CSPI01G24090 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G24090
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionRING-H2 finger protein ATL2
LocationChr1 : 19500240 .. 19501218 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTAAATGTTACGTTACCAAAAAACGGAGAGCCCATTTGGGTTCACGGAGAAAAAGATTCGTTGCATTCTCATAATAAATAAACTAAACACTCTCTCAACTCTTCTTCTACCTCCTTCCTCCGGCCACTGCCTACCGCGGCTCCTTCTCTGCAACTTTCTCAACCTTCCACCACCAACAATGACACCCACTAATTCCACTTCACTCACCCAATTCGCTCAAACCATTTTCTCCTACAACAGTAACATCATGCTCGCCGCTCTCATTTCTCTTCTCTTAGTCGTCCTCTTCGTCCTTCTCCTCCACGCTTACGCCAATTGCTTCTTCCCTCACCCTCGCCACCACCGCCGTACCTCTGTCACCGTCTCCTACGTCCTTGCTCCCCCTCGTCTCTCGCGTTTCGATTCCGTTCCCTTTGATTTAGGTTCCGCTCCGTCCAACTCCAAAGGCCTGGATCCGTCTGTTATCTCTGCCATTCCTCTGTTCGTCTACGAATCTGAGGAGAAGAAATGTGCGGCGGCGGCAGCGGCAGCGGCGATGGAGTGCGTGATTTGCCTCAGTGAATTCGAAGAACGAGAACTTGGACGACGGCTGCCCAAATGTAGGCATGGGTTTCATCTGGAGTGTATTGATATGTGGTTGAATTCTCACGCGAATTGTCCTGTTTGTAGAGAGCCGGTGATTGGCGAGGCTGTTGATTGTTCCGATGCGGTGGAATCAGGCGAGGGAGAAATCGGAAGGGAGACTGTGAATGAGGGGCAAAGCGTTCAATTTAACTCTGATTCCTCCTCCTCTTCTTCTTCTTCGGTTGACCCACCGCCATTGATGTCGTCGATTGGAGCGTCATTGATTCGAATATTGAGTAGAAACAGATCAGACGGAAGGATTTTCCCGTCCTCCAATGGCGAAGAATTGGGTGTTTGAATTATGGAAGAAGCATCGCGCCATTTTTGTACAGATTTTCAAGAAATTAAAACTCCC

mRNA sequence

ATGTTACGTTACCAAAAAACGGAGAGCCCATTTGGGTTCACGGAGAAAAAGATTCGTTGCATTCTCATAATAAATAAACTAAACACTCTCTCAACTCTTCTTCTACCTCCTTCCTCCGGCCACTGCCTACCGCGGCTCCTTCTCTGCAACTTTCTCAACCTTCCACCACCAACAATGACACCCACTAATTCCACTTCACTCACCCAATTCGCTCAAACCATTTTCTCCTACAACAGTAACATCATGCTCGCCGCTCTCATTTCTCTTCTCTTAGTCGTCCTCTTCGTCCTTCTCCTCCACGCTTACGCCAATTGCTTCTTCCCTCACCCTCGCCACCACCGCCGTACCTCTGTCACCGTCTCCTACGTCCTTGCTCCCCCTCGTCTCTCGCGTTTCGATTCCGTTCCCTTTGATTTAGGTTCCGCTCCGTCCAACTCCAAAGGCCTGGATCCGTCTGTTATCTCTGCCATTCCTCTGTTCGTCTACGAATCTGAGGAGAAGAAATGTGCGGCGGCGGCAGCGGCAGCGGCGATGGAGTGCGTGATTTGCCTCAGTGAATTCGAAGAACGAGAACTTGGACGACGGCTGCCCAAATGTAGGCATGGGTTTCATCTGGAGTGTATTGATATGTGGTTGAATTCTCACGCGAATTGTCCTGTTTGTAGAGAGCCGGTGATTGGCGAGGCTGTTGATTGTTCCGATGCGGTGGAATCAGGCGAGGGAGAAATCGGAAGGGAGACTGTGAATGAGGGGCAAAGCGTTCAATTTAACTCTGATTCCTCCTCCTCTTCTTCTTCTTCGGTTGACCCACCGCCATTGATGTCGTCGATTGGAGCGTCATTGATTCGAATATTGAGTAGAAACAGATCAGACGGAAGGATTTTCCCGTCCTCCAATGGCGAAGAATTGGGTGTTTGA

Coding sequence (CDS)

ATGTTACGTTACCAAAAAACGGAGAGCCCATTTGGGTTCACGGAGAAAAAGATTCGTTGCATTCTCATAATAAATAAACTAAACACTCTCTCAACTCTTCTTCTACCTCCTTCCTCCGGCCACTGCCTACCGCGGCTCCTTCTCTGCAACTTTCTCAACCTTCCACCACCAACAATGACACCCACTAATTCCACTTCACTCACCCAATTCGCTCAAACCATTTTCTCCTACAACAGTAACATCATGCTCGCCGCTCTCATTTCTCTTCTCTTAGTCGTCCTCTTCGTCCTTCTCCTCCACGCTTACGCCAATTGCTTCTTCCCTCACCCTCGCCACCACCGCCGTACCTCTGTCACCGTCTCCTACGTCCTTGCTCCCCCTCGTCTCTCGCGTTTCGATTCCGTTCCCTTTGATTTAGGTTCCGCTCCGTCCAACTCCAAAGGCCTGGATCCGTCTGTTATCTCTGCCATTCCTCTGTTCGTCTACGAATCTGAGGAGAAGAAATGTGCGGCGGCGGCAGCGGCAGCGGCGATGGAGTGCGTGATTTGCCTCAGTGAATTCGAAGAACGAGAACTTGGACGACGGCTGCCCAAATGTAGGCATGGGTTTCATCTGGAGTGTATTGATATGTGGTTGAATTCTCACGCGAATTGTCCTGTTTGTAGAGAGCCGGTGATTGGCGAGGCTGTTGATTGTTCCGATGCGGTGGAATCAGGCGAGGGAGAAATCGGAAGGGAGACTGTGAATGAGGGGCAAAGCGTTCAATTTAACTCTGATTCCTCCTCCTCTTCTTCTTCTTCGGTTGACCCACCGCCATTGATGTCGTCGATTGGAGCGTCATTGATTCGAATATTGAGTAGAAACAGATCAGACGGAAGGATTTTCCCGTCCTCCAATGGCGAAGAATTGGGTGTTTGA
Homology
[Close]
BLAST of CSPI01G24090 vs. Swiss-Prot
Match: ATL63_ARATH (RING-H2 finger protein ATL63 OS=Arabidopsis thaliana GN=ATL63 PE=2 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 4.0e-34
Identity = 86/183 (46.99%), Postives = 111/183 (60.66%), Query Frame = 1 

Query: 65  TSLTQFAQTIFSYNSNIMLAALISLLLVVLFVLLLHAYANCFFPHPRH------------ 124
           +SL+ F + + SYNSN++LAAL+ LLLVVLFVLLLH YA  FF  P H            
Sbjct: 13  SSLSSFLKILSSYNSNVLLAALVFLLLVVLFVLLLHFYAR-FFWSPSHQDFSAAARHRRR 72

Query: 125 ---HRRTSVTVSYVLAPPRLSRFDS-VPFDLGSAPSNSKGLDPSVISAIPLFVYESEEKK 184
              +RR +VT + ++    L  FD  V     +A  + KGLD SVIS+IPLFVYE  E++
Sbjct: 73  RRRNRRRTVTTTRIIPSLPLGGFDDGVSSPAATATRDDKGLDSSVISSIPLFVYEENEEE 132

Query: 185 CAAAAAAAAMECVICLSEFEERELGRRLPKCRHGFHLECIDMWLNSHANCPVCREPVIGE 232
                     ECVICL  +E  + GR+L  C HGFH+ECIDMWL+SH+ CP+CR PV+  
Sbjct: 133 -----EDEEEECVICLGLWEAGDFGRKLRNCGHGFHVECIDMWLSSHSTCPLCRSPVLAA 189

[Close]
BLAST of CSPI01G24090 vs. Swiss-Prot
Match: ATL2_ARATH (RING-H2 finger protein ATL2 OS=Arabidopsis thaliana GN=ATL2 PE=2 SV=2)

HSP 1 Score: 107.1 bits (266), Expect = 3.5e-22
Identity = 73/203 (35.96%), Postives = 102/203 (50.25%), Query Frame = 1 

Query: 75  FSYNSNIMLAALISLLLVVLFVLLLHAYANCFF--PHPRHHRRTS----VTVSYVLAPPR 134
           ++ +  IML+A++ L  VV+ ++ LH YA  +      RH RR S     T+ +  A P 
Sbjct: 24  YAMSGKIMLSAIVILFFVVILMVFLHLYARWYLLRARRRHLRRRSRNRRATMVFFTADPS 83

Query: 135 LSRFDSVPFDLGSAPSNSKGLDPSVISAIPLFVYESEEKKCAAAAAAAAMECVICLSEFE 194
            +    V          S+GLDP+VI ++P+F +  E  K         +EC +CLSEFE
Sbjct: 84  TAATSVVA---------SRGLDPNVIKSLPVFTFSDETHK-------DPIECAVCLSEFE 143

Query: 195 ERELGRRLPKCRHGFHLECIDMWLNSHANCPVCREPVIGEAVDCSDAVESGEGEIGRETV 254
           E E GR LP C+H FH++CIDMW +SH+ CP+CR       V+    +ES      RE V
Sbjct: 144 ESETGRVLPNCQHTFHVDCIDMWFHSHSTCPLCR-----SLVESLAGIESTAAAREREVV 203

Query: 255 NEGQSVQFNSDSSSSSSSSVDPP 272
               S        SSSS   D P
Sbjct: 204 IAVDSDPVLVIEPSSSSGLTDEP 205

[Close]
BLAST of CSPI01G24090 vs. Swiss-Prot
Match: ATL64_ARATH (RING-H2 finger protein ATL64 OS=Arabidopsis thaliana GN=ATL64 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.9e-20
Identity = 60/157 (38.22%), Postives = 82/157 (52.23%), Query Frame = 1 

Query: 75  FSYNSNIMLAALISLLLVVLFVLLLHAYANCFFPHPRHHRRTSVTVSYVLAPPRLSRFDS 134
           ++ N  IML+++I L + V+ +L  H+YA   F   RH+RR    +   L          
Sbjct: 22  YALNGKIMLSSVIVLFVAVIMILCFHSYARWLFR--RHNRRIRRRIRSHLRTL------- 81

Query: 135 VPFDLGSAPSNSKGLDPSVISAIPLFVYES------EEKKCAAAAAAAAMECVICLSEFE 194
                 SA    + LD +V+  IP+FVY S      EEK+          EC +CLSEFE
Sbjct: 82  ------SASPRDQALDQAVLDKIPIFVYSSKNPPPPEEKE----------ECSVCLSEFE 141

Query: 195 ERELGRRLPKCRHGFHLECIDMWLNSHANCPVCREPV 226
           E + GR LPKC H FH++CID W  S + CP+CR PV
Sbjct: 142 EEDEGRLLPKCGHSFHVDCIDTWFRSRSTCPLCRAPV 153

[Close]
BLAST of CSPI01G24090 vs. Swiss-Prot
Match: ATL5_ARATH (RING-H2 finger protein ATL5 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 9.6e-20
Identity = 72/199 (36.18%), Postives = 104/199 (52.26%), Query Frame = 1 

Query: 75  FSYNSNIMLAALISLLLVVLFVLLLHAYANCFFPHPRHHRRTSVTVSYVLAPPRLSRFDS 134
           +S N  IMLA++I L + V+ +L  H+YA   F   R +RR    +S  L     +R   
Sbjct: 22  YSLNGKIMLASVIILFVAVILILCFHSYARWLFR--RQNRRIRRRISAHLRSLAAAR--- 81

Query: 135 VPFDLGSAPSNSKGLDPSVISAIPLFVYESEEKKCAAAAAAAAMECVICLSEFEERELGR 194
              D   + S+   LDP+V+  IP+FVY  +  +      +   EC +CLSEFEE + GR
Sbjct: 82  ---DPTQSSSSLSPLDPTVLEKIPIFVYSVKTHE------SPLEECSVCLSEFEEDDEGR 141

Query: 195 RLPKCRHGFHLECIDMWLNSHANCPVCREPV-IGEAVDCSDAVESGEGEIG--RETVNEG 254
            LPKC H FH++CID W  S ++CP+CR PV   + V   + V +    +    +T    
Sbjct: 142 VLPKCGHVFHVDCIDTWFRSRSSCPLCRAPVQPAQPVTEPEPVAAVFPSVKPIEDTEAGS 201

Query: 255 QSVQFNSDSSSSSSSSVDP 271
            S    S+SS+ SSSS  P
Sbjct: 202 SSSSDESESSTPSSSSGSP 206

[Close]
BLAST of CSPI01G24090 vs. Swiss-Prot
Match: ATL65_ARATH (RING-H2 finger protein ATL65 OS=Arabidopsis thaliana GN=ATL65 PE=2 SV=2)

HSP 1 Score: 95.5 bits (236), Expect = 1.1e-18
Identity = 49/106 (46.23%), Postives = 60/106 (56.60%), Query Frame = 1 

Query: 129 LSRFDSVPFDLGSAPSNSK-GLDPSVISAIPLFVYESE----EKKCAAAAAAAAMECVIC 188
           L  F   PFD     S S  GLD SVI  +PLF+Y +     +      +AA   +C +C
Sbjct: 100 LRSFSPFPFDSFHYSSYSPYGLDDSVIKTLPLFLYSAAACTGKPAVGKTSAANCRDCAVC 159

Query: 189 LSEFEERELGRRLPKCRHGFHLECIDMWLNSHANCPVCREPVIGEA 230
           L EFEE +  R LP C H FHLECID WL SH NCP+CR  ++G A
Sbjct: 160 LLEFEEGDYVRTLPLCFHAFHLECIDEWLRSHPNCPLCRTAILGSA 205

[Close]
BLAST of CSPI01G24090 vs. TrEMBL
Match: A0A0A0LXP0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G532370 PE=4 SV=1)

HSP 1 Score: 590.5 bits (1521), Expect = 1.2e-165
Identity = 302/305 (99.02%), Postives = 303/305 (99.34%), Query Frame = 1 

Query: 1   MLRYQKTESPFGFTEKKIRCILIINKLNTLSTLLLPPSSGHCLPRLLLCNFLNLPPPTMT 60
           MLRYQKTESPFGFTEKKIRCILIINKLNTLSTLLLPPSSGHCLPRLLLCNFLNLPPPTMT
Sbjct: 1   MLRYQKTESPFGFTEKKIRCILIINKLNTLSTLLLPPSSGHCLPRLLLCNFLNLPPPTMT 60

Query: 61  PTNSTSLTQFAQTIFSYNSNIMLAALISLLLVVLFVLLLHAYANCFFPHPRHHRRTSVTV 120
           PTNSTSLTQFAQTIFSYNSNIMLAALISLLLVVLFVLLLHAYANCFFPHPRHHRRTSVTV
Sbjct: 61  PTNSTSLTQFAQTIFSYNSNIMLAALISLLLVVLFVLLLHAYANCFFPHPRHHRRTSVTV 120

Query: 121 SYVLAPPRLSRFDSVPFDLGSAPSNSKGLDPSVISAIPLFVYESEEKKCAAAAAAAAMEC 180
           SYVLAPPRLSRFDSVPFDLGSAPSNSKGLDPSVISAIPLFVYESEEKKC  AAAAAAMEC
Sbjct: 121 SYVLAPPRLSRFDSVPFDLGSAPSNSKGLDPSVISAIPLFVYESEEKKC--AAAAAAMEC 180

Query: 181 VICLSEFEERELGRRLPKCRHGFHLECIDMWLNSHANCPVCREPVIGEAVDCSDAVESGE 240
           VICLSEFEERELGRRLPKCRHGFHLECIDMWLNSHANCPVCREPVIGEAVDCSDAVESGE
Sbjct: 181 VICLSEFEERELGRRLPKCRHGFHLECIDMWLNSHANCPVCREPVIGEAVDCSDAVESGE 240

Query: 241 GEIGRETVNEGQSVQFNSDSSSSSSSSVDPPPLMSSIGASLIRILSRNRSDGRIFPSSNG 300
           GEIGRETVNEGQSVQFNSDSSSSS+SSVDPPPLMSSIGASLIRILSRNRSDGRIFPSSNG
Sbjct: 241 GEIGRETVNEGQSVQFNSDSSSSSTSSVDPPPLMSSIGASLIRILSRNRSDGRIFPSSNG 300

Query: 301 EELGV 306
           EELGV
Sbjct: 301 EELGV 303

[Close]
BLAST of CSPI01G24090 vs. TrEMBL
Match: D7SJU6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g06930 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.0e-48
Identity = 125/270 (46.30%), Postives = 165/270 (61.11%), Query Frame = 1 

Query: 54  LPPPTMTPTNSTSLTQFAQTIFSYNSNIMLAALISLLLVVLFVLLLHAYANCFFPHPRHH 113
           L PP  +  +S   T F +++FSYN N+MLAA++SLLLV+LFVL+LH YA  F  H RH 
Sbjct: 2   LSPPDESSISSP-FTDFMKSVFSYNGNVMLAAIVSLLLVILFVLVLHIYAKWFLAHARHR 61

Query: 114 RRTSVTVSYVLAPPRLSRFDSVPFDLGSAPSNSKGLDPSVISAIPLFVYESEEKKCAAAA 173
           RR+SV+VS+VL P R   F +  F+   + S +KGLD S IS+IPLFVY++EE K     
Sbjct: 62  RRSSVSVSHVLRPTRFHHFHTFTFETTLSGSPTKGLDSSAISSIPLFVYKAEEHK----- 121

Query: 174 AAAAMECVICLSEFEERELGRRLPKCRHGFHLECIDMWLNSHANCPVCREPVI------- 233
               +ECVICLS FE+ ++GR LPKC H FH++CIDMWL+SH+NCP+CR P         
Sbjct: 122 --HGLECVICLSVFEDDDVGRNLPKCGHAFHVQCIDMWLHSHSNCPICRAPAACEKKAVS 181

Query: 234 --GEAVDCSDAVESGEGEIG----------RETVNE------GQSVQFNSDSSSSSSSSV 293
              EA+    ++E  E  IG           E V E      G +V    DS S+SSS  
Sbjct: 182 QPDEAILQEGSIELSEAFIGDLGLIDEDSPMELVVEIPDSENGNAVTDIHDSLSASSSLS 241

Query: 294 DPPPLMSSIGASLIRILSRNRSDGRIFPSS 299
                 SS+G+SL R+LSRNRS+ ++ PSS
Sbjct: 242 SQ---SSSLGSSLKRMLSRNRSEHKVHPSS 260

[Close]
BLAST of CSPI01G24090 vs. TrEMBL
Match: W9QQP8_9ROSA (RING-H2 finger protein ATL2 OS=Morus notabilis GN=L484_011677 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 2.2e-47
Identity = 125/262 (47.71%), Postives = 161/262 (61.45%), Query Frame = 1 

Query: 59  MTPTNSTSLTQ------FAQTIFSYNSNIMLAALISLLLVVLFVLLLHAYANCFFPHP-- 118
           M+ ++  SLTQ        ++IF+Y+SN+MLAALISLL V+LFVLLLH YA  F      
Sbjct: 1   MSSSSDESLTQHHRVSHLVESIFAYDSNVMLAALISLLFVILFVLLLHVYAKWFLAQAHT 60

Query: 119 ---RHHRRTSVTVSYVLAPPRLSRFDSVPF-----DLGSAPSNSKGLDPSVISAIPLFVY 178
              R HR TSV VS VL+P R +      F      L +AP+NSKGLD S ISAIPLFVY
Sbjct: 61  QAHRRHRSTSVAVSRVLSPARFNNLPPSSFVIDLASLSTAPANSKGLDASAISAIPLFVY 120

Query: 179 ESEEKKCAAAAAAAAMECVICLSEFEERELGRRLPKCRHGFHLECIDMWLNSHANCPVCR 238
             E+         A +ECVICLS F++ E+GRRLPKC H FH EC+DMWL SH+NCP+CR
Sbjct: 121 GGEK---------AGLECVICLSGFDDGEVGRRLPKCGHEFHRECVDMWLGSHSNCPICR 180

Query: 239 EPVIGEAVDCS---DAVESGEGEIGRETVNEGQSVQFNSDSS--SSSSSSVDPPPLMSSI 298
            PV+ E +  +    A ++  G+    TV +  S   N +SS  S S SS   P   SS 
Sbjct: 181 APVVSEVISFAGDGTAADAVAGDGDSVTVLDVSSSGDNGESSVGSDSCSSSSSP---SSF 240

Query: 299 GASLIRILSRNRSDGRIFPSSN 300
           G SL R+LS+N S+ ++FP+S+
Sbjct: 241 GCSLKRMLSKNWSENKVFPASS 250

[Close]
BLAST of CSPI01G24090 vs. TrEMBL
Match: A0A0D2QKV6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G147000 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 4.9e-47
Identity = 117/247 (47.37%), Postives = 151/247 (61.13%), Query Frame = 1 

Query: 62  TNSTSLTQFAQTIFSYNSNIMLAALISLLLVVLFVLLLHAYANCFFPHPRHHRRTSVTVS 121
           T +  L+    TI SY  N++LAA+ISLLLV+LFVLLLH YA  F  H R   R+S T+S
Sbjct: 11  TPNPPLSNLVSTISSYEGNVLLAAIISLLLVILFVLLLHLYAKWFLAHARQRSRSSSTLS 70

Query: 122 YVLAPPRLSRFDSVPFDLG-SAPSNSKGLDPSVISAIPLFVYESEEKKCAAAAAAAA--M 181
           +V    R   F +  FD   SA S SKGLDPS+IS+IPLFV++ +E             +
Sbjct: 71  HVFPHDRFRHFHAFSFDNNASASSPSKGLDPSLISSIPLFVFKLDEHSDNNNKKHGLHNL 130

Query: 182 ECVICLSEFEERELGRRLPKCRHGFHLECIDMWLNSHANCPVCREPVIGEAVDCSDAVES 241
           +CV+CLS FE+ ++GR LPKC HGFHLECIDMWL+SH+NCP+CR PV+    D    V S
Sbjct: 131 DCVVCLSPFEDNDVGRNLPKCGHGFHLECIDMWLHSHSNCPICRAPVL-LTNDAESQVSS 190

Query: 242 GEGEIGRETVNEGQSVQFNSDSSSSSSSSVDPPPLMSSIGASLIRILSRNRSDGRIFPSS 301
                  ETV E      +   ++      D     SSIG SL R+LSRNRS+ ++FP+S
Sbjct: 191 A------ETVGESLDSGRHHQIAAPIDDDDDDLSASSSIGCSLKRMLSRNRSESKVFPTS 250

Query: 302 NGEELGV 306
           NG +L V
Sbjct: 251 NGGDLQV 250

[Close]
BLAST of CSPI01G24090 vs. TrEMBL
Match: A0A061GXF4_THECC (Toxicos en levadura 2, putative OS=Theobroma cacao GN=TCM_042177 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 3.2e-46
Identity = 126/275 (45.82%), Postives = 158/275 (57.45%), Query Frame = 1 

Query: 52  LNLPPPTMTPTNSTSLTQFAQTIFSYNSNIMLAALISLLLVVLFVLLLHAYANCFFPHPR 111
           ++L  P  T TN  S      +I SY+ N+MLAA+ISLLLV+LFVLLLH YA  F    R
Sbjct: 3   VSLDSPEQTTTNPFS--HLLNSISSYDGNVMLAAVISLLLVILFVLLLHVYAKWFLAQAR 62

Query: 112 HHRRTS-VTVSYVLAPPRLSRFDSVPFDLGSAPSNSKGLDPSVISAIPLFVYESEEKKCA 171
              R+S ++VS+V  P R  RF +  FD     S  KGLD SVIS+IPLFVY  EE K  
Sbjct: 63  QRSRSSSMSVSHVFRPDRFHRFHAFTFDTTFRSSPLKGLDSSVISSIPLFVYTMEEYK-- 122

Query: 172 AAAAAAAMECVICLSEFEERELGRRLPKCRHGFHLECIDMWLNSHANCPVCREPVIGEAV 231
                  +ECVICLS FE+ ++GR LPKC H FH+ECIDMWL SH+NCP+CR PV+    
Sbjct: 123 -----HNLECVICLSPFEDDDVGRNLPKCGHCFHVECIDMWLQSHSNCPICRAPVLSNDK 182

Query: 232 DCSDAVESGEG-------EIG-------------RETVNEGQSVQFNSDSSSSSSSSVDP 291
                V S E        E+G                 N   +   + D  S+SSSS+  
Sbjct: 183 VADSEVSSLESVGVLLNREVGVIDGNLRLDNLTELSDSNNRPTAAADDDILSASSSSL-- 242

Query: 292 PPLMSSIGASLIRILSRNRSDGRIFPSSNGEELGV 306
             L SS+G SL R+LSRNRS+ ++FPSSN  E+ V
Sbjct: 243 -TLSSSLGCSLKRMLSRNRSERKVFPSSNASEMEV 265

[Close]
BLAST of CSPI01G24090 vs. TAIR10
Match: AT5G58580.1 (AT5G58580.1 TOXICOS EN LEVADURA 63)

HSP 1 Score: 146.7 bits (369), Expect = 2.3e-35
Identity = 86/183 (46.99%), Postives = 111/183 (60.66%), Query Frame = 1 

Query: 65  TSLTQFAQTIFSYNSNIMLAALISLLLVVLFVLLLHAYANCFFPHPRH------------ 124
           +SL+ F + + SYNSN++LAAL+ LLLVVLFVLLLH YA  FF  P H            
Sbjct: 13  SSLSSFLKILSSYNSNVLLAALVFLLLVVLFVLLLHFYAR-FFWSPSHQDFSAAARHRRR 72

Query: 125 ---HRRTSVTVSYVLAPPRLSRFDS-VPFDLGSAPSNSKGLDPSVISAIPLFVYESEEKK 184
              +RR +VT + ++    L  FD  V     +A  + KGLD SVIS+IPLFVYE  E++
Sbjct: 73  RRRNRRRTVTTTRIIPSLPLGGFDDGVSSPAATATRDDKGLDSSVISSIPLFVYEENEEE 132

Query: 185 CAAAAAAAAMECVICLSEFEERELGRRLPKCRHGFHLECIDMWLNSHANCPVCREPVIGE 232
                     ECVICL  +E  + GR+L  C HGFH+ECIDMWL+SH+ CP+CR PV+  
Sbjct: 133 -----EDEEEECVICLGLWEAGDFGRKLRNCGHGFHVECIDMWLSSHSTCPLCRSPVLAA 189

[Close]
BLAST of CSPI01G24090 vs. TAIR10
Match: AT3G16720.1 (AT3G16720.1 TOXICOS EN LEVADURA 2)

HSP 1 Score: 107.1 bits (266), Expect = 2.0e-23
Identity = 73/203 (35.96%), Postives = 102/203 (50.25%), Query Frame = 1 

Query: 75  FSYNSNIMLAALISLLLVVLFVLLLHAYANCFF--PHPRHHRRTS----VTVSYVLAPPR 134
           ++ +  IML+A++ L  VV+ ++ LH YA  +      RH RR S     T+ +  A P 
Sbjct: 24  YAMSGKIMLSAIVILFFVVILMVFLHLYARWYLLRARRRHLRRRSRNRRATMVFFTADPS 83

Query: 135 LSRFDSVPFDLGSAPSNSKGLDPSVISAIPLFVYESEEKKCAAAAAAAAMECVICLSEFE 194
            +    V          S+GLDP+VI ++P+F +  E  K         +EC +CLSEFE
Sbjct: 84  TAATSVVA---------SRGLDPNVIKSLPVFTFSDETHK-------DPIECAVCLSEFE 143

Query: 195 ERELGRRLPKCRHGFHLECIDMWLNSHANCPVCREPVIGEAVDCSDAVESGEGEIGRETV 254
           E E GR LP C+H FH++CIDMW +SH+ CP+CR       V+    +ES      RE V
Sbjct: 144 ESETGRVLPNCQHTFHVDCIDMWFHSHSTCPLCR-----SLVESLAGIESTAAAREREVV 203

Query: 255 NEGQSVQFNSDSSSSSSSSVDPP 272
               S        SSSS   D P
Sbjct: 204 IAVDSDPVLVIEPSSSSGLTDEP 205

[Close]
BLAST of CSPI01G24090 vs. TAIR10
Match: AT2G47560.1 (AT2G47560.1 RING/U-box superfamily protein)

HSP 1 Score: 101.3 bits (251), Expect = 1.1e-21
Identity = 60/157 (38.22%), Postives = 82/157 (52.23%), Query Frame = 1 

Query: 75  FSYNSNIMLAALISLLLVVLFVLLLHAYANCFFPHPRHHRRTSVTVSYVLAPPRLSRFDS 134
           ++ N  IML+++I L + V+ +L  H+YA   F   RH+RR    +   L          
Sbjct: 22  YALNGKIMLSSVIVLFVAVIMILCFHSYARWLFR--RHNRRIRRRIRSHLRTL------- 81

Query: 135 VPFDLGSAPSNSKGLDPSVISAIPLFVYES------EEKKCAAAAAAAAMECVICLSEFE 194
                 SA    + LD +V+  IP+FVY S      EEK+          EC +CLSEFE
Sbjct: 82  ------SASPRDQALDQAVLDKIPIFVYSSKNPPPPEEKE----------ECSVCLSEFE 141

Query: 195 ERELGRRLPKCRHGFHLECIDMWLNSHANCPVCREPV 226
           E + GR LPKC H FH++CID W  S + CP+CR PV
Sbjct: 142 EEDEGRLLPKCGHSFHVDCIDTWFRSRSTCPLCRAPV 153

[Close]
BLAST of CSPI01G24090 vs. TAIR10
Match: AT3G62690.1 (AT3G62690.1 AtL5)

HSP 1 Score: 99.0 bits (245), Expect = 5.4e-21
Identity = 72/199 (36.18%), Postives = 104/199 (52.26%), Query Frame = 1 

Query: 75  FSYNSNIMLAALISLLLVVLFVLLLHAYANCFFPHPRHHRRTSVTVSYVLAPPRLSRFDS 134
           +S N  IMLA++I L + V+ +L  H+YA   F   R +RR    +S  L     +R   
Sbjct: 22  YSLNGKIMLASVIILFVAVILILCFHSYARWLFR--RQNRRIRRRISAHLRSLAAAR--- 81

Query: 135 VPFDLGSAPSNSKGLDPSVISAIPLFVYESEEKKCAAAAAAAAMECVICLSEFEERELGR 194
              D   + S+   LDP+V+  IP+FVY  +  +      +   EC +CLSEFEE + GR
Sbjct: 82  ---DPTQSSSSLSPLDPTVLEKIPIFVYSVKTHE------SPLEECSVCLSEFEEDDEGR 141

Query: 195 RLPKCRHGFHLECIDMWLNSHANCPVCREPV-IGEAVDCSDAVESGEGEIG--RETVNEG 254
            LPKC H FH++CID W  S ++CP+CR PV   + V   + V +    +    +T    
Sbjct: 142 VLPKCGHVFHVDCIDTWFRSRSSCPLCRAPVQPAQPVTEPEPVAAVFPSVKPIEDTEAGS 201

Query: 255 QSVQFNSDSSSSSSSSVDP 271
            S    S+SS+ SSSS  P
Sbjct: 202 SSSSDESESSTPSSSSGSP 206

[Close]
BLAST of CSPI01G24090 vs. TAIR10
Match: AT3G18930.1 (AT3G18930.1 RING/U-box superfamily protein)

HSP 1 Score: 95.5 bits (236), Expect = 6.0e-20
Identity = 49/106 (46.23%), Postives = 60/106 (56.60%), Query Frame = 1 

Query: 129 LSRFDSVPFDLGSAPSNSK-GLDPSVISAIPLFVYESE----EKKCAAAAAAAAMECVIC 188
           L  F   PFD     S S  GLD SVI  +PLF+Y +     +      +AA   +C +C
Sbjct: 100 LRSFSPFPFDSFHYSSYSPYGLDDSVIKTLPLFLYSAAACTGKPAVGKTSAANCRDCAVC 159

Query: 189 LSEFEERELGRRLPKCRHGFHLECIDMWLNSHANCPVCREPVIGEA 230
           L EFEE +  R LP C H FHLECID WL SH NCP+CR  ++G A
Sbjct: 160 LLEFEEGDYVRTLPLCFHAFHLECIDEWLRSHPNCPLCRTAILGSA 205

[Close]
BLAST of CSPI01G24090 vs. NCBI nr
Match: gi|700210733|gb|KGN65829.1| (hypothetical protein Csa_1G532370 [Cucumis sativus])

HSP 1 Score: 590.5 bits (1521), Expect = 1.7e-165
Identity = 302/305 (99.02%), Postives = 303/305 (99.34%), Query Frame = 1 

Query: 1   MLRYQKTESPFGFTEKKIRCILIINKLNTLSTLLLPPSSGHCLPRLLLCNFLNLPPPTMT 60
           MLRYQKTESPFGFTEKKIRCILIINKLNTLSTLLLPPSSGHCLPRLLLCNFLNLPPPTMT
Sbjct: 1   MLRYQKTESPFGFTEKKIRCILIINKLNTLSTLLLPPSSGHCLPRLLLCNFLNLPPPTMT 60

Query: 61  PTNSTSLTQFAQTIFSYNSNIMLAALISLLLVVLFVLLLHAYANCFFPHPRHHRRTSVTV 120
           PTNSTSLTQFAQTIFSYNSNIMLAALISLLLVVLFVLLLHAYANCFFPHPRHHRRTSVTV
Sbjct: 61  PTNSTSLTQFAQTIFSYNSNIMLAALISLLLVVLFVLLLHAYANCFFPHPRHHRRTSVTV 120

Query: 121 SYVLAPPRLSRFDSVPFDLGSAPSNSKGLDPSVISAIPLFVYESEEKKCAAAAAAAAMEC 180
           SYVLAPPRLSRFDSVPFDLGSAPSNSKGLDPSVISAIPLFVYESEEKKC  AAAAAAMEC
Sbjct: 121 SYVLAPPRLSRFDSVPFDLGSAPSNSKGLDPSVISAIPLFVYESEEKKC--AAAAAAMEC 180

Query: 181 VICLSEFEERELGRRLPKCRHGFHLECIDMWLNSHANCPVCREPVIGEAVDCSDAVESGE 240
           VICLSEFEERELGRRLPKCRHGFHLECIDMWLNSHANCPVCREPVIGEAVDCSDAVESGE
Sbjct: 181 VICLSEFEERELGRRLPKCRHGFHLECIDMWLNSHANCPVCREPVIGEAVDCSDAVESGE 240

Query: 241 GEIGRETVNEGQSVQFNSDSSSSSSSSVDPPPLMSSIGASLIRILSRNRSDGRIFPSSNG 300
           GEIGRETVNEGQSVQFNSDSSSSS+SSVDPPPLMSSIGASLIRILSRNRSDGRIFPSSNG
Sbjct: 241 GEIGRETVNEGQSVQFNSDSSSSSTSSVDPPPLMSSIGASLIRILSRNRSDGRIFPSSNG 300

Query: 301 EELGV 306
           EELGV
Sbjct: 301 EELGV 303

[Close]
BLAST of CSPI01G24090 vs. NCBI nr
Match: gi|449455140|ref|XP_004145311.1| (PREDICTED: RING-H2 finger protein ATL63 [Cucumis sativus])

HSP 1 Score: 473.0 bits (1216), Expect = 3.9e-130
Identity = 244/247 (98.79%), Postives = 245/247 (99.19%), Query Frame = 1 

Query: 59  MTPTNSTSLTQFAQTIFSYNSNIMLAALISLLLVVLFVLLLHAYANCFFPHPRHHRRTSV 118
           MTPTNSTSLTQFAQTIFSYNSNIMLAALISLLLVVLFVLLLHAYANCFFPHPRHHRRTSV
Sbjct: 1   MTPTNSTSLTQFAQTIFSYNSNIMLAALISLLLVVLFVLLLHAYANCFFPHPRHHRRTSV 60

Query: 119 TVSYVLAPPRLSRFDSVPFDLGSAPSNSKGLDPSVISAIPLFVYESEEKKCAAAAAAAAM 178
           TVSYVLAPPRLSRFDSVPFDLGSAPSNSKGLDPSVISAIPLFVYESEEKKC  AAAAAAM
Sbjct: 61  TVSYVLAPPRLSRFDSVPFDLGSAPSNSKGLDPSVISAIPLFVYESEEKKC--AAAAAAM 120

Query: 179 ECVICLSEFEERELGRRLPKCRHGFHLECIDMWLNSHANCPVCREPVIGEAVDCSDAVES 238
           ECVICLSEFEERELGRRLPKCRHGFHLECIDMWLNSHANCPVCREPVIGEAVDCSDAVES
Sbjct: 121 ECVICLSEFEERELGRRLPKCRHGFHLECIDMWLNSHANCPVCREPVIGEAVDCSDAVES 180

Query: 239 GEGEIGRETVNEGQSVQFNSDSSSSSSSSVDPPPLMSSIGASLIRILSRNRSDGRIFPSS 298
           GEGEIGRETVNEGQSVQFNSDSSSSS+SSVDPPPLMSSIGASLIRILSRNRSDGRIFPSS
Sbjct: 181 GEGEIGRETVNEGQSVQFNSDSSSSSTSSVDPPPLMSSIGASLIRILSRNRSDGRIFPSS 240

Query: 299 NGEELGV 306
           NGEELGV
Sbjct: 241 NGEELGV 245

[Close]
BLAST of CSPI01G24090 vs. NCBI nr
Match: gi|659115017|ref|XP_008457345.1| (PREDICTED: RING-H2 finger protein ATL63 isoform X2 [Cucumis melo])

HSP 1 Score: 430.3 bits (1105), Expect = 2.9e-117
Identity = 229/248 (92.34%), Postives = 232/248 (93.55%), Query Frame = 1 

Query: 59  MTPTNSTSLTQFAQTIFSYNSNIMLAALISLLLVVLFVLLLHAYANCFFPHPRHHRRTSV 118
           MT +NSTSLTQFAQ+IFSYNSNIMLAALISLLLVVLFVLLLHAYANCFFPHPRH RRTSV
Sbjct: 1   MTSSNSTSLTQFAQSIFSYNSNIMLAALISLLLVVLFVLLLHAYANCFFPHPRHRRRTSV 60

Query: 119 TVSYVLAPPRLSRFDSV-PFDLGSAPSNSKGLDPSVISAIPLFVYESEEKKCAAAAAAAA 178
           TVSYVLAPPRLSRFDSV PFDLGSAPS  KGLDPSVISAIPLFVYESEEKKCAA      
Sbjct: 61  TVSYVLAPPRLSRFDSVVPFDLGSAPS--KGLDPSVISAIPLFVYESEEKKCAAT----- 120

Query: 179 MECVICLSEFEERELGRRLPKCRHGFHLECIDMWLNSHANCPVCREPVIGEAVDCSDAVE 238
           MECVICLSEFEERELGRRLPKCRHGFHLECIDMWLNSHANCPVCREPVIGEAVDCSDA E
Sbjct: 121 MECVICLSEFEERELGRRLPKCRHGFHLECIDMWLNSHANCPVCREPVIGEAVDCSDAAE 180

Query: 239 SGEGEIGRETVNEGQSVQFNSDSSSSSSSSVDPPPLMSSIGASLIRILSRNRSDGRIFPS 298
           SGEGEIGRETVNEGQS QFNSD  SSSSSS+DPPPLMSSIGASLIRILSRNRSDGRIFPS
Sbjct: 181 SGEGEIGRETVNEGQSGQFNSD--SSSSSSIDPPPLMSSIGASLIRILSRNRSDGRIFPS 239

Query: 299 SNGEELGV 306
           SNGEEL V
Sbjct: 241 SNGEELDV 239

[Close]
BLAST of CSPI01G24090 vs. NCBI nr
Match: gi|659115015|ref|XP_008457344.1| (PREDICTED: RING-H2 finger protein ATL63 isoform X1 [Cucumis melo])

HSP 1 Score: 430.3 bits (1105), Expect = 2.9e-117
Identity = 231/256 (90.23%), Postives = 234/256 (91.41%), Query Frame = 1 

Query: 59  MTPTNSTSLTQFAQTIFSYNSNIMLAALISLLLVVLFVLLLHAYANCFFPHPRHHRRTSV 118
           MT +NSTSLTQFAQ+IFSYNSNIMLAALISLLLVVLFVLLLHAYANCFFPHPRH RRTSV
Sbjct: 1   MTSSNSTSLTQFAQSIFSYNSNIMLAALISLLLVVLFVLLLHAYANCFFPHPRHRRRTSV 60

Query: 119 TVSYVLAPPRLSRFDSV-PFDLGSAPSNSKGLDPSVISAIPLFVYESEEKKCAAAAAAAA 178
           TVSYVLAPPRLSRFDSV PFDLGSAPS  KGLDPSVISAIPLFVYESEEKKCAA      
Sbjct: 61  TVSYVLAPPRLSRFDSVVPFDLGSAPS--KGLDPSVISAIPLFVYESEEKKCAAT----- 120

Query: 179 MECVICLSEFEERELGRRLPKCRHGFHLECIDMWLNSHANCPVCREPVIGEAVDCSDAVE 238
           MECVICLSEFEERELGRRLPKCRHGFHLECIDMWLNSHANCPVCREPVIGEAVDCSDA E
Sbjct: 121 MECVICLSEFEERELGRRLPKCRHGFHLECIDMWLNSHANCPVCREPVIGEAVDCSDAAE 180

Query: 239 SGEGEIGRETVNEGQSVQFNSD--------SSSSSSSSVDPPPLMSSIGASLIRILSRNR 298
           SGEGEIGRETVNEGQS QFNSD        SSSSSSSS+DPPPLMSSIGASLIRILSRNR
Sbjct: 181 SGEGEIGRETVNEGQSGQFNSDSSSSSSSSSSSSSSSSIDPPPLMSSIGASLIRILSRNR 240

Query: 299 SDGRIFPSSNGEELGV 306
           SDGRIFPSSNGEEL V
Sbjct: 241 SDGRIFPSSNGEELDV 249

[Close]
BLAST of CSPI01G24090 vs. NCBI nr
Match: gi|1009116097|ref|XP_015874591.1| (PREDICTED: RING-H2 finger protein ATL63 [Ziziphus jujuba])

HSP 1 Score: 219.2 bits (557), Expect = 1.0e-53
Identity = 138/289 (47.75%), Postives = 172/289 (59.52%), Query Frame = 1 

Query: 57  PTMTPTNSTS-LTQFAQTIFSYNSNIMLAALISLLLVVLFVLLLHAYANCFFPHPRHHRR 116
           PT +PT++T+ L +F  +IFSY+ N+MLAAL+SLLLVVLFVLLLH YA  F  H  HHRR
Sbjct: 4   PTHSPTHTTNPLNRFVDSIFSYDGNVMLAALVSLLLVVLFVLLLHVYAKWFLAHAHHHRR 63

Query: 117 --TSVTVSYVLAPPRLSRFDSVPFDLGSAPSNS-KGLDPSVISAIPLFVYESEEKKCAAA 176
             +S+TVS VL P R   F +  FDL S    S KGLDPSVISAIPLFVY+SEE      
Sbjct: 64  RSSSITVSRVLGPTRFHNFPTFTFDLASLSGTSTKGLDPSVISAIPLFVYKSEEHN---- 123

Query: 177 AAAAAMECVICLSEFEERELGRRLPKCRHGFHLECIDMWLNSHANCPVCREP--VIGEAV 236
                +ECVICLS+FE+ ++GR LPKC H FH+ECIDMWL SH+NCP+CR P  V+  + 
Sbjct: 124 ---HGLECVICLSDFEDDDIGRNLPKCHHAFHVECIDMWLGSHSNCPICRAPAAVMTTSD 183

Query: 237 DCSDAVESGE-----------------GEIGRETVNEG-----------------QSVQF 296
             S A+  G+                 G  G   +N G                 Q+V  
Sbjct: 184 GKSSAIVGGQEGNDGIISSETTVATVDGSAGLRLINGGSAALMETVIEISNSGDVQNVVM 243

Query: 297 NSD--SSSSSSSSVDPPPLMSSIGASLIRILSRNRSDGRIFPSSNGEEL 304
            SD  SS SSSSS       SS G SL RILSRN+S+ ++ P++N  E+
Sbjct: 244 GSDCVSSPSSSSSSSSSLSSSSFGCSLKRILSRNKSENKVVPATNVSEI 285

The following BLAST results are available for this feature:
BLAST of CSPI01G24090 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATL63_ARATH4.0e-3446.99RING-H2 finger protein ATL63 OS=Arabidopsis thaliana GN=ATL63 PE=2 SV=1[more]
ATL2_ARATH3.5e-2235.96RING-H2 finger protein ATL2 OS=Arabidopsis thaliana GN=ATL2 PE=2 SV=2[more]
ATL64_ARATH1.9e-2038.22RING-H2 finger protein ATL64 OS=Arabidopsis thaliana GN=ATL64 PE=2 SV=1[more]
ATL5_ARATH9.6e-2036.18RING-H2 finger protein ATL5 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=1[more]
ATL65_ARATH1.1e-1846.23RING-H2 finger protein ATL65 OS=Arabidopsis thaliana GN=ATL65 PE=2 SV=2[more]
BLAST of CSPI01G24090 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LXP0_CUCSA1.2e-16599.02Uncharacterized protein OS=Cucumis sativus GN=Csa_1G532370 PE=4 SV=1[more]
D7SJU6_VITVI2.0e-4846.30Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g06930 PE=4 SV=... [more]
W9QQP8_9ROSA2.2e-4747.71RING-H2 finger protein ATL2 OS=Morus notabilis GN=L484_011677 PE=4 SV=1[more]
A0A0D2QKV6_GOSRA4.9e-4747.37Uncharacterized protein OS=Gossypium raimondii GN=B456_003G147000 PE=4 SV=1[more]
A0A061GXF4_THECC3.2e-4645.82Toxicos en levadura 2, putative OS=Theobroma cacao GN=TCM_042177 PE=4 SV=1[more]
BLAST of CSPI01G24090 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G58580.12.3e-3546.99 TOXICOS EN LEVADURA 63[more]
AT3G16720.12.0e-2335.96 TOXICOS EN LEVADURA 2[more]
AT2G47560.11.1e-2138.22 RING/U-box superfamily protein[more]
AT3G62690.15.4e-2136.18 AtL5[more]
AT3G18930.16.0e-2046.23 RING/U-box superfamily protein[more]
BLAST of CSPI01G24090 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210733|gb|KGN65829.1|1.7e-16599.02hypothetical protein Csa_1G532370 [Cucumis sativus][more]
gi|449455140|ref|XP_004145311.1|3.9e-13098.79PREDICTED: RING-H2 finger protein ATL63 [Cucumis sativus][more]
gi|659115017|ref|XP_008457345.1|2.9e-11792.34PREDICTED: RING-H2 finger protein ATL63 isoform X2 [Cucumis melo][more]
gi|659115015|ref|XP_008457344.1|2.9e-11790.23PREDICTED: RING-H2 finger protein ATL63 isoform X1 [Cucumis melo][more]
gi|1009116097|ref|XP_015874591.1|1.0e-5347.75PREDICTED: RING-H2 finger protein ATL63 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009987 cellular process
biological_process GO:0050789 regulation of biological process
cellular_component GO:0005575 cellular_component
cellular_component GO:0044464 cell part
cellular_component GO:0044444 cytoplasmic part
cellular_component GO:0012505 endomembrane system
cellular_component GO:0043231 intracellular membrane-bounded organelle
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G24090.1CSPI01G24090.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 179..222
score: 5.3
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 180..221
score: 8.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 180..222
score: 1
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 178..225
score: 2.8
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 62..247
score: 2.4
NoneNo IPR availablePANTHERPTHR14155:SF135RING-H2 FINGER PROTEIN ATL63coord: 62..247
score: 2.4
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 179..226
score: 7.78

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G24090Cla008146Watermelon (97103) v1cpiwmB023
CSPI01G24090Csa1G532370Cucumber (Chinese Long) v2cpicuB001
CSPI01G24090MELO3C020529Melon (DHL92) v3.5.1cpimeB025
CSPI01G24090ClCG03G000540Watermelon (Charleston Gray)cpiwcgB050
CSPI01G24090Lsi02G012600Bottle gourd (USVL1VR-Ls)cpilsiB031
CSPI01G24090MELO3C020529.2Melon (DHL92) v3.6.1cpimedB024
CSPI01G24090CsaV3_1G036400Cucumber (Chinese Long) v3cpicucB000
CSPI01G24090Cla97C03G051320Watermelon (97103) v2cpiwmbB044
CSPI01G24090Bhi08G000400Wax gourdcpiwgoB048
CSPI01G24090Cucsa.151710Cucumber (Gy14) v1cgycpiB224
CSPI01G24090CmaCh01G006860Cucurbita maxima (Rimu)cmacpiB430
CSPI01G24090CmaCh13G000500Cucurbita maxima (Rimu)cmacpiB220
CSPI01G24090CmoCh13G000410Cucurbita moschata (Rifu)cmocpiB206
CSPI01G24090CmoCh01G007140Cucurbita moschata (Rifu)cmocpiB420
CSPI01G24090Cp4.1LG02g11910Cucurbita pepo (Zucchini)cpecpiB531
CSPI01G24090Cp4.1LG20g07950Cucurbita pepo (Zucchini)cpecpiB507
CSPI01G24090CsGy1G023570Cucumber (Gy14) v2cgybcpiB002
CSPI01G24090Carg26032Silver-seed gourdcarcpiB0648
CSPI01G24090Carg07055Silver-seed gourdcarcpiB0557
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G24090Silver-seed gourdcarcpiB0691
CSPI01G24090Cucurbita maxima (Rimu)cmacpiB697
CSPI01G24090Cucurbita maxima (Rimu)cmacpiB699
CSPI01G24090Cucurbita moschata (Rifu)cmocpiB691
CSPI01G24090Cucurbita moschata (Rifu)cmocpiB692
CSPI01G24090Cucurbita pepo (Zucchini)cpecpiB382