MELO3C002159.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C002159.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Nascent polypeptide-associated complex subunit beta
Location	chr12 : 25909764 .. 25913967 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCTTCAAGGTAGAACTCTTCCTTCCATTTTCCCTTCACTTCTCATCGTTATCTCAATCCTCTCTTGTTCTTTCTATTTTTTGATTGCTCTTCTTCATCTTCGACGATGAATTTCTTCTGCTGAGGGTTCTACTGTGGTGTATTTTTATTTTATTAGCCGGATTTTGTTTTTGCTTCTTTTGAGGTGTTCGCGTTCATCGATTTGATATGTATTTTTGTCTTTGAAACTTCTCGTCATTGATTTTCGTCTTTATATGTTAAACTTGTTTGTGTTATTGAATTTCTTGATTACTTTACAGATCGTGTTTATATCTATACTATCTGTAATTGCGTTCTTCGATTGTGAGTTTAGAAGTGAAGTAAAGAACAGCTTAGGTTAGAGGATTTAGTGTAGCCGTAGTTACTGTACCGAGCAGGAGCTTACATTACATGTACATTACATTTCTTGTATTTTCTCAGCGATTGTGATAACATGATGAACGGATAAATTTATACCTTGATAATGTTCAAGGTAGACCTCTTCCTTCCATTTTCGCTTCACTTCTCATCGTTATCTCATTCTTCTCTTGTTCTTGCTATTCTTCATCTTCGACGATGAACTTCTTCTGCCGAGGGTTCTACTGTGGCGTATATTCATTTTCTCAACGGATTCTGTTTTTACTTCTGTTGAGGTGTTCGTGTTCATCGTTATTCATTTTCTCGTTATTCATTTTCATTTTTATAGGCTAAACTTGTTTTTGTTATTGGATTTCTTGATTATTTTACAGAACGTGTTTAAATCTCTACTGGTTTTTAATTGCGTTTTTCGATTGTGAGTTCAGAAGTGAAGGAAAGAACAGCTTAGGCTATAGGATTTTGTGGAGCCGAAGTTCCTGTACAGAGGAGGAGCTTACATTTCTTGAACATTACATTTCTTGTATTTTTCTTGAAGATTATGATAACATGATGAACGGATAATTTTATACTATTGAAATTAATTTTTTGGATAAGCTAAGGCTTGATAACGTACTTTAGTGCTGTTTTCCTTTCAGATACTGCAACTGTTAAATGAATTTTCGGATGAGATTTCTGTTTCATTTATAGTTTTTAGAAAATGTGACGACGCACGTGTATGTATTCATCTGTTTTACATTTCTTTTCTTCGTTGGCGCTTCTATTTTTTTAATTGCTGTAATATTTAGAGTTTGAGTGGAGTTTTTAATCACTTTTCAAGTTTTCAATTCTCATAAATCTTATCCTTCTTGTTTCATATTAAAAGAAACAATCTCATAAATATTATTCGTGTTCTTCCTATGTTGTGCAGATGGATCATACAAAGCTCCAGAAAATGGCTGGTGCGGTTCGCACTGGTGGAAAAGGTAGCGTGAGAAGGTTGGTTGCCTTTTTATCTTTTGAAAGTTTTTTAGAGTGTAAGAAGATTTAGTCATCTGTCGTTTGATTTATTTAACAAGAAATCATAAATTATCTCAACCGTAAGATCGAACTCTGGATGTTTCTCATGGTAGGTTTTTTTGGTAAATAATTTATTTGAACCATACTGATATCCTTTCTCCCATCCAGTTCTGCTTTTCTCAATTCTCTCATTCATTGTTCTATTAATTTCGGCCATTCATTTTTATACTCGTTAGAAATTTCAATAGTTCGTAGTTAATCTTTAAAATTTCTGATGTGCAGATAATGTTTTACGACAGCATAAATAATTTTCCTTTTTCCAATTTTTGTCAATTTAAATTGTAGTGTTTAGTTGACTAATGAATGAATATACTAACATAAATTTCATGCTTGTTTGAGTGTTGGATCTTTCAGTTTGGCATATGTTCTTGATATTTTTCATTCTTACTGTAATGGAGGTGCTGTTGGAATATCATTTTTTAATTTTCTTTCTTCTTTTGTTTCTTAAAGATCAATATTTTGCTTTCTCAGTTTTTAGTTTTCTTTCTTTTGTCAATTAAAGGAAGAAGAAGGCTGTTCACAAGACAACTACCACAGACGATAAACGGCTTCAAAGTACCTTGAAAAGAATAGGAGTTAATGCAATTCCTGCTATTGAGGAAGTCAACATTTTCAAGGATGATGTAGTTATTCAATTTACTAACCCGAAGGGTAATTTACGCAACTATATATGTACCCCATGGTTGTTTACCATCAACATCTTGATATGAAGTTAATTTAGTTGTTTTTTGTTATCTATTTCAGTTCAGGCTTCCATTGCGGCAAACACATGGGTTGTTAGTGGTTCTCCTCAAACGAAAAGTATGTCTTCTCACTCTCACCACATTTGAATATACTATAACATTTAACTGATCTCATATTGTAAATTCTAGGGCATTCTTGAAGTAGATATCTAAAAACTGAAACTATTTTTTCTTGCAAATTTTGGCCAACCATTTTAAAACGAACATATGAAAATGACAACGTAGAGTTGTCTACAGACTTGGCTGTTAATAAGATAAATAATCAATATTGCCTACCTATTATTTCAATCATTATTTTGTATCTTAAACCATTTTTAATTCAGCGATGAATATTAATCATCGATTATTTTCCTACGGTGCTGTTTGTAAATGCTTTGAAAAAACTACCGCTCAATTATGTAAGATAAAATTTTGTTATTTGATGAGAAAAAAAAATGCTTATTTGGCACGGTTGCATGTTTGAAGCTGTTTTGAAAATGCTGTTGATTGTATACGAACTTTCAAGTATGTATAGGAATTTAATATGAACACTACACGCTATTCTAGTACTGTATCGTTTGAATTAAATATGAAACTCTTCTATTGAAGCATGTTACAAAGCCTTGAAACTTTTTTAGATAGTTCTTAGTAGAAAATTTAATATAGTCTTGAATCTCTTTTCCTTTTTTAATGTGCATTTGGAATGCGGTAAAGTTGCACAAGGGTTGTTGGGGATTAAGATAAATATTGTAAAAGATGTAATGCAAAATAACATGCTGCTGACTGCCGTTGGCTTGGAATTTGAAACTCGGCCTAATATGGGTCCCTTCAACTATGTTTAAAATAAAGGGTTTGCATTGTATAACCGTTTCACTTAGTAGAGATATTTGGCCATCATTTTAATGGGGGAAATAGTTCAGATTGATACCAAAAAGTTTAGGATAATAGTTTCGTCTTTGCTAAATTATACTATTCTTGATATGTACTTCAATTGTGACATTTGATGTGACCATATTTTTCTTAGCATGTTTGAATGAGTGCACTCGTTAATTTATTGAATGGACGCATTCTTAACTTCTTACCAAAAGCTATTTCGAAAAGTCTGTAATACCTTTGATTCATCTCCTAGGGTGGCATTTTATCATGCTAGAAAATGATACTTCTGCTTACATCTTTTTTCCTCTCAATTAAAGTTGTTTTCATATAAGGAAAAAAAAACATGGCATTGGGTGGTTTAGTTTGACTTGTTTATTTCTCATGGTGAAGCTTTTCTATTAACTCTGGCCAAGATACTCATCGTCATATTTGCCTGTCTTTCGTTATTATCCATCACGATCGAAATGCCATCTCTAATATTTAATTTTTTCTCTCAGAATTGCAAGATATCCTGCCCGGAATTATCAACCAATTGGGTAAGTACACGTGATTGCATTTTTGTGTTCCATCTCGAGTTGCAATTTAAATAACAAGACTTGTTTACGTGTTTAAATTTTAGGACCCGATAACTTGGACAACTTGAGGAAGTTGGCCGAGCAGTTCCAGAAGCAAGCACCTGGAGCAGGTGCCGGTGCTGCAGCAGCAGCAGCAGCTGCCAATGGTGAGGATGATGATGATGATGTTCCCGACCTTGTCGAAGGGCAGACCTTCGAAGCTGCTGCAGAAGAGAAGCAAGCCTCTTAGATAGAGGAGCTCCCAGATGATTTTGTTTAGCTTTTCTTGTTTTTTTTTCTTCTTTACATAATTTAAAAATGTTTGGGAAGAGTTCCATTTTTCTCCGTGTATTTGTTTTTGCTAATCTTTGTTCCCCCCTCCACCTTGCTCACATGTAACTTCCCCGATGAATGGATTTTCGATTGCCTGCCCGGCCCCCTCCCCCTTCAACTGCCAGCCTTAATTCCTCTGAGTAATGTTTTCCATATTTAATGTGCGGAATTTATAGGAAAAATATGGGGATTAAAGTTTTAAGGTCAACTTTTGTATTCGAATATGTTAAGGTATGCTTATTAAGTAGTCATTTCCCCCTCTTCGCT

mRNA sequence

ACCTTCAAGGTAGAACTCTTCCTTCCATTTTCCCTTCACTTCTCATCGTTATCTCAATCCTCTCTTGTTCTTTCTATTTTTTGATTGCTCTTCTTCATCTTCGACGATGAATTTCTTCTGCTGAGGGTTCTACTGTGGTGTATTTTTATTTTATTAGCCGGATTTTGTTTTTGCTTCTTTTGAGATGGATCATACAAAGCTCCAGAAAATGGCTGGTGCGGTTCGCACTGGTGGAAAAGGTAGCGTGAGAAGGAAGAAGAAGGCTGTTCACAAGACAACTACCACAGACGATAAACGGCTTCAAAGTACCTTGAAAAGAATAGGAGTTAATGCAATTCCTGCTATTGAGGAAGTCAACATTTTCAAGGATGATGTAGTTATTCAATTTACTAACCCGAAGGTTCAGGCTTCCATTGCGGCAAACACATGGGTTGTTAGTGGTTCTCCTCAAACGAAAAAATTGCAAGATATCCTGCCCGGAATTATCAACCAATTGGGACCCGATAACTTGGACAACTTGAGGAAGTTGGCCGAGCAGTTCCAGAAGCAAGCACCTGGAGCAGGTGCCGGTGCTGCAGCAGCAGCAGCAGCTGCCAATGGTGAGGATGATGATGATGATGTTCCCGACCTTGTCGAAGGGCAGACCTTCGAAGCTGCTGCAGAAGAGAAGCAAGCCTCTTAGATAGAGGAGCTCCCAGATGATTTTGTTTAGCTTTTCTTGTTTTTTTTTCTTCTTTACATAATTTAAAAATGTTTGGGAAGAGTTCCATTTTTCTCCGTGTATTTGTTTTTGCTAATCTTTGTTCCCCCCTCCACCTTGCTCACATGTAACTTCCCCGATGAATGGATTTTCGATTGCCTGCCCGGCCCCCTCCCCCTTCAACTGCCAGCCTTAATTCCTCTGAGTAATGTTTTCCATATTTAATGTGCGGAATTTATAGGAAAAATATGGGGATTAAAGTTTTAAGGTCAACTTTTGTATTCGAATATGTTAAGGTATGCTTATTAAGTAGTCATTTCCCCCTCTTCGCT

Coding sequence (CDS)

ATGGATCATACAAAGCTCCAGAAAATGGCTGGTGCGGTTCGCACTGGTGGAAAAGGTAGCGTGAGAAGGAAGAAGAAGGCTGTTCACAAGACAACTACCACAGACGATAAACGGCTTCAAAGTACCTTGAAAAGAATAGGAGTTAATGCAATTCCTGCTATTGAGGAAGTCAACATTTTCAAGGATGATGTAGTTATTCAATTTACTAACCCGAAGGTTCAGGCTTCCATTGCGGCAAACACATGGGTTGTTAGTGGTTCTCCTCAAACGAAAAAATTGCAAGATATCCTGCCCGGAATTATCAACCAATTGGGACCCGATAACTTGGACAACTTGAGGAAGTTGGCCGAGCAGTTCCAGAAGCAAGCACCTGGAGCAGGTGCCGGTGCTGCAGCAGCAGCAGCAGCTGCCAATGGTGAGGATGATGATGATGATGTTCCCGACCTTGTCGAAGGGCAGACCTTCGAAGCTGCTGCAGAAGAGAAGCAAGCCTCTTAG

Protein sequence

MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPGAGAGAAAAAAAANGEDDDDDVPDLVEGQTFEAAAEEKQAS

Homology

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BLAST of MELO3C002159.2 vs. NCBI nr
Match: XP_008467234.1 (PREDICTED: nascent polypeptide-associated complex subunit beta-like isoform X2 [Cucumis melo])

HSP 1 Score: 236.1 bits (601), Expect = 8.5e-59
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0


Query: 1   MDHTKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDHTKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDHTKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 61  KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 121 KXXXXXXXXXXXXXXXXXXXXXXXXVPDLVEGQTFEAAAEEKQAS 166
           KXXXXXXXXXXXXXXXXXXXXXXXXVPDLVEGQTFEAAAEEKQAS
Sbjct: 121 KXXXXXXXXXXXXXXXXXXXXXXXXVPDLVEGQTFEAAAEEKQAS 165

[Close]

BLAST of MELO3C002159.2 vs. NCBI nr
Match: XP_016900101.1 (PREDICTED: nascent polypeptide-associated complex subunit beta-like isoform X1 [Cucumis melo])

HSP 1 Score: 236.1 bits (601), Expect = 8.5e-59
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0


Query: 1   MDHTKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDHTKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 4   MDHTKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 63

Query: 61  KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 64  KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 123

Query: 121 KXXXXXXXXXXXXXXXXXXXXXXXXVPDLVEGQTFEAAAEEKQAS 166
           KXXXXXXXXXXXXXXXXXXXXXXXXVPDLVEGQTFEAAAEEKQAS
Sbjct: 124 KXXXXXXXXXXXXXXXXXXXXXXXXVPDLVEGQTFEAAAEEKQAS 168

[Close]

BLAST of MELO3C002159.2 vs. NCBI nr
Match: XP_004137521.1 (PREDICTED: transcription factor BTF3 homolog 4-like [Cucumis sativus])

HSP 1 Score: 231.9 bits (590), Expect = 1.6e-57
Identity = 163/165 (98.79%), Postives = 163/165 (98.79%), Query Frame = 0


Query: 1   MDHTKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDHTKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDHTKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 61  KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 121 KXXXXXXXXXXXXXXXXXXXXXXXXVPDLVEGQTFEAAAEEKQAS 166
           K  XXXXXXXXXXXXXXXXXXXXXXVPDLVEGQTFEAAAEEKQAS
Sbjct: 121 K--XXXXXXXXXXXXXXXXXXXXXXVPDLVEGQTFEAAAEEKQAS 163

[Close]

BLAST of MELO3C002159.2 vs. NCBI nr
Match: KGN64202.1 (hypothetical protein Csa_1G043055 [Cucumis sativus])

HSP 1 Score: 231.9 bits (590), Expect = 1.6e-57
Identity = 163/165 (98.79%), Postives = 163/165 (98.79%), Query Frame = 0


Query: 1   MDHTKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDHTKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 77  MDHTKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 136

Query: 61  KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 137 KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 196

Query: 121 KXXXXXXXXXXXXXXXXXXXXXXXXVPDLVEGQTFEAAAEEKQAS 166
           K  XXXXXXXXXXXXXXXXXXXXXXVPDLVEGQTFEAAAEEKQAS
Sbjct: 197 K--XXXXXXXXXXXXXXXXXXXXXXVPDLVEGQTFEAAAEEKQAS 239

[Close]

BLAST of MELO3C002159.2 vs. NCBI nr
Match: XP_022954733.1 (nascent polypeptide-associated complex subunit beta-like [Cucurbita moschata] >XP_022994949.1 nascent polypeptide-associated complex subunit beta-like [Cucurbita maxima] >XP_023542222.1 nascent polypeptide-associated complex subunit beta-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023542223.1 nascent polypeptide-associated complex subunit beta-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 228.4 bits (581), Expect = 1.8e-56
Identity = 160/165 (96.97%), Postives = 161/165 (97.58%), Query Frame = 0


Query: 1   MDHTKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDHTKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDHTKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQFTNPKVQASIAANTWVVSG+PQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 61  KDDVVIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 121 KXXXXXXXXXXXXXXXXXXXXXXXXVPDLVEGQTFEAAAEEKQAS 166
               XXXXXXXXXXXXXXXXXXXXXVPDLVEGQTFEAAAEEKQAS
Sbjct: 121 ----XXXXXXXXXXXXXXXXXXXXXVPDLVEGQTFEAAAEEKQAS 161

[Close]

BLAST of MELO3C002159.2 vs. TAIR10
Match: AT1G17880.1 (basic transcription factor 3)

HSP 1 Score: 191.8 bits (486), Expect = 3.3e-49
Identity = 112/162 (69.14%), Postives = 120/162 (74.07%), Query Frame = 0


Query: 1   MDHTKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+  KL KMA  VRTGGKG+VRR             KRLQSTLKRIGVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTNTTDDKRLQSTLKRIGVNSIPAIEEVNIF 60

Query: 61  KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQF NPKVQASIAANTWVVSGSPQTKKLQDILP II+QLGPDN+DNL+KLAEQFQ
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPQIISQLGPDNMDNLKKLAEQFQ 120

Query: 121 KXXXXXXXXXXXXXXXXXXXXXXXXVPDLVEGQTFEAAAEEK 163
           K                   XXXX VP+LV G+TFE AAEEK
Sbjct: 121 K----QASGEGNAASATIQEXXXXDVPELV-GETFETAAEEK 157

[Close]

BLAST of MELO3C002159.2 vs. TAIR10
Match: AT1G73230.1 (Nascent polypeptide-associated complex NAC)

HSP 1 Score: 190.7 bits (483), Expect = 7.4e-49
Identity = 124/162 (76.54%), Postives = 133/162 (82.10%), Query Frame = 0


Query: 1   MDHTKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+  KL KMA  VRTGGKG+VRRXXXXXXXXXXXXXKRLQSTLKR+GVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRXXXXXXXXXXXXXKRLQSTLKRVGVNSIPAIEEVNIF 60

Query: 61  KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQF NPKVQASIAANTWVVSG+PQTKKLQDILP II+QLGPDNLDNL+KLAEQFQ
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGTPQTKKLQDILPQIISQLGPDNLDNLKKLAEQFQ 120

Query: 121 KXXXXXXXXXXXXXXXXXXXXXXXXVPDLVEGQTFEAAAEEK 163
           K                  XXXXXXVPDLV G+TFE  A E+
Sbjct: 121 K----QAPGAGDVPATIQEXXXXXXVPDLVVGETFETPATEE 158

[Close]

BLAST of MELO3C002159.2 vs. Swiss-Prot
Match: sp|Q9SMW7|BTF3_ARATH (Basic transcription factor 3 OS=Arabidopsis thaliana OX=3702 GN=BTF3 PE=1 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 6.0e-48
Identity = 112/162 (69.14%), Postives = 120/162 (74.07%), Query Frame = 0


Query: 1   MDHTKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+  KL KMA  VRTGGKG+VRR             KRLQSTLKRIGVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTNTTDDKRLQSTLKRIGVNSIPAIEEVNIF 60

Query: 61  KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQF NPKVQASIAANTWVVSGSPQTKKLQDILP II+QLGPDN+DNL+KLAEQFQ
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPQIISQLGPDNMDNLKKLAEQFQ 120

Query: 121 KXXXXXXXXXXXXXXXXXXXXXXXXVPDLVEGQTFEAAAEEK 163
           K                   XXXX VP+LV G+TFE AAEEK
Sbjct: 121 K----QASGEGNAASATIQEXXXXDVPELV-GETFETAAEEK 157

[Close]

BLAST of MELO3C002159.2 vs. Swiss-Prot
Match: sp|Q9CAT7|BTF3L_ARATH (Nascent polypeptide-associated complex subunit beta OS=Arabidopsis thaliana OX=3702 GN=At1g73230 PE=2 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.3e-47
Identity = 124/162 (76.54%), Postives = 133/162 (82.10%), Query Frame = 0


Query: 1   MDHTKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+  KL KMA  VRTGGKG+VRRXXXXXXXXXXXXXKRLQSTLKR+GVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRXXXXXXXXXXXXXKRLQSTLKRVGVNSIPAIEEVNIF 60

Query: 61  KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQF NPKVQASIAANTWVVSG+PQTKKLQDILP II+QLGPDNLDNL+KLAEQFQ
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGTPQTKKLQDILPQIISQLGPDNLDNLKKLAEQFQ 120

Query: 121 KXXXXXXXXXXXXXXXXXXXXXXXXVPDLVEGQTFEAAAEEK 163
           K                  XXXXXXVPDLV G+TFE  A E+
Sbjct: 121 K----QAPGAGDVPATIQEXXXXXXVPDLVVGETFETPATEE 158

[Close]

BLAST of MELO3C002159.2 vs. Swiss-Prot
Match: sp|Q6PC91|BT3L4_DANRE (Transcription factor BTF3 homolog 4 OS=Danio rerio OX=7955 GN=btf3l4 PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.3e-26
Identity = 63/122 (51.64%), Postives = 85/122 (69.67%), Query Frame = 0


Query: 1   MDHTKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+  KL K+   VR GGKG+ RR             K+LQS+LK++ VN I  IEEVN+ 
Sbjct: 1   MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLVVNNIAGIEEVNMI 60

Query: 61  KDD-VVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF 120
           KDD  VI F NPKVQAS++ANT+ ++G  +TK+L ++LPGI++QLG D+L +LRKLAEQF
Sbjct: 61  KDDGTVIHFNNPKVQASLSANTFAITGHAETKQLTEMLPGILSQLGADSLTSLRKLAEQF 120

Query: 121 QK 122
            +
Sbjct: 121 PR 122

[Close]

BLAST of MELO3C002159.2 vs. Swiss-Prot
Match: sp|A2R091|NACB_ASPNC (Nascent polypeptide-associated complex subunit beta OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=egd1 PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.2e-26
Identity = 69/161 (42.86%), Postives = 95/161 (59.01%), Query Frame = 0


Query: 1   MDHTKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60
           MD  KL +M  +VR GGKG+ RR             K+LQ+TLK++ V  I AIEEVN+F
Sbjct: 1   MDQAKLARMQQSVRIGGKGTPRRKVKKVHKSSGADDKKLQATLKKMNVQPIQAIEEVNMF 60

Query: 61  KDD-VVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF 120
           K+D  VI F  PKV AS+ +NT+ + G+ + K+L +++PGI+NQLGPD+L +LRKLAE +
Sbjct: 61  KEDGNVIHFGAPKVHASVPSNTFALYGNGEEKELTELVPGILNQLGPDSLASLRKLAESY 120

Query: 121 QKXXXXXXXXXXXXXXXXXXXXXXXXVPDLVEGQTFEAAAE 161
           Q                         +PDLVEG+ FE+  E
Sbjct: 121 QN------MQKNQAGADGKKDDEEDDIPDLVEGENFESNVE 155

[Close]

BLAST of MELO3C002159.2 vs. Swiss-Prot
Match: sp|Q4KLF5|BT3L4_XENLA (Transcription factor BTF3 homolog 4 OS=Xenopus laevis OX=8355 GN=btf3l4 PE=2 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 3.8e-26
Identity = 61/122 (50.00%), Postives = 84/122 (68.85%), Query Frame = 0


Query: 1   MDHTKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+  KL K+   VR GGKG+ RR             K+LQS+LK++ VN I  IEEVN+ 
Sbjct: 1   MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMI 60

Query: 61  KDD-VVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF 120
           KDD  VI F NPKVQAS++ANT+ ++G  + K++ ++LPGI++QLG D+L +LRKLAEQF
Sbjct: 61  KDDGTVIHFNNPKVQASLSANTFAITGHAEVKQITEMLPGILSQLGADSLTSLRKLAEQF 120

Query: 121 QK 122
            +
Sbjct: 121 PR 122

[Close]

BLAST of MELO3C002159.2 vs. TrEMBL
Match: tr|A0A1S3CT31|A0A1S3CT31_CUCME (Nascent polypeptide-associated complex subunit beta OS=Cucumis melo OX=3656 GN=LOC103504634 PE=3 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 5.6e-59
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0


Query: 1   MDHTKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDHTKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDHTKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 61  KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 121 KXXXXXXXXXXXXXXXXXXXXXXXXVPDLVEGQTFEAAAEEKQAS 166
           KXXXXXXXXXXXXXXXXXXXXXXXXVPDLVEGQTFEAAAEEKQAS
Sbjct: 121 KXXXXXXXXXXXXXXXXXXXXXXXXVPDLVEGQTFEAAAEEKQAS 165

[Close]

BLAST of MELO3C002159.2 vs. TrEMBL
Match: tr|A0A1S4DVT8|A0A1S4DVT8_CUCME (Nascent polypeptide-associated complex subunit beta OS=Cucumis melo OX=3656 GN=LOC103504634 PE=3 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 5.6e-59
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0


Query: 1   MDHTKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDHTKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 4   MDHTKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 63

Query: 61  KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 64  KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 123

Query: 121 KXXXXXXXXXXXXXXXXXXXXXXXXVPDLVEGQTFEAAAEEKQAS 166
           KXXXXXXXXXXXXXXXXXXXXXXXXVPDLVEGQTFEAAAEEKQAS
Sbjct: 124 KXXXXXXXXXXXXXXXXXXXXXXXXVPDLVEGQTFEAAAEEKQAS 168

[Close]

BLAST of MELO3C002159.2 vs. TrEMBL
Match: tr|A0A0A0LTU8|A0A0A0LTU8_CUCSA (Nascent polypeptide-associated complex subunit beta OS=Cucumis sativus OX=3659 GN=Csa_1G043055 PE=3 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.1e-57
Identity = 163/165 (98.79%), Postives = 163/165 (98.79%), Query Frame = 0


Query: 1   MDHTKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDHTKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 77  MDHTKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 136

Query: 61  KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 137 KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 196

Query: 121 KXXXXXXXXXXXXXXXXXXXXXXXXVPDLVEGQTFEAAAEEKQAS 166
           K  XXXXXXXXXXXXXXXXXXXXXXVPDLVEGQTFEAAAEEKQAS
Sbjct: 197 K--XXXXXXXXXXXXXXXXXXXXXXVPDLVEGQTFEAAAEEKQAS 239

[Close]

BLAST of MELO3C002159.2 vs. TrEMBL
Match: tr|V4TML2|V4TML2_9ROSI (Nascent polypeptide-associated complex subunit beta OS=Citrus clementina OX=85681 GN=CICLE_v10022594mg PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.2e-50
Identity = 129/162 (79.63%), Postives = 133/162 (82.10%), Query Frame = 0


Query: 1   MDHTKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+  KL KMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MNVEKLMKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQF NPKVQASIAANTWVVSG+PQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 61  KDDVVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 121 KXXXXXXXXXXXXXXXXXXXXXXXXVPDLVEGQTFEAAAEEK 163
           K                        VP+LV G+TFEAAAEEK
Sbjct: 121 K-----QAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAEEK 157

[Close]

BLAST of MELO3C002159.2 vs. TrEMBL
Match: tr|A0A2H5QHD0|A0A2H5QHD0_CITUN (Nascent polypeptide-associated complex subunit beta OS=Citrus unshiu OX=55188 GN=CUMW_230090 PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.2e-50
Identity = 129/162 (79.63%), Postives = 133/162 (82.10%), Query Frame = 0


Query: 1   MDHTKLQKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+  KL KMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MNVEKLMKMAGAVRTGGKGSVRRXXXXXXXXXXXXXKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQF NPKVQASIAANTWVVSG+PQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 61  KDDVVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 121 KXXXXXXXXXXXXXXXXXXXXXXXXVPDLVEGQTFEAAAEEK 163
           K                        VP+LV G+TFEAAAEEK
Sbjct: 121 K-----QAPNAGTGAPTTQEDDDDEVPELVAGETFEAAAEEK 157

The following BLAST results are available for this feature:

BLAST of MELO3C002159.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008467234.1	8.5e-59	100.00	PREDICTED: nascent polypeptide-associated complex subunit beta-like isoform X2 [...	[more]
XP_016900101.1	8.5e-59	100.00	PREDICTED: nascent polypeptide-associated complex subunit beta-like isoform X1 [...	[more]
XP_004137521.1	1.6e-57	98.79	PREDICTED: transcription factor BTF3 homolog 4-like [Cucumis sativus]	[more]
KGN64202.1	1.6e-57	98.79	hypothetical protein Csa_1G043055 [Cucumis sativus]	[more]
XP_022954733.1	1.8e-56	96.97	nascent polypeptide-associated complex subunit beta-like [Cucurbita moschata] >X...	[more]

BLAST of MELO3C002159.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G17880.1	3.3e-49	69.14	basic transcription factor 3	[more]
AT1G73230.1	7.4e-49	76.54	Nascent polypeptide-associated complex NAC	[more]

BLAST of MELO3C002159.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SMW7\|BTF3_ARATH	6.0e-48	69.14	Basic transcription factor 3 OS=Arabidopsis thaliana OX=3702 GN=BTF3 PE=1 SV=1	[more]
sp\|Q9CAT7\|BTF3L_ARATH	1.3e-47	76.54	Nascent polypeptide-associated complex subunit beta OS=Arabidopsis thaliana OX=3...	[more]
sp\|Q6PC91\|BT3L4_DANRE	1.3e-26	51.64	Transcription factor BTF3 homolog 4 OS=Danio rerio OX=7955 GN=btf3l4 PE=2 SV=1	[more]
sp\|A2R091\|NACB_ASPNC	2.2e-26	42.86	Nascent polypeptide-associated complex subunit beta OS=Aspergillus niger (strain...	[more]
sp\|Q4KLF5\|BT3L4_XENLA	3.8e-26	50.00	Transcription factor BTF3 homolog 4 OS=Xenopus laevis OX=8355 GN=btf3l4 PE=2 SV=...	[more]

BLAST of MELO3C002159.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CT31\|A0A1S3CT31_CUCME	5.6e-59	100.00	Nascent polypeptide-associated complex subunit beta OS=Cucumis melo OX=3656 GN=L...	[more]
tr\|A0A1S4DVT8\|A0A1S4DVT8_CUCME	5.6e-59	100.00	Nascent polypeptide-associated complex subunit beta OS=Cucumis melo OX=3656 GN=L...	[more]
tr\|A0A0A0LTU8\|A0A0A0LTU8_CUCSA	1.1e-57	98.79	Nascent polypeptide-associated complex subunit beta OS=Cucumis sativus OX=3659 G...	[more]
tr\|V4TML2\|V4TML2_9ROSI	1.2e-50	79.63	Nascent polypeptide-associated complex subunit beta OS=Citrus clementina OX=8568...	[more]
tr\|A0A2H5QHD0\|A0A2H5QHD0_CITUN	1.2e-50	79.63	Nascent polypeptide-associated complex subunit beta OS=Citrus unshiu OX=55188 GN...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR038187	NAC_A/B_dom_sf
IPR002715	Nas_poly-pep-assoc_cplx_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C002159.2.1	MELO3C002159.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002715	Nascent polypeptide-associated complex NAC domain	SMART	SM01407	NAC_2	coord: 36..91 e-value: 3.9E-22 score: 89.6
IPR002715	Nascent polypeptide-associated complex NAC domain	PFAM	PF01849	NAC	coord: 36..91 e-value: 3.0E-20 score: 71.9
IPR002715	Nascent polypeptide-associated complex NAC domain	PROSITE	PS51151	NAC_AB	coord: 33..97 score: 16.097
IPR038187	NAC A/B domain superfamily	GENE3D	G3DSA:2.20.70.30		coord: 48..104 e-value: 7.8E-28 score: 97.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..149
None	No IPR available	PANTHER	PTHR10351:SF47	SUBFAMILY NOT NAMED	coord: 1..162
None	No IPR available	PANTHER	PTHR10351	TRANSCRIPTION FACTOR BTF3	coord: 1..162

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C002159.2	Cucsa.122190	Cucumber (Gy14) v1	cgymedB182
MELO3C002159.2	CmaCh13G009680	Cucurbita maxima (Rimu)	cmamedB214
MELO3C002159.2	CmaCh18G000920	Cucurbita maxima (Rimu)	cmamedB424
MELO3C002159.2	CmoCh18G000690	Cucurbita moschata (Rifu)	cmomedB408
MELO3C002159.2	CmoCh13G010020	Cucurbita moschata (Rifu)	cmomedB202
MELO3C002159.2	Lsi02G002620	Bottle gourd (USVL1VR-Ls)	lsimedB189
MELO3C002159.2	Cp4.1LG09g11010	Cucurbita pepo (Zucchini)	cpemedB031
MELO3C002159.2	Cp4.1LG20g01770	Cucurbita pepo (Zucchini)	cpemedB560
MELO3C002159.2	CsGy1G007320	Cucumber (Gy14) v2	cgybmedB020
MELO3C002159.2	Cla008391	Watermelon (97103) v1	medwmB163
MELO3C002159.2	ClCG01G014900	Watermelon (Charleston Gray)	medwcgB125
MELO3C002159.2	Cla97C01G013930	Watermelon (97103) v2	medwmbB125
MELO3C002159.2	Bhi08G001103	Wax gourd	medwgoB175
MELO3C002159.2	Carg04871	Silver-seed gourd	carmedB0397
MELO3C002159.2	Carg06647	Silver-seed gourd	carmedB0504

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C002159.2	Cucumber (Chinese Long) v2	cumedB022
MELO3C002159.2	Wild cucumber (PI 183967)	cpimedB023
MELO3C002159.2	Cucumber (Chinese Long) v3	cucmedB022