CmaCh18G000920 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh18G000920
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Nascent polypeptide-associated complex subunit beta
Location	Cma_Chr18 : 427312 .. 430754 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCACTTCTCATCGCCTTCTTGATCCTATGTGCTTCTTACTATTTTCGGATTGTTCTTCGACGATGAATTTTCTCTTCTGAGTGTTCTATTGTAGCGCATTTTCATTTTATAGCTTTGGAGCCGGATTTTTCCTTTTCTATTAAGGTGTTTGTCGATTTGATAGATTGCTATGTCTTTGAAACTGATCGTCGTTGATTTTCTTATGTTAAACTTGCTTGTGATGTCGGATTTCTTGCGACTCTACAGATCGTAATGACTAAATATATACTAGCGTTGATTGCATCCTTCGATTGGACGTTCAGAAATGAACAATGAAAAACCTAGGTTAGATGAATTAGTCGAACTGTAATTACAGTACGAGCAGAAGCTTACTTTTCACGAATGTTTTTCCGTGAAATGTTGACGGCCTCTCTAGGACAATCTCACTCATGTACTCTCTACGATGAATATGAGGAAATGAATGGATAATTTGTAACTGAAAATATTTTTTGGATAAGCTTAGGCCTCGATAATGATTTTCAGTTTTGCCTTTCTTGCGGATATCGTTATTGTTAATTGATTCTTCTAATAAGTTTTTTGTTTGATTTATAGTTGTAAAAGATATAGCCGAGCACATGTATGCGTTAATCTGTTTTACCTCTCTTTTCTCCGTTGACTAATCTCTGTTTTTTTTTTTAATTGCTCTTATACAAATCTCCGCGTCTTGTATTTTCTTAATCACTTGTTAAGTTTTCAATTATCGTTAGTCTTGTATTTGTTCCTATATTGTGCAGATGGATCATACCAAGCTCCAGAAGATGGCTGGTGCAGTTCGCACTGGAGGAAAAGGTAGCGTGAGAAGGTGAGTTTCATCTGCATCTTTTGAAAGTTAATTAGTGTGTGAGAAGAGTTAGTTATCTGTTGCTTGATTTACTTAATAAGGAGTTGGAAATTAATTCTGGAATATGGAGCTCTTAAAAGTTTTATCTGGACGTGCTTGATTATATTTTATTTGTTGGTGAGTAATTTCATTGAACCATGTTTTACGTGAAATAACATCATCCAACTGTAGACTTGGCATGATCCTAAGGATGAAGGTAACATGATATGTATACACCGTTCCCCATCTACTTCTGATTTTCTCTGTTTTCTCATCCATCATTCTATTAGTTCTAATGGATTTCTTTATTGTAATCTGTGAAGTTTGCTTTTGATAGTAGTTCATTTTGAAAATTTGATTTACAGCTATTGGTTTACCATTGACAACATATATGATTCTTCTTTATCGCACTACTTGGTTGACTAATGGATGAATTCACAAACATAAATTTCATGCTTGTTTGTGTATTGCATCGTTCATTTAAGCAGGTTGTTTTCTCTCGATATTTTCCCATGCTTTCTGAACAAGATAATTTTGTTTTGCTGTGGGAATATCATTTTCATACTCTTTTTTCAAAGATCGTTTTTTTTCCCTCATTTTTTTTAAATTTTCTTTGTCTGTTGTCAATTGAAGGAAGAAGAAAGCTGTTCACAAAACAACTACCACAGATGATAAACGGCTTCAAAGTACCTTGAAGAGAATAGGAGTTAATGCCATTCCTGCAATTGAGGAAGTCAACATCTTCAAGGATGATGTAGTTATTCAATTTACCAACCCGAAAGGTAAAGCCACTCAACTACCCTTTGGCTCTTTACCATCTATATCTTGATAGGTACAATATCTAATGTTTAGTTGTTTCTTGTTCTCTATTTCAGTTCAAGCTTCTATTGCAGCAAACACCTGGGTTGTTAGTGGTACTCCTCAAACGAAAAGTAAGTCTCTCCCAACACTTATTGAATAGAATGAAACATATAACTGATCTTGTGTCGTCGAGTCTAGGGGGATTCTTTGAGTAGTTCTCTACAATGGAACACTTTCTGTTTTTTGGAAAATCGGTCGTATAATTTTTAAAACAAAAGAATAGCCTAAATGAAACATCGTATAGTTGTATCTGCTGTATTTTACTTGGCTATTCACTTCCAATTGTATAGTTCTGGTTTTCAAACCATTTCTAACTCAATGATGAATACTGCTAATCAAAAGTGTTCATAAGGAGTCGTTTTGGGAATGCTATATAAAAACTATTCAATTTTTTTACGAAATTTTTTTATTCTTTAAATAAGGGGAACTTAGTTGGACAGTGAAACGTTTGAAGCTGTAATGAAACGAGTTATTCTTGAAGTAAATGTTAATTGGATGCAAACCTTCAAGTGTTTTTAGTTGTGACGTTTTATTGTAATGCAATAAAATTGTGCGAGGGTTCTTAGGGATTAGGATTATATTGTTGAAAATTTTATCGAACCAGCATGTTCTCGTTGGCTTGGAAGTTGTAATGTGTCATAATAAGGGGGTTTGCTCAAATTCTAATGGACTGTTCCACTAGGTCCAGCATAGGAAGACATCTGTTCTACTTGAAACTGAATAATCTTTATAAATTATAGAATAGTTGACCGTCGTTAAATTATGTCGTTCTTGACATTTACTTGAATTGCAACATTGTCAATTGTAACATCTAATCTGTTCCTATCTTATATGTATGCTGTGTAAATGAGCACCTTGTTTGTTTGTCGTAAAGAATTGTTACCTAAAGCAAGTCCCAAAGATGAAAAAAGTCTAACGTCTTGTTCAGGCAAGAAATTATGAAGATGTCATGGTTGGAATTTTTTATCTTATATGCCCTCTTTAATAATTTGATTTCTTTTCACAGAATTGCAGGATATTCTTCCTGGAATTATCAATCAGTTGGGTTAGTATGCTACTGTTTTCGTGTTTCCGCTGTGTTGTAGATTTAGTAAAAGATCGAACACTGACTCAATTCACATGTCAATATTTTAGGACCTGATAACTTGGACAATCTGAGGAAGTTGGCTGAGCAGTTCCAGAAGCAAGCACCTGGGGCAGGTGCTGGTGCTGCCAATGCACAGGATGATGATGATGACGACGATGTTCCCGACCTCGTTGAAGGACAGACTTTCGAAGCTGCTGCAGAAGAGAAGCAAGCTTCCTAGAGAGGACCAATCTCTTGGGATGATTTTGTTTAGTTTTTACATATTTTTAATGTTTGGAAGAGTCCTTTTTTCTCCTTGTATTTGTTTTTGCTAATCTTGTTTCCCATGGCATTTTACTCGCTCCACCCTCTTGTAACCCTTTGGATGGATGGATGGATGGATGGATTGGATTTTCTATTACCCCACCCCCCTTCAACAGCCTTACTTCCTCGGGAACGCTTTTTATATATAGGCGCTGAATTAATGCCCCTTCCATCCGCCCAATCCAACGAAAAATCTGGGTATCGAACATGAGCTAGCTTTGTACGCGGATGCGAGGTATTCATGTCAATTTCTTCACCTTAGTTCTCATACTATTATTGTAGCGCATTTTAGTCATTATTCTAGAATTTTTGAGTTAAAGCTAACGAGGAA

mRNA sequence

CTTCACTTCTCATCGCCTTCTTGATCCTATGTGCTTCTTACTATTTTCGGATTGTTCTTCGACGATGAATTTTCTCTTCTGAGTGTTCTATTGTAGCGCATTTTCATTTTATAGCTTTGGAGCCGGATTTTTCCTTTTCTATTAAGATGGATCATACCAAGCTCCAGAAGATGGCTGGTGCAGTTCGCACTGGAGGAAAAGGTAGCGTGAGAAGGAAGAAGAAAGCTGTTCACAAAACAACTACCACAGATGATAAACGGCTTCAAAGTACCTTGAAGAGAATAGGAGTTAATGCCATTCCTGCAATTGAGGAAGTCAACATCTTCAAGGATGATGTAGTTATTCAATTTACCAACCCGAAAGTTCAAGCTTCTATTGCAGCAAACACCTGGGTTGTTAGTGGTACTCCTCAAACGAAAAAATTGCAGGATATTCTTCCTGGAATTATCAATCAGTTGGGACCTGATAACTTGGACAATCTGAGGAAGTTGGCTGAGCAGTTCCAGAAGCAAGCACCTGGGGCAGGTGCTGGTGCTGCCAATGCACAGGATGATGATGATGACGACGATGTTCCCGACCTCGTTGAAGGACAGACTTTCGAAGCTGCTGCAGAAGAGAAGCAAGCTTCCTAGAGAGGACCAATCTCTTGGGATGATTTTGTTTAGTTTTTACATATTTTTAATGTTTGGAAGAGTCCTTTTTTCTCCTTGTATTTGTTTTTGCTAATCTTGTTTCCCATGGCATTTTACTCGCTCCACCCTCTTGTAACCCTTTGGATGGATGGATGGATGGATGGATTGGATTTTCTATTACCCCACCCCCCTTCAACAGCCTTACTTCCTCGGGAACGCTTTTTATATATAGGCGCTGAATTAATGCCCCTTCCATCCGCCCAATCCAACGAAAAATCTGGGTATCGAACATGAGCTAGCTTTGTACGCGGATGCGAGGTATTCATGTCAATTTCTTCACCTTAGTTCTCATACTATTATTGTAGCGCATTTTAGTCATTATTCTAGAATTTTTGAGTTAAAGCTAACGAGGAA

Coding sequence (CDS)

ATGGATCATACCAAGCTCCAGAAGATGGCTGGTGCAGTTCGCACTGGAGGAAAAGGTAGCGTGAGAAGGAAGAAGAAAGCTGTTCACAAAACAACTACCACAGATGATAAACGGCTTCAAAGTACCTTGAAGAGAATAGGAGTTAATGCCATTCCTGCAATTGAGGAAGTCAACATCTTCAAGGATGATGTAGTTATTCAATTTACCAACCCGAAAGTTCAAGCTTCTATTGCAGCAAACACCTGGGTTGTTAGTGGTACTCCTCAAACGAAAAAATTGCAGGATATTCTTCCTGGAATTATCAATCAGTTGGGACCTGATAACTTGGACAATCTGAGGAAGTTGGCTGAGCAGTTCCAGAAGCAAGCACCTGGGGCAGGTGCTGGTGCTGCCAATGCACAGGATGATGATGATGACGACGATGTTCCCGACCTCGTTGAAGGACAGACTTTCGAAGCTGCTGCAGAAGAGAAGCAAGCTTCCTAG

Protein sequence

MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPGAGAGAANAQDDDDDDDVPDLVEGQTFEAAAEEKQAS

Homology

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BLAST of CmaCh18G000920 vs. Swiss-Prot
Match: BTF3L_ARATH (Nascent polypeptide-associated complex subunit beta OS=Arabidopsis thaliana GN=At1g73230 PE=2 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 2.1e-66
Identity = 132/158 (83.54%), Postives = 142/158 (89.87%), Query Frame = 1


Query: 1   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+  KL KMA  VRTGGKG+VRRKKKAVHKTTTTDDKRLQSTLKR+GVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRVGVNSIPAIEEVNIF 60

Query: 61  KDDVVIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQF NPKVQASIAANTWVVSGTPQTKKLQDILP II+QLGPDNLDNL+KLAEQFQ
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGTPQTKKLQDILPQIISQLGPDNLDNLKKLAEQFQ 120

Query: 121 KQAPGAGAGAANAQDDDDDDDVPDLVEGQTFEAAAEEK 159
           KQAPGAG   A  Q++DDDDDVPDLV G+TFE  A E+
Sbjct: 121 KQAPGAGDVPATIQEEDDDDDVPDLVVGETFETPATEE 158

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BLAST of CmaCh18G000920 vs. Swiss-Prot
Match: BTF3_ARATH (Basic transcription factor 3 OS=Arabidopsis thaliana GN=BTF3 PE=1 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 8.3e-63
Identity = 128/158 (81.01%), Postives = 140/158 (88.61%), Query Frame = 1


Query: 1   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+  KL KMA  VRTGGKG+VRRKKKAVHKT TTDDKRLQSTLKRIGVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTNTTDDKRLQSTLKRIGVNSIPAIEEVNIF 60

Query: 61  KDDVVIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQF NPKVQASIAANTWVVSG+PQTKKLQDILP II+QLGPDN+DNL+KLAEQFQ
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPQIISQLGPDNMDNLKKLAEQFQ 120

Query: 121 KQAPGAGAGAANAQDDDDDDDVPDLVEGQTFEAAAEEK 159
           KQA G G  A+    ++DDDDVP+LV G+TFE AAEEK
Sbjct: 121 KQASGEGNAASATIQEEDDDDVPELV-GETFETAAEEK 157

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BLAST of CmaCh18G000920 vs. Swiss-Prot
Match: NACB_AJECN (Nascent polypeptide-associated complex subunit beta OS=Ajellomyces capsulatus (strain NAm1 / WU24) GN=EGD1 PE=3 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 9.2e-38
Identity = 84/158 (53.16%), Postives = 114/158 (72.15%), Query Frame = 1


Query: 1   MDHTKLQKMAGAVRTG-GKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNI 60
           MD  KL ++  +VR G GKG+ RRK K VHK++ TDDK+LQ++LK++ V  I AIEEVN+
Sbjct: 1   MDQAKLARLQQSVRIGKGKGTPRRKTKKVHKSSGTDDKKLQTSLKKLNVQPIQAIEEVNM 60

Query: 61  FKDDV-VIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQLGPDNLDNLRKLAEQ 120
           FK+D  VI F  PKV AS+ +NT+ + G  + K+L +++PGI+NQLGPD+L +LRKLAE 
Sbjct: 61  FKEDGNVIHFAAPKVHASVPSNTFAIYGNGEDKELTELVPGILNQLGPDSLASLRKLAES 120

Query: 121 FQKQAPGAGAGAANAQDDDDDDDVPDLVEGQTFEAAAE 157
           +Q    G G   A   DDDDDD++PDLVEG+ FE+  E
Sbjct: 121 YQSMQKGEGGEDAKKDDDDDDDEIPDLVEGENFESKVE 158

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BLAST of CmaCh18G000920 vs. Swiss-Prot
Match: BT3L4_DANRE (Transcription factor BTF3 homolog 4 OS=Danio rerio GN=btf3l4 PE=2 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.3e-36
Identity = 88/160 (55.00%), Postives = 118/160 (73.75%), Query Frame = 1


Query: 1   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+  KL K+   VR GGKG+ RRKKK VH+T T DDK+LQS+LK++ VN I  IEEVN+ 
Sbjct: 1   MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLVVNNIAGIEEVNMI 60

Query: 61  KDD-VVIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF 120
           KDD  VI F NPKVQAS++ANT+ ++G  +TK+L ++LPGI++QLG D+L +LRKLAEQF
Sbjct: 61  KDDGTVIHFNNPKVQASLSANTFAITGHAETKQLTEMLPGILSQLGADSLTSLRKLAEQF 120

Query: 121 QKQAPGAGAGAANAQD-DDDDDDVPDLVEGQTFEAAAEEK 159
            +Q       A  A+D D++DDDVPDLVE   F+ A++ +
Sbjct: 121 PRQV--LDNKAPKAEDIDEEDDDVPDLVE--NFDEASKNE 156

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BLAST of CmaCh18G000920 vs. Swiss-Prot
Match: NACB_PHANO (Nascent polypeptide-associated complex subunit beta OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=EGD1 PE=3 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 8.6e-36
Identity = 82/158 (51.90%), Postives = 110/158 (69.62%), Query Frame = 1


Query: 1   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MD  KL +M  +VR GGKG+ RRK K VHK++ TDDK+LQ+ LK++ V  I AIEEVN+F
Sbjct: 1   MDQAKLARMQASVRIGGKGTPRRKVKKVHKSSGTDDKKLQTALKKLNVQPIQAIEEVNMF 60

Query: 61  KDDV-VIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF 120
           K D  VI F+ PKV AS+ +NT+ + G  + K+L +++PGI+NQLGPD+L +LRKLAE +
Sbjct: 61  KSDGNVIHFSAPKVHASVPSNTFAIYGNGEDKELTELVPGILNQLGPDSLASLRKLAESY 120

Query: 121 QKQAPGAGA-GAANAQDDDDDDDVPDLVEGQTFEAAAE 157
           Q      G  G     DD+DDDD+P+LV G  FE+  E
Sbjct: 121 QSMQKEKGEDGDKKDDDDEDDDDIPELVAGDNFESKTE 158

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BLAST of CmaCh18G000920 vs. TrEMBL
Match: A0A0A0LTU8_CUCSA (Nascent polypeptide-associated complex subunit beta OS=Cucumis sativus GN=Csa_1G043055 PE=3 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 7.7e-76
Identity = 155/163 (95.09%), Postives = 157/163 (96.32%), Query Frame = 1


Query: 1   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 77  MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 136

Query: 61  KDDVVIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQFTNPKVQASIAANTWVVSG+PQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 137 KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 196

Query: 121 KQAPGAGAG--AANAQDDDDDDDVPDLVEGQTFEAAAEEKQAS 162
           KQAPG GAG  AA A  +DDDDDVPDLVEGQTFEAAAEEKQAS
Sbjct: 197 KQAPGVGAGAAAAAANGEDDDDDVPDLVEGQTFEAAAEEKQAS 239

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BLAST of CmaCh18G000920 vs. TrEMBL
Match: D7TXR6_VITVI (Nascent polypeptide-associated complex subunit beta OS=Vitis vinifera GN=VIT_17s0053g00620 PE=3 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 9.8e-71
Identity = 146/157 (92.99%), Postives = 150/157 (95.54%), Query Frame = 1


Query: 1   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+  KL KMAGAVRTGGKGS+RRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MNREKLMKMAGAVRTGGKGSMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQF NPKVQASIAANTWVVSG+PQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 61  KDDVVIQFLNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 121 KQAPGAGAGAANAQDDDDDDDVPDLVEGQTFEAAAEE 158
           KQAPGAGAGAA AQ DDDDD+VPDLV GQTFEAAAEE
Sbjct: 121 KQAPGAGAGAAAAQ-DDDDDEVPDLVAGQTFEAAAEE 156

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BLAST of CmaCh18G000920 vs. TrEMBL
Match: A0A0U4IR75_ZIZJJ (Nascent polypeptide-associated complex subunit beta OS=Ziziphus jujuba GN=BTF3 PE=2 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 4.6e-68
Identity = 142/164 (86.59%), Postives = 149/164 (90.85%), Query Frame = 1


Query: 1   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+  KL KMAGAVRTGGKGS+RRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MNREKLMKMAGAVRTGGKGSMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQF NPKVQASIAANTWVVSG+PQTKKLQDILP I+NQLGPDNLDNL+KLAEQFQ
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPSILNQLGPDNLDNLKKLAEQFQ 120

Query: 121 KQAPGAGAG---AANAQDDDDDDDVPDLVEGQTFEAAAEEKQAS 162
           KQAPGAGAG   AA    +DDDDDVPDLV GQTFEAAAEE  A+
Sbjct: 121 KQAPGAGAGDGAAAATAPEDDDDDVPDLVAGQTFEAAAEEGHAA 164

[Close]

BLAST of CmaCh18G000920 vs. TrEMBL
Match: V4TML2_9ROSI (Nascent polypeptide-associated complex subunit beta OS=Citrus clementina GN=CICLE_v10022594mg PE=3 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 5.9e-68
Identity = 141/158 (89.24%), Postives = 146/158 (92.41%), Query Frame = 1


Query: 1   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+  KL KMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQF NPKVQASIAANTWVVSG PQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 61  KDDVVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 121 KQAPGAGAGAANAQDDDDDDDVPDLVEGQTFEAAAEEK 159
           KQAP AG GA   Q +DDDD+VP+LV G+TFEAAAEEK
Sbjct: 121 KQAPNAGTGAPTTQ-EDDDDEVPELVAGETFEAAAEEK 157

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BLAST of CmaCh18G000920 vs. TrEMBL
Match: A0A067EXA0_CITSI (Nascent polypeptide-associated complex subunit beta OS=Citrus sinensis GN=CISIN_1g031135mg PE=3 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 5.9e-68
Identity = 141/158 (89.24%), Postives = 146/158 (92.41%), Query Frame = 1


Query: 1   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+  KL KMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQF NPKVQASIAANTWVVSG PQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 61  KDDVVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 121 KQAPGAGAGAANAQDDDDDDDVPDLVEGQTFEAAAEEK 159
           KQAP AG GA   Q +DDDD+VP+LV G+TFEAAAEEK
Sbjct: 121 KQAPNAGTGAPTTQ-EDDDDEVPELVAGETFEAAAEEK 157

[Close]

BLAST of CmaCh18G000920 vs. TAIR10
Match: AT1G73230.1 (AT1G73230.1 Nascent polypeptide-associated complex NAC)

HSP 1 Score: 253.1 bits (645), Expect = 1.2e-67
Identity = 132/158 (83.54%), Postives = 142/158 (89.87%), Query Frame = 1


Query: 1   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+  KL KMA  VRTGGKG+VRRKKKAVHKTTTTDDKRLQSTLKR+GVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRVGVNSIPAIEEVNIF 60

Query: 61  KDDVVIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQF NPKVQASIAANTWVVSGTPQTKKLQDILP II+QLGPDNLDNL+KLAEQFQ
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGTPQTKKLQDILPQIISQLGPDNLDNLKKLAEQFQ 120

Query: 121 KQAPGAGAGAANAQDDDDDDDVPDLVEGQTFEAAAEEK 159
           KQAPGAG   A  Q++DDDDDVPDLV G+TFE  A E+
Sbjct: 121 KQAPGAGDVPATIQEEDDDDDVPDLVVGETFETPATEE 158

[Close]

BLAST of CmaCh18G000920 vs. TAIR10
Match: AT1G17880.1 (AT1G17880.1 basic transcription factor 3)

HSP 1 Score: 241.1 bits (614), Expect = 4.7e-64
Identity = 128/158 (81.01%), Postives = 140/158 (88.61%), Query Frame = 1


Query: 1   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+  KL KMA  VRTGGKG+VRRKKKAVHKT TTDDKRLQSTLKRIGVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTNTTDDKRLQSTLKRIGVNSIPAIEEVNIF 60

Query: 61  KDDVVIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQF NPKVQASIAANTWVVSG+PQTKKLQDILP II+QLGPDN+DNL+KLAEQFQ
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPQIISQLGPDNMDNLKKLAEQFQ 120

Query: 121 KQAPGAGAGAANAQDDDDDDDVPDLVEGQTFEAAAEEK 159
           KQA G G  A+    ++DDDDVP+LV G+TFE AAEEK
Sbjct: 121 KQASGEGNAASATIQEEDDDDVPELV-GETFETAAEEK 157

[Close]

BLAST of CmaCh18G000920 vs. NCBI nr
Match: gi|659066946|ref|XP_008467234.1| (PREDICTED: transcription factor BTF3 homolog 4-like [Cucumis melo])

HSP 1 Score: 292.0 bits (746), Expect = 6.5e-76
Identity = 156/165 (94.55%), Postives = 158/165 (95.76%), Query Frame = 1


Query: 1   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQFTNPKVQASIAANTWVVSG+PQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 61  KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 121 KQAPGAGAG----AANAQDDDDDDDVPDLVEGQTFEAAAEEKQAS 162
           KQAPGAGAG    AA A  +DDDDDVPDLVEGQTFEAAAEEKQAS
Sbjct: 121 KQAPGAGAGAAAAAAAANGEDDDDDVPDLVEGQTFEAAAEEKQAS 165

[Close]

BLAST of CmaCh18G000920 vs. NCBI nr
Match: gi|449439495|ref|XP_004137521.1| (PREDICTED: transcription factor BTF3 homolog 4-like [Cucumis sativus])

HSP 1 Score: 291.2 bits (744), Expect = 1.1e-75
Identity = 155/163 (95.09%), Postives = 157/163 (96.32%), Query Frame = 1


Query: 1   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQFTNPKVQASIAANTWVVSG+PQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 61  KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 121 KQAPGAGAG--AANAQDDDDDDDVPDLVEGQTFEAAAEEKQAS 162
           KQAPG GAG  AA A  +DDDDDVPDLVEGQTFEAAAEEKQAS
Sbjct: 121 KQAPGVGAGAAAAAANGEDDDDDVPDLVEGQTFEAAAEEKQAS 163

[Close]

BLAST of CmaCh18G000920 vs. NCBI nr
Match: gi|700209106|gb|KGN64202.1| (hypothetical protein Csa_1G043055 [Cucumis sativus])

HSP 1 Score: 291.2 bits (744), Expect = 1.1e-75
Identity = 155/163 (95.09%), Postives = 157/163 (96.32%), Query Frame = 1


Query: 1   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 77  MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 136

Query: 61  KDDVVIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQFTNPKVQASIAANTWVVSG+PQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 137 KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 196

Query: 121 KQAPGAGAG--AANAQDDDDDDDVPDLVEGQTFEAAAEEKQAS 162
           KQAPG GAG  AA A  +DDDDDVPDLVEGQTFEAAAEEKQAS
Sbjct: 197 KQAPGVGAGAAAAAANGEDDDDDVPDLVEGQTFEAAAEEKQAS 239

[Close]

BLAST of CmaCh18G000920 vs. NCBI nr
Match: gi|225457458|ref|XP_002265041.1| (PREDICTED: transcription factor BTF3 homolog 4 [Vitis vinifera])

HSP 1 Score: 274.2 bits (700), Expect = 1.4e-70
Identity = 146/157 (92.99%), Postives = 150/157 (95.54%), Query Frame = 1


Query: 1   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+  KL KMAGAVRTGGKGS+RRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MNREKLMKMAGAVRTGGKGSMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQF NPKVQASIAANTWVVSG+PQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 61  KDDVVIQFLNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 121 KQAPGAGAGAANAQDDDDDDDVPDLVEGQTFEAAAEE 158
           KQAPGAGAGAA AQ DDDDD+VPDLV GQTFEAAAEE
Sbjct: 121 KQAPGAGAGAAAAQ-DDDDDEVPDLVAGQTFEAAAEE 156

[Close]

BLAST of CmaCh18G000920 vs. NCBI nr
Match: gi|1009133550|ref|XP_015883963.1| (PREDICTED: transcription factor BTF3 homolog 4-like [Ziziphus jujuba])

HSP 1 Score: 265.4 bits (677), Expect = 6.5e-68
Identity = 142/164 (86.59%), Postives = 149/164 (90.85%), Query Frame = 1


Query: 1   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+  KL KMAGAVRTGGKGS+RRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MNREKLMKMAGAVRTGGKGSMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQF NPKVQASIAANTWVVSG+PQTKKLQDILP I+NQLGPDNLDNL+KLAEQFQ
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPSILNQLGPDNLDNLKKLAEQFQ 120

Query: 121 KQAPGAGAG---AANAQDDDDDDDVPDLVEGQTFEAAAEEKQAS 162
           KQAPGAGAG   AA    +DDDDDVPDLV GQTFEAAAEE  A+
Sbjct: 121 KQAPGAGAGDGAAAATAPEDDDDDVPDLVAGQTFEAAAEEGHAA 164

The following BLAST results are available for this feature:

BLAST of CmaCh18G000920 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BTF3L_ARATH	2.1e-66	83.54	Nascent polypeptide-associated complex subunit beta OS=Arabidopsis thaliana GN=A...	[more]
BTF3_ARATH	8.3e-63	81.01	Basic transcription factor 3 OS=Arabidopsis thaliana GN=BTF3 PE=1 SV=1	[more]
NACB_AJECN	9.2e-38	53.16	Nascent polypeptide-associated complex subunit beta OS=Ajellomyces capsulatus (s...	[more]
BT3L4_DANRE	1.3e-36	55.00	Transcription factor BTF3 homolog 4 OS=Danio rerio GN=btf3l4 PE=2 SV=1	[more]
NACB_PHANO	8.6e-36	51.90	Nascent polypeptide-associated complex subunit beta OS=Phaeosphaeria nodorum (st...	[more]

BLAST of CmaCh18G000920 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTU8_CUCSA	7.7e-76	95.09	Nascent polypeptide-associated complex subunit beta OS=Cucumis sativus GN=Csa_1G...	[more]
D7TXR6_VITVI	9.8e-71	92.99	Nascent polypeptide-associated complex subunit beta OS=Vitis vinifera GN=VIT_17s...	[more]
A0A0U4IR75_ZIZJJ	4.6e-68	86.59	Nascent polypeptide-associated complex subunit beta OS=Ziziphus jujuba GN=BTF3 P...	[more]
V4TML2_9ROSI	5.9e-68	89.24	Nascent polypeptide-associated complex subunit beta OS=Citrus clementina GN=CICL...	[more]
A0A067EXA0_CITSI	5.9e-68	89.24	Nascent polypeptide-associated complex subunit beta OS=Citrus sinensis GN=CISIN_...	[more]

BLAST of CmaCh18G000920 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G73230.1	1.2e-67	83.54	Nascent polypeptide-associated complex NAC	[more]
AT1G17880.1	4.7e-64	81.01	basic transcription factor 3	[more]

BLAST of CmaCh18G000920 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659066946\|ref\|XP_008467234.1\|	6.5e-76	94.55	PREDICTED: transcription factor BTF3 homolog 4-like [Cucumis melo]	[more]
gi\|449439495\|ref\|XP_004137521.1\|	1.1e-75	95.09	PREDICTED: transcription factor BTF3 homolog 4-like [Cucumis sativus]	[more]
gi\|700209106\|gb\|KGN64202.1\|	1.1e-75	95.09	hypothetical protein Csa_1G043055 [Cucumis sativus]	[more]
gi\|225457458\|ref\|XP_002265041.1\|	1.4e-70	92.99	PREDICTED: transcription factor BTF3 homolog 4 [Vitis vinifera]	[more]
gi\|1009133550\|ref\|XP_015883963.1\|	6.5e-68	86.59	PREDICTED: transcription factor BTF3 homolog 4-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002715	Nas_poly-pep-assoc_cplx_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh18G000920.1	CmaCh18G000920.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002715	Nascent polypeptide-associated complex NAC domain	PFAM	PF01849	NAC	coord: 36..91 score: 2.9
IPR002715	Nascent polypeptide-associated complex NAC domain	SMART	SM01407	NAC_2	coord: 36..91 score: 2.4
IPR002715	Nascent polypeptide-associated complex NAC domain	PROFILE	PS51151	NAC_AB	coord: 33..97 score: 1
None	No IPR available	PANTHER	PTHR10351	TRANSCRIPTION FACTOR BTF3	coord: 1..159 score: 3.4E
None	No IPR available	PANTHER	PTHR10351:SF50	SUBFAMILY NOT NAMED	coord: 1..159 score: 3.4E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh18G000920	Cucsa.122190	Cucumber (Gy14) v1	cgycmaB0318
CmaCh18G000920	Cla008391	Watermelon (97103) v1	cmawmB378
CmaCh18G000920	MELO3C002159	Melon (DHL92) v3.5.1	cmameB365
CmaCh18G000920	ClCG01G014900	Watermelon (Charleston Gray)	cmawcgB346
CmaCh18G000920	CmoCh18G000690	Cucurbita moschata (Rifu)	cmacmoB408
CmaCh18G000920	CmoCh13G010020	Cucurbita moschata (Rifu)	cmacmoB399
CmaCh18G000920	Lsi02G002620	Bottle gourd (USVL1VR-Ls)	cmalsiB370
CmaCh18G000920	Cp4.1LG09g11010	Cucurbita pepo (Zucchini)	cmacpeB416
CmaCh18G000920	Cp4.1LG20g01770	Cucurbita pepo (Zucchini)	cmacpeB439
CmaCh18G000920	MELO3C002159.2	Melon (DHL92) v3.6.1	cmamedB424
CmaCh18G000920	Cla97C01G013930	Watermelon (97103) v2	cmawmbB399
CmaCh18G000920	Bhi08G001103	Wax gourd	cmawgoB0520
CmaCh18G000920	CsGy1G007320	Cucumber (Gy14) v2	cgybcmaB085
CmaCh18G000920	Carg04871	Silver-seed gourd	carcmaB0541
CmaCh18G000920	Carg06647	Silver-seed gourd	carcmaB0692

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh18G000920	CmaCh13G009680	Cucurbita maxima (Rimu)	cmacmaB217

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh18G000920	Wild cucumber (PI 183967)	cmacpiB394
CmaCh18G000920	Cucumber (Chinese Long) v2	cmacuB390
CmaCh18G000920	Watermelon (Charleston Gray)	cmawcgB363
CmaCh18G000920	Watermelon (97103) v1	cmawmB396
CmaCh18G000920	Cucumber (Chinese Long) v3	cmacucB0464