGCCTCTTGTCTACGGCGGTACACTCTCTTTCCAGTATGCAAACACTTACCCTTACCCGCTTTCAGTCTCCTCAGTTGTCTGCAAACTGAAATGA

mRNA sequence

ATGGACTCGAGTCCACCTAGTTTTCTTCGGCTGGGTTTGAACAGCACAATAGGTGCCCCTCATCGCAAGCTTCTCCTGACTAGAGAAGCAACAATTGAGGAACCAACCAGAATTTGGGGTGAAAAGTGCACAAAATCAGACATAGTGATTAACCAAGGCCCCACAGCTCCACTTCCAACTGGTATCCCCACCTACACTGTTGAAGTGGTGAACGCTTGTGTCACTGGTTGTGATATCTATGGAATTCACTTCAAATGCGGCTGGTTCAGCTCAGCGCACCTCATCAATCCCAGAGTCTTCAAGCGCCTTCATTACGACGACTGCCTCGTGAATGACGGCAAGCCTCTTGTCTACGGCGGTACACTCTCTTTCCAGTATGCAAACACTTACCCTTACCCGCTTTCAGTCTCCTCAGTTGTCTGCAAACTGAAATGA

Coding sequence (CDS)

ATGGACTCGAGTCCACCTAGTTTTCTTCGGCTGGGTTTGAACAGCACAATAGGTGCCCCTCATCGCAAGCTTCTCCTGACTAGAGAAGCAACAATTGAGGAACCAACCAGAATTTGGGGTGAAAAGTGCACAAAATCAGACATAGTGATTAACCAAGGCCCCACAGCTCCACTTCCAACTGGTATCCCCACCTACACTGTTGAAGTGGTGAACGCTTGTGTCACTGGTTGTGATATCTATGGAATTCACTTCAAATGCGGCTGGTTCAGCTCAGCGCACCTCATCAATCCCAGAGTCTTCAAGCGCCTTCATTACGACGACTGCCTCGTGAATGACGGCAAGCCTCTTGTCTACGGCGGTACACTCTCTTTCCAGTATGCAAACACTTACCCTTACCCGCTTTCAGTCTCCTCAGTTGTCTGCAAACTGAAATGA

Homology

[Close]

BLAST of CmoCh13G008540 vs. Swiss-Prot
Match: TPD1_ARATH (Protein TAPETUM DETERMINANT 1 OS=Arabidopsis thaliana GN=TPD1 PE=1 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.8e-40
Identity = 79/126 (62.70%), Postives = 92/126 (73.02%), Query Frame = 1


Query: 21  HRKLLLTREATIE-----EPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVT 80
           HRK+LL    T +     EP RI GEKC  +DIV+NQ  T P+P GIP Y VE+ N C++
Sbjct: 51  HRKMLLLSPGTGKTERSVEPERI-GEKCKSTDIVVNQAVTEPMPNGIPGYMVEITNQCMS 110

Query: 81  GCDIYGIHFKCGWFSSAHLINPRVFKRLHYDDCLVNDGKPLVYGGTLSFQYANTYPYPLS 140
           GC I  IH  CGWFSSA LINPRVFKR+HYDDCLVN+GKPL +G TLSF YANT+PY LS
Sbjct: 111 GCIISRIHINCGWFSSAKLINPRVFKRIHYDDCLVNNGKPLPFGSTLSFHYANTFPYHLS 170

Query: 141 VSSVVC 142
           V+ V C
Sbjct: 171 VAFVTC 175

[Close]

BLAST of CmoCh13G008540 vs. Swiss-Prot
Match: TDL1_ARATH (TPD1 protein homolog 1 OS=Arabidopsis thaliana GN=TDL1 PE=2 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.7e-38
Identity = 78/135 (57.78%), Postives = 100/135 (74.07%), Query Frame = 1


Query: 7   SFLRLGLNSTIGAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYT 66
           SF+ +  N T  A  RKLLL+ +  I + T   G+ C+K DIV+ QG T PLP+G+P+YT
Sbjct: 48  SFVSINENRT--ALSRKLLLSPD--IGDGTNRIGQDCSKDDIVLFQGSTNPLPSGVPSYT 107

Query: 67  VEVVNACVTGCDIYGIHFKCGWFSSAHLINPRVFKRLHYDDCLVNDGKPLVYGGTLSFQY 126
           VE+ N+CV+ C+I  IH  CGWFSS  L+NPRVF+RL YDDCLVNDG+PL  G +LSFQY
Sbjct: 108 VEIFNSCVSDCNIAEIHVSCGWFSSVRLVNPRVFRRLDYDDCLVNDGQPLGPGQSLSFQY 167

Query: 127 ANTYPYPLSVSSVVC 142
           AN++ YPLSV+SV C
Sbjct: 168 ANSFSYPLSVASVSC 178

[Close]

BLAST of CmoCh13G008540 vs. Swiss-Prot
Match: TDL1A_ORYSJ (TPD1 protein homolog 1A OS=Oryza sativa subsp. japonica GN=TDL1A PE=1 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.4e-29
Identity = 57/101 (56.44%), Postives = 73/101 (72.28%), Query Frame = 1


Query: 47  DIVINQGPTAPLPTGIPTYTVEVVNACVTG------CDIYGIHFKCGWFSSAHLINPRVF 106
           DI I QG   PLP+G+P YTV+V+N C  G      C I GIH +CGWFSS  L++PRVF
Sbjct: 119 DIAIYQGRATPLPSGVPAYTVDVMNRCAGGGGGDEECAIAGIHVRCGWFSSVSLVDPRVF 178

Query: 107 KRLHYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVVC 142
           +RL +DDCL+NDG+PL+ G T+SF+Y N++PY LSVS   C
Sbjct: 179 RRLGHDDCLLNDGRPLLAGETVSFEYTNSFPYKLSVSVATC 219

[Close]

BLAST of CmoCh13G008540 vs. Swiss-Prot
Match: TDL1B_ORYSJ (TPD1 protein homolog 1B OS=Oryza sativa subsp. japonica GN=TDL1B PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.4e-23
Identity = 45/106 (42.45%), Postives = 73/106 (68.87%), Query Frame = 1


Query: 37  RIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVTGCDIYGIHFKCGWFSSAHLIN 96
           R+  + C++ ++V+ Q     LP+GIPTY+VE++N C T C +Y +H  CG F+SA L++
Sbjct: 65  RMQPDSCSEQNVVVYQNNAEHLPSGIPTYSVEIINVC-TACTVYDVHISCGEFASAELVD 124

Query: 97  PRVFKRLHYDDCLVNDGKPLVYGGTLSFQYANTYPYPLSVSSVVCK 143
           P  F+R+ ++DCLV  G  L     +SFQY+N++ YPL+V++V C+
Sbjct: 125 PSQFQRIGFNDCLVKGGGRLGPSEAVSFQYSNSFAYPLAVANVACE 169

[Close]

BLAST of CmoCh13G008540 vs. TrEMBL
Match: A0A0A0LUG9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G051700 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 5.0e-74
Identity = 132/141 (93.62%), Postives = 135/141 (95.74%), Query Frame = 1


Query: 1   MDSSPPSFLRLGLNSTIGAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPT 60
           MDS PPSFL L LN+T  APHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPT
Sbjct: 41  MDSGPPSFLPLDLNTTTVAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPT 100

Query: 61  GIPTYTVEVVNACVTGCDIYGIHFKCGWFSSAHLINPRVFKRLHYDDCLVNDGKPLVYGG 120
           GIPTYTVEVVNACVTGC+IYGIHFKCGWFSSAHLINPRVFKRL YDDCLVNDGKPLVYGG
Sbjct: 101 GIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGG 160

Query: 121 TLSFQYANTYPYPLSVSSVVC 142
           TLSFQYANTYPYPLSVSSV+C
Sbjct: 161 TLSFQYANTYPYPLSVSSVLC 181

[Close]

BLAST of CmoCh13G008540 vs. TrEMBL
Match: A0A067JIC3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26409 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.0e-55
Identity = 104/141 (73.76%), Postives = 119/141 (84.40%), Query Frame = 1


Query: 1   MDSSPPSFLRLGLNSTIGAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPT 60
           M SS P  +  G + T+ APHRKLL +R   +EEP RIWGEKCTK+DIVINQGPTAPLP+
Sbjct: 33  MGSSHP--ISKGTSYTLSAPHRKLL-SRSLAMEEPNRIWGEKCTKADIVINQGPTAPLPS 92

Query: 61  GIPTYTVEVVNACVTGCDIYGIHFKCGWFSSAHLINPRVFKRLHYDDCLVNDGKPLVYGG 120
           GIPTYTVE++N CVTGCDI GIH  CGWFSSA LINP++FKRL Y+DCLVNDGKPLV GG
Sbjct: 93  GIPTYTVEIMNVCVTGCDISGIHLTCGWFSSARLINPKIFKRLRYNDCLVNDGKPLVNGG 152

Query: 121 TLSFQYANTYPYPLSVSSVVC 142
           TLSF+YANT+ YPLSVSSV+C
Sbjct: 153 TLSFEYANTFHYPLSVSSVIC 170

[Close]

BLAST of CmoCh13G008540 vs. TrEMBL
Match: A0A061FZR9_THECC (Tapetum determinant 1 OS=Theobroma cacao GN=TCM_014700 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.5e-54
Identity = 99/128 (77.34%), Postives = 111/128 (86.72%), Query Frame = 1


Query: 14  NSTIGAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNAC 73
           ++T+  PHRKLL  R   +EEP RIWGEKCTK+DIVINQGPTAPLP+GIPTYTVE+VN C
Sbjct: 49  DNTLSTPHRKLL--RGMAVEEPNRIWGEKCTKADIVINQGPTAPLPSGIPTYTVEIVNVC 108

Query: 74  VTGCDIYGIHFKCGWFSSAHLINPRVFKRLHYDDCLVNDGKPLVYGGTLSFQYANTYPYP 133
           VTGCDI GIH  CGWFSSA LINP++FKR+ Y+DCLVNDGKPLV GGTLSFQYANT+ YP
Sbjct: 109 VTGCDISGIHLNCGWFSSARLINPKIFKRIRYNDCLVNDGKPLVNGGTLSFQYANTFLYP 168

Query: 134 LSVSSVVC 142
           LSVS VVC
Sbjct: 169 LSVSRVVC 174

[Close]

BLAST of CmoCh13G008540 vs. TrEMBL
Match: K4BJH0_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 9.1e-52
Identity = 96/128 (75.00%), Postives = 110/128 (85.94%), Query Frame = 1


Query: 14  NSTIGAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNAC 73
           N+ +G PHRKLL   +    E TRIWG+KC+KSDIVINQGPTAPLP+GIPTYTVE++N C
Sbjct: 52  NTNVG-PHRKLL--NQGNEVETTRIWGDKCSKSDIVINQGPTAPLPSGIPTYTVEIMNVC 111

Query: 74  VTGCDIYGIHFKCGWFSSAHLINPRVFKRLHYDDCLVNDGKPLVYGGTLSFQYANTYPYP 133
           V+GCDI GIH  CGWFSSA LINPR+FKRLH+DDCLVNDGKPL+ G T+SFQYANT+ YP
Sbjct: 112 VSGCDISGIHLSCGWFSSARLINPRIFKRLHFDDCLVNDGKPLINGHTISFQYANTFRYP 171

Query: 134 LSVSSVVC 142
           LSVSSVVC
Sbjct: 172 LSVSSVVC 176

[Close]

BLAST of CmoCh13G008540 vs. TrEMBL
Match: A0A0D2T9S2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G208800 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 2.7e-51
Identity = 95/128 (74.22%), Postives = 108/128 (84.38%), Query Frame = 1


Query: 14  NSTIGAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNAC 73
           N T+  PHRKLL T    + E  RIWGEKC+K+DIVINQGPTAPLP+GIPTYTVE++N C
Sbjct: 49  NHTLLTPHRKLLRT---ALAETNRIWGEKCSKADIVINQGPTAPLPSGIPTYTVEILNVC 108

Query: 74  VTGCDIYGIHFKCGWFSSAHLINPRVFKRLHYDDCLVNDGKPLVYGGTLSFQYANTYPYP 133
           V+GCDI GIH  CGWFSSA LINP++FKRL Y+DCLVNDGKPL+ GGTLSFQYANT+ YP
Sbjct: 109 VSGCDISGIHLTCGWFSSARLINPKIFKRLRYNDCLVNDGKPLINGGTLSFQYANTFLYP 168

Query: 134 LSVSSVVC 142
           LSVS VVC
Sbjct: 169 LSVSRVVC 173

[Close]

BLAST of CmoCh13G008540 vs. TAIR10
Match: AT4G24972.1 (AT4G24972.1 tapetum determinant 1)

HSP 1 Score: 166.8 bits (421), Expect = 1.0e-41
Identity = 79/126 (62.70%), Postives = 92/126 (73.02%), Query Frame = 1


Query: 21  HRKLLLTREATIE-----EPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVT 80
           HRK+LL    T +     EP RI GEKC  +DIV+NQ  T P+P GIP Y VE+ N C++
Sbjct: 51  HRKMLLLSPGTGKTERSVEPERI-GEKCKSTDIVVNQAVTEPMPNGIPGYMVEITNQCMS 110

Query: 81  GCDIYGIHFKCGWFSSAHLINPRVFKRLHYDDCLVNDGKPLVYGGTLSFQYANTYPYPLS 140
           GC I  IH  CGWFSSA LINPRVFKR+HYDDCLVN+GKPL +G TLSF YANT+PY LS
Sbjct: 111 GCIISRIHINCGWFSSAKLINPRVFKRIHYDDCLVNNGKPLPFGSTLSFHYANTFPYHLS 170

Query: 141 VSSVVC 142
           V+ V C
Sbjct: 171 VAFVTC 175

[Close]

BLAST of CmoCh13G008540 vs. TAIR10
Match: AT1G32583.1 (AT1G32583.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 160.2 bits (404), Expect = 9.3e-40
Identity = 78/135 (57.78%), Postives = 100/135 (74.07%), Query Frame = 1


Query: 7   SFLRLGLNSTIGAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYT 66
           SF+ +  N T  A  RKLLL+ +  I + T   G+ C+K DIV+ QG T PLP+G+P+YT
Sbjct: 48  SFVSINENRT--ALSRKLLLSPD--IGDGTNRIGQDCSKDDIVLFQGSTNPLPSGVPSYT 107

Query: 67  VEVVNACVTGCDIYGIHFKCGWFSSAHLINPRVFKRLHYDDCLVNDGKPLVYGGTLSFQY 126
           VE+ N+CV+ C+I  IH  CGWFSS  L+NPRVF+RL YDDCLVNDG+PL  G +LSFQY
Sbjct: 108 VEIFNSCVSDCNIAEIHVSCGWFSSVRLVNPRVFRRLDYDDCLVNDGQPLGPGQSLSFQY 167

Query: 127 ANTYPYPLSVSSVVC 142
           AN++ YPLSV+SV C
Sbjct: 168 ANSFSYPLSVASVSC 178

[Close]

BLAST of CmoCh13G008540 vs. TAIR10
Match: AT1G05835.1 (AT1G05835.1 PHD finger protein)

HSP 1 Score: 49.3 bits (116), Expect = 2.3e-06
Identity = 28/72 (38.89%), Postives = 40/72 (55.56%), Query Frame = 1


Query: 65  YTVEVVNACVTGCDIYGIHFKCGWFSSAHLINPRVFKRLHYD--DCLVNDGKPLVYGGTL 124
           + VEV+N C   C I  +  KC  F  + L++P   + L     +C+VNDG PL    TL
Sbjct: 48  FRVEVMNKCPM-CPIINLRLKCQGFPQS-LVDPTFLRVLSSSAGNCVVNDGLPLSPMQTL 107

Query: 125 SFQYANTYPYPL 135
           SF Y+NT+ + L
Sbjct: 108 SFNYSNTHQFAL 117

[Close]

BLAST of CmoCh13G008540 vs. NCBI nr
Match: gi|659067542|ref|XP_008439976.1| (PREDICTED: uncharacterized protein LOC103484600 [Cucumis melo])

HSP 1 Score: 287.0 bits (733), Expect = 1.9e-74
Identity = 133/141 (94.33%), Postives = 136/141 (96.45%), Query Frame = 1


Query: 1   MDSSPPSFLRLGLNSTIGAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPT 60
           MDSSPPSFL L LN+T  APHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPT
Sbjct: 41  MDSSPPSFLPLNLNTTTVAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPT 100

Query: 61  GIPTYTVEVVNACVTGCDIYGIHFKCGWFSSAHLINPRVFKRLHYDDCLVNDGKPLVYGG 120
           GIPTYTVEVVNACVTGC+IYGIHFKCGWFSSAHLINPRVFKRL YDDCLVNDGKPLVYGG
Sbjct: 101 GIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGG 160

Query: 121 TLSFQYANTYPYPLSVSSVVC 142
           TLSFQYANTYPYPLSVSSV+C
Sbjct: 161 TLSFQYANTYPYPLSVSSVLC 181

[Close]

BLAST of CmoCh13G008540 vs. NCBI nr
Match: gi|449472127|ref|XP_004153503.1| (PREDICTED: protein TAPETUM DETERMINANT 1 [Cucumis sativus])

HSP 1 Score: 285.0 bits (728), Expect = 7.1e-74
Identity = 132/141 (93.62%), Postives = 135/141 (95.74%), Query Frame = 1


Query: 1   MDSSPPSFLRLGLNSTIGAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPT 60
           MDS PPSFL L LN+T  APHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPT
Sbjct: 41  MDSGPPSFLPLDLNTTTVAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPT 100

Query: 61  GIPTYTVEVVNACVTGCDIYGIHFKCGWFSSAHLINPRVFKRLHYDDCLVNDGKPLVYGG 120
           GIPTYTVEVVNACVTGC+IYGIHFKCGWFSSAHLINPRVFKRL YDDCLVNDGKPLVYGG
Sbjct: 101 GIPTYTVEVVNACVTGCEIYGIHFKCGWFSSAHLINPRVFKRLRYDDCLVNDGKPLVYGG 160

Query: 121 TLSFQYANTYPYPLSVSSVVC 142
           TLSFQYANTYPYPLSVSSV+C
Sbjct: 161 TLSFQYANTYPYPLSVSSVLC 181

[Close]

BLAST of CmoCh13G008540 vs. NCBI nr
Match: gi|802770527|ref|XP_012090642.1| (PREDICTED: protein TAPETUM DETERMINANT 1-like [Jatropha curcas])

HSP 1 Score: 224.2 bits (570), Expect = 1.5e-55
Identity = 104/141 (73.76%), Postives = 119/141 (84.40%), Query Frame = 1


Query: 1   MDSSPPSFLRLGLNSTIGAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPT 60
           M SS P  +  G + T+ APHRKLL +R   +EEP RIWGEKCTK+DIVINQGPTAPLP+
Sbjct: 33  MGSSHP--ISKGTSYTLSAPHRKLL-SRSLAMEEPNRIWGEKCTKADIVINQGPTAPLPS 92

Query: 61  GIPTYTVEVVNACVTGCDIYGIHFKCGWFSSAHLINPRVFKRLHYDDCLVNDGKPLVYGG 120
           GIPTYTVE++N CVTGCDI GIH  CGWFSSA LINP++FKRL Y+DCLVNDGKPLV GG
Sbjct: 93  GIPTYTVEIMNVCVTGCDISGIHLTCGWFSSARLINPKIFKRLRYNDCLVNDGKPLVNGG 152

Query: 121 TLSFQYANTYPYPLSVSSVVC 142
           TLSF+YANT+ YPLSVSSV+C
Sbjct: 153 TLSFEYANTFHYPLSVSSVIC 170

[Close]

BLAST of CmoCh13G008540 vs. NCBI nr
Match: gi|590670477|ref|XP_007038067.1| (Tapetum determinant 1 [Theobroma cacao])

HSP 1 Score: 220.3 bits (560), Expect = 2.2e-54
Identity = 99/128 (77.34%), Postives = 111/128 (86.72%), Query Frame = 1


Query: 14  NSTIGAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNAC 73
           ++T+  PHRKLL  R   +EEP RIWGEKCTK+DIVINQGPTAPLP+GIPTYTVE+VN C
Sbjct: 49  DNTLSTPHRKLL--RGMAVEEPNRIWGEKCTKADIVINQGPTAPLPSGIPTYTVEIVNVC 108

Query: 74  VTGCDIYGIHFKCGWFSSAHLINPRVFKRLHYDDCLVNDGKPLVYGGTLSFQYANTYPYP 133
           VTGCDI GIH  CGWFSSA LINP++FKR+ Y+DCLVNDGKPLV GGTLSFQYANT+ YP
Sbjct: 109 VTGCDISGIHLNCGWFSSARLINPKIFKRIRYNDCLVNDGKPLVNGGTLSFQYANTFLYP 168

Query: 134 LSVSSVVC 142
           LSVS VVC
Sbjct: 169 LSVSRVVC 174

[Close]

BLAST of CmoCh13G008540 vs. NCBI nr
Match: gi|225456402|ref|XP_002280540.1| (PREDICTED: uncharacterized protein LOC100261037 [Vitis vinifera])

HSP 1 Score: 216.1 bits (549), Expect = 4.1e-53
Identity = 96/126 (76.19%), Postives = 107/126 (84.92%), Query Frame = 1


Query: 16  TIGAPHRKLLLTREATIEEPTRIWGEKCTKSDIVINQGPTAPLPTGIPTYTVEVVNACVT 75
           T+  PHRKLL      + EP RIWGEKC+K+DIVINQGPT+PLP+GIPTYTVE++N C T
Sbjct: 46  TLSVPHRKLL---HRALVEPNRIWGEKCSKADIVINQGPTSPLPSGIPTYTVEIMNVCFT 105

Query: 76  GCDIYGIHFKCGWFSSAHLINPRVFKRLHYDDCLVNDGKPLVYGGTLSFQYANTYPYPLS 135
           GCDI GIH  CGWFSSA LINPR+FKRL YDDCLVNDG+PL  GGTLSFQYANT+PYPLS
Sbjct: 106 GCDISGIHLSCGWFSSARLINPRIFKRLRYDDCLVNDGRPLTNGGTLSFQYANTFPYPLS 165

Query: 136 VSSVVC 142
           VSSVVC
Sbjct: 166 VSSVVC 168

The following BLAST results are available for this feature:

BLAST of CmoCh13G008540 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TPD1_ARATH	1.8e-40	62.70	Protein TAPETUM DETERMINANT 1 OS=Arabidopsis thaliana GN=TPD1 PE=1 SV=1	[more]
TDL1_ARATH	1.7e-38	57.78	TPD1 protein homolog 1 OS=Arabidopsis thaliana GN=TDL1 PE=2 SV=1	[more]
TDL1A_ORYSJ	2.4e-29	56.44	TPD1 protein homolog 1A OS=Oryza sativa subsp. japonica GN=TDL1A PE=1 SV=1	[more]
TDL1B_ORYSJ	3.4e-23	42.45	TPD1 protein homolog 1B OS=Oryza sativa subsp. japonica GN=TDL1B PE=2 SV=1	[more]

BLAST of CmoCh13G008540 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUG9_CUCSA	5.0e-74	93.62	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G051700 PE=4 SV=1	[more]
A0A067JIC3_JATCU	1.0e-55	73.76	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26409 PE=4 SV=1	[more]
A0A061FZR9_THECC	1.5e-54	77.34	Tapetum determinant 1 OS=Theobroma cacao GN=TCM_014700 PE=4 SV=1	[more]
K4BJH0_SOLLC	9.1e-52	75.00	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
A0A0D2T9S2_GOSRA	2.7e-51	74.22	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G208800 PE=4 SV=1	[more]

BLAST of CmoCh13G008540 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G24972.1	1.0e-41	62.70	tapetum determinant 1	[more]
AT1G32583.1	9.3e-40	57.78	FUNCTIONS IN: molecular_function unknown	[more]
AT1G05835.1	2.3e-06	38.89	PHD finger protein	[more]

BLAST of CmoCh13G008540 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659067542\|ref\|XP_008439976.1\|	1.9e-74	94.33	PREDICTED: uncharacterized protein LOC103484600 [Cucumis melo]	[more]
gi\|449472127\|ref\|XP_004153503.1\|	7.1e-74	93.62	PREDICTED: protein TAPETUM DETERMINANT 1 [Cucumis sativus]	[more]
gi\|802770527\|ref\|XP_012090642.1\|	1.5e-55	73.76	PREDICTED: protein TAPETUM DETERMINANT 1-like [Jatropha curcas]	[more]
gi\|590670477\|ref\|XP_007038067.1\|	2.2e-54	77.34	Tapetum determinant 1 [Theobroma cacao]	[more]
gi\|225456402\|ref\|XP_002280540.1\|	4.1e-53	76.19	PREDICTED: uncharacterized protein LOC100261037 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048653	anther development
biological_process	GO:0001709	cell fate determination
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G008540.1	CmoCh13G008540.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33184	FAMILY NOT NAMED	coord: 20..141 score: 9.3
None	No IPR available	PANTHER	PTHR33184:SF2	TPD1	coord: 20..141 score: 9.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh13G008540	Cucsa.134810	Cucumber (Gy14) v1	cgycmoB0363
CmoCh13G008540	CmaCh13G008230	Cucurbita maxima (Rimu)	cmacmoB218
CmoCh13G008540	CmaCh18G003030	Cucurbita maxima (Rimu)	cmacmoB400
CmoCh13G008540	Cla002639	Watermelon (97103) v1	cmowmB175
CmoCh13G008540	Csa1G051700	Cucumber (Chinese Long) v2	cmocuB189
CmoCh13G008540	MELO3C002379	Melon (DHL92) v3.5.1	cmomeB183
CmoCh13G008540	ClCG03G003950	Watermelon (Charleston Gray)	cmowcgB186
CmoCh13G008540	CSPI01G09780	Wild cucumber (PI 183967)	cmocpiB193
CmoCh13G008540	Lsi02G005220	Bottle gourd (USVL1VR-Ls)	cmolsiB192
CmoCh13G008540	Cp4.1LG09g09510	Cucurbita pepo (Zucchini)	cmocpeB184
CmoCh13G008540	Cp4.1LG20g02950	Cucurbita pepo (Zucchini)	cmocpeB201
CmoCh13G008540	MELO3C002379.2	Melon (DHL92) v3.6.1	cmomedB206
CmoCh13G008540	CsaV3_1G009840	Cucumber (Chinese Long) v3	cmocucB0222
CmoCh13G008540	Cla97C03G055110	Watermelon (97103) v2	cmowmbB211
CmoCh13G008540	Bhi08G001251	Wax gourd	cmowgoB0249
CmoCh13G008540	CsGy1G009800	Cucumber (Gy14) v2	cgybcmoB058
CmoCh13G008540	Carg07616	Silver-seed gourd	carcmoB1349
CmoCh13G008540	Carg06810	Silver-seed gourd	carcmoB0670

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh13G008540	CmoCh18G002330	Cucurbita moschata (Rifu)	cmocmoB166

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh13G008540	Wax gourd	cmowgoB0230
CmoCh13G008540	Cucurbita moschata (Rifu)	cmocmoB054
CmoCh13G008540	Cucurbita moschata (Rifu)	cmocmoB090
CmoCh13G008540	Cucumber (Gy14) v1	cgycmoB0434
CmoCh13G008540	Cucurbita maxima (Rimu)	cmacmoB126
CmoCh13G008540	Cucurbita maxima (Rimu)	cmacmoB084
CmoCh13G008540	Wild cucumber (PI 183967)	cmocpiB213
CmoCh13G008540	Cucumber (Chinese Long) v2	cmocuB211
CmoCh13G008540	Melon (DHL92) v3.5.1	cmomeB192
CmoCh13G008540	Watermelon (Charleston Gray)	cmowcgB196
CmoCh13G008540	Watermelon (97103) v1	cmowmB203
CmoCh13G008540	Cucurbita pepo (Zucchini)	cmocpeB194
CmoCh13G008540	Cucurbita pepo (Zucchini)	cmocpeB213
CmoCh13G008540	Bottle gourd (USVL1VR-Ls)	cmolsiB207
CmoCh13G008540	Cucumber (Gy14) v2	cgybcmoB076
CmoCh13G008540	Melon (DHL92) v3.6.1	cmomedB214
CmoCh13G008540	Silver-seed gourd	carcmoB0497
CmoCh13G008540	Cucumber (Chinese Long) v3	cmocucB0243
CmoCh13G008540	Cucumber (Chinese Long) v3	cmocucB0256
CmoCh13G008540	Watermelon (97103) v2	cmowmbB223