CmoCh18G000690 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh18G000690
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Nascent polypeptide-associated complex subunit beta
Location	Cmo_Chr18 : 472938 .. 476122 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAATGAAAAACCTAGGTTAGATGAATTAGTCGAACTGTAATTACAGTACGAGCAGAAGCTTACTTTTAATGAATGTTTTTCCGTGAAATGTTGACGGCCTCTCTAGGACAATCTCACTCATGTACTCTCTACGATGAATATGAGGAAATGAATGAATAATTTGTAACTGAAAATATTTTCGGATAAGCTTATGCCTCGATAATGTTTTGCAGTTTTGCCTTTCTTGCGGATATCGTTATTGTTAATTGATTCTTCTAATAAGTTTTTTGTTTGATTTATAGTTATAAAAGATATGGCCGAGCACATGTATGCGTTAATCTGTTTTACCTCTCTTTTCTCCGTTGACGAATCTCTGTTTTTTTTTTTTAATTGCTCTTATACAAATCTACCTTCCTTATTCACTTATCAAGTTTTCGATTATCATAAACATTGTGTTTGTTCCTATATTGCGCAGATGGATCATACCAAGCTCCAGAAGATGGCTGGTGCAGTTCGCACTGGAGGAAAAGGTAGCGTGAGAAGGTTAGTTTCATCTGCATCTTTTGAAAGTTAACGAGTGTGTGAGAAGAGTTAGTTATCTGTTGGTTGATTTACTTAATAAGGAGTTGGAAATGAATTCAACTGGAATATGTATCTCTTAAAAGTTTTATCTGGATGTGCTTGATTATATTTTATTTGTTGGTGAGTAATTTCATTGAACCATGGTTTACGGAAAATAATATCATCCAACTGTAGACTTGGCATGATCCTAAGGATGAAGGTAACATGATATGTATACACCGTTCCCCCATCTACTTCTAATTTTCTCCGTTTTCTCATCCATCATTCTAATAGTTTTAATGGATTTCTTTATTGTAATTTGTGAAGTTTGCTTTTGATAGTAGTTCATTTTGAAAATTTGATTTACAGCTATTGGTTTACCATTGACAACATATATGATTCTTCTTGATCGAACTACTTGGTTGACTAATGGATGAATCACAAACGTAAATTTCATGTTTGTTTGTGCATTGCATTGTTCATTTAAGCAGGTTGTTGTCCCTCGATATTTTCCCATGCTTTCTTAACAGGGAAATGTCGTTTTGCTGTGGGAATATCATTTTCATACGCTTTTTTCAATGATATATATATTTTTTAATTTTTCTCATTTTTTTTAATAAAATTTTTCTTTATGTCTGTTGTCAATTGAAGGAAGAAGAAAGCTGTTCACAAGACAACTACCACAGATGATAAACGGCTTCAAAGTACCTTGAAGAGAATAGGAGTTAATGCCATTCCTGCAATTGAGGAAGTCAACATCTTCAAGGATGATGTAGTTATTCAATTTACCAACCCGAAAGGTAAGGCCACTCAACTACCCTTTGGCTCTTTACCGTCATATCTTGATACGTAAGATATCTAATGTTTAGTTGTTTCTTGTTCTCTATTTCAGTTCAAGCTTCTATTGCAGCAAACACCTGGGTTGTTAGTGGTACTCCTCAAACGAAAAGTAAGTCTCTCCCAACACTTCTTGAATAGAATGAAACATATAACTGATCTTGTGTCCTCGAGTCTAGGGGGATTCTTTGAGCAGTTCTCTAAAATGAAACACTTACTGTTTTTTGGAAAATCGGTCATATAATTTTTAAAACAAAAGAATAGCCTAAATGAAACATCGTATAGTTGTATCTGCTGTATTTTACTTAGCTATTCACGTCCAATTGTATAGTTCTGGTTTTTATCTTAAAAGCCTCGTTACTCTGTATTTCAAACCATTTCTAACTCAATGATGAATACTGCTTATCAAAAGTGTTCATAAGGAGTCGTTTTGGGAATGCTATATAAAAACTATTCAATTTTTTTACGAAATTTTTTTATTCTTTAAATAAGGGGAACTTAATTGTACACTACAGCTTCAAACGTTTAAGTGTTCTTAGGGATTAGGATTATATTGTTGAAAATTTTATCCAACCAGCATGTTCTCGTTGGCTTGGAATTCGTAATGTGTCATAATAAGGGGGTTTGCTTTAATTCTAATGGACTGTTCCACTAGGTCCAGCATAGGAATACATCTGAGGCTAGGCTGATAAAGTATATTATTACGTTATGGTCTTGGTCCAAAGCTATCGTTTTAAATGGGGGGCAAGTAGTTCTACTTGAAACTGAATAATCTTTATAAATTATAAAATAGTTAACTGTCGTTAAATTATGTCGTTCTTGACATTTATTTAAATTGCAACATTGACAATTGTAACATCTAATCTGACCCTATCTTATATGTATGCTGTGTAAATGAGCACCTTGCTTATTTGTTACACCTTATACGGCTAGAAAACATGGGTTTTTGATGTTTATACCTTTTTTTTATTTTTAATTTTTAATTTCTAGTGATGGAAGAGACAGCATGTTTTTGTCGATGCATGTCATGGTTGGAACTTTTTATCTTATATGCCCTCCTTAATAATTTGATTTCTTTTCACAGAATTGCAGGATATTCTCCCTGGAATTATCAACCAGTTGGGTTAGTATGCTAGTGTTTTCGTGTTTCCCGCTGTGTTGTAGATTTAGTAAAAGAGATCGAACACTGACTCAATTCACATGTAAATATTATAGGACCTGATAACTTAGACAATCTGAGGAAGTTAGCTGAGCAGTTCCAGAAGCAAGCACCTGGGGCAGGTGCTGGTGCAGCCAATGCACAGGATGACGATGACGACGACGATGTTCCCGACCTCGTTGAAGGACAGACTTTCGAAGCTGCTGCAGAAGAGAAGCAAGCTTCCTAGAGAGGATCAATCTCTTGGGATGATTTTGTTTAGTTTTTACATATTTTTAATGTTTGGAAGAGTCCTTTTTTCTCCTTGTATTTGTTTTTGCTAAATCTTGTTTCCCATGGCATTTTACTCTCTCCACCCTCTTGTAACCCTGGATGGATGGATTGGATTGGATTTTCTATTACCCCCACCCACCCTTCAACAGCCTTGCTTCCTTGGGAACGCTCTTTTTATATATAGGCGCTGAATTAATGCCCTCTTCCATCCGCCCAATCCAACGAAAAATCTGGGGGTCGAACATGAGCCAGCTTTGTACGCAGATATGTTAAGGTATTCATGTCAATTAGTTCTTTCACCTAAGTTCTCATACTATTATTGTAGCGCATTTTAGTCATTATTCTAGAACTTTTGAGTTGAAGCTAACGAG

mRNA sequence

ATGAACAATGAAAAACCTAGTTATAAAAGATATGGCCGAGCACATATGGATCATACCAAGCTCCAGAAGATGGCTGGTGCAGTTCGCACTGGAGGAAAAGGTAGCGTGAGAAGGAAGAAGAAAGCTGTTCACAAGACAACTACCACAGATGATAAACGGCTTCAAAGTACCTTGAAGAGAATAGGAGTTAATGCCATTCCTGCAATTGAGGAAGTCAACATCTTCAAGGATGATGTAGTTATTCAATTTACCAACCCGAAAGTTCAAGCTTCTATTGCAGCAAACACCTGGGTTGTTAGTGGTACTCCTCAAACGAAAAAATTGCAGGATATTCTCCCTGGAATTATCAACCAGTTGGGACCTGATAACTTAGACAATCTGAGGAAGTTAGCTGAGCAGTTCCAGAAGCAAGCACCTGGGGCAGGTGCTGGTGCAGCCAATGCACAGGATGACGATGACGACGACGATGTTCCCGACCTCGTTGAAGGACAGACTTTCGAAGCTGCTGCAGAAGAGAAGCAAGCTTCCTAGAGAGGATCAATCTCTTGGGATGATTTTGTTTAGTTTTTACATATTTTTAATGTTTGGAAGAGTCCTTTTTTCTCCTTGTATTTGTTTTTGCTAAATCTTGTTTCCCATGGCATTTTACTCTCTCCACCCTCTTGTAACCCTGGATGGATGGATTGGATTGGATTTTCTATTACCCCCACCCACCCTTCAACAGCCTTGCTTCCTTGGGAACGCTCTTTTTATATATAGGCGCTGAATTAATGCCCTCTTCCATCCGCCCAATCCAACGAAAAATCTGGGGGTCGAACATGAGCCAGCTTTGTACGCAGATATGTTAAGGTATTCATGTCAATTAGTTCTTTCACCTAAGTTCTCATACTATTATTGTAGCGCATTTTAGTCATTATTCTAGAACTTTTGAGTTGAAGCTAACGAG

Coding sequence (CDS)

ATGAACAATGAAAAACCTAGTTATAAAAGATATGGCCGAGCACATATGGATCATACCAAGCTCCAGAAGATGGCTGGTGCAGTTCGCACTGGAGGAAAAGGTAGCGTGAGAAGGAAGAAGAAAGCTGTTCACAAGACAACTACCACAGATGATAAACGGCTTCAAAGTACCTTGAAGAGAATAGGAGTTAATGCCATTCCTGCAATTGAGGAAGTCAACATCTTCAAGGATGATGTAGTTATTCAATTTACCAACCCGAAAGTTCAAGCTTCTATTGCAGCAAACACCTGGGTTGTTAGTGGTACTCCTCAAACGAAAAAATTGCAGGATATTCTCCCTGGAATTATCAACCAGTTGGGACCTGATAACTTAGACAATCTGAGGAAGTTAGCTGAGCAGTTCCAGAAGCAAGCACCTGGGGCAGGTGCTGGTGCAGCCAATGCACAGGATGACGATGACGACGACGATGTTCCCGACCTCGTTGAAGGACAGACTTTCGAAGCTGCTGCAGAAGAGAAGCAAGCTTCCTAG

Homology

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BLAST of CmoCh18G000690 vs. Swiss-Prot
Match: BTF3L_ARATH (Nascent polypeptide-associated complex subunit beta OS=Arabidopsis thaliana GN=At1g73230 PE=2 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 2.3e-66
Identity = 132/158 (83.54%), Postives = 142/158 (89.87%), Query Frame = 1


Query: 16  MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 75
           M+  KL KMA  VRTGGKG+VRRKKKAVHKTTTTDDKRLQSTLKR+GVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRVGVNSIPAIEEVNIF 60

Query: 76  KDDVVIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 135
           KDDVVIQF NPKVQASIAANTWVVSGTPQTKKLQDILP II+QLGPDNLDNL+KLAEQFQ
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGTPQTKKLQDILPQIISQLGPDNLDNLKKLAEQFQ 120

Query: 136 KQAPGAGAGAANAQDDDDDDDVPDLVEGQTFEAAAEEK 174
           KQAPGAG   A  Q++DDDDDVPDLV G+TFE  A E+
Sbjct: 121 KQAPGAGDVPATIQEEDDDDDVPDLVVGETFETPATEE 158

[Close]

BLAST of CmoCh18G000690 vs. Swiss-Prot
Match: BTF3_ARATH (Basic transcription factor 3 OS=Arabidopsis thaliana GN=BTF3 PE=1 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 9.0e-63
Identity = 128/158 (81.01%), Postives = 140/158 (88.61%), Query Frame = 1


Query: 16  MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 75
           M+  KL KMA  VRTGGKG+VRRKKKAVHKT TTDDKRLQSTLKRIGVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTNTTDDKRLQSTLKRIGVNSIPAIEEVNIF 60

Query: 76  KDDVVIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 135
           KDDVVIQF NPKVQASIAANTWVVSG+PQTKKLQDILP II+QLGPDN+DNL+KLAEQFQ
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPQIISQLGPDNMDNLKKLAEQFQ 120

Query: 136 KQAPGAGAGAANAQDDDDDDDVPDLVEGQTFEAAAEEK 174
           KQA G G  A+    ++DDDDVP+LV G+TFE AAEEK
Sbjct: 121 KQASGEGNAASATIQEEDDDDVPELV-GETFETAAEEK 157

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BLAST of CmoCh18G000690 vs. Swiss-Prot
Match: NACB_AJECN (Nascent polypeptide-associated complex subunit beta OS=Ajellomyces capsulatus (strain NAm1 / WU24) GN=EGD1 PE=3 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.3e-37
Identity = 84/158 (53.16%), Postives = 114/158 (72.15%), Query Frame = 1


Query: 16  MDHTKLQKMAGAVRTG-GKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNI 75
           MD  KL ++  +VR G GKG+ RRK K VHK++ TDDK+LQ++LK++ V  I AIEEVN+
Sbjct: 1   MDQAKLARLQQSVRIGKGKGTPRRKTKKVHKSSGTDDKKLQTSLKKLNVQPIQAIEEVNM 60

Query: 76  FKDDV-VIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQLGPDNLDNLRKLAEQ 135
           FK+D  VI F  PKV AS+ +NT+ + G  + K+L +++PGI+NQLGPD+L +LRKLAE 
Sbjct: 61  FKEDGNVIHFAAPKVHASVPSNTFAIYGNGEDKELTELVPGILNQLGPDSLASLRKLAES 120

Query: 136 FQKQAPGAGAGAANAQDDDDDDDVPDLVEGQTFEAAAE 172
           +Q    G G   A   DDDDDD++PDLVEG+ FE+  E
Sbjct: 121 YQSMQKGEGGEDAKKDDDDDDDEIPDLVEGENFESKVE 158

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BLAST of CmoCh18G000690 vs. Swiss-Prot
Match: BT3L4_DANRE (Transcription factor BTF3 homolog 4 OS=Danio rerio GN=btf3l4 PE=2 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.9e-36
Identity = 88/160 (55.00%), Postives = 118/160 (73.75%), Query Frame = 1


Query: 16  MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 75
           M+  KL K+   VR GGKG+ RRKKK VH+T T DDK+LQS+LK++ VN I  IEEVN+ 
Sbjct: 1   MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLVVNNIAGIEEVNMI 60

Query: 76  KDD-VVIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF 135
           KDD  VI F NPKVQAS++ANT+ ++G  +TK+L ++LPGI++QLG D+L +LRKLAEQF
Sbjct: 61  KDDGTVIHFNNPKVQASLSANTFAITGHAETKQLTEMLPGILSQLGADSLTSLRKLAEQF 120

Query: 136 QKQAPGAGAGAANAQD-DDDDDDVPDLVEGQTFEAAAEEK 174
            +Q       A  A+D D++DDDVPDLVE   F+ A++ +
Sbjct: 121 PRQV--LDNKAPKAEDIDEEDDDVPDLVE--NFDEASKNE 156

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BLAST of CmoCh18G000690 vs. Swiss-Prot
Match: NACB_PHANO (Nascent polypeptide-associated complex subunit beta OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=EGD1 PE=3 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.2e-35
Identity = 82/158 (51.90%), Postives = 110/158 (69.62%), Query Frame = 1


Query: 16  MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 75
           MD  KL +M  +VR GGKG+ RRK K VHK++ TDDK+LQ+ LK++ V  I AIEEVN+F
Sbjct: 1   MDQAKLARMQASVRIGGKGTPRRKVKKVHKSSGTDDKKLQTALKKLNVQPIQAIEEVNMF 60

Query: 76  KDDV-VIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF 135
           K D  VI F+ PKV AS+ +NT+ + G  + K+L +++PGI+NQLGPD+L +LRKLAE +
Sbjct: 61  KSDGNVIHFSAPKVHASVPSNTFAIYGNGEDKELTELVPGILNQLGPDSLASLRKLAESY 120

Query: 136 QKQAPGAGA-GAANAQDDDDDDDVPDLVEGQTFEAAAE 172
           Q      G  G     DD+DDDD+P+LV G  FE+  E
Sbjct: 121 QSMQKEKGEDGDKKDDDDEDDDDIPELVAGDNFESKTE 158

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BLAST of CmoCh18G000690 vs. TrEMBL
Match: A0A0A0LTU8_CUCSA (Nascent polypeptide-associated complex subunit beta OS=Cucumis sativus GN=Csa_1G043055 PE=3 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 2.2e-76
Identity = 157/171 (91.81%), Postives = 161/171 (94.15%), Query Frame = 1


Query: 8   YKRYGRAHMDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIP 67
           +K+   A MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIP
Sbjct: 69  FKKRDEAPMDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIP 128

Query: 68  AIEEVNIFKDDVVIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQLGPDNLDNL 127
           AIEEVNIFKDDVVIQFTNPKVQASIAANTWVVSG+PQTKKLQDILPGIINQLGPDNLDNL
Sbjct: 129 AIEEVNIFKDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNL 188

Query: 128 RKLAEQFQKQAPGAGAG--AANAQDDDDDDDVPDLVEGQTFEAAAEEKQAS 177
           RKLAEQFQKQAPG GAG  AA A  +DDDDDVPDLVEGQTFEAAAEEKQAS
Sbjct: 189 RKLAEQFQKQAPGVGAGAAAAAANGEDDDDDVPDLVEGQTFEAAAEEKQAS 239

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BLAST of CmoCh18G000690 vs. TrEMBL
Match: D7TXR6_VITVI (Nascent polypeptide-associated complex subunit beta OS=Vitis vinifera GN=VIT_17s0053g00620 PE=3 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 1.4e-70
Identity = 146/157 (92.99%), Postives = 150/157 (95.54%), Query Frame = 1


Query: 16  MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 75
           M+  KL KMAGAVRTGGKGS+RRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MNREKLMKMAGAVRTGGKGSMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 76  KDDVVIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 135
           KDDVVIQF NPKVQASIAANTWVVSG+PQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 61  KDDVVIQFLNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 136 KQAPGAGAGAANAQDDDDDDDVPDLVEGQTFEAAAEE 173
           KQAPGAGAGAA AQ DDDDD+VPDLV GQTFEAAAEE
Sbjct: 121 KQAPGAGAGAAAAQ-DDDDDEVPDLVAGQTFEAAAEE 156

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BLAST of CmoCh18G000690 vs. TrEMBL
Match: A0A0U4IR75_ZIZJJ (Nascent polypeptide-associated complex subunit beta OS=Ziziphus jujuba GN=BTF3 PE=2 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 6.5e-68
Identity = 142/164 (86.59%), Postives = 149/164 (90.85%), Query Frame = 1


Query: 16  MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 75
           M+  KL KMAGAVRTGGKGS+RRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MNREKLMKMAGAVRTGGKGSMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 76  KDDVVIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 135
           KDDVVIQF NPKVQASIAANTWVVSG+PQTKKLQDILP I+NQLGPDNLDNL+KLAEQFQ
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPSILNQLGPDNLDNLKKLAEQFQ 120

Query: 136 KQAPGAGAG---AANAQDDDDDDDVPDLVEGQTFEAAAEEKQAS 177
           KQAPGAGAG   AA    +DDDDDVPDLV GQTFEAAAEE  A+
Sbjct: 121 KQAPGAGAGDGAAAATAPEDDDDDVPDLVAGQTFEAAAEEGHAA 164

[Close]

BLAST of CmoCh18G000690 vs. TrEMBL
Match: A0A067EXA0_CITSI (Nascent polypeptide-associated complex subunit beta OS=Citrus sinensis GN=CISIN_1g031135mg PE=3 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 8.5e-68
Identity = 141/158 (89.24%), Postives = 146/158 (92.41%), Query Frame = 1


Query: 16  MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 75
           M+  KL KMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 76  KDDVVIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 135
           KDDVVIQF NPKVQASIAANTWVVSG PQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 61  KDDVVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 136 KQAPGAGAGAANAQDDDDDDDVPDLVEGQTFEAAAEEK 174
           KQAP AG GA   Q +DDDD+VP+LV G+TFEAAAEEK
Sbjct: 121 KQAPNAGTGAPTTQ-EDDDDEVPELVAGETFEAAAEEK 157

[Close]

BLAST of CmoCh18G000690 vs. TrEMBL
Match: V4TML2_9ROSI (Nascent polypeptide-associated complex subunit beta OS=Citrus clementina GN=CICLE_v10022594mg PE=3 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 8.5e-68
Identity = 141/158 (89.24%), Postives = 146/158 (92.41%), Query Frame = 1


Query: 16  MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 75
           M+  KL KMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 76  KDDVVIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 135
           KDDVVIQF NPKVQASIAANTWVVSG PQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 61  KDDVVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 136 KQAPGAGAGAANAQDDDDDDDVPDLVEGQTFEAAAEEK 174
           KQAP AG GA   Q +DDDD+VP+LV G+TFEAAAEEK
Sbjct: 121 KQAPNAGTGAPTTQ-EDDDDEVPELVAGETFEAAAEEK 157

[Close]

BLAST of CmoCh18G000690 vs. TAIR10
Match: AT1G73230.1 (AT1G73230.1 Nascent polypeptide-associated complex NAC)

HSP 1 Score: 253.1 bits (645), Expect = 1.3e-67
Identity = 132/158 (83.54%), Postives = 142/158 (89.87%), Query Frame = 1


Query: 16  MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 75
           M+  KL KMA  VRTGGKG+VRRKKKAVHKTTTTDDKRLQSTLKR+GVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRVGVNSIPAIEEVNIF 60

Query: 76  KDDVVIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 135
           KDDVVIQF NPKVQASIAANTWVVSGTPQTKKLQDILP II+QLGPDNLDNL+KLAEQFQ
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGTPQTKKLQDILPQIISQLGPDNLDNLKKLAEQFQ 120

Query: 136 KQAPGAGAGAANAQDDDDDDDVPDLVEGQTFEAAAEEK 174
           KQAPGAG   A  Q++DDDDDVPDLV G+TFE  A E+
Sbjct: 121 KQAPGAGDVPATIQEEDDDDDVPDLVVGETFETPATEE 158

[Close]

BLAST of CmoCh18G000690 vs. TAIR10
Match: AT1G17880.1 (AT1G17880.1 basic transcription factor 3)

HSP 1 Score: 241.1 bits (614), Expect = 5.1e-64
Identity = 128/158 (81.01%), Postives = 140/158 (88.61%), Query Frame = 1


Query: 16  MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 75
           M+  KL KMA  VRTGGKG+VRRKKKAVHKT TTDDKRLQSTLKRIGVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTNTTDDKRLQSTLKRIGVNSIPAIEEVNIF 60

Query: 76  KDDVVIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 135
           KDDVVIQF NPKVQASIAANTWVVSG+PQTKKLQDILP II+QLGPDN+DNL+KLAEQFQ
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPQIISQLGPDNMDNLKKLAEQFQ 120

Query: 136 KQAPGAGAGAANAQDDDDDDDVPDLVEGQTFEAAAEEK 174
           KQA G G  A+    ++DDDDVP+LV G+TFE AAEEK
Sbjct: 121 KQASGEGNAASATIQEEDDDDVPELV-GETFETAAEEK 157

[Close]

BLAST of CmoCh18G000690 vs. NCBI nr
Match: gi|700209106|gb|KGN64202.1| (hypothetical protein Csa_1G043055 [Cucumis sativus])

HSP 1 Score: 293.1 bits (749), Expect = 3.2e-76
Identity = 157/171 (91.81%), Postives = 161/171 (94.15%), Query Frame = 1


Query: 8   YKRYGRAHMDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIP 67
           +K+   A MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIP
Sbjct: 69  FKKRDEAPMDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIP 128

Query: 68  AIEEVNIFKDDVVIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQLGPDNLDNL 127
           AIEEVNIFKDDVVIQFTNPKVQASIAANTWVVSG+PQTKKLQDILPGIINQLGPDNLDNL
Sbjct: 129 AIEEVNIFKDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNL 188

Query: 128 RKLAEQFQKQAPGAGAG--AANAQDDDDDDDVPDLVEGQTFEAAAEEKQAS 177
           RKLAEQFQKQAPG GAG  AA A  +DDDDDVPDLVEGQTFEAAAEEKQAS
Sbjct: 189 RKLAEQFQKQAPGVGAGAAAAAANGEDDDDDVPDLVEGQTFEAAAEEKQAS 239

[Close]

BLAST of CmoCh18G000690 vs. NCBI nr
Match: gi|659066946|ref|XP_008467234.1| (PREDICTED: transcription factor BTF3 homolog 4-like [Cucumis melo])

HSP 1 Score: 291.6 bits (745), Expect = 9.3e-76
Identity = 156/165 (94.55%), Postives = 158/165 (95.76%), Query Frame = 1


Query: 16  MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 75
           MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 76  KDDVVIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 135
           KDDVVIQFTNPKVQASIAANTWVVSG+PQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 61  KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 136 KQAPGAGAG----AANAQDDDDDDDVPDLVEGQTFEAAAEEKQAS 177
           KQAPGAGAG    AA A  +DDDDDVPDLVEGQTFEAAAEEKQAS
Sbjct: 121 KQAPGAGAGAAAAAAAANGEDDDDDVPDLVEGQTFEAAAEEKQAS 165

[Close]

BLAST of CmoCh18G000690 vs. NCBI nr
Match: gi|449439495|ref|XP_004137521.1| (PREDICTED: transcription factor BTF3 homolog 4-like [Cucumis sativus])

HSP 1 Score: 290.8 bits (743), Expect = 1.6e-75
Identity = 155/163 (95.09%), Postives = 157/163 (96.32%), Query Frame = 1


Query: 16  MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 75
           MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 76  KDDVVIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 135
           KDDVVIQFTNPKVQASIAANTWVVSG+PQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 61  KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 136 KQAPGAGAG--AANAQDDDDDDDVPDLVEGQTFEAAAEEKQAS 177
           KQAPG GAG  AA A  +DDDDDVPDLVEGQTFEAAAEEKQAS
Sbjct: 121 KQAPGVGAGAAAAAANGEDDDDDVPDLVEGQTFEAAAEEKQAS 163

[Close]

BLAST of CmoCh18G000690 vs. NCBI nr
Match: gi|225457458|ref|XP_002265041.1| (PREDICTED: transcription factor BTF3 homolog 4 [Vitis vinifera])

HSP 1 Score: 273.9 bits (699), Expect = 2.0e-70
Identity = 146/157 (92.99%), Postives = 150/157 (95.54%), Query Frame = 1


Query: 16  MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 75
           M+  KL KMAGAVRTGGKGS+RRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MNREKLMKMAGAVRTGGKGSMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 76  KDDVVIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 135
           KDDVVIQF NPKVQASIAANTWVVSG+PQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 61  KDDVVIQFLNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 136 KQAPGAGAGAANAQDDDDDDDVPDLVEGQTFEAAAEE 173
           KQAPGAGAGAA AQ DDDDD+VPDLV GQTFEAAAEE
Sbjct: 121 KQAPGAGAGAAAAQ-DDDDDEVPDLVAGQTFEAAAEE 156

[Close]

BLAST of CmoCh18G000690 vs. NCBI nr
Match: gi|1009133550|ref|XP_015883963.1| (PREDICTED: transcription factor BTF3 homolog 4-like [Ziziphus jujuba])

HSP 1 Score: 265.0 bits (676), Expect = 9.3e-68
Identity = 142/164 (86.59%), Postives = 149/164 (90.85%), Query Frame = 1


Query: 16  MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 75
           M+  KL KMAGAVRTGGKGS+RRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MNREKLMKMAGAVRTGGKGSMRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 76  KDDVVIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 135
           KDDVVIQF NPKVQASIAANTWVVSG+PQTKKLQDILP I+NQLGPDNLDNL+KLAEQFQ
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPSILNQLGPDNLDNLKKLAEQFQ 120

Query: 136 KQAPGAGAG---AANAQDDDDDDDVPDLVEGQTFEAAAEEKQAS 177
           KQAPGAGAG   AA    +DDDDDVPDLV GQTFEAAAEE  A+
Sbjct: 121 KQAPGAGAGDGAAAATAPEDDDDDVPDLVAGQTFEAAAEEGHAA 164

The following BLAST results are available for this feature:

BLAST of CmoCh18G000690 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BTF3L_ARATH	2.3e-66	83.54	Nascent polypeptide-associated complex subunit beta OS=Arabidopsis thaliana GN=A...	[more]
BTF3_ARATH	9.0e-63	81.01	Basic transcription factor 3 OS=Arabidopsis thaliana GN=BTF3 PE=1 SV=1	[more]
NACB_AJECN	1.3e-37	53.16	Nascent polypeptide-associated complex subunit beta OS=Ajellomyces capsulatus (s...	[more]
BT3L4_DANRE	1.9e-36	55.00	Transcription factor BTF3 homolog 4 OS=Danio rerio GN=btf3l4 PE=2 SV=1	[more]
NACB_PHANO	1.2e-35	51.90	Nascent polypeptide-associated complex subunit beta OS=Phaeosphaeria nodorum (st...	[more]

BLAST of CmoCh18G000690 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTU8_CUCSA	2.2e-76	91.81	Nascent polypeptide-associated complex subunit beta OS=Cucumis sativus GN=Csa_1G...	[more]
D7TXR6_VITVI	1.4e-70	92.99	Nascent polypeptide-associated complex subunit beta OS=Vitis vinifera GN=VIT_17s...	[more]
A0A0U4IR75_ZIZJJ	6.5e-68	86.59	Nascent polypeptide-associated complex subunit beta OS=Ziziphus jujuba GN=BTF3 P...	[more]
A0A067EXA0_CITSI	8.5e-68	89.24	Nascent polypeptide-associated complex subunit beta OS=Citrus sinensis GN=CISIN_...	[more]
V4TML2_9ROSI	8.5e-68	89.24	Nascent polypeptide-associated complex subunit beta OS=Citrus clementina GN=CICL...	[more]

BLAST of CmoCh18G000690 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G73230.1	1.3e-67	83.54	Nascent polypeptide-associated complex NAC	[more]
AT1G17880.1	5.1e-64	81.01	basic transcription factor 3	[more]

BLAST of CmoCh18G000690 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209106\|gb\|KGN64202.1\|	3.2e-76	91.81	hypothetical protein Csa_1G043055 [Cucumis sativus]	[more]
gi\|659066946\|ref\|XP_008467234.1\|	9.3e-76	94.55	PREDICTED: transcription factor BTF3 homolog 4-like [Cucumis melo]	[more]
gi\|449439495\|ref\|XP_004137521.1\|	1.6e-75	95.09	PREDICTED: transcription factor BTF3 homolog 4-like [Cucumis sativus]	[more]
gi\|225457458\|ref\|XP_002265041.1\|	2.0e-70	92.99	PREDICTED: transcription factor BTF3 homolog 4 [Vitis vinifera]	[more]
gi\|1009133550\|ref\|XP_015883963.1\|	9.3e-68	86.59	PREDICTED: transcription factor BTF3 homolog 4-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002715	Nas_poly-pep-assoc_cplx_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G000690.1	CmoCh18G000690.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002715	Nascent polypeptide-associated complex NAC domain	PFAM	PF01849	NAC	coord: 51..106 score: 3.5
IPR002715	Nascent polypeptide-associated complex NAC domain	SMART	SM01407	NAC_2	coord: 51..106 score: 2.4
IPR002715	Nascent polypeptide-associated complex NAC domain	PROFILE	PS51151	NAC_AB	coord: 48..112 score: 1
None	No IPR available	PANTHER	PTHR10351	TRANSCRIPTION FACTOR BTF3	coord: 16..174 score: 3.4E
None	No IPR available	PANTHER	PTHR10351:SF50	SUBFAMILY NOT NAMED	coord: 16..174 score: 3.4E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh18G000690	Cucsa.122190	Cucumber (Gy14) v1	cgycmoB0315
CmoCh18G000690	CmaCh13G009680	Cucurbita maxima (Rimu)	cmacmoB224
CmoCh18G000690	CmaCh18G000920	Cucurbita maxima (Rimu)	cmacmoB408
CmoCh18G000690	Cla008391	Watermelon (97103) v1	cmowmB371
CmoCh18G000690	MELO3C002159	Melon (DHL92) v3.5.1	cmomeB356
CmoCh18G000690	ClCG01G014900	Watermelon (Charleston Gray)	cmowcgB343
CmoCh18G000690	Lsi02G002620	Bottle gourd (USVL1VR-Ls)	cmolsiB356
CmoCh18G000690	Cp4.1LG09g11010	Cucurbita pepo (Zucchini)	cmocpeB377
CmoCh18G000690	Cp4.1LG20g01770	Cucurbita pepo (Zucchini)	cmocpeB404
CmoCh18G000690	MELO3C002159.2	Melon (DHL92) v3.6.1	cmomedB408
CmoCh18G000690	Cla97C01G013930	Watermelon (97103) v2	cmowmbB383
CmoCh18G000690	Bhi08G001103	Wax gourd	cmowgoB0516
CmoCh18G000690	CsGy1G007320	Cucumber (Gy14) v2	cgybcmoB082
CmoCh18G000690	Carg04871	Silver-seed gourd	carcmoB0527
CmoCh18G000690	Carg06647	Silver-seed gourd	carcmoB0673

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh18G000690	CmoCh13G010020	Cucurbita moschata (Rifu)	cmocmoB171

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh18G000690	Cucumber (Chinese Long) v3	cmocucB0457
CmoCh18G000690	Wild cucumber (PI 183967)	cmocpiB383
CmoCh18G000690	Cucumber (Chinese Long) v2	cmocuB380