Cp4.1LG20g01770 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG20g01770
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Nascent polypeptide-associated complex subunit beta
Location	Cp4.1LG20 : 988174 .. 992414 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGAGGCTAAATCACAACCGTTGGATCAGCCTTTTAAATAACATCGTCTTCGTCGCGCCCTAGTATATTAAGCATTAGCGCCGTCCCAGAGTGAAGCTATCTTCCTCTGCTTCAACGAAGCTCTCGACTTAAAAATCTCAAATAATCTTCAAGGTAACTCTTCCTTCCAATTTAGCTTCATTTCTCTTCGCTTTCTCGATTCTCCGTGGTTCTTACTATTTTCGTATAGTTCGGCTTTCTCTTTCACGATGATTTTCTTTTGCCGAGGGCTCTACTGTGGCGTAGTTTCATGTTCTAGCTTTGGAGCCGGATTTTGTTTTTACTTCTCTTGAGGTGTTCATCGATTTGATATGTATTTATCTTGAAACTGATCGTCATTGTTTTCTCTCTTTTTTTTTTTGTATGTTAAACATGCTATGTTTTCGGATTTCTTGATAGCTTCACAGATCGTGATTAAATCTCTACTATCTGTAATTGCGTTCTTTGATTGTAAGCTCAGAAGTTGACGAAAGAACAGCCTAGGTTAGACGATTAGTGGAGTCGTAGTTACTGTACTGAGCAGGAGCTTACTTTCACGAATATTTTACTTTTTTCTGAAAACTTTGGCGGCTTCTCTTAGAGAATCTCACTCTTATATTCTCTTCGACGATCATGATAAGATGATGAATGGATATTTGTTGTTGTTGAAATAACTTTTTGAGGATATTTGTTGCTGTTGAAATAACTTTTTGGATAAGCTAAGCCTCGATAATGTTTTTTAGTGTTGCCTTTCTTTCAGAGATTGTAATTGTTAAATGATGTTTCGGATATGGTTTTCCATTTGAAAAATGTGGACAAGATCCGTGTATGCGTTTATCTGCTTTACCTCTCTTTTCTTCGTGGACGCATCTATTCTTCTTAATTGCTCTAATAATACAAGTCCGAATCCTTAATCACTTACCAAGACTTCATTTCTCACAACATTTATCCTTCTCGTTTCCTATTAAAAACGAAAAACTCATAAATCTTATCCTTCTCGTTTCATATTAAAAACAAAAAAACTCATAAATCTCATCTTTGTTCTTATGTTGTGCAGATGGATCATGCGAAGCTCCAGAAGATGGCTGGTGCAGTGCGCACTGGTGGAAAAGGTAGCGTGAGAAGGTTGGTTGCCTTTTTATCTATTGAAAGTTCAAAGTGCGTAAGAAGAGTCAGTTGTTTATTGCTTGATTTATTTAATAAGAAATCATAAATTAATTCAACCGGAAAATGGAACTCTTACAAATCTTACCTAGTTGTTCTTGATTATAGTTTATTTGTTGATAGATAATTTAATTGAACCATAATATCATCCAAATAAGGTGGTTTGGTCTGAGAGGTTAAGTTAACGCAATATCTAGTACTCTGTTCCCACGTCCACTTCTGCTTTCTTCAGTTATCTTATCCATCGTGCTATTAATTTTGATTGGCTTCTTTCTTATAATCAGAGGCGTTTTCTCTAGCTAGCAGTTAATTTTTAATTTCTGATTTGCAGTTCATGGTTTACGATTGACGAAACACACACACACACACACACACACACACATTATTATAAAATTCAGCTGACTAATGGATGAATAAACAAACATAAATTCCATGCTTGTTTGAGTATTGCATCTTTTAGTTACGCAAGTTGTCATCTCTCGACATTTTCTCATGCTTCTTTAACAAAATGACGTTGATAATTTTCTTTATGTATTTTGTCAATTAAAGGAAGAAGAAAGCTGTTCACAAGACAACTACCACAGATGATAAACGGCTTCAAAGTACCTTGAAGAGAATAGGAGTTAATGCTATTCCTGCAATTGAGGAAGTTAACATCTTCAAGGATGATGTAGTTATTCAGTTTGTTAATCCGAAAGGTAAAGCCACTTAACTATCCTTGACTTCTTACCATCGATATCTTGATATGTAACTCATATTTTGCTGTTTCTCGTTCTCTATTTCAGTTCAGGCTTCTATTGCCGCAAACACATGGGTTGTTAGTGGTTCTCCTCAAACGAAAAGTACGTCTCTTACCACCTTTTGAATATAATGAAACATACAACTGACCTTGTGTTCTAAATTGTAGTTATCTAAAACTGAAATAATTTTTTCCATTCAAATTTGGTCGTATAATTTTTAAAACAAAAGAATAGTCCTAAAAATGAAAACGACATAGTAGAGTTGTCTGCAGAATATGCTGTTTTTAAGGTAACTTTTAGTTTCCAATTGCGGGATCAATAGTGGTTTTTATTTCAATTACTACGTTGTGTTCAAACCGTTTTTAAATCAGTGATGAATATTTTTTTTATTGAAGTATTTTTAAGGTGCCGTTTGGAAATGCTATAAAAAACCGCTCAATTTTTTATTACAAAATTTTATTCTTTAATGAGGAATACCAATCTGTCCAGTGAAATATTTAAAATTGTTTTAAAAATGAGTTATTCCTACTTCTTGGAGTACCTGTTAATTGTGTACGAACCTTCAAGTATTTTTAGGAATTAAATATGATGTGGATCACAAAAAAAGTGGCTATAAGTGAACACTGCAACTTACGTCCAACCGTTTGAAAGTAGTTTTTTCCGGCATAGTTTCATCTAACAGTTTGAAGAAGCTGTTCTATTTGTGCCAAGTAGGCTTTACAAATTTTCAGATAGCTCTCCGTAGAAAAATTCAAACTACTCCCCGTTTTTTTTTTAACGTGCTGTTGACCTGTTATAATGTGGCAAAATTTTACTAAGGGTTCTCAGGGATTAGGATTACGTTTTCAAAGATTTAATGCAAAACAACATGCTGCCCTTGGCTTGTAATTTGAAATACGTCCAAATTCGAATGCTTCGTGTCATTGTGTCCAGCATACGAATATCTCTGAGACTAGATCGACTTTTTTAGTGCTAAAAAGTGTTTTTAAACGCTTAAAAGAGTCCAATCCAAACAAGTTGGAGTTTCAAAATATGTTGTTAAATAAAGATTTTGGCTAAAAGCTATCGTTTTAAATCGGGGGCAAATAGTTTAGTTTGATACTGAAAAGTCTGGGATGATAGTTCACCTTTGCTAAATTATGCCATTATTTTTTATATTTATACTTGGATTGGAATATTGACAATTGTAACTTCTGATCTGATGACTCGTATTTTAAAATTATGCCATTACTTTTTATATTTACTTCAATGAGACCTTGTTTATTTCTGGAATAGATGTGTTCTTACCGCAAGCAAGTCTTGGGATAAAAAATTCTGTAGCGTCTTGCTTATGCAAGATGTTACTCGAGGTCCCTCGCTTACACTGGCACCTTTTGTTTATTTCTGATTGTGAAGCCTTTCTATTAACACTGCCCAGGATGCTTGTTGTGATCTTTAGCCATCTCTTGTTAATATCTATCACGGTTTAAACACATCATGTATTACTAATGATGCCTGTCTAATATTTTGATTTCTTCTCAGAATTGCAGGATATTCTCCCTGGAATTATTAACCAATTGGGTAAGTACTACGCTTGGATTTTGGTGTTTGCTGCGGAGTTGCAATTTTAACTACGGCGCTAAGAATACGACTTGTTTGCATGTAAATATTTCCAGGGCCCGATAATTTGGACAATCTGAGGAAGTTGGCTGAGCAGTTCCAGAAGCAAGCACCTGGAGAAGCCGCAGCAGCAGCAGCAGCAGCAGCAGCCAATGCAGAGGATGATGACGACGACGACGTACCCGACCTTGTCGAAGGACAAACCTTCGAAGCTGCTGCAGAAGAGAGTAAAGCCTCCTAGATAGGAGCTCTCTCTCAGATGATTTTATTTAGCCTTTTTCTTTTTACATATTTTTAATGTTGGGAAGAGTTCATTTTTCTCCTTGTATTTCTTTTTGTTAATCTTTGTTGCCCATGGCATTTTTCTACTCACCCCTGCCCCCACGTAACCCCCAGATGCATGAATTTTCGGTTGCTGCCCCCTTTCAACCACCTTAATTCATGTGGAGAATGCTTTTCTTATTTAGGTACGGAATTAATGGCTACCACCCCGCCTCCTTACCTAAAGAAAAAAATTTGGGGATTTAAACTTTAGCCAACTTTGTATTCGAATATGTTAAGGTGTATGCTTATTAAATAGTCCTTTACCCTCTTTTTTCTCTTCTTGTACTGTTGACTTGTTAAGTTTTAGGAATACTAGCTGTATTATTTAGATTTTGATGAATTCCAATGGCCAAGAAATTAAAAAGTGTATTGAAACATGAATGTCATTGCGTGGTG

mRNA sequence

GTGAGGCTAAATCACAACCGTTGGATCAGCCTTTTAAATAACATCGTCTTCGTCGCGCCCTAGTATATTAAGCATTAGCGCCGTCCCAGAGTGAAGCTATCTTCCTCTGCTTCAACGAAGCTCTCGACTTAAAAATCTCAAATAATCTTCAAGATGGATCATGCGAAGCTCCAGAAGATGGCTGGTGCAGTGCGCACTGGTGGAAAAGGTAGCGTGAGAAGGAAGAAGAAAGCTGTTCACAAGACAACTACCACAGATGATAAACGGCTTCAAAGTACCTTGAAGAGAATAGGAGTTAATGCTATTCCTGCAATTGAGGAAGTTAACATCTTCAAGGATGATGTAGTTATTCAGTTTGTTAATCCGAAAGTTCAGGCTTCTATTGCCGCAAACACATGGGTTGTTAGTGGTTCTCCTCAAACGAAAAAATTGCAGGATATTCTCCCTGGAATTATTAACCAATTGGGGCCCGATAATTTGGACAATCTGAGGAAGTTGGCTGAGCAGTTCCAGAAGCAAGCACCTGGAGAAGCCGCAGCAGCAGCAGCAGCAGCAGCAGCCAATGCAGAGGATGATGACGACGACGACGTACCCGACCTTGTCGAAGGACAAACCTTCGAAGCTGCTGCAGAAGAGAGTAAAGCCTCCTAGATAGGAGCTCTCTCTCAGATGATTTTATTTAGCCTTTTTCTTTTTACATATTTTTAATGTTGGGAAGAGTTCATTTTTCTCCTTGTATTTCTTTTTGTTAATCTTTGTTGCCCATGGCATTTTTCTACTCACCCCTGCCCCCACGTAACCCCCAGATGCATGAATTTTCGGTTGCTGCCCCCTTTCAACCACCTTAATTCATGTGGAGAATGCTTTTCTTATTTAGGTACGGAATTAATGGCTACCACCCCGCCTCCTTACCTAAAGAAAAAAATTTGGGGATTTAAACTTTAGCCAACTTTGTATTCGAATATGTTAAGGTGTATGCTTATTAAATAGTCCTTTACCCTCTTTTTTCTCTTCTTGTACTGTTGACTTGTTAAGTTTTAGGAATACTAGCTGTATTATTTAGATTTTGATGAATTCCAATGGCCAAGAAATTAAAAAGTGTATTGAAACATGAATGTCATTGCGTGGTG

Coding sequence (CDS)

ATGGATCATGCGAAGCTCCAGAAGATGGCTGGTGCAGTGCGCACTGGTGGAAAAGGTAGCGTGAGAAGGAAGAAGAAAGCTGTTCACAAGACAACTACCACAGATGATAAACGGCTTCAAAGTACCTTGAAGAGAATAGGAGTTAATGCTATTCCTGCAATTGAGGAAGTTAACATCTTCAAGGATGATGTAGTTATTCAGTTTGTTAATCCGAAAGTTCAGGCTTCTATTGCCGCAAACACATGGGTTGTTAGTGGTTCTCCTCAAACGAAAAAATTGCAGGATATTCTCCCTGGAATTATTAACCAATTGGGGCCCGATAATTTGGACAATCTGAGGAAGTTGGCTGAGCAGTTCCAGAAGCAAGCACCTGGAGAAGCCGCAGCAGCAGCAGCAGCAGCAGCAGCCAATGCAGAGGATGATGACGACGACGACGTACCCGACCTTGTCGAAGGACAAACCTTCGAAGCTGCTGCAGAAGAGAGTAAAGCCTCCTAG

Protein sequence

MDHAKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPGEAAAAAAAAAANAEDDDDDDVPDLVEGQTFEAAAEESKAS

Homology

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BLAST of Cp4.1LG20g01770 vs. Swiss-Prot
Match: BTF3L_ARATH (Nascent polypeptide-associated complex subunit beta OS=Arabidopsis thaliana GN=At1g73230 PE=2 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 6.5e-63
Identity = 130/161 (80.75%), Postives = 140/161 (86.96%), Query Frame = 1


Query: 1   MDHAKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+  KL KMA  VRTGGKG+VRRKKKAVHKTTTTDDKRLQSTLKR+GVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRVGVNSIPAIEEVNIF 60

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQF+NPKVQASIAANTWVVSG+PQTKKLQDILP II+QLGPDNLDNL+KLAEQFQ
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGTPQTKKLQDILPQIISQLGPDNLDNLKKLAEQFQ 120

Query: 121 KQAPGEAAAAAAAAAANAEDDDDDDVPDLVEGQTFEAAAEE 162
           KQAPG    A    A   E+DDDDDVPDLV G+TFE  A E
Sbjct: 121 KQAPG----AGDVPATIQEEDDDDDVPDLVVGETFETPATE 157

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BLAST of Cp4.1LG20g01770 vs. Swiss-Prot
Match: BTF3_ARATH (Basic transcription factor 3 OS=Arabidopsis thaliana GN=BTF3 PE=1 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 3.2e-62
Identity = 130/161 (80.75%), Postives = 143/161 (88.82%), Query Frame = 1


Query: 1   MDHAKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+  KL KMA  VRTGGKG+VRRKKKAVHKT TTDDKRLQSTLKRIGVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTNTTDDKRLQSTLKRIGVNSIPAIEEVNIF 60

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQF+NPKVQASIAANTWVVSGSPQTKKLQDILP II+QLGPDN+DNL+KLAEQFQ
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPQIISQLGPDNMDNLKKLAEQFQ 120

Query: 121 KQAPGEAAAAAAAAAANAEDDDDDDVPDLVEGQTFEAAAEE 162
           KQA GE      AA+A  +++DDDDVP+LV G+TFE AAEE
Sbjct: 121 KQASGE----GNAASATIQEEDDDDVPELV-GETFETAAEE 156

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BLAST of Cp4.1LG20g01770 vs. Swiss-Prot
Match: BT3L4_DANRE (Transcription factor BTF3 homolog 4 OS=Danio rerio GN=btf3l4 PE=2 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.0e-35
Identity = 85/152 (55.92%), Postives = 110/152 (72.37%), Query Frame = 1


Query: 1   MDHAKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+  KL K+   VR GGKG+ RRKKK VH+T T DDK+LQS+LK++ VN I  IEEVN+ 
Sbjct: 1   MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLVVNNIAGIEEVNMI 60

Query: 61  KDD-VVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF 120
           KDD  VI F NPKVQAS++ANT+ ++G  +TK+L ++LPGI++QLG D+L +LRKLAEQF
Sbjct: 61  KDDGTVIHFNNPKVQASLSANTFAITGHAETKQLTEMLPGILSQLGADSLTSLRKLAEQF 120

Query: 121 QKQAPGEAAAAAAAAAANAEDDDDDDVPDLVE 152
            +Q     A  A        D++DDDVPDLVE
Sbjct: 121 PRQVLDNKAPKAEDI-----DEEDDDVPDLVE 147

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BLAST of Cp4.1LG20g01770 vs. Swiss-Prot
Match: NACB_AJECN (Nascent polypeptide-associated complex subunit beta OS=Ajellomyces capsulatus (strain NAm1 / WU24) GN=EGD1 PE=3 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 3.4e-35
Identity = 84/162 (51.85%), Postives = 116/162 (71.60%), Query Frame = 1


Query: 1   MDHAKLQKMAGAVRTG-GKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNI 60
           MD AKL ++  +VR G GKG+ RRK K VHK++ TDDK+LQ++LK++ V  I AIEEVN+
Sbjct: 1   MDQAKLARLQQSVRIGKGKGTPRRKTKKVHKSSGTDDKKLQTSLKKLNVQPIQAIEEVNM 60

Query: 61  FKDDV-VIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQ 120
           FK+D  VI F  PKV AS+ +NT+ + G+ + K+L +++PGI+NQLGPD+L +LRKLAE 
Sbjct: 61  FKEDGNVIHFAAPKVHASVPSNTFAIYGNGEDKELTELVPGILNQLGPDSLASLRKLAES 120

Query: 121 FQKQAPGEAAAAAAAAAANAEDDDDDDVPDLVEGQTFEAAAE 161
           +Q    GE        A   +DDDDD++PDLVEG+ FE+  E
Sbjct: 121 YQSMQKGE----GGEDAKKDDDDDDDEIPDLVEGENFESKVE 158

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BLAST of Cp4.1LG20g01770 vs. Swiss-Prot
Match: NACB_ASPNC (Nascent polypeptide-associated complex subunit beta OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=egd1 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 4.4e-35
Identity = 83/161 (51.55%), Postives = 115/161 (71.43%), Query Frame = 1


Query: 1   MDHAKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MD AKL +M  +VR GGKG+ RRK K VHK++  DDK+LQ+TLK++ V  I AIEEVN+F
Sbjct: 1   MDQAKLARMQQSVRIGGKGTPRRKVKKVHKSSGADDKKLQATLKKMNVQPIQAIEEVNMF 60

Query: 61  KDD-VVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF 120
           K+D  VI F  PKV AS+ +NT+ + G+ + K+L +++PGI+NQLGPD+L +LRKLAE +
Sbjct: 61  KEDGNVIHFGAPKVHASVPSNTFALYGNGEEKELTELVPGILNQLGPDSLASLRKLAESY 120

Query: 121 QKQAPGEAAAAAAAAAANAEDDDDDDVPDLVEGQTFEAAAE 161
           Q     +      A A   +DD++DD+PDLVEG+ FE+  E
Sbjct: 121 QNMQKNQ------AGADGKKDDEEDDIPDLVEGENFESNVE 155

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BLAST of Cp4.1LG20g01770 vs. TrEMBL
Match: A0A0A0LTU8_CUCSA (Nascent polypeptide-associated complex subunit beta OS=Cucumis sativus GN=Csa_1G043055 PE=3 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 3.7e-73
Identity = 155/165 (93.94%), Postives = 156/165 (94.55%), Query Frame = 1


Query: 1   MDHAKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDH KLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 77  MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 136

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQF NPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 137 KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 196

Query: 121 KQAPGEAAAAAAAAAANAEDDDDDDVPDLVEGQTFEAAAEESKAS 166
           KQAPG   A AAAAAAN E DDDDDVPDLVEGQTFEAAAEE +AS
Sbjct: 197 KQAPG-VGAGAAAAAANGE-DDDDDVPDLVEGQTFEAAAEEKQAS 239

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BLAST of Cp4.1LG20g01770 vs. TrEMBL
Match: A0A0U4IR75_ZIZJJ (Nascent polypeptide-associated complex subunit beta OS=Ziziphus jujuba GN=BTF3 PE=2 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 2.7e-68
Identity = 144/165 (87.27%), Postives = 151/165 (91.52%), Query Frame = 1


Query: 1   MDHAKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+  KL KMAGAVRTGGKGS+RRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MNREKLMKMAGAVRTGGKGSMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQF+NPKVQASIAANTWVVSGSPQTKKLQDILP I+NQLGPDNLDNL+KLAEQFQ
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPSILNQLGPDNLDNLKKLAEQFQ 120

Query: 121 KQAPGEAAAAAAAAAANAEDDDDDDVPDLVEGQTFEAAAEESKAS 166
           KQAPG A A   AAAA A +DDDDDVPDLV GQTFEAAAEE  A+
Sbjct: 121 KQAPG-AGAGDGAAAATAPEDDDDDVPDLVAGQTFEAAAEEGHAA 164

[Close]

BLAST of Cp4.1LG20g01770 vs. TrEMBL
Match: D7TXR6_VITVI (Nascent polypeptide-associated complex subunit beta OS=Vitis vinifera GN=VIT_17s0053g00620 PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 2.7e-68
Identity = 144/161 (89.44%), Postives = 149/161 (92.55%), Query Frame = 1


Query: 1   MDHAKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+  KL KMAGAVRTGGKGS+RRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MNREKLMKMAGAVRTGGKGSMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQF+NPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 61  KDDVVIQFLNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 121 KQAPGEAAAAAAAAAANAEDDDDDDVPDLVEGQTFEAAAEE 162
           KQAPG  A AAA     A+DDDDD+VPDLV GQTFEAAAEE
Sbjct: 121 KQAPGAGAGAAA-----AQDDDDDEVPDLVAGQTFEAAAEE 156

[Close]

BLAST of Cp4.1LG20g01770 vs. TrEMBL
Match: A0A165WBJ6_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_015291 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 2.6e-66
Identity = 141/164 (85.98%), Postives = 149/164 (90.85%), Query Frame = 1


Query: 1   MDHAKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+  KL KMAGAVRTGGKGSVRRKKKA+HKT TTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MNREKLMKMAGAVRTGGKGSVRRKKKAIHKTATTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQFV+PKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 61  KDDVVIQFVSPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 121 KQAPGEAAAAAAAAAANAEDDDDDDVPDLVEGQTFEAAAEESKA 165
           KQAPG  A A AAA    + DDDD+VP+LV G+TFEAAAEE+ A
Sbjct: 121 KQAPGAGADAGAAA---VQGDDDDEVPELVPGETFEAAAEETPA 161

[Close]

BLAST of Cp4.1LG20g01770 vs. TrEMBL
Match: A0A059A4Q1_EUCGR (Nascent polypeptide-associated complex subunit beta OS=Eucalyptus grandis GN=EUGRSUZ_K02308 PE=3 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 7.4e-66
Identity = 137/165 (83.03%), Postives = 150/165 (90.91%), Query Frame = 1


Query: 1   MDHAKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+  +L KMAG+VRTGGKG++RRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 73  MNRERLMKMAGSVRTGGKGTMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 132

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQF+NPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 133 KDDVVIQFLNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 192

Query: 121 KQAPGEAAAAAAAAAANAEDDDDDDVPDLVEGQTFEAAAEESKAS 166
           KQ PG   AA  + A   +DDDDD+VP+LV G+TFEAAAEE +A+
Sbjct: 193 KQVPG---AATGSGATGMQDDDDDEVPELVPGETFEAAAEEGQAT 234

[Close]

BLAST of Cp4.1LG20g01770 vs. TAIR10
Match: AT1G73230.1 (AT1G73230.1 Nascent polypeptide-associated complex NAC)

HSP 1 Score: 241.5 bits (615), Expect = 3.7e-64
Identity = 130/161 (80.75%), Postives = 140/161 (86.96%), Query Frame = 1


Query: 1   MDHAKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+  KL KMA  VRTGGKG+VRRKKKAVHKTTTTDDKRLQSTLKR+GVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRVGVNSIPAIEEVNIF 60

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQF+NPKVQASIAANTWVVSG+PQTKKLQDILP II+QLGPDNLDNL+KLAEQFQ
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGTPQTKKLQDILPQIISQLGPDNLDNLKKLAEQFQ 120

Query: 121 KQAPGEAAAAAAAAAANAEDDDDDDVPDLVEGQTFEAAAEE 162
           KQAPG    A    A   E+DDDDDVPDLV G+TFE  A E
Sbjct: 121 KQAPG----AGDVPATIQEEDDDDDVPDLVVGETFETPATE 157

[Close]

BLAST of Cp4.1LG20g01770 vs. TAIR10
Match: AT1G17880.1 (AT1G17880.1 basic transcription factor 3)

HSP 1 Score: 239.2 bits (609), Expect = 1.8e-63
Identity = 130/161 (80.75%), Postives = 143/161 (88.82%), Query Frame = 1


Query: 1   MDHAKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+  KL KMA  VRTGGKG+VRRKKKAVHKT TTDDKRLQSTLKRIGVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTNTTDDKRLQSTLKRIGVNSIPAIEEVNIF 60

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQF+NPKVQASIAANTWVVSGSPQTKKLQDILP II+QLGPDN+DNL+KLAEQFQ
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPQIISQLGPDNMDNLKKLAEQFQ 120

Query: 121 KQAPGEAAAAAAAAAANAEDDDDDDVPDLVEGQTFEAAAEE 162
           KQA GE      AA+A  +++DDDDVP+LV G+TFE AAEE
Sbjct: 121 KQASGE----GNAASATIQEEDDDDVPELV-GETFETAAEE 156

[Close]

BLAST of Cp4.1LG20g01770 vs. NCBI nr
Match: gi|659066946|ref|XP_008467234.1| (PREDICTED: transcription factor BTF3 homolog 4-like [Cucumis melo])

HSP 1 Score: 286.2 bits (731), Expect = 3.7e-74
Identity = 154/165 (93.33%), Postives = 156/165 (94.55%), Query Frame = 1


Query: 1   MDHAKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDH KLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQF NPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 61  KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 121 KQAPGEAAAAAAAAAANAEDDDDDDVPDLVEGQTFEAAAEESKAS 166
           KQAPG  A AAAAAAA   +DDDDDVPDLVEGQTFEAAAEE +AS
Sbjct: 121 KQAPGAGAGAAAAAAAANGEDDDDDVPDLVEGQTFEAAAEEKQAS 165

[Close]

BLAST of Cp4.1LG20g01770 vs. NCBI nr
Match: gi|449439495|ref|XP_004137521.1| (PREDICTED: transcription factor BTF3 homolog 4-like [Cucumis sativus])

HSP 1 Score: 282.3 bits (721), Expect = 5.3e-73
Identity = 155/165 (93.94%), Postives = 156/165 (94.55%), Query Frame = 1


Query: 1   MDHAKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDH KLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQF NPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 61  KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 121 KQAPGEAAAAAAAAAANAEDDDDDDVPDLVEGQTFEAAAEESKAS 166
           KQAPG   A AAAAAAN E DDDDDVPDLVEGQTFEAAAEE +AS
Sbjct: 121 KQAPG-VGAGAAAAAANGE-DDDDDVPDLVEGQTFEAAAEEKQAS 163

[Close]

BLAST of Cp4.1LG20g01770 vs. NCBI nr
Match: gi|700209106|gb|KGN64202.1| (hypothetical protein Csa_1G043055 [Cucumis sativus])

HSP 1 Score: 282.3 bits (721), Expect = 5.3e-73
Identity = 155/165 (93.94%), Postives = 156/165 (94.55%), Query Frame = 1


Query: 1   MDHAKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDH KLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 77  MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 136

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQF NPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 137 KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 196

Query: 121 KQAPGEAAAAAAAAAANAEDDDDDDVPDLVEGQTFEAAAEESKAS 166
           KQAPG   A AAAAAAN E DDDDDVPDLVEGQTFEAAAEE +AS
Sbjct: 197 KQAPG-VGAGAAAAAANGE-DDDDDVPDLVEGQTFEAAAEEKQAS 239

[Close]

BLAST of Cp4.1LG20g01770 vs. NCBI nr
Match: gi|1009133550|ref|XP_015883963.1| (PREDICTED: transcription factor BTF3 homolog 4-like [Ziziphus jujuba])

HSP 1 Score: 266.2 bits (679), Expect = 3.9e-68
Identity = 144/165 (87.27%), Postives = 151/165 (91.52%), Query Frame = 1


Query: 1   MDHAKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+  KL KMAGAVRTGGKGS+RRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MNREKLMKMAGAVRTGGKGSMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQF+NPKVQASIAANTWVVSGSPQTKKLQDILP I+NQLGPDNLDNL+KLAEQFQ
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPSILNQLGPDNLDNLKKLAEQFQ 120

Query: 121 KQAPGEAAAAAAAAAANAEDDDDDDVPDLVEGQTFEAAAEESKAS 166
           KQAPG A A   AAAA A +DDDDDVPDLV GQTFEAAAEE  A+
Sbjct: 121 KQAPG-AGAGDGAAAATAPEDDDDDVPDLVAGQTFEAAAEEGHAA 164

[Close]

BLAST of Cp4.1LG20g01770 vs. NCBI nr
Match: gi|225457458|ref|XP_002265041.1| (PREDICTED: transcription factor BTF3 homolog 4 [Vitis vinifera])

HSP 1 Score: 266.2 bits (679), Expect = 3.9e-68
Identity = 144/161 (89.44%), Postives = 149/161 (92.55%), Query Frame = 1


Query: 1   MDHAKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+  KL KMAGAVRTGGKGS+RRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MNREKLMKMAGAVRTGGKGSMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQF+NPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 61  KDDVVIQFLNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 121 KQAPGEAAAAAAAAAANAEDDDDDDVPDLVEGQTFEAAAEE 162
           KQAPG  A AAA     A+DDDDD+VPDLV GQTFEAAAEE
Sbjct: 121 KQAPGAGAGAAA-----AQDDDDDEVPDLVAGQTFEAAAEE 156

The following BLAST results are available for this feature:

BLAST of Cp4.1LG20g01770 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BTF3L_ARATH	6.5e-63	80.75	Nascent polypeptide-associated complex subunit beta OS=Arabidopsis thaliana GN=A...	[more]
BTF3_ARATH	3.2e-62	80.75	Basic transcription factor 3 OS=Arabidopsis thaliana GN=BTF3 PE=1 SV=1	[more]
BT3L4_DANRE	2.0e-35	55.92	Transcription factor BTF3 homolog 4 OS=Danio rerio GN=btf3l4 PE=2 SV=1	[more]
NACB_AJECN	3.4e-35	51.85	Nascent polypeptide-associated complex subunit beta OS=Ajellomyces capsulatus (s...	[more]
NACB_ASPNC	4.4e-35	51.55	Nascent polypeptide-associated complex subunit beta OS=Aspergillus niger (strain...	[more]

BLAST of Cp4.1LG20g01770 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTU8_CUCSA	3.7e-73	93.94	Nascent polypeptide-associated complex subunit beta OS=Cucumis sativus GN=Csa_1G...	[more]
A0A0U4IR75_ZIZJJ	2.7e-68	87.27	Nascent polypeptide-associated complex subunit beta OS=Ziziphus jujuba GN=BTF3 P...	[more]
D7TXR6_VITVI	2.7e-68	89.44	Nascent polypeptide-associated complex subunit beta OS=Vitis vinifera GN=VIT_17s...	[more]
A0A165WBJ6_DAUCA	2.6e-66	85.98	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_015291 PE=4 SV=1	[more]
A0A059A4Q1_EUCGR	7.4e-66	83.03	Nascent polypeptide-associated complex subunit beta OS=Eucalyptus grandis GN=EUG...	[more]

BLAST of Cp4.1LG20g01770 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G73230.1	3.7e-64	80.75	Nascent polypeptide-associated complex NAC	[more]
AT1G17880.1	1.8e-63	80.75	basic transcription factor 3	[more]

BLAST of Cp4.1LG20g01770 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659066946\|ref\|XP_008467234.1\|	3.7e-74	93.33	PREDICTED: transcription factor BTF3 homolog 4-like [Cucumis melo]	[more]
gi\|449439495\|ref\|XP_004137521.1\|	5.3e-73	93.94	PREDICTED: transcription factor BTF3 homolog 4-like [Cucumis sativus]	[more]
gi\|700209106\|gb\|KGN64202.1\|	5.3e-73	93.94	hypothetical protein Csa_1G043055 [Cucumis sativus]	[more]
gi\|1009133550\|ref\|XP_015883963.1\|	3.9e-68	87.27	PREDICTED: transcription factor BTF3 homolog 4-like [Ziziphus jujuba]	[more]
gi\|225457458\|ref\|XP_002265041.1\|	3.9e-68	89.44	PREDICTED: transcription factor BTF3 homolog 4 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002715	Nas_poly-pep-assoc_cplx_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG20g01770.1	Cp4.1LG20g01770.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002715	Nascent polypeptide-associated complex NAC domain	PFAM	PF01849	NAC	coord: 36..91 score: 1.0
IPR002715	Nascent polypeptide-associated complex NAC domain	SMART	SM01407	NAC_2	coord: 36..91 score: 1.1
IPR002715	Nascent polypeptide-associated complex NAC domain	PROFILE	PS51151	NAC_AB	coord: 33..97 score: 15
None	No IPR available	PANTHER	PTHR10351	TRANSCRIPTION FACTOR BTF3	coord: 1..163 score: 1.9E
None	No IPR available	PANTHER	PTHR10351:SF50	SUBFAMILY NOT NAMED	coord: 1..163 score: 1.9E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG20g01770	Cucsa.122190	Cucumber (Gy14) v1	cgycpeB0308
Cp4.1LG20g01770	CmaCh13G009680	Cucurbita maxima (Rimu)	cmacpeB234
Cp4.1LG20g01770	CmaCh18G000920	Cucurbita maxima (Rimu)	cmacpeB439
Cp4.1LG20g01770	CmoCh13G010020	Cucurbita moschata (Rifu)	cmocpeB201
Cp4.1LG20g01770	CmoCh18G000690	Cucurbita moschata (Rifu)	cmocpeB404
Cp4.1LG20g01770	Cla008391	Watermelon (97103) v1	cpewmB512
Cp4.1LG20g01770	MELO3C002159	Melon (DHL92) v3.5.1	cpemeB478
Cp4.1LG20g01770	ClCG01G014900	Watermelon (Charleston Gray)	cpewcgB454
Cp4.1LG20g01770	Lsi02G002620	Bottle gourd (USVL1VR-Ls)	cpelsiB418
Cp4.1LG20g01770	MELO3C002159.2	Melon (DHL92) v3.6.1	cpemedB560
Cp4.1LG20g01770	Bhi08G001103	Wax gourd	cpewgoB0635
Cp4.1LG20g01770	CsGy1G007320	Cucumber (Gy14) v2	cgybcpeB069
Cp4.1LG20g01770	Carg04871	Silver-seed gourd	carcpeB0544
Cp4.1LG20g01770	Carg06647	Silver-seed gourd	carcpeB0696

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG20g01770	Cp4.1LG09g11010	Cucurbita pepo (Zucchini)	cpecpeB049

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG20g01770	Cucumber (Chinese Long) v3	cpecucB0623
Cp4.1LG20g01770	Wild cucumber (PI 183967)	cpecpiB505
Cp4.1LG20g01770	Cucumber (Chinese Long) v2	cpecuB505