Cp4.1LG20g07950 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG20g07950
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionRING-H2 finger protein-like protein
LocationCp4.1LG20 : 7887575 .. 7888366 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTTCAATTCCACTTCGCTGATCGGTTTCGCTCAGAGCGTATTCTCCTACAACAGCAACATCATGCTCGCTGCTCTCATTTCTCTTCTCCTCGTCGTCCTCTTCGTCCTTCTCCTCCACGCCTACGCCAATTGCTTCTTCCCTCAGCCTCGCCACCGCCGGACTTCTGTCACTGTCTCCTACGTCCTCGGTCCGCCTCGCCTCTCGCGTTTCGATTCGGTTCCATTCGATTCAGGCGCCGCTCCGTCGAAAGGCCTCGATCCGTCTGTAATCTCTGCGATTCCTCTGTTCGTTTACGAATCCGAGGAGAAGAAGTGCGCGGCGGTGATGGAGTGCGTGATTTGCCTCAGCGAATTTGAGGAACGAGAGCTTGGACGACGCTTGCCGAAATGTAGCCATGGATTTCACCTCGAGTGTATCGATATGTGGCTGAATTCTCACGCGAGTTGTCCTGTTTGTAGAGCGCCGGTGCTTGGCGACGCCACGGATTGTTCCGATGCGGTAGAATCCGGCCGGTTGAGTGGCGAGAGGGAAATCGGAGGAGAGATTGTAACGGAGGAGCGGCGCAATTGTGAGATTCAGAGAAACGAGGGGCAAAACGGTCAGTTTCATTCTGATTCTTCCTCTTCTTCCTCTTCTTCTTCTTCTTCGTCTTCTTTATCTTCGTCGAGTTCTTCGACTGATCAGCCATTGATGTCGCTTGGAGCGTCTTTAAAACGAATGTTGAGCAGAAACAGATCGGACGGGAGGATTTTCCCCTCCTCCGATGGCGACGAATTGGATGTTTGA

mRNA sequence

ATGGCGTTCAATTCCACTTCGCTGATCGGTTTCGCTCAGAGCGTATTCTCCTACAACAGCAACATCATGCTCGCTGCTCTCATTTCTCTTCTCCTCGTCGTCCTCTTCGTCCTTCTCCTCCACGCCTACGCCAATTGCTTCTTCCCTCAGCCTCGCCACCGCCGGACTTCTGTCACTGTCTCCTACGTCCTCGGTCCGCCTCGCCTCTCGCGTTTCGATTCGGTTCCATTCGATTCAGGCGCCGCTCCGTCGAAAGGCCTCGATCCGTCTGTAATCTCTGCGATTCCTCTGTTCGTTTACGAATCCGAGGAGAAGAAGTGCGCGGCGGTGATGGAGTGCGTGATTTGCCTCAGCGAATTTGAGGAACGAGAGCTTGGACGACGCTTGCCGAAATGTAGCCATGGATTTCACCTCGAGTGTATCGATATGTGGCTGAATTCTCACGCGAGTTGTCCTGTTTGTAGAGCGCCGGTGCTTGGCGACGCCACGGATTGTTCCGATGCGGTAGAATCCGGCCGGTTGAGTGGCGAGAGGGAAATCGGAGGAGAGATTGTAACGGAGGAGCGGCGCAATTGTGAGATTCAGAGAAACGAGGGGCAAAACGGTCAGTTTCATTCTGATTCTTCCTCTTCTTCCTCTTCTTCTTCTTCTTCGTCTTCTTTATCTTCGTCGAGTTCTTCGACTGATCAGCCATTGATGTCGCTTGGAGCGTCTTTAAAACGAATGTTGAGCAGAAACAGATCGGACGGGAGGATTTTCCCCTCCTCCGATGGCGACGAATTGGATGTTTGA

Coding sequence (CDS)

ATGGCGTTCAATTCCACTTCGCTGATCGGTTTCGCTCAGAGCGTATTCTCCTACAACAGCAACATCATGCTCGCTGCTCTCATTTCTCTTCTCCTCGTCGTCCTCTTCGTCCTTCTCCTCCACGCCTACGCCAATTGCTTCTTCCCTCAGCCTCGCCACCGCCGGACTTCTGTCACTGTCTCCTACGTCCTCGGTCCGCCTCGCCTCTCGCGTTTCGATTCGGTTCCATTCGATTCAGGCGCCGCTCCGTCGAAAGGCCTCGATCCGTCTGTAATCTCTGCGATTCCTCTGTTCGTTTACGAATCCGAGGAGAAGAAGTGCGCGGCGGTGATGGAGTGCGTGATTTGCCTCAGCGAATTTGAGGAACGAGAGCTTGGACGACGCTTGCCGAAATGTAGCCATGGATTTCACCTCGAGTGTATCGATATGTGGCTGAATTCTCACGCGAGTTGTCCTGTTTGTAGAGCGCCGGTGCTTGGCGACGCCACGGATTGTTCCGATGCGGTAGAATCCGGCCGGTTGAGTGGCGAGAGGGAAATCGGAGGAGAGATTGTAACGGAGGAGCGGCGCAATTGTGAGATTCAGAGAAACGAGGGGCAAAACGGTCAGTTTCATTCTGATTCTTCCTCTTCTTCCTCTTCTTCTTCTTCTTCGTCTTCTTTATCTTCGTCGAGTTCTTCGACTGATCAGCCATTGATGTCGCTTGGAGCGTCTTTAAAACGAATGTTGAGCAGAAACAGATCGGACGGGAGGATTTTCCCCTCCTCCGATGGCGACGAATTGGATGTTTGA

Protein sequence

MAFNSTSLIGFAQSVFSYNSNIMLAALISLLLVVLFVLLLHAYANCFFPQPRHRRTSVTVSYVLGPPRLSRFDSVPFDSGAAPSKGLDPSVISAIPLFVYESEEKKCAAVMECVICLSEFEERELGRRLPKCSHGFHLECIDMWLNSHASCPVCRAPVLGDATDCSDAVESGRLSGEREIGGEIVTEERRNCEIQRNEGQNGQFHSDSSSSSSSSSSSSSLSSSSSSTDQPLMSLGASLKRMLSRNRSDGRIFPSSDGDELDV
Homology
[Close]
BLAST of Cp4.1LG20g07950 vs. Swiss-Prot
Match: ATL63_ARATH (RING-H2 finger protein ATL63 OS=Arabidopsis thaliana GN=ATL63 PE=2 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.1e-35
Identity = 85/177 (48.02%), Postives = 112/177 (63.28%), Query Frame = 1 

Query: 6   TSLIGFAQSVFSYNSNIMLAALISLLLVVLFVLLLHAYANCFFP---------------Q 65
           +SL  F + + SYNSN++LAAL+ LLLVVLFVLLLH YA  F+                +
Sbjct: 13  SSLSSFLKILSSYNSNVLLAALVFLLLVVLFVLLLHFYARFFWSPSHQDFSAAARHRRRR 72

Query: 66  PRHRRTSVTVSYVLGPPRLSRFD---SVPFDSGAAPSKGLDPSVISAIPLFVYESEEKKC 125
            R+RR +VT + ++    L  FD   S P  +     KGLD SVIS+IPLFVYE  E++ 
Sbjct: 73  RRNRRRTVTTTRIIPSLPLGGFDDGVSSPAATATRDDKGLDSSVISSIPLFVYEENEEEE 132

Query: 126 AAVMECVICLSEFEERELGRRLPKCSHGFHLECIDMWLNSHASCPVCRAPVLGDATD 165
               ECVICL  +E  + GR+L  C HGFH+ECIDMWL+SH++CP+CR+PVL   +D
Sbjct: 133 DEEEECVICLGLWEAGDFGRKLRNCGHGFHVECIDMWLSSHSTCPLCRSPVLAAVSD 189

[Close]
BLAST of Cp4.1LG20g07950 vs. Swiss-Prot
Match: ATL64_ARATH (RING-H2 finger protein ATL64 OS=Arabidopsis thaliana GN=ATL64 PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.6e-21
Identity = 60/156 (38.46%), Postives = 85/156 (54.49%), Query Frame = 1 

Query: 9   IGFAQSVFSYNSNIMLAALISLLLVVLFVLLLHAYANCFFPQPRHRRTSVTVSYVLGPPR 68
           +    S ++ N  IML+++I L + V+ +L  H+YA   F +   R      S+      
Sbjct: 15  VSHTSSGYALNGKIMLSSVIVLFVAVIMILCFHSYARWLFRRHNRRIRRRIRSH------ 74

Query: 69  LSRFDSVPFDSGAAPSKGLDPSVISAIPLFVYES------EEKKCAAVMECVICLSEFEE 128
           L    + P D      + LD +V+  IP+FVY S      EEK+     EC +CLSEFEE
Sbjct: 75  LRTLSASPRD------QALDQAVLDKIPIFVYSSKNPPPPEEKE-----ECSVCLSEFEE 134

Query: 129 RELGRRLPKCSHGFHLECIDMWLNSHASCPVCRAPV 159
            + GR LPKC H FH++CID W  S ++CP+CRAPV
Sbjct: 135 EDEGRLLPKCGHSFHVDCIDTWFRSRSTCPLCRAPV 153

[Close]
BLAST of Cp4.1LG20g07950 vs. Swiss-Prot
Match: ATL3_ARATH (RING-H2 finger protein ATL3 OS=Arabidopsis thaliana GN=ATL3 PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.7e-20
Identity = 61/166 (36.75%), Postives = 87/166 (52.41%), Query Frame = 1 

Query: 20  SNIMLAALISLLLVVLFVLLLHAYANCFF----------PQPRHRRTSVTVSYVLGPPRL 79
           S I+L A+I L + VLFVL+LH YA  ++           Q +  +        + PP +
Sbjct: 22  SKIILTAIIVLFMAVLFVLILHLYAKLYWWRIDQLQQQQQQQQQEQEQEEDQSSIAPPVV 81

Query: 80  SR-----FDSVPFDSGAAPSKGLDPSVISAIPLFVYESEEKKCAAVMECVICLSEFEERE 139
           +R     F  VP    A  + GL    +S++P+  +  +   C   +EC ICLSE  + +
Sbjct: 82  TRRQRRRFIFVP-GQDALSNTGLTSFELSSLPIVFFRQDS--CKDGLECSICLSELVKGD 141

Query: 140 LGRRLPKCSHGFHLECIDMWLNSHASCPVCRAPVLGDATDCSDAVE 171
             R LPKC+H FH+ECIDMW  SH++CP+CR  VLG     S  VE
Sbjct: 142 KARLLPKCNHSFHVECIDMWFQSHSTCPICRNTVLGPEQASSKRVE 184

[Close]
BLAST of Cp4.1LG20g07950 vs. Swiss-Prot
Match: ATL2_ARATH (RING-H2 finger protein ATL2 OS=Arabidopsis thaliana GN=ATL2 PE=2 SV=2)

HSP 1 Score: 95.5 bits (236), Expect = 9.2e-19
Identity = 80/260 (30.77%), Postives = 121/260 (46.54%), Query Frame = 1 

Query: 16  FSYNSNIMLAALISLLLVVLFVLLLHAYANCFFPQPRHR--------RTSVTVSYVLGPP 75
           ++ +  IML+A++ L  VV+ ++ LH YA  +  + R R        R +  V +   P 
Sbjct: 24  YAMSGKIMLSAIVILFFVVILMVFLHLYARWYLLRARRRHLRRRSRNRRATMVFFTADPS 83

Query: 76  RLSRFDSVPFDSGAAPSKGLDPSVISAIPLFVYESEEKKCAAVMECVICLSEFEERELGR 135
             +        +    S+GLDP+VI ++P+F +  E  K    +EC +CLSEFEE E GR
Sbjct: 84  TAA--------TSVVASRGLDPNVIKSLPVFTFSDETHKDP--IECAVCLSEFEESETGR 143

Query: 136 RLPKCSHGFHLECIDMWLNSHASCPVCRAPVLGDATDCSDAVESGRLSGEREIGGEIVTE 195
            LP C H FH++CIDMW +SH++CP+CR+ V     +    +ES   + ERE+   + ++
Sbjct: 144 VLPNCQHTFHVDCIDMWFHSHSTCPLCRSLV-----ESLAGIESTAAAREREVVIAVDSD 203

Query: 196 ERRNCEIQRNEGQNGQFHSDSSSSSSSSSSS-------------SSLSSSSSSTDQPL-- 248
                E   + G   + H   SS      S              S      +  D P   
Sbjct: 204 PVLVIEPSSSSGLTDEPHGSGSSQMLREDSGRKPAAIEVPRRTFSEFEDELTRRDSPASQ 263

[Close]
BLAST of Cp4.1LG20g07950 vs. Swiss-Prot
Match: ATL5_ARATH (RING-H2 finger protein ATL5 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 5.9e-18
Identity = 79/219 (36.07%), Postives = 111/219 (50.68%), Query Frame = 1 

Query: 14  SVFSYNSNIMLAALISLLLVVLFVLLLHAYANCFFPQPRHRRTSVTVSYVLGPPRLSRFD 73
           S +S N  IMLA++I L + V+ +L  H+YA   F + ++RR    +S  L     +R D
Sbjct: 20  SRYSLNGKIMLASVIILFVAVILILCFHSYARWLFRR-QNRRIRRRISAHLRSLAAAR-D 79

Query: 74  SVPFDSGAAPSKGLDPSVISAIPLFVYESEEKKCAAVMECVICLSEFEERELGRRLPKCS 133
                S  +P   LDP+V+  IP+FVY  +  + + + EC +CLSEFEE + GR LPKC 
Sbjct: 80  PTQSSSSLSP---LDPTVLEKIPIFVYSVKTHE-SPLEECSVCLSEFEEDDEGRVLPKCG 139

Query: 134 HGFHLECIDMWLNSHASCPVCRAPVLGDATDCSDAVESGRLSGEREIGGEIVTEERRNCE 193
           H FH++CID W  S +SCP+CRAPV                        + VTE      
Sbjct: 140 HVFHVDCIDTWFRSRSSCPLCRAPVQ---------------------PAQPVTEPEPVAA 199

Query: 194 IQRNEGQNGQFHSDSSSSSSSSSSSSSLSSSSSSTDQPL 233
           +  +        + SSSSS  S SS+  SSS S    P+
Sbjct: 200 VFPSVKPIEDTEAGSSSSSDESESSTPSSSSGSPVRFPM 211

[Close]
BLAST of Cp4.1LG20g07950 vs. TrEMBL
Match: A0A0A0LXP0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G532370 PE=4 SV=1)

HSP 1 Score: 343.6 bits (880), Expect = 2.1e-91
Identity = 201/266 (75.56%), Postives = 214/266 (80.45%), Query Frame = 1 

Query: 4   NSTSLIGFAQSVFSYNSNIMLAALISLLLVVLFVLLLHAYANCFFPQPRH-RRTSVTVSY 63
           NSTSL  FAQ++FSYNSNIMLAALISLLLVVLFVLLLHAYANCFFP PRH RRTSVTVSY
Sbjct: 63  NSTSLTQFAQTIFSYNSNIMLAALISLLLVVLFVLLLHAYANCFFPHPRHHRRTSVTVSY 122

Query: 64  VLGPPRLSRFDSVPFDSGAAPS--KGLDPSVISAIPLFVYESEEKKCAAV---MECVICL 123
           VL PPRLSRFDSVPFD G+APS  KGLDPSVISAIPLFVYESEEKKCAA    MECVICL
Sbjct: 123 VLAPPRLSRFDSVPFDLGSAPSNSKGLDPSVISAIPLFVYESEEKKCAAAAAAMECVICL 182

Query: 124 SEFEERELGRRLPKCSHGFHLECIDMWLNSHASCPVCRAPVLGDATDCSDAVESGRLSGE 183
           SEFEERELGRRLPKC HGFHLECIDMWLNSHA+CPVCR PV+G+A DCSDAVE    SGE
Sbjct: 183 SEFEERELGRRLPKCRHGFHLECIDMWLNSHANCPVCREPVIGEAVDCSDAVE----SGE 242

Query: 184 REIGGEIVTEERRNCEIQRNEGQNGQFHSDSSSSSSSSSSSSSLSSSSSSTDQPLMSLGA 243
            EIG E V           NEGQ+ QF+SDSSSSS+SS     L S          S+GA
Sbjct: 243 GEIGRETV-----------NEGQSVQFNSDSSSSSTSSVDPPPLMS----------SIGA 302

Query: 244 SLKRMLSRNRSDGRIFPSSDGDELDV 264
           SL R+LSRNRSDGRIFPSS+G+EL V
Sbjct: 303 SLIRILSRNRSDGRIFPSSNGEELGV 303

[Close]
BLAST of Cp4.1LG20g07950 vs. TrEMBL
Match: D7SJU6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g06930 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.9e-47
Identity = 125/262 (47.71%), Postives = 167/262 (63.74%), Query Frame = 1 

Query: 5   STSLIGFAQSVFSYNSNIMLAALISLLLVVLFVLLLHAYANCFFPQPRHRR-TSVTVSYV 64
           S+    F +SVFSYN N+MLAA++SLLLV+LFVL+LH YA  F    RHRR +SV+VS+V
Sbjct: 11  SSPFTDFMKSVFSYNGNVMLAAIVSLLLVILFVLVLHIYAKWFLAHARHRRRSSVSVSHV 70

Query: 65  LGPPRLSRFDSVPFDS--GAAPSKGLDPSVISAIPLFVYESEEKKCAAVMECVICLSEFE 124
           L P R   F +  F++    +P+KGLD S IS+IPLFVY++EE K    +ECVICLS FE
Sbjct: 71  LRPTRFHHFHTFTFETTLSGSPTKGLDSSAISSIPLFVYKAEEHKHG--LECVICLSVFE 130

Query: 125 ERELGRRLPKCSHGFHLECIDMWLNSHASCPVCRAPVLGDATDCSDAVESGRLSGEREIG 184
           + ++GR LPKC H FH++CIDMWL+SH++CP+CRAP   +    S   E+    G  E+ 
Sbjct: 131 DDDVGRNLPKCGHAFHVQCIDMWLHSHSNCPICRAPAACEKKAVSQPDEAILQEGSIELS 190

Query: 185 -------GEIVTEERRNCEIQRNEGQNGQFHSDSSSSSSSSSSSSSLSSSSSSTDQPLMS 244
                  G I  +      ++  + +NG   +D   S S+SSS SS SS          S
Sbjct: 191 EAFIGDLGLIDEDSPMELVVEIPDSENGNAVTDIHDSLSASSSLSSQSS----------S 250

Query: 245 LGASLKRMLSRNRSDGRIFPSS 257
           LG+SLKRMLSRNRS+ ++ PSS
Sbjct: 251 LGSSLKRMLSRNRSEHKVHPSS 260

[Close]
BLAST of Cp4.1LG20g07950 vs. TrEMBL
Match: A0A061GXF4_THECC (Toxicos en levadura 2, putative OS=Theobroma cacao GN=TCM_042177 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 5.2e-45
Identity = 123/254 (48.43%), Postives = 164/254 (64.57%), Query Frame = 1 

Query: 14  SVFSYNSNIMLAALISLLLVVLFVLLLHAYANCFFPQPRHRR--TSVTVSYVLGPPRLSR 73
           S+ SY+ N+MLAA+ISLLLV+LFVLLLH YA  F  Q R R   +S++VS+V  P R  R
Sbjct: 22  SISSYDGNVMLAAVISLLLVILFVLLLHVYAKWFLAQARQRSRSSSMSVSHVFRPDRFHR 81

Query: 74  FDSVPFDSG--AAPSKGLDPSVISAIPLFVYESEEKKCAAVMECVICLSEFEERELGRRL 133
           F +  FD+   ++P KGLD SVIS+IPLFVY  EE K    +ECVICLS FE+ ++GR L
Sbjct: 82  FHAFTFDTTFRSSPLKGLDSSVISSIPLFVYTMEEYKHN--LECVICLSPFEDDDVGRNL 141

Query: 134 PKCSHGFHLECIDMWLNSHASCPVCRAPVLGDATDCSDAVESGRLSGEREIGGEIVTEER 193
           PKC H FH+ECIDMWL SH++CP+CRAPVL      +D V    +S    +G   V   R
Sbjct: 142 PKCGHCFHVECIDMWLQSHSNCPICRAPVLS-----NDKVADSEVSSLESVG---VLLNR 201

Query: 194 RNCEIQRNEGQNGQFHSDSSSSSSSSSSSSSLSSSSSSTDQPLMSLGASLKRMLSRNRSD 253
               I  N   +       S++  ++++   + S+SSS+     SLG SLKRMLSRNRS+
Sbjct: 202 EVGVIDGNLRLDNLTELSDSNNRPTAAADDDILSASSSSLTLSSSLGCSLKRMLSRNRSE 261

Query: 254 GRIFPSSDGDELDV 264
            ++FPSS+  E++V
Sbjct: 262 RKVFPSSNASEMEV 265

[Close]
BLAST of Cp4.1LG20g07950 vs. TrEMBL
Match: B9HND1_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0009s07800g PE=4 SV=2)

HSP 1 Score: 188.3 bits (477), Expect = 1.2e-44
Identity = 121/245 (49.39%), Postives = 153/245 (62.45%), Query Frame = 1 

Query: 14  SVFSYNSNIMLAALISLLLVVLFVLLLHAYANCFFPQPRHRR--TSVTVSYVLGPPRLSR 73
           S+ SY+SNIMLAA+ISLL+V+LFVLLLH YA  F  Q R+RR  +SVT S+VL P R   
Sbjct: 19  SISSYDSNIMLAAVISLLVVILFVLLLHIYAKWFLAQARNRRRSSSVTASHVLLPSRFHH 78

Query: 74  FDSVPFDS--GAAPSKGLDPSVISAIPLFVYESEEKKCAAVMECVICLSEFEERELGRRL 133
             +   D+    + SKGLD SVIS+IPLFVY++EE  C   +ECVICLS FEE E GR L
Sbjct: 79  LHNFTIDTTFSTSTSKGLDTSVISSIPLFVYKAEE--CKQGLECVICLSPFEENEAGRSL 138

Query: 134 PKCSHGFHLECIDMWLNSHASCPVCRAPVLGDATDCSD---AVESGRLSGEREIGGEIVT 193
            +C HGFH+ECIDMWLNSH++CPVCRAP + D  D +    ++E+       + G   V 
Sbjct: 139 TRCGHGFHVECIDMWLNSHSNCPVCRAPAVSDDNDIASDGKSMEASTRESTDDRGLSDVG 198

Query: 194 EERRNCEIQRNEGQNGQFHSDSSSSSSSSSSSSSLSSSSSSTDQPLMSLGASLKRMLSRN 252
           + R    I  +E  N   + D  S S S+SS                SLG+SLKRMLSRN
Sbjct: 199 DSRLEIVISNSENGNLAVNCDCLSESPSTSS----------------SLGSSLKRMLSRN 245

[Close]
BLAST of Cp4.1LG20g07950 vs. TrEMBL
Match: B9GGQ3_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0001s28610g PE=4 SV=2)

HSP 1 Score: 187.6 bits (475), Expect = 2.0e-44
Identity = 132/259 (50.97%), Postives = 163/259 (62.93%), Query Frame = 1 

Query: 14  SVFSYNSNIMLAALISLLLVVLFVLLLHAYANCFFPQPRHRR--TSVTVSYVLGPPRLSR 73
           S+ SY+SNIMLAA+ISLLLV+LFVLLLH YA  F  Q RHRR  +SV+VS+VL   R   
Sbjct: 19  SISSYDSNIMLAAVISLLLVILFVLLLHIYAKWFLAQARHRRRSSSVSVSHVLRASRFHH 78

Query: 74  FDSVPFDS--GAAPSKGLDPSVISAIPLFVYESEEKKCAAVMECVICLSEFEERELGRRL 133
           F +   D+    +PSKGLD SVIS+IPLFVY++EE  C   +ECVICLS FEE E+G+ L
Sbjct: 79  FHNFTVDTTFSTSPSKGLDRSVISSIPLFVYKAEE--CKQGLECVICLSPFEENEVGKSL 138

Query: 134 PKCSHGFHLECIDMWLNSHASCPVCRAPVLGDATDCS-DAVESGRLSGER------EIGG 193
            KC HGFH+ECIDMWLNSH++CPVCRAP +GD  D + D ++S  +S E         GG
Sbjct: 139 TKCGHGFHVECIDMWLNSHSNCPVCRAPAVGDDNDIAIDDLKSTEVSRESTDERGLSDGG 198

Query: 194 ----EIVTEERRNCEIQRNEGQNGQFHSDSSSSSSSSSSSSSLSSSSSSTDQPLMSLGAS 253
               EIVT      E   +E +NG    +    S S S+S SLSS              S
Sbjct: 199 ASRLEIVT------EFSNSENENGNVAVNRDCLSESPSTSLSLSS--------------S 254

Query: 254 LKRMLSRNRSDGR--IFPS 256
           LKRM  RNRS+ +  +FPS
Sbjct: 259 LKRM-CRNRSESKWVLFPS 254

[Close]
BLAST of Cp4.1LG20g07950 vs. TAIR10
Match: AT5G58580.1 (AT5G58580.1 TOXICOS EN LEVADURA 63)

HSP 1 Score: 151.8 bits (382), Expect = 6.1e-37
Identity = 85/177 (48.02%), Postives = 112/177 (63.28%), Query Frame = 1 

Query: 6   TSLIGFAQSVFSYNSNIMLAALISLLLVVLFVLLLHAYANCFFP---------------Q 65
           +SL  F + + SYNSN++LAAL+ LLLVVLFVLLLH YA  F+                +
Sbjct: 13  SSLSSFLKILSSYNSNVLLAALVFLLLVVLFVLLLHFYARFFWSPSHQDFSAAARHRRRR 72

Query: 66  PRHRRTSVTVSYVLGPPRLSRFD---SVPFDSGAAPSKGLDPSVISAIPLFVYESEEKKC 125
            R+RR +VT + ++    L  FD   S P  +     KGLD SVIS+IPLFVYE  E++ 
Sbjct: 73  RRNRRRTVTTTRIIPSLPLGGFDDGVSSPAATATRDDKGLDSSVISSIPLFVYEENEEEE 132

Query: 126 AAVMECVICLSEFEERELGRRLPKCSHGFHLECIDMWLNSHASCPVCRAPVLGDATD 165
               ECVICL  +E  + GR+L  C HGFH+ECIDMWL+SH++CP+CR+PVL   +D
Sbjct: 133 DEEEECVICLGLWEAGDFGRKLRNCGHGFHVECIDMWLSSHSTCPLCRSPVLAAVSD 189

[Close]
BLAST of Cp4.1LG20g07950 vs. TAIR10
Match: AT2G47560.1 (AT2G47560.1 RING/U-box superfamily protein)

HSP 1 Score: 104.0 bits (258), Expect = 1.5e-22
Identity = 60/156 (38.46%), Postives = 85/156 (54.49%), Query Frame = 1 

Query: 9   IGFAQSVFSYNSNIMLAALISLLLVVLFVLLLHAYANCFFPQPRHRRTSVTVSYVLGPPR 68
           +    S ++ N  IML+++I L + V+ +L  H+YA   F +   R      S+      
Sbjct: 15  VSHTSSGYALNGKIMLSSVIVLFVAVIMILCFHSYARWLFRRHNRRIRRRIRSH------ 74

Query: 69  LSRFDSVPFDSGAAPSKGLDPSVISAIPLFVYES------EEKKCAAVMECVICLSEFEE 128
           L    + P D      + LD +V+  IP+FVY S      EEK+     EC +CLSEFEE
Sbjct: 75  LRTLSASPRD------QALDQAVLDKIPIFVYSSKNPPPPEEKE-----ECSVCLSEFEE 134

Query: 129 RELGRRLPKCSHGFHLECIDMWLNSHASCPVCRAPV 159
            + GR LPKC H FH++CID W  S ++CP+CRAPV
Sbjct: 135 EDEGRLLPKCGHSFHVDCIDTWFRSRSTCPLCRAPV 153

[Close]
BLAST of Cp4.1LG20g07950 vs. TAIR10
Match: AT1G72310.1 (AT1G72310.1 RING/U-box superfamily protein)

HSP 1 Score: 100.1 bits (248), Expect = 2.1e-21
Identity = 61/166 (36.75%), Postives = 87/166 (52.41%), Query Frame = 1 

Query: 20  SNIMLAALISLLLVVLFVLLLHAYANCFF----------PQPRHRRTSVTVSYVLGPPRL 79
           S I+L A+I L + VLFVL+LH YA  ++           Q +  +        + PP +
Sbjct: 22  SKIILTAIIVLFMAVLFVLILHLYAKLYWWRIDQLQQQQQQQQQEQEQEEDQSSIAPPVV 81

Query: 80  SR-----FDSVPFDSGAAPSKGLDPSVISAIPLFVYESEEKKCAAVMECVICLSEFEERE 139
           +R     F  VP    A  + GL    +S++P+  +  +   C   +EC ICLSE  + +
Sbjct: 82  TRRQRRRFIFVP-GQDALSNTGLTSFELSSLPIVFFRQDS--CKDGLECSICLSELVKGD 141

Query: 140 LGRRLPKCSHGFHLECIDMWLNSHASCPVCRAPVLGDATDCSDAVE 171
             R LPKC+H FH+ECIDMW  SH++CP+CR  VLG     S  VE
Sbjct: 142 KARLLPKCNHSFHVECIDMWFQSHSTCPICRNTVLGPEQASSKRVE 184

[Close]
BLAST of Cp4.1LG20g07950 vs. TAIR10
Match: AT3G16720.1 (AT3G16720.1 TOXICOS EN LEVADURA 2)

HSP 1 Score: 95.5 bits (236), Expect = 5.2e-20
Identity = 80/260 (30.77%), Postives = 121/260 (46.54%), Query Frame = 1 

Query: 16  FSYNSNIMLAALISLLLVVLFVLLLHAYANCFFPQPRHR--------RTSVTVSYVLGPP 75
           ++ +  IML+A++ L  VV+ ++ LH YA  +  + R R        R +  V +   P 
Sbjct: 24  YAMSGKIMLSAIVILFFVVILMVFLHLYARWYLLRARRRHLRRRSRNRRATMVFFTADPS 83

Query: 76  RLSRFDSVPFDSGAAPSKGLDPSVISAIPLFVYESEEKKCAAVMECVICLSEFEERELGR 135
             +        +    S+GLDP+VI ++P+F +  E  K    +EC +CLSEFEE E GR
Sbjct: 84  TAA--------TSVVASRGLDPNVIKSLPVFTFSDETHKDP--IECAVCLSEFEESETGR 143

Query: 136 RLPKCSHGFHLECIDMWLNSHASCPVCRAPVLGDATDCSDAVESGRLSGEREIGGEIVTE 195
            LP C H FH++CIDMW +SH++CP+CR+ V     +    +ES   + ERE+   + ++
Sbjct: 144 VLPNCQHTFHVDCIDMWFHSHSTCPLCRSLV-----ESLAGIESTAAAREREVVIAVDSD 203

Query: 196 ERRNCEIQRNEGQNGQFHSDSSSSSSSSSSS-------------SSLSSSSSSTDQPL-- 248
                E   + G   + H   SS      S              S      +  D P   
Sbjct: 204 PVLVIEPSSSSGLTDEPHGSGSSQMLREDSGRKPAAIEVPRRTFSEFEDELTRRDSPASQ 263

[Close]
BLAST of Cp4.1LG20g07950 vs. TAIR10
Match: AT3G62690.1 (AT3G62690.1 AtL5)

HSP 1 Score: 92.8 bits (229), Expect = 3.3e-19
Identity = 79/219 (36.07%), Postives = 111/219 (50.68%), Query Frame = 1 

Query: 14  SVFSYNSNIMLAALISLLLVVLFVLLLHAYANCFFPQPRHRRTSVTVSYVLGPPRLSRFD 73
           S +S N  IMLA++I L + V+ +L  H+YA   F + ++RR    +S  L     +R D
Sbjct: 20  SRYSLNGKIMLASVIILFVAVILILCFHSYARWLFRR-QNRRIRRRISAHLRSLAAAR-D 79

Query: 74  SVPFDSGAAPSKGLDPSVISAIPLFVYESEEKKCAAVMECVICLSEFEERELGRRLPKCS 133
                S  +P   LDP+V+  IP+FVY  +  + + + EC +CLSEFEE + GR LPKC 
Sbjct: 80  PTQSSSSLSP---LDPTVLEKIPIFVYSVKTHE-SPLEECSVCLSEFEEDDEGRVLPKCG 139

Query: 134 HGFHLECIDMWLNSHASCPVCRAPVLGDATDCSDAVESGRLSGEREIGGEIVTEERRNCE 193
           H FH++CID W  S +SCP+CRAPV                        + VTE      
Sbjct: 140 HVFHVDCIDTWFRSRSSCPLCRAPVQ---------------------PAQPVTEPEPVAA 199

Query: 194 IQRNEGQNGQFHSDSSSSSSSSSSSSSLSSSSSSTDQPL 233
           +  +        + SSSSS  S SS+  SSS S    P+
Sbjct: 200 VFPSVKPIEDTEAGSSSSSDESESSTPSSSSGSPVRFPM 211

[Close]
BLAST of Cp4.1LG20g07950 vs. NCBI nr
Match: gi|659115015|ref|XP_008457344.1| (PREDICTED: RING-H2 finger protein ATL63 isoform X1 [Cucumis melo])

HSP 1 Score: 368.2 bits (944), Expect = 1.2e-98
Identity = 213/263 (80.99%), Postives = 224/263 (85.17%), Query Frame = 1 

Query: 4   NSTSLIGFAQSVFSYNSNIMLAALISLLLVVLFVLLLHAYANCFFPQPRHRR-TSVTVSY 63
           NSTSL  FAQS+FSYNSNIMLAALISLLLVVLFVLLLHAYANCFFP PRHRR TSVTVSY
Sbjct: 5   NSTSLTQFAQSIFSYNSNIMLAALISLLLVVLFVLLLHAYANCFFPHPRHRRRTSVTVSY 64

Query: 64  VLGPPRLSRFDSV-PFDSGAAPSKGLDPSVISAIPLFVYESEEKKCAAVMECVICLSEFE 123
           VL PPRLSRFDSV PFD G+APSKGLDPSVISAIPLFVYESEEKKCAA MECVICLSEFE
Sbjct: 65  VLAPPRLSRFDSVVPFDLGSAPSKGLDPSVISAIPLFVYESEEKKCAATMECVICLSEFE 124

Query: 124 ERELGRRLPKCSHGFHLECIDMWLNSHASCPVCRAPVLGDATDCSDAVESGRLSGEREIG 183
           ERELGRRLPKC HGFHLECIDMWLNSHA+CPVCR PV+G+A DCSDA E    SGE EIG
Sbjct: 125 ERELGRRLPKCRHGFHLECIDMWLNSHANCPVCREPVIGEAVDCSDAAE----SGEGEIG 184

Query: 184 GEIVTEERRNCEIQRNEGQNGQFHSDSSSSSSSSSSSSSLSSSSSSTDQPLM-SLGASLK 243
            E V           NEGQ+GQF+SDSSSSSSSSSSS   SSSSS    PLM S+GASL 
Sbjct: 185 RETV-----------NEGQSGQFNSDSSSSSSSSSSS---SSSSSIDPPPLMSSIGASLI 244

Query: 244 RMLSRNRSDGRIFPSSDGDELDV 264
           R+LSRNRSDGRIFPSS+G+ELDV
Sbjct: 245 RILSRNRSDGRIFPSSNGEELDV 249

[Close]
BLAST of Cp4.1LG20g07950 vs. NCBI nr
Match: gi|659115017|ref|XP_008457345.1| (PREDICTED: RING-H2 finger protein ATL63 isoform X2 [Cucumis melo])

HSP 1 Score: 356.7 bits (914), Expect = 3.5e-95
Identity = 203/263 (77.19%), Postives = 214/263 (81.37%), Query Frame = 1 

Query: 4   NSTSLIGFAQSVFSYNSNIMLAALISLLLVVLFVLLLHAYANCFFPQPRHRR-TSVTVSY 63
           NSTSL  FAQS+FSYNSNIMLAALISLLLVVLFVLLLHAYANCFFP PRHRR TSVTVSY
Sbjct: 5   NSTSLTQFAQSIFSYNSNIMLAALISLLLVVLFVLLLHAYANCFFPHPRHRRRTSVTVSY 64

Query: 64  VLGPPRLSRFDSV-PFDSGAAPSKGLDPSVISAIPLFVYESEEKKCAAVMECVICLSEFE 123
           VL PPRLSRFDSV PFD G+APSKGLDPSVISAIPLFVYESEEKKCAA MECVICLSEFE
Sbjct: 65  VLAPPRLSRFDSVVPFDLGSAPSKGLDPSVISAIPLFVYESEEKKCAATMECVICLSEFE 124

Query: 124 ERELGRRLPKCSHGFHLECIDMWLNSHASCPVCRAPVLGDATDCSDAVESGRLSGEREIG 183
           ERELGRRLPKC HGFHLECIDMWLNSHA+CPVCR PV+G+A DCSDA E    SGE EIG
Sbjct: 125 ERELGRRLPKCRHGFHLECIDMWLNSHANCPVCREPVIGEAVDCSDAAE----SGEGEIG 184

Query: 184 GEIVTEERRNCEIQRNEGQNGQFHSDSSSSSSSSSSSSSLSSSSSSTDQPLM-SLGASLK 243
            E V           NEGQ+GQF+SDSSSSSS                 PLM S+GASL 
Sbjct: 185 RETV-----------NEGQSGQFNSDSSSSSSID-------------PPPLMSSIGASLI 239

Query: 244 RMLSRNRSDGRIFPSSDGDELDV 264
           R+LSRNRSDGRIFPSS+G+ELDV
Sbjct: 245 RILSRNRSDGRIFPSSNGEELDV 239

[Close]
BLAST of Cp4.1LG20g07950 vs. NCBI nr
Match: gi|449455140|ref|XP_004145311.1| (PREDICTED: RING-H2 finger protein ATL63 [Cucumis sativus])

HSP 1 Score: 343.6 bits (880), Expect = 3.1e-91
Identity = 201/266 (75.56%), Postives = 214/266 (80.45%), Query Frame = 1 

Query: 4   NSTSLIGFAQSVFSYNSNIMLAALISLLLVVLFVLLLHAYANCFFPQPRH-RRTSVTVSY 63
           NSTSL  FAQ++FSYNSNIMLAALISLLLVVLFVLLLHAYANCFFP PRH RRTSVTVSY
Sbjct: 5   NSTSLTQFAQTIFSYNSNIMLAALISLLLVVLFVLLLHAYANCFFPHPRHHRRTSVTVSY 64

Query: 64  VLGPPRLSRFDSVPFDSGAAPS--KGLDPSVISAIPLFVYESEEKKCAAV---MECVICL 123
           VL PPRLSRFDSVPFD G+APS  KGLDPSVISAIPLFVYESEEKKCAA    MECVICL
Sbjct: 65  VLAPPRLSRFDSVPFDLGSAPSNSKGLDPSVISAIPLFVYESEEKKCAAAAAAMECVICL 124

Query: 124 SEFEERELGRRLPKCSHGFHLECIDMWLNSHASCPVCRAPVLGDATDCSDAVESGRLSGE 183
           SEFEERELGRRLPKC HGFHLECIDMWLNSHA+CPVCR PV+G+A DCSDAVE    SGE
Sbjct: 125 SEFEERELGRRLPKCRHGFHLECIDMWLNSHANCPVCREPVIGEAVDCSDAVE----SGE 184

Query: 184 REIGGEIVTEERRNCEIQRNEGQNGQFHSDSSSSSSSSSSSSSLSSSSSSTDQPLMSLGA 243
            EIG E V           NEGQ+ QF+SDSSSSS+SS     L S          S+GA
Sbjct: 185 GEIGRETV-----------NEGQSVQFNSDSSSSSTSSVDPPPLMS----------SIGA 244

Query: 244 SLKRMLSRNRSDGRIFPSSDGDELDV 264
           SL R+LSRNRSDGRIFPSS+G+EL V
Sbjct: 245 SLIRILSRNRSDGRIFPSSNGEELGV 245

[Close]
BLAST of Cp4.1LG20g07950 vs. NCBI nr
Match: gi|700210733|gb|KGN65829.1| (hypothetical protein Csa_1G532370 [Cucumis sativus])

HSP 1 Score: 343.6 bits (880), Expect = 3.1e-91
Identity = 201/266 (75.56%), Postives = 214/266 (80.45%), Query Frame = 1 

Query: 4   NSTSLIGFAQSVFSYNSNIMLAALISLLLVVLFVLLLHAYANCFFPQPRH-RRTSVTVSY 63
           NSTSL  FAQ++FSYNSNIMLAALISLLLVVLFVLLLHAYANCFFP PRH RRTSVTVSY
Sbjct: 63  NSTSLTQFAQTIFSYNSNIMLAALISLLLVVLFVLLLHAYANCFFPHPRHHRRTSVTVSY 122

Query: 64  VLGPPRLSRFDSVPFDSGAAPS--KGLDPSVISAIPLFVYESEEKKCAAV---MECVICL 123
           VL PPRLSRFDSVPFD G+APS  KGLDPSVISAIPLFVYESEEKKCAA    MECVICL
Sbjct: 123 VLAPPRLSRFDSVPFDLGSAPSNSKGLDPSVISAIPLFVYESEEKKCAAAAAAMECVICL 182

Query: 124 SEFEERELGRRLPKCSHGFHLECIDMWLNSHASCPVCRAPVLGDATDCSDAVESGRLSGE 183
           SEFEERELGRRLPKC HGFHLECIDMWLNSHA+CPVCR PV+G+A DCSDAVE    SGE
Sbjct: 183 SEFEERELGRRLPKCRHGFHLECIDMWLNSHANCPVCREPVIGEAVDCSDAVE----SGE 242

Query: 184 REIGGEIVTEERRNCEIQRNEGQNGQFHSDSSSSSSSSSSSSSLSSSSSSTDQPLMSLGA 243
            EIG E V           NEGQ+ QF+SDSSSSS+SS     L S          S+GA
Sbjct: 243 GEIGRETV-----------NEGQSVQFNSDSSSSSTSSVDPPPLMS----------SIGA 302

Query: 244 SLKRMLSRNRSDGRIFPSSDGDELDV 264
           SL R+LSRNRSDGRIFPSS+G+EL V
Sbjct: 303 SLIRILSRNRSDGRIFPSSNGEELGV 303

[Close]
BLAST of Cp4.1LG20g07950 vs. NCBI nr
Match: gi|743796012|ref|XP_011003837.1| (PREDICTED: RING-H2 finger protein ATL63-like [Populus euphratica])

HSP 1 Score: 201.8 bits (512), Expect = 1.4e-48
Identity = 130/256 (50.78%), Postives = 162/256 (63.28%), Query Frame = 1 

Query: 14  SVFSYNSNIMLAALISLLLVVLFVLLLHAYANCFFPQPRHRR--TSVTVSYVLGPPRLSR 73
           S+ SY+SNIMLAA+ISLLLV+LFVLLLH YA  F  Q R+RR  +SVT S+VL P R   
Sbjct: 19  SISSYDSNIMLAAVISLLLVILFVLLLHIYAKWFLAQARNRRRSSSVTASHVLLPSRFHH 78

Query: 74  FDSVPFDSGAAPS--KGLDPSVISAIPLFVYESEEKKCAAVMECVICLSEFEERELGRRL 133
             +   D+  +PS  KGLD SVIS+IPLFVY++EE  C   +ECVICLS FEE E GR L
Sbjct: 79  LHNFTIDTTFSPSTSKGLDTSVISSIPLFVYKAEE--CKQGLECVICLSPFEENEAGRSL 138

Query: 134 PKCSHGFHLECIDMWLNSHASCPVCRAPVLGDATDCSD---AVESGRLSGEREIGGEIVT 193
            +C HGFH+ECIDMWLNSH++CPVCRAP +GD  D +    ++E+       + G   V 
Sbjct: 139 TRCGHGFHVECIDMWLNSHSNCPVCRAPAVGDDNDIASDGKSMEASTRESTDDRGLNGVG 198

Query: 194 EERRNCEIQRNEGQNGQFHSDSSSSSSSSSSSSSLSSSSSSTDQPLMSLGASLKRMLSRN 253
           + R    I  +E  N   + D  S S S+SS                SLG+SLKRMLSRN
Sbjct: 199 DSRLEIVISNSENGNLAVNCDCLSESPSTSS----------------SLGSSLKRMLSRN 256

Query: 254 RSDGRIFPSSDGDELD 263
           RS+ + FPS +  ELD
Sbjct: 259 RSESKAFPSINVIELD 256

The following BLAST results are available for this feature:
BLAST of Cp4.1LG20g07950 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATL63_ARATH1.1e-3548.02RING-H2 finger protein ATL63 OS=Arabidopsis thaliana GN=ATL63 PE=2 SV=1[more]
ATL64_ARATH2.6e-2138.46RING-H2 finger protein ATL64 OS=Arabidopsis thaliana GN=ATL64 PE=2 SV=1[more]
ATL3_ARATH3.7e-2036.75RING-H2 finger protein ATL3 OS=Arabidopsis thaliana GN=ATL3 PE=2 SV=1[more]
ATL2_ARATH9.2e-1930.77RING-H2 finger protein ATL2 OS=Arabidopsis thaliana GN=ATL2 PE=2 SV=2[more]
ATL5_ARATH5.9e-1836.07RING-H2 finger protein ATL5 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=1[more]
BLAST of Cp4.1LG20g07950 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LXP0_CUCSA2.1e-9175.56Uncharacterized protein OS=Cucumis sativus GN=Csa_1G532370 PE=4 SV=1[more]
D7SJU6_VITVI1.9e-4747.71Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g06930 PE=4 SV=... [more]
A0A061GXF4_THECC5.2e-4548.43Toxicos en levadura 2, putative OS=Theobroma cacao GN=TCM_042177 PE=4 SV=1[more]
B9HND1_POPTR1.2e-4449.39Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0009s07800g P... [more]
B9GGQ3_POPTR2.0e-4450.97Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0001s28610g P... [more]
BLAST of Cp4.1LG20g07950 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G58580.16.1e-3748.02 TOXICOS EN LEVADURA 63[more]
AT2G47560.11.5e-2238.46 RING/U-box superfamily protein[more]
AT1G72310.12.1e-2136.75 RING/U-box superfamily protein[more]
AT3G16720.15.2e-2030.77 TOXICOS EN LEVADURA 2[more]
AT3G62690.13.3e-1936.07 AtL5[more]
BLAST of Cp4.1LG20g07950 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659115015|ref|XP_008457344.1|1.2e-9880.99PREDICTED: RING-H2 finger protein ATL63 isoform X1 [Cucumis melo][more]
gi|659115017|ref|XP_008457345.1|3.5e-9577.19PREDICTED: RING-H2 finger protein ATL63 isoform X2 [Cucumis melo][more]
gi|449455140|ref|XP_004145311.1|3.1e-9175.56PREDICTED: RING-H2 finger protein ATL63 [Cucumis sativus][more]
gi|700210733|gb|KGN65829.1|3.1e-9175.56hypothetical protein Csa_1G532370 [Cucumis sativus][more]
gi|743796012|ref|XP_011003837.1|1.4e-4850.78PREDICTED: RING-H2 finger protein ATL63-like [Populus euphratica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009987 cellular process
biological_process GO:0042732 D-xylose metabolic process
biological_process GO:0006970 response to osmotic stress
biological_process GO:0050794 regulation of cellular process
biological_process GO:0043609 regulation of carbon utilization
biological_process GO:0006013 mannose metabolic process
biological_process GO:0006000 fructose metabolic process
biological_process GO:0050789 regulation of biological process
biological_process GO:0006003 fructose 2,6-bisphosphate metabolic process
biological_process GO:0006002 fructose 6-phosphate metabolic process
biological_process GO:0046835 carbohydrate phosphorylation
biological_process GO:0008150 biological_process
cellular_component GO:0044464 cell part
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005768 endosome
cellular_component GO:0044444 cytoplasmic part
cellular_component GO:0012505 endomembrane system
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005829 cytosol
cellular_component GO:0043231 intracellular membrane-bounded organelle
cellular_component GO:0005575 cellular_component
molecular_function GO:0003873 6-phosphofructo-2-kinase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:2001070 starch binding
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG20g07950.1Cp4.1LG20g07950.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 112..155
score: 1.7
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 113..154
score: 1.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 113..155
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 111..158
score: 6.0
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 14..180
score: 2.8
NoneNo IPR availablePANTHERPTHR14155:SF135RING-H2 FINGER PROTEIN ATL63coord: 14..180
score: 2.8
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 112..159
score: 3.03

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG20g07950Cucsa.139340Cucumber (Gy14) v1cgycpeB0376
Cp4.1LG20g07950Cucsa.151710Cucumber (Gy14) v1cgycpeB0405
Cp4.1LG20g07950CmaCh02G007360Cucurbita maxima (Rimu)cmacpeB636
Cp4.1LG20g07950CmaCh13G000500Cucurbita maxima (Rimu)cmacpeB235
Cp4.1LG20g07950CmaCh01G006860Cucurbita maxima (Rimu)cmacpeB483
Cp4.1LG20g07950CmoCh01G007140Cucurbita moschata (Rifu)cmocpeB441
Cp4.1LG20g07950CmoCh13G000410Cucurbita moschata (Rifu)cmocpeB202
Cp4.1LG20g07950CmoCh02G007410Cucurbita moschata (Rifu)cmocpeB586
Cp4.1LG20g07950Cla013373Watermelon (97103) v1cpewmB526
Cp4.1LG20g07950Cla008146Watermelon (97103) v1cpewmB507
Cp4.1LG20g07950Csa1G532370Cucumber (Chinese Long) v2cpecuB507
Cp4.1LG20g07950MELO3C020529Melon (DHL92) v3.5.1cpemeB479
Cp4.1LG20g07950ClCG02G019440Watermelon (Charleston Gray)cpewcgB462
Cp4.1LG20g07950ClCG03G000540Watermelon (Charleston Gray)cpewcgB467
Cp4.1LG20g07950CSPI01G24090Wild cucumber (PI 183967)cpecpiB507
Cp4.1LG20g07950Lsi10G014440Bottle gourd (USVL1VR-Ls)cpelsiB412
Cp4.1LG20g07950Lsi02G012600Bottle gourd (USVL1VR-Ls)cpelsiB422
Cp4.1LG20g07950MELO3C020529.2Melon (DHL92) v3.6.1cpemedB561
Cp4.1LG20g07950CsaV3_1G036400Cucumber (Chinese Long) v3cpecucB0625
Cp4.1LG20g07950Bhi08G000400Wax gourdcpewgoB0650
Cp4.1LG20g07950Bhi10G000644Wax gourdcpewgoB0628
Cp4.1LG20g07950CsGy1G023570Cucumber (Gy14) v2cgybcpeB071
Cp4.1LG20g07950Carg07055Silver-seed gourdcarcpeB0737
Cp4.1LG20g07950Carg26032Silver-seed gourdcarcpeB0877
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG20g07950Cp4.1LG02g11910Cucurbita pepo (Zucchini)cpecpeB430
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG20g07950Cucumber (Gy14) v2cgybcpeB818
Cp4.1LG20g07950Silver-seed gourdcarcpeB0942
Cp4.1LG20g07950Cucurbita pepo (Zucchini)cpecpeB387
Cp4.1LG20g07950Cucurbita pepo (Zucchini)cpecpeB444
Cp4.1LG20g07950Cucurbita maxima (Rimu)cmacpeB742
Cp4.1LG20g07950Cucurbita moschata (Rifu)cmocpeB694
Cp4.1LG20g07950Cucurbita moschata (Rifu)cmocpeB695