Carg04871 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg04871
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Nascent polypeptide-associated complex subunit beta
Location	Cucurbita_argyrosperma_scaffold_028 : 1409431 .. 1413646 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCAGAGTGAAGCTATCTTCGTCTGCTTCAACGAAGCTCTCGACTTAAAAATCTCAAATAATCTTCAAGGTAACTCTTCCTTCCAATTTAGCTTCATTTCTCTTCGCTTTCTCGATTCTCCGTGGTTCTTACTATTTTCGTATAGCTCGGCTTTCTCTTTCACGATGATTTTCTTTTGCCGAGGGCTCTACTGTGGCGTAGTTTCATGTTCTAGCTTTGGAGCCGGATTTTGTTTTTACTTCTTTTGAGGTGTTCATCGATTTGATATGTATTTATCTTGAAACTGATCGTCATTGTTTTCTCTTCTCCTTTTTTTTGTATGTTAAACATGCTATGTTTTCGGATTTCTTGATAGCTTCACAGATCGTGATTAAATCTCTTCTATCTATAATTGCGTTCTTTGATTGTAAGCTCAGAAGTTAACGAAAGAAAAGCCTAGGTTAGACGATTTAGTGGAGTCGTAGGTACTGTACTGAGCAGGAGCTTACTTTCACGAATATTTTACTTTTTCTGAAAACTTTGGCGGCTTCTCTTAGAGAATCTCACTCTTATATTCTCTTCGACGATCATGCTAAGATGATGAATGGATAATTTGTTGCTGTTGAAATAACTTTTTGGATAATCTTAAGCCTCGATAATGTTTTTTAGTGTTGCTTTTCTTTCAGAGATTGTAATTGTTAAATGATCTTTCGGATATGGTTTTCTATTTGATCTAATAGTTATTAAAAATGTGGACAAGATCCGTGTATGCGTTTATCTGCTTTACCTCTCTTTTCTTCGTGGACGCATCTATTCTTCTTTATTGCTCTAATAATACAAGTTCGAATCCTTAATCACGTACCAAGACTTCATTTCTCACAACATTTATCCTTCTCGTTTCCTATTAAAAACGAAAAACTCATAAATCTTATCCTTCTCGTTTCCTATTAAAAACGAAAAACTCATAAATCTTATTCTTCTCGTTTCATATTAAAAACGAAAAACTCATAAATCTTATCCTTCTCGTTTCATATTAAAAACAAAAAGACTCATAAATCTCATCTTTGTTCTTATGTTGTGCAGATGGATCATGCGAAGCTCCAGAAGATGGCTGGTGCAGTGCGCACTGGTGGAAAAGGTAGCGTGAGAAGGTTGGTTGCCTTTTTATCTATTGAAAGTTCAAACTGTGTAAAAAGAGTCAGTTGTTTATTGCTTGATTTATTTAATAAGAAATCATAAATTAATTCAACCGGAAAATGGAACTCTTACAAATCTTACCTAGTTGTTCTTGATTATAGTTTATTTGTTGGTAGATAATTTAATTGAACCATAATATCATCCAAATAAGGTGGTTTGGTCTGAGAGGTTAAGTTAACGCAACATCTAGTACTCTGTTCCCACGTCCACTTCTGCTTTCCTCAGTTCTCTTATCCATCGTGCTATTAATTTTGATTGGCTTCTTTCTTATAATCAGAAGCGTTTTCTCTAGCTAGCAGTTAATTTTGAATTTCTGATTTGCAGTTCATGCTTTACGATTGACGAAAAGCGCTCGCACACGCACACATTATTATAATATTCAGTTGACTAATGGATGAATAAACAAACATAAATTCCATGCTTGTTTGAGTATTGCATCTTTCAGTTACGCAAGTTGTCATCTCTCGACATTTTCTCATGCTTCCTTAACAAAATGACGTTGATAATTTTCTTTATGTATTTTGTCAATTAAAGGAAGAAGAAAGCTGTTCACAAGACAACTACCACAGATGATAAACGGCTTCAAAGTACCTTGAAGAGAATAGGAGTTAATGCTATTCCTGCAATTGAGGAAGTTAACATCTTCAAGGATGATGTAGTTATTCAGTTTGTTAATCCGAAAGGTAAAGCCACTTAACTATCCTTGACTTCTTACCATCGATATCTTGATACGTAACTCATATTTTGCTGTTTCTCGTTCTCTATTTCAGTTCAGGCTTCTATTGCCGCAAACACATGGGTTGTTAGTGGTTCTCCTCAAACGAAAAGTACGTCTCTTACCACCTTTTGAATATAATGGAACATACAACTGACCTTGTGTTCTAATTTGTAGTTATCTGAAACTGAAATAATTTTTTTCATTCAAATTTGGTCGTATAATTTTTAAAACACAAAAGAATAGTCCTAAAAATGAAAACGACATAGTAGAGTTGTCTGCAGACTATGCTGTTTTTAAGGTAACTCTTAGTTTCCAATTGCGGGATCAGTAGTGGTTTTTATTTCAATTACTACGTTGTGTTCAAACCGTTTTTAAATCAGTGATGAATATTTTTTTTTATTGAAGTATTTTTAAGGTGCCGTTTGGAAATGCCATAAAAAAACCGCTCAATTTTTTATTACAAAATTTTATTCTTTAATGAGGAAAACCAATCTGTCCAGTGAAATATTTAAAACTGTTTTTAAAATGAGTTATTCTTACTTCTTGGAGTACCTGTTAATTGTGTACGAACCTTCAAGTGTTTTTAGGAATTAAATATGATGTGGATCACAAAAAAAGTAGCTATAAGTGCACACTGCAACTTACGTCCAACCGTTTGAAAGTAGTTTTTTCCGGCATAGTTCCATCTAACACTTTAAAAATTTCCAGATTGTTCTTCGTAGAAAAATTCAAACTACTCCCCGTTTTTTTTTTTTTTTTTTTTTAAGAAGTGCTGTTGCCCTGTTATAATGTGGCAAAATAAATTTTACCAAGGGTTCTCAGGGATTAGGATTACGTTTTCAAAGATTTAATGCAAAACAACATGCTGCCCTTGGCTTGGAATTTGAAATACGTCCAAATTCGAATGCTTCGTGTCATTGTGTCCAGCATAGGATTATCTCTGAGACTAGATCGACTTTTTTAATGCTAAAAAGTGTTTTTAAACGCCTAAAAGAGTCCAAATCCAAACAAGTTGGAGTTTCATAATATGTTATTAAATAAAGATTTTGGCTAAAAGCTATCGTTTTAAATCGGGGGCAAATAGTTTCGTTTGATACTGAAAAGTCTGGGATAATAGTTCACCTTTGCTAAATCGTGCCATTATTTTTTATATTTATACTTGGATTGGAATATTGACAATTGTGACTTCTGATCTGATGACTCTTACTTTAAATTATGCCATTACTTTTTATATTTACTTCAATGAGACCTTGTTTATTTCTGGAATAGATGTGTTCTTACCGCAAGCAAGTCTTGGGATAAAAAATTCTGTAGCATCTTGCTTATGCAAAAGATGTTACTCGAGGTCCCTCGCTTTCACTGGCACCTTTTGTTTATTTCTGATTGTGAAGCCTTTCTATTAACACTGCGCAGGATGCTTGTGATCTTTAGCCATCTCTTGTTAATATCTATCACGGTTTAAACTCATCATGTATTACTAATGATGCCTCTCTAATATTTTGATTTCTTCTCAGAATTGCAGGATATTCTCCCTGGAATTATTAACCAATTGGGTAAGTACTACGCTAGGATTCTGGTGTTTCCTGCGGAGTTGCAATTTTAACTACGGCGCTAAGAATACGACTTGTTTGCATGTAAATATTTCCAGGGCCCGATAATTTGGACAATCTGAGGAAGTTGGCAGAGCAGTTCCAGAAGCAAGCACCTGGAGAAGCCGCAGCAGCAGCCAATGCAGAGGATGATGATGACGATGTACCCGACCTTGTCGAAGGACAAACCTTCGAAGCTGCTGCAGAAGAGAGTAAAGCCTCCTAGATAGGAGCTCGCTCTCAGATGATTTTATTTAGCCTTTTTCTTTTTACATATTTTTAATGTTGGGAAGAGTTCATTTTTCTCCTTGTATTTCTTTTTGTTAATCTTTGTTGCCCATGGCATTTCTACTCACCCCTGCCCCCATGTAACCCCCCGATGCATGAATTTTCGGTTGCTGCCCCTTTCAACCGCCTTAATTCATGTGGAGAATGCTTTTCTTATTTAGGTGCGGAATTAATGGCTACCCCCCCCGCCTCCTTACCTAAAGAAAAAAATTTGGGGATTTAAACTTGAGCCAACTTTGTATTCGAATATGTTAAGGTGTATGCTTATTAAATAGTCCTTTACCCTCTTTTTTTCTCTTCTTGTACTGTTGACTTGTTAAGTTTTAGGAATACTAGATGTATTATTTAGATTTTGATGAATTCCTATGGCCAAGAAATTAAAGTGTATTGAAACATGAATGTCATTGCGTGGTGATGTTGAGTATGTGATTTTGTTATTTTTTCC

mRNA sequence

CCCAGAGTGAAGCTATCTTCGTCTGCTTCAACGAAGCTCTCGACTTAAAAATCTCAAATAATCTTCAAGGTAACTCTTCCTTCCAATTTAGCTTCATTTCTCTTCGCTTTCTCGATTCTCCGTGGTTCTTACTATTTTCGTATAGCTCGGCTTTCTCTTTCACGATGATTTTCTTTTGCCGAGGGCTCTACTGTGGCGTAGTTTCATGTTCTAGCTTTGGAGCCGGATTTTGTTTTTACTTCTTTTGAGATGGATCATGCGAAGCTCCAGAAGATGGCTGGTGCAGTGCGCACTGGTGGAAAAGGTAGCGTGAGAAGGAAGAAGAAAGCTGTTCACAAGACAACTACCACAGATGATAAACGGCTTCAAAGTACCTTGAAGAGAATAGGAGTTAATGCTATTCCTGCAATTGAGGAAGTTAACATCTTCAAGGATGATGTAGTTATTCAGTTTGTTAATCCGAAAGTTCAGGCTTCTATTGCCGCAAACACATGGGTTGTTAGTGGTTCTCCTCAAACGAAAAAATTGCAGGATATTCTCCCTGGAATTATTAACCAATTGGGGCCCGATAATTTGGACAATCTGAGGAAGTTGGCAGAGCAGTTCCAGAAGCAAGCACCTGGAGAAGCCGCAGCAGCAGCCAATGCAGAGGATGATGATGACGATGTACCCGACCTTGTCGAAGGACAAACCTTCGAAGCTGCTGCAGAAGAGAGTAAAGCCTCCTAGATAGGAGCTCGCTCTCAGATGATTTTATTTAGCCTTTTTCTTTTTACATATTTTTAATGTTGGGAAGAGTTCATTTTTCTCCTTGTATTTCTTTTTGTTAATCTTTGTTGCCCATGGCATTTCTACTCACCCCTGCCCCCATGTAACCCCCCGATGCATGAATTTTCGGTTGCTGCCCCTTTCAACCGCCTTAATTCATGTGGAGAATGCTTTTCTTATTTAGGTGCGGAATTAATGGCTACCCCCCCCGCCTCCTTACCTAAAGAAAAAAATTTGGGGATTTAAACTTGAGCCAACTTTGTATTCGAATATGTTAAGGTGTATGCTTATTAAATAGTCCTTTACCCTCTTTTTTTCTCTTCTTGTACTGTTGACTTGTTAAGTTTTAGGAATACTAGATGTATTATTTAGATTTTGATGAATTCCTATGGCCAAGAAATTAAAGTGTATTGAAACATGAATGTCATTGCGTGGTGATGTTGAGTATGTGATTTTGTTATTTTTTCC

Coding sequence (CDS)

ATGGATCATGCGAAGCTCCAGAAGATGGCTGGTGCAGTGCGCACTGGTGGAAAAGGTAGCGTGAGAAGGAAGAAGAAAGCTGTTCACAAGACAACTACCACAGATGATAAACGGCTTCAAAGTACCTTGAAGAGAATAGGAGTTAATGCTATTCCTGCAATTGAGGAAGTTAACATCTTCAAGGATGATGTAGTTATTCAGTTTGTTAATCCGAAAGTTCAGGCTTCTATTGCCGCAAACACATGGGTTGTTAGTGGTTCTCCTCAAACGAAAAAATTGCAGGATATTCTCCCTGGAATTATTAACCAATTGGGGCCCGATAATTTGGACAATCTGAGGAAGTTGGCAGAGCAGTTCCAGAAGCAAGCACCTGGAGAAGCCGCAGCAGCAGCCAATGCAGAGGATGATGATGACGATGTACCCGACCTTGTCGAAGGACAAACCTTCGAAGCTGCTGCAGAAGAGAGTAAAGCCTCCTAG

Protein sequence

MDHAKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPGEAAAAANAEDDDDDVPDLVEGQTFEAAAEESKAS

Homology

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BLAST of Carg04871 vs. NCBI nr
Match: XP_023001813.1 (nascent polypeptide-associated complex subunit beta-like [Cucurbita maxima])

HSP 1 Score: 248.4 bits (633), Expect = 1.6e-62
Identity = 158/159 (99.37%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MDHAKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDHAKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDHAKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDD+VIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 61  KDDIVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 121 KQAPGEXXXXXXXXXXXXXVPDLVEGQTFEAAAEESKAS 160
           KQAPGEXXXXXXXXXXXXXVPDLVEGQTFEAAAEESKAS
Sbjct: 121 KQAPGEXXXXXXXXXXXXXVPDLVEGQTFEAAAEESKAS 159

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BLAST of Carg04871 vs. NCBI nr
Match: XP_022923905.1 (nascent polypeptide-associated complex subunit beta-like [Cucurbita moschata])

HSP 1 Score: 244.2 bits (622), Expect = 3.0e-61
Identity = 159/160 (99.38%), Postives = 159/160 (99.38%), Query Frame = 0


Query: 1   MDHAKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDHAKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDHAKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 121 KQAPGE-XXXXXXXXXXXXXVPDLVEGQTFEAAAEESKAS 160
           KQAPGE XXXXXXXXXXXXXVPDLVEGQTFEAAAEESKAS
Sbjct: 121 KQAPGEXXXXXXXXXXXXXXVPDLVEGQTFEAAAEESKAS 160

[Close]

BLAST of Carg04871 vs. NCBI nr
Match: XP_023519330.1 (nascent polypeptide-associated complex subunit beta-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 238.0 bits (606), Expect = 2.1e-59
Identity = 157/165 (95.15%), Postives = 157/165 (95.15%), Query Frame = 0


Query: 1   MDHAKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDHAKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDHAKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 121 KQAPG------EXXXXXXXXXXXXXVPDLVEGQTFEAAAEESKAS 160
           KQAPG       XXXXXXXXXXXXX PDLVEGQTFEAAAEESKAS
Sbjct: 121 KQAPGXXXXXXXXXXXXXXXXXXXXXPDLVEGQTFEAAAEESKAS 165

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BLAST of Carg04871 vs. NCBI nr
Match: XP_022137634.1 (nascent polypeptide-associated complex subunit beta-like [Momordica charantia])

HSP 1 Score: 226.1 bits (575), Expect = 8.4e-56
Identity = 147/159 (92.45%), Postives = 151/159 (94.97%), Query Frame = 0


Query: 1   MDHAKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDH KL+KMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDHTKLKKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQF+NPKVQASIAANTWVVSG+PQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 121 KQAPGEXXXXXXXXXXXXXVPDLVEGQTFEAAAEESKAS 160
           K     XXXXXXXXXXXXXVP+LVEGQTFEAAAEE  AS
Sbjct: 121 KXXXXXXXXXXXXXXXXXXVPELVEGQTFEAAAEEPHAS 159

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BLAST of Carg04871 vs. NCBI nr
Match: XP_004137521.1 (PREDICTED: transcription factor BTF3 homolog 4-like [Cucumis sativus])

HSP 1 Score: 224.6 bits (571), Expect = 2.5e-55
Identity = 150/163 (92.02%), Postives = 151/163 (92.64%), Query Frame = 0


Query: 1   MDHAKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDH KLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDHTKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQF NPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 61  KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 121 K----QAPGEXXXXXXXXXXXXXVPDLVEGQTFEAAAEESKAS 160
           K         XXXXXXXXXXXXXVPDLVEGQTFEAAAEE +AS
Sbjct: 121 KXXXXXXXXXXXXXXXXXXXXXXVPDLVEGQTFEAAAEEKQAS 163

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BLAST of Carg04871 vs. TAIR10
Match: AT1G73230.1 (Nascent polypeptide-associated complex NAC)

HSP 1 Score: 203.8 bits (517), Expect = 8.1e-53
Identity = 128/157 (81.53%), Postives = 138/157 (87.90%), Query Frame = 0


Query: 1   MDHAKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+  KL KMA  VRTGGKG+VRRXXXXXXXXXXXXXKRLQSTLKR+GVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRXXXXXXXXXXXXXKRLQSTLKRVGVNSIPAIEEVNIF 60

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQF+NPKVQASIAANTWVVSG+PQTKKLQDILP II+QLGPDNLDNL+KLAEQFQ
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGTPQTKKLQDILPQIISQLGPDNLDNLKKLAEQFQ 120

Query: 121 KQAP--GEXXXXXXXXXXXXXVPDLVEGQTFEAAAEE 156
           KQAP  G+       XXXXXXVPDLV G+TFE  A E
Sbjct: 121 KQAPGAGDVPATIQEXXXXXXVPDLVVGETFETPATE 157

[Close]

BLAST of Carg04871 vs. TAIR10
Match: AT1G17880.1 (basic transcription factor 3)

HSP 1 Score: 201.4 bits (511), Expect = 4.0e-52
Identity = 115/157 (73.25%), Postives = 124/157 (78.98%), Query Frame = 0


Query: 1   MDHAKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+  KL KMA  VRTGGKG+VRR             KRLQSTLKRIGVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTNTTDDKRLQSTLKRIGVNSIPAIEEVNIF 60

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQF+NPKVQASIAANTWVVSGSPQTKKLQDILP II+QLGPDN+DNL+KLAEQFQ
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPQIISQLGPDNMDNLKKLAEQFQ 120

Query: 121 KQAPGE--XXXXXXXXXXXXXVPDLVEGQTFEAAAEE 156
           KQA GE          XXXX VP+LV G+TFE AAEE
Sbjct: 121 KQASGEGNAASATIQEXXXXDVPELV-GETFETAAEE 156

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BLAST of Carg04871 vs. Swiss-Prot
Match: sp|Q9CAT7|BTF3L_ARATH (Nascent polypeptide-associated complex subunit beta OS=Arabidopsis thaliana OX=3702 GN=At1g73230 PE=2 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.5e-51
Identity = 128/157 (81.53%), Postives = 138/157 (87.90%), Query Frame = 0


Query: 1   MDHAKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+  KL KMA  VRTGGKG+VRRXXXXXXXXXXXXXKRLQSTLKR+GVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRXXXXXXXXXXXXXKRLQSTLKRVGVNSIPAIEEVNIF 60

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQF+NPKVQASIAANTWVVSG+PQTKKLQDILP II+QLGPDNLDNL+KLAEQFQ
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGTPQTKKLQDILPQIISQLGPDNLDNLKKLAEQFQ 120

Query: 121 KQAP--GEXXXXXXXXXXXXXVPDLVEGQTFEAAAEE 156
           KQAP  G+       XXXXXXVPDLV G+TFE  A E
Sbjct: 121 KQAPGAGDVPATIQEXXXXXXVPDLVVGETFETPATE 157

[Close]

BLAST of Carg04871 vs. Swiss-Prot
Match: sp|Q9SMW7|BTF3_ARATH (Basic transcription factor 3 OS=Arabidopsis thaliana OX=3702 GN=BTF3 PE=1 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 7.3e-51
Identity = 115/157 (73.25%), Postives = 124/157 (78.98%), Query Frame = 0


Query: 1   MDHAKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+  KL KMA  VRTGGKG+VRR             KRLQSTLKRIGVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTNTTDDKRLQSTLKRIGVNSIPAIEEVNIF 60

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQF+NPKVQASIAANTWVVSGSPQTKKLQDILP II+QLGPDN+DNL+KLAEQFQ
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPQIISQLGPDNMDNLKKLAEQFQ 120

Query: 121 KQAPGE--XXXXXXXXXXXXXVPDLVEGQTFEAAAEE 156
           KQA GE          XXXX VP+LV G+TFE AAEE
Sbjct: 121 KQASGEGNAASATIQEXXXXDVPELV-GETFETAAEE 156

[Close]

BLAST of Carg04871 vs. Swiss-Prot
Match: sp|A2R091|NACB_ASPNC (Nascent polypeptide-associated complex subunit beta OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=egd1 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 4.6e-29
Identity = 70/155 (45.16%), Postives = 97/155 (62.58%), Query Frame = 0


Query: 1   MDHAKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60
           MD AKL +M  +VR GGKG+ RR             K+LQ+TLK++ V  I AIEEVN+F
Sbjct: 1   MDQAKLARMQQSVRIGGKGTPRRKVKKVHKSSGADDKKLQATLKKMNVQPIQAIEEVNMF 60

Query: 61  KDD-VVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF 120
           K+D  VI F  PKV AS+ +NT+ + G+ + K+L +++PGI+NQLGPD+L +LRKLAE +
Sbjct: 61  KEDGNVIHFGAPKVHASVPSNTFALYGNGEEKELTELVPGILNQLGPDSLASLRKLAESY 120

Query: 121 QKQAPGEXXXXXXXXXXXXXVPDLVEGQTFEAAAE 155
           Q     +             +PDLVEG+ FE+  E
Sbjct: 121 QNMQKNQAGADGKKDDEEDDIPDLVEGENFESNVE 155

[Close]

BLAST of Carg04871 vs. Swiss-Prot
Match: sp|Q0CGL5|NACB_ASPTN (Nascent polypeptide-associated complex subunit beta OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=egd1 PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.3e-28
Identity = 77/167 (46.11%), Postives = 105/167 (62.87%), Query Frame = 0


Query: 1   MDHAKLQKMAGAVRTG------------GKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGV 60
           MD AKL +M  +VR G            GKG+ RR             K+LQ+TLK++ V
Sbjct: 1   MDQAKLARMQASVRIGNPPSGPRANRNRGKGTPRRKVKKVHKSSGADDKKLQATLKKMNV 60

Query: 61  NAIPAIEEVNIFKDD-VVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPD 120
             IPA+EEVN+FK+D  VI F NP+V AS+ +NT+ + G+ + K+L +++PGI+NQLGPD
Sbjct: 61  QPIPAVEEVNMFKEDGNVIHFGNPRVHASVPSNTFALYGNGEEKELTELVPGILNQLGPD 120

Query: 121 NLDNLRKLAEQFQKQAPGEXXXXXXXXXXXXXVPDLVEGQTFEAAAE 155
           +L +LRKLAE +Q     +      XXXXXX +PDLVEGQ FE+  E
Sbjct: 121 SLASLRKLAESYQNMQKNQAGAEGKXXXXXXDIPDLVEGQDFESKVE 167

[Close]

BLAST of Carg04871 vs. Swiss-Prot
Match: sp|Q6PC91|BT3L4_DANRE (Transcription factor BTF3 homolog 4 OS=Danio rerio OX=7955 GN=btf3l4 PE=2 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 3.3e-27
Identity = 70/147 (47.62%), Postives = 93/147 (63.27%), Query Frame = 0


Query: 1   MDHAKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+  KL K+   VR GGKG+ RR             K+LQS+LK++ VN I  IEEVN+ 
Sbjct: 1   MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLVVNNIAGIEEVNMI 60

Query: 61  KDD-VVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF 120
           KDD  VI F NPKVQAS++ANT+ ++G  +TK+L ++LPGI++QLG D+L +LRKLAEQF
Sbjct: 61  KDDGTVIHFNNPKVQASLSANTFAITGHAETKQLTEMLPGILSQLGADSLTSLRKLAEQF 120

Query: 121 QKQA-PGEXXXXXXXXXXXXXVPDLVE 146
            +Q    +             VPDLVE
Sbjct: 121 PRQVLDNKAPKAEDIDEEDDDVPDLVE 147

[Close]

BLAST of Carg04871 vs. TrEMBL
Match: tr|A0A0A0LTU8|A0A0A0LTU8_CUCSA (Nascent polypeptide-associated complex subunit beta OS=Cucumis sativus OX=3659 GN=Csa_1G043055 PE=3 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 1.6e-55
Identity = 150/163 (92.02%), Postives = 151/163 (92.64%), Query Frame = 0


Query: 1   MDHAKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDH KLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 77  MDHTKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 136

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQF NPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 137 KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 196

Query: 121 K----QAPGEXXXXXXXXXXXXXVPDLVEGQTFEAAAEESKAS 160
           K         XXXXXXXXXXXXXVPDLVEGQTFEAAAEE +AS
Sbjct: 197 KXXXXXXXXXXXXXXXXXXXXXXVPDLVEGQTFEAAAEEKQAS 239

[Close]

BLAST of Carg04871 vs. TrEMBL
Match: tr|A0A1S3CT31|A0A1S3CT31_CUCME (Nascent polypeptide-associated complex subunit beta OS=Cucumis melo OX=3656 GN=LOC103504634 PE=3 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 2.8e-55
Identity = 150/165 (90.91%), Postives = 151/165 (91.52%), Query Frame = 0


Query: 1   MDHAKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDH KLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDHTKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQF NPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 61  KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 121 K------QAPGEXXXXXXXXXXXXXVPDLVEGQTFEAAAEESKAS 160
           K           XXXXXXXXXXXXXVPDLVEGQTFEAAAEE +AS
Sbjct: 121 KXXXXXXXXXXXXXXXXXXXXXXXXVPDLVEGQTFEAAAEEKQAS 165

[Close]

BLAST of Carg04871 vs. TrEMBL
Match: tr|A0A1S4DVT8|A0A1S4DVT8_CUCME (Nascent polypeptide-associated complex subunit beta OS=Cucumis melo OX=3656 GN=LOC103504634 PE=3 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 2.8e-55
Identity = 150/165 (90.91%), Postives = 151/165 (91.52%), Query Frame = 0


Query: 1   MDHAKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDH KLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 4   MDHTKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 63

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQF NPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 64  KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 123

Query: 121 K------QAPGEXXXXXXXXXXXXXVPDLVEGQTFEAAAEESKAS 160
           K           XXXXXXXXXXXXXVPDLVEGQTFEAAAEE +AS
Sbjct: 124 KXXXXXXXXXXXXXXXXXXXXXXXXVPDLVEGQTFEAAAEEKQAS 168

[Close]

BLAST of Carg04871 vs. TrEMBL
Match: tr|A0A165WBL6|A0A165WBL6_DAUCA (Nascent polypeptide-associated complex subunit beta OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_015290 PE=3 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.4e-54
Identity = 121/158 (76.58%), Postives = 126/158 (79.75%), Query Frame = 0


Query: 1   MDHAKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+  KL KMAGAVRTGGKGSVRR             KRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 8   MNREKLMKMAGAVRTGGKGSVRRKKKAIHKTATTDDKRLQSTLKRIGVNAIPAIEEVNIF 67

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQFV+PKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 68  KDDVVIQFVSPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 127

Query: 121 KQAPGEXXXXXXXXXXXXXVPDLVEGQTFEAAAEESKA 159
           KQAPG              VP+LV G+TFEAAAEE+ A
Sbjct: 128 KQAPG---AAAVQGDDDDEVPELVPGETFEAAAEETPA 162

[Close]

BLAST of Carg04871 vs. TrEMBL
Match: tr|A0A165WBJ6|A0A165WBJ6_DAUCA (Nascent polypeptide-associated complex subunit beta OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_015291 PE=3 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.4e-54
Identity = 121/161 (75.16%), Postives = 127/161 (78.88%), Query Frame = 0


Query: 1   MDHAKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+  KL KMAGAVRTGGKGSVRR             KRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MNREKLMKMAGAVRTGGKGSVRRKKKAIHKTATTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFVNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQFV+PKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 61  KDDVVIQFVSPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 121 KQAPG---EXXXXXXXXXXXXXVPDLVEGQTFEAAAEESKA 159
           KQAPG   +             VP+LV G+TFEAAAEE+ A
Sbjct: 121 KQAPGAGADAGAAAVQGDDDDEVPELVPGETFEAAAEETPA 161

The following BLAST results are available for this feature:

BLAST of Carg04871 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023001813.1	1.6e-62	99.37	nascent polypeptide-associated complex subunit beta-like [Cucurbita maxima]	[more]
XP_022923905.1	3.0e-61	99.38	nascent polypeptide-associated complex subunit beta-like [Cucurbita moschata]	[more]
XP_023519330.1	2.1e-59	95.15	nascent polypeptide-associated complex subunit beta-like [Cucurbita pepo subsp. ...	[more]
XP_022137634.1	8.4e-56	92.45	nascent polypeptide-associated complex subunit beta-like [Momordica charantia]	[more]
XP_004137521.1	2.5e-55	92.02	PREDICTED: transcription factor BTF3 homolog 4-like [Cucumis sativus]	[more]

BLAST of Carg04871 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G73230.1	8.1e-53	81.53	Nascent polypeptide-associated complex NAC	[more]
AT1G17880.1	4.0e-52	73.25	basic transcription factor 3	[more]

BLAST of Carg04871 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9CAT7\|BTF3L_ARATH	1.5e-51	81.53	Nascent polypeptide-associated complex subunit beta OS=Arabidopsis thaliana OX=3...	[more]
sp\|Q9SMW7\|BTF3_ARATH	7.3e-51	73.25	Basic transcription factor 3 OS=Arabidopsis thaliana OX=3702 GN=BTF3 PE=1 SV=1	[more]
sp\|A2R091\|NACB_ASPNC	4.6e-29	45.16	Nascent polypeptide-associated complex subunit beta OS=Aspergillus niger (strain...	[more]
sp\|Q0CGL5\|NACB_ASPTN	2.3e-28	46.11	Nascent polypeptide-associated complex subunit beta OS=Aspergillus terreus (stra...	[more]
sp\|Q6PC91\|BT3L4_DANRE	3.3e-27	47.62	Transcription factor BTF3 homolog 4 OS=Danio rerio OX=7955 GN=btf3l4 PE=2 SV=1	[more]

BLAST of Carg04871 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LTU8\|A0A0A0LTU8_CUCSA	1.6e-55	92.02	Nascent polypeptide-associated complex subunit beta OS=Cucumis sativus OX=3659 G...	[more]
tr\|A0A1S3CT31\|A0A1S3CT31_CUCME	2.8e-55	90.91	Nascent polypeptide-associated complex subunit beta OS=Cucumis melo OX=3656 GN=L...	[more]
tr\|A0A1S4DVT8\|A0A1S4DVT8_CUCME	2.8e-55	90.91	Nascent polypeptide-associated complex subunit beta OS=Cucumis melo OX=3656 GN=L...	[more]
tr\|A0A165WBL6\|A0A165WBL6_DAUCA	1.4e-54	76.58	Nascent polypeptide-associated complex subunit beta OS=Daucus carota subsp. sati...	[more]
tr\|A0A165WBJ6\|A0A165WBJ6_DAUCA	1.4e-54	75.16	Nascent polypeptide-associated complex subunit beta OS=Daucus carota subsp. sati...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR038187	NAC_A/B_dom_sf
IPR002715	Nas_poly-pep-assoc_cplx_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg04871-RA	Carg04871-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002715	Nascent polypeptide-associated complex NAC domain	SMART	SM01407	NAC_2	coord: 36..91 e-value: 1.1E-21 score: 88.1
IPR002715	Nascent polypeptide-associated complex NAC domain	PFAM	PF01849	NAC	coord: 36..91 e-value: 8.7E-20 score: 70.4
IPR002715	Nascent polypeptide-associated complex NAC domain	PROSITE	PS51151	NAC_AB	coord: 33..97 score: 15.864
IPR038187	NAC A/B domain superfamily	GENE3D	G3DSA:2.20.70.30		coord: 48..104 e-value: 1.9E-27 score: 96.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 121..159
None	No IPR available	PANTHER	PTHR10351	TRANSCRIPTION FACTOR BTF3	coord: 1..157
None	No IPR available	PANTHER	PTHR10351:SF47	SUBFAMILY NOT NAMED	coord: 1..157

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg04871	Cla008391	Watermelon (97103) v1	carwmB0385
Carg04871	MELO3C002159	Melon (DHL92) v3.5.1	carmeB0393
Carg04871	ClCG01G014900	Watermelon (Charleston Gray)	carwcgB0380
Carg04871	Cucsa.122190	Cucumber (Gy14) v1	carcgyB0452
Carg04871	CmaCh18G000920	Cucurbita maxima (Rimu)	carcmaB0541
Carg04871	CmaCh13G009680	Cucurbita maxima (Rimu)	carcmaB0540
Carg04871	CmoCh13G010020	Cucurbita moschata (Rifu)	carcmoB0526
Carg04871	CmoCh18G000690	Cucurbita moschata (Rifu)	carcmoB0527
Carg04871	Lsi02G002620	Bottle gourd (USVL1VR-Ls)	carlsiB353
Carg04871	Cp4.1LG09g11010	Cucurbita pepo (Zucchini)	carcpeB0539
Carg04871	Cp4.1LG20g01770	Cucurbita pepo (Zucchini)	carcpeB0544
Carg04871	CsGy1G007320	Cucumber (Gy14) v2	carcgybB0393
Carg04871	MELO3C002159.2	Melon (DHL92) v3.6.1	carmedB0397
Carg04871	Cla97C01G013930	Watermelon (97103) v2	carwmbB0406
Carg04871	Bhi08G001103	Wax gourd	carwgoB0473

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg04871	Carg06647	Silver-seed gourd	carcarB411

The following block(s) are covering this gene:


Gene	Organism	Block
Carg04871	Wild cucumber (PI 183967)	carcpiB0418
Carg04871	Cucumber (Chinese Long) v2	carcuB0415
Carg04871	Cucumber (Chinese Long) v3	carcucB0418