Cp4.1LG09g11010 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG09g11010
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Nascent polypeptide-associated complex subunit beta
Location	Cp4.1LG09 : 9477625 .. 9482068 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAATCACAGCCGTTGGATCAGCCTATTTAAATAACATCGTATTCGGCGCGCCCTAATATATGATGCATTAGCGCCGTCCCAGACTGAGGCTATCCTCTTCCGCTTCGGGAACTCGATTCTAATAATCTTGAAGGTAACTCTTCCTTCCAGTTTAGCTTCACTTCTCATCGCTTTCTTGATCCTATGTGCTTCTTACTATTTTCGGATTGTTCTTCGACGATGAATATCCTCTTCTGAGTGTTCTATTGTTGCGCATTTTCATTTTATAGCTTTGGAGCCGGATTTTGTATTTTCTATTAAGGTGTTTGTCGATTTCATAGGTTGCTATGTCTTTGAAACTGATCGTCGTTGATTTTCTTATGTTAAACTTGCTTCTAATGTCTGATTTCTTACGACTTCACAGATCGTAATGTTAAATATATACTAGCGTTGATTGCATCCTTCGATTGTACGTTCAGAAATGAACAATGAAAAACCTAGGTTAGATGAATTAGTCGAACTGTAATTACAGTACGAGCAGAAGCTTACTTTTCACGAATGTTTTTCCGTCAAATGTTGACGGCCTCTCTAGGACAATCTCACTCATGTACTCTCTACGATGAATATGATGAAATGAATGGATAATTTGTAACTGAAAATATTTTTCGGATAAGCTTATGCCTCGATTTGCCTTTCTTGCGGATATCGTTATTGCTAATTGATTCTTCTGATAAGTTTTTTGTTTGATTTATAGTTATAAAAGATATGGCCGAGCACATGTATGCGTTAATCTGTTTTACCTCTCTTTTCTCCGTTGACTAATCTCTGTTTTTTTTTTAATTGCTCTTATTATACAAATCTCCGCGTCTTGTATTTTTTTTTTNATCGTAAGTCTTGTATTTGTTCCTATATTGTGCAGATGGATCATACCAAGCTCCAGAAGATGGCTGGTGCAGTTCGCACTGGAGGAAAAGGTAGCGTGAGAAGGTTAGTTTCATCTGCATCTTTTTGAAAGTTAATGAGTGTGTGAGAAGAGTTAGTTATCTGTTGGTTGGTTTACTTAATAAGGAGTTGGAAATGAATTCAACTGGAAATATGTATCTCTTAAAAGTTTTATCTGGATGTGCTTGATTATATTTTATTTGTTGGTGAGTAATTTCATTGAACCATGGTTTACGTAAAATAATATCATCCAACTGTAGACTTGGCATGATCCTAAGGATGAAGGTAACATGATATGTATACACCGTTCCCCCATCTACTTCTGATTTTCTCTGTTTTCTCATCCATCATTCTATTAGTTCTAATGGATTTCTTTATTGTAATCTGTGAAGTTTGCTTTTGATAGTAGTTCATTTTGATAATTTGATTTACAGCTATTGGTTTACCATTGACAACATATATGATTCTTCTTTATCGTACTACTTGGTTGAGTAATGGTTGAATTCACAAACATAAATTTCATGCTTGTTTGTGTATTGTATCGTTCATTTAAGCAGGTTGTTGTCTCTCGATATTTTCCCATGCTTTCTTAACAAAATTTTTTTGTTTTGCTGTTGAAATATCATTTTCATACTCTTTTTTTTTTTTCAAAGATCGTTTTTTTTTTCTCATTTTTTTTTAAATTTTCTTTATGTCTGTTGTCAATTGAAGGAAGAAGAAAGCTGTTCACAAGACAACTACCACAGATGATAAACGGCTTCAAAGTACCTTGAAGAGAATAGGAGTTAATGCCATTCCTGCTATTGAGGAAGTCAACATCTTCAAGGATGATGTAGTTATTCAATTTACCAACCCGAAAGGTAAAGCCACTCATCTACCCTTTGGCTCTTTACCATCTATATCTTGATACGTAATATATCTAATGTTTAGTTGTTTCTTGTTCTCTATTTCAGTTCAAGCTTCTATTGCAGCAAACACCTGGGTTGTTAGTGGTATAAACGGCTTCAAAGTACCTTGAAGAGAATAGGAGTTAATGCCATTCCTGCTATTGAGGAAGTCAACATCTTCAAGGATGATGTAGTTATTCAATTTACCAACCCGAAAGGTAAAGCCACTCATCTACCCTTTGGCTCTTTACCATCTATATCTTGATACGTAATATATCTAATGTTTAGTTGTTTCTTGTTCTCTATTTCAGTTCAAGCTTCTATTGCAGCAAACACCTGGGTTGTTAGTGGTACTCCTCAAACGAAAAGTAAGTCTCTCCCAACACTTCTTGAATAGAATTAAACATATAACTGATCTTGTGTCCTCAAGTCTAGGGGGATTCTTTGAGTAGTTCTCTAAAATGCAACACTTTCTGTTTTTCGCAAAATTGGTCATATAATTTTTAAAACACAAGAATAGCCTAAATGAAACATCGTATAGTTGTATCTGCTGTATTTTACTTAGCTATTCACTTCCAATTGTATAGTTCTGGTTTTTATCTTAAAAGCCTTGTTACTCTTTATTTCAAACCATTTCTAACTCAATGATGAATATTGCTTATCAAAAGTGTTCATAAGGAGTCGTTTTGGGAATGCTATATAAAAACAATTCAATTTGTTTACGAAATTTTTTTATTCTTTAAATAAGGGGAACTTAGTTGGACAGTGAAACGTTTGAAGCTGTAATGAAACGAGTTATTCTTGAGTAACTGTTAATTGGATGCAAACCTTCAAGTGTTTTTAGTTATGACGTTTTATTGTAATGCAATAAAATTGTGCGAGGGTTCTTAGGGATTAGGATTATATTGTTGAAAATTTTATCCAACCAGCATGTTCTCGTTGGCTTGGAATTCGTAATGCGTCATAATAGGGGGGTTTGCTCTAATTCTAATGGACTGTTCCACTATGTCCAGCATAGGAATACATCTGAGGCTAGGCTGATAAAGTATATTATTATGTTATGGTCTTGGTCCAAAGCTATCGTTTTAAATGGGGGGCAAGTAGTTCTACTTGAAACTGAATAATCTTTATAAATTGTAAAATAGTTGACCGTTGTTAAATTATGTCGTTCTTGACATTTACTTAAATTGCAACATTGACAATTGTAACATCTAATCTGACCCAATCTTATATGTATGCTGTGTAAATGAGCACCTTGTTTATTTGTCGTATAGATTTGTTCTTACCTAAAGCAAGTCCTAAAGATAAAAAAAATCTGTAACGTTTTGCTCAGGCAAGAAATTATGAAGACCCTTCTCTTAGTCCGACACCTTATACGGCTAGAAAACATGGGTTTTTGATGTCTATACCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGTTTCTAGTGATGGAGGAGACGGCATGTTTTTGTTGTGATATTTCGTTCTCTTGTTGATGCATGTCGTGGTTGGAACTTTTTATCTTATATGCCCACTTTAATAATTTGATTTCTTTTCACAGAATTGCAGGATATTCTCCCTGGAATTATCAACCAGTTGGGTTAGTATGCTAGTGTTTTCGTGTTTCCCGCTGTGTTGTAGATTTAGTAAAAGATCGAACACTGACTGAATTCACATGTAAATATTTTAGGACCTGATAACCTGGACAATCTGAGGAAGTTGGCTGAGCAGTTCCAGAAGCAAGCACCTGGGGCAGGTGCTGGTGCAGCCAATGCACAGGATGACGATGATGACGACGATGTTCCCGACCTCGTTGAAGGACAGACTTTCGAAGCTGCTGCAGAAGAGAAGCAAGCTTCCTAGAGAGGATCAATCTCTTGGGATGATTTTGTTTAGTTTTTACATATTTTTAATGTTTGGAAGAGTCCTTTTTTCTCCTTGTATTTGTTTTTGCTAAATCTTGTTTCCCATGGCATTTTACTCGCTCCACCCTCTTGTAACCCCTGGAAGGATGGATTGGATTGGATTGGATTTTCTATTACCCCACCCTCCTTCAACAGCCTTACTTCCTTGGGAACACTCTTTTTATATATAGGCGCTGAATTAATGACCTCTTCCATCCGCCCAATCCAACGAAAAATCTGGGGATCGAACATGAGCCAGCTTTGTACGCAGATATGTTAAGGTATTCATGTCAATTACTTCTTTCACCTAAGTTCTCATACCATTATTGTAGCGCATTTTAGTCATTATTCTAGAATTTTTGAGTTAAAAGCTAACGAGGAAAAATCTATCAATCCACTATTTTAACTTTATGGTTACAGAATCATAGAATGATGAGGGAAAAAATAACGCAAGTTAATGTAGGGTATAAAGGGAAGAAAATATTCATGCAATCTGCACTTCTGGGGATTGATCACGTGCTCACGCCTTTTTCCGA

mRNA sequence

TAAATCACAGCCGTTGGATCAGCCTATTTAAATAACATCGTATTCGGCGCGCCCTAATATATGATGCATTAGCGCCGTCCCAGACTGAGGCTATCCTCTTCCGCTTCGGGAACTCGATTCTAATAATCTTGAAGATGGATCATACCAAGCTCCAGAAGATGGCTGGTGCAGTTCGCACTGGAGGAAAAGGTAGCGTGAGAAGGAAGAAGAAAGCTGTTCACAAGACAACTACCACAGATGATAAACGGCTTCAAAGTACCTTGAAGAGAATAGGAGTTAATGCCATTCCTGCTATTGAGGAAGTCAACATCTTCAAGGATGATGTAGTTATTCAATTTACCAACCCGAAAGTTCAAGCTTCTATTGCAGCAAACACCTGGGTTGTTAGTGGTATAAACGGCTTCAAAAGAATAGGAGTTAATGCCATTCCTGCTATTGAGGAAGTCAACATCTTCAAGGATGATGTAGTTATTCAATTTACCAACCCGAAAGTTCAAGCTTCTATTGCAGCAAACACCTGGGTTGTTAGTGGTACTCCTCAAACGAAAAAATTGCAGGATATTCTCCCTGGAATTATCAACCAGTTGGGACCTGATAACCTGGACAATCTGAGGAAGTTGGCTGAGCAGTTCCAGAAGCAAGCACCTGGGGCAGGTGCTGGTGCAGCCAATGCACAGGATGACGATGATGACGACGATGTTCCCGACCTCGTTGAAGGACAGACTTTCGAAGCTGCTGCAGAAGAGAAGCAAGCTTCCTAGAGAGGATCAATCTCTTGGGATGATTTTGTTTAGTTTTTACATATTTTTAATGTTTGGAAGAGTCCTTTTTTCTCCTTGTATTTGTTTTTGCTAAATCTTGTTTCCCATGGCATTTTACTCGCTCCACCCTCTTGTAACCCCTGGAAGGATGGATTGGATTGGATTGGATTTTCTATTACCCCACCCTCCTTCAACAGCCTTACTTCCTTGGGAACACTCTTTTTATATATAGGCGCTGAATTAATGACCTCTTCCATCCGCCCAATCCAACGAAAAATCTGGGGATCGAACATGAGCCAGCTTTGTACGCAGATATGTTAAGGTATTCATGTCAATTACTTCTTTCACCTAAGTTCTCATACCATTATTGTAGCGCATTTTAGTCATTATTCTAGAATTTTTGAGTTAAAAGCTAACGAGGAAAAATCTATCAATCCACTATTTTAACTTTATGGTTACAGAATCATAGAATGATGAGGGAAAAAATAACGCAAGTTAATGTAGGGTATAAAGGGAAGAAAATATTCATGCAATCTGCACTTCTGGGGATTGATCACGTGCTCACGCCTTTTTCCGA

Coding sequence (CDS)

ATGGATCATACCAAGCTCCAGAAGATGGCTGGTGCAGTTCGCACTGGAGGAAAAGGTAGCGTGAGAAGGAAGAAGAAAGCTGTTCACAAGACAACTACCACAGATGATAAACGGCTTCAAAGTACCTTGAAGAGAATAGGAGTTAATGCCATTCCTGCTATTGAGGAAGTCAACATCTTCAAGGATGATGTAGTTATTCAATTTACCAACCCGAAAGTTCAAGCTTCTATTGCAGCAAACACCTGGGTTGTTAGTGGTATAAACGGCTTCAAAAGAATAGGAGTTAATGCCATTCCTGCTATTGAGGAAGTCAACATCTTCAAGGATGATGTAGTTATTCAATTTACCAACCCGAAAGTTCAAGCTTCTATTGCAGCAAACACCTGGGTTGTTAGTGGTACTCCTCAAACGAAAAAATTGCAGGATATTCTCCCTGGAATTATCAACCAGTTGGGACCTGATAACCTGGACAATCTGAGGAAGTTGGCTGAGCAGTTCCAGAAGCAAGCACCTGGGGCAGGTGCTGGTGCAGCCAATGCACAGGATGACGATGATGACGACGATGTTCCCGACCTCGTTGAAGGACAGACTTTCGAAGCTGCTGCAGAAGAGAAGCAAGCTTCCTAG

Protein sequence

MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFTNPKVQASIAANTWVVSGINGFKRIGVNAIPAIEEVNIFKDDVVIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPGAGAGAANAQDDDDDDDVPDLVEGQTFEAAAEEKQAS

Homology

[Close]

BLAST of Cp4.1LG09g11010 vs. Swiss-Prot
Match: BTF3L_ARATH (Nascent polypeptide-associated complex subunit beta OS=Arabidopsis thaliana GN=At1g73230 PE=2 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.1e-46
Identity = 96/115 (83.48%), Postives = 104/115 (90.43%), Query Frame = 1


Query: 91  KRIGVNAIPAIEEVNIFKDDVVIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQ 150
           KR+GVN+IPAIEEVNIFKDDVVIQF NPKVQASIAANTWVVSGTPQTKKLQDILP II+Q
Sbjct: 44  KRVGVNSIPAIEEVNIFKDDVVIQFINPKVQASIAANTWVVSGTPQTKKLQDILPQIISQ 103

Query: 151 LGPDNLDNLRKLAEQFQKQAPGAGAGAANAQDDDDDDDVPDLVEGQTFEAAAEEK 206
           LGPDNLDNL+KLAEQFQKQAPGAG   A  Q++DDDDDVPDLV G+TFE  A E+
Sbjct: 104 LGPDNLDNLKKLAEQFQKQAPGAGDVPATIQEEDDDDDVPDLVVGETFETPATEE 158

[Close]

BLAST of Cp4.1LG09g11010 vs. Swiss-Prot
Match: BTF3_ARATH (Basic transcription factor 3 OS=Arabidopsis thaliana GN=BTF3 PE=1 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.1e-43
Identity = 93/115 (80.87%), Postives = 103/115 (89.57%), Query Frame = 1


Query: 91  KRIGVNAIPAIEEVNIFKDDVVIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQ 150
           KRIGVN+IPAIEEVNIFKDDVVIQF NPKVQASIAANTWVVSG+PQTKKLQDILP II+Q
Sbjct: 44  KRIGVNSIPAIEEVNIFKDDVVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPQIISQ 103

Query: 151 LGPDNLDNLRKLAEQFQKQAPGAGAGAANAQDDDDDDDVPDLVEGQTFEAAAEEK 206
           LGPDN+DNL+KLAEQFQKQA G G  A+    ++DDDDVP+LV G+TFE AAEEK
Sbjct: 104 LGPDNMDNLKKLAEQFQKQASGEGNAASATIQEEDDDDVPELV-GETFETAAEEK 157

[Close]

BLAST of Cp4.1LG09g11010 vs. Swiss-Prot
Match: BTF3_HUMAN (Transcription factor BTF3 OS=Homo sapiens GN=BTF3 PE=1 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 6.1e-26
Identity = 82/206 (39.81%), Postives = 111/206 (53.88%), Query Frame = 1


Query: 1   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+  KL K+   VR GGKG+ RRKKK VH+T T                           
Sbjct: 50  MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTAT--------------------------- 109

Query: 61  KDDVVIQFTNPKVQASIAANTWVVSGINGFKRIGVNAIPAIEEVNIFKDD-VVIQFTNPK 120
            DD  +QF+                     K++GVN I  IEEVN+F +   VI F NPK
Sbjct: 110 ADDKKLQFS--------------------LKKLGVNNISGIEEVNMFTNQGTVIHFNNPK 169

Query: 121 VQASIAANTWVVSGTPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPGAGAGAAN 180
           VQAS+AANT+ ++G  +TK+L ++LP I+NQLG D+L +LR+LAE   KQ+    A  A 
Sbjct: 170 VQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAPLAT 204

Query: 181 AQDDDDDDDVPDLVEGQTFEAAAEEK 206
              +DDDD+VPDLVE   F+ A++ +
Sbjct: 230 G--EDDDDEVPDLVE--NFDEASKNE 204

[Close]

BLAST of Cp4.1LG09g11010 vs. Swiss-Prot
Match: BTF3_MOUSE (Transcription factor BTF3 OS=Mus musculus GN=Btf3 PE=1 SV=3)

HSP 1 Score: 119.0 bits (297), Expect = 6.1e-26
Identity = 82/206 (39.81%), Postives = 111/206 (53.88%), Query Frame = 1


Query: 1   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+  KL K+   VR GGKG+ RRKKK VH+T T                           
Sbjct: 48  MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTAT--------------------------- 107

Query: 61  KDDVVIQFTNPKVQASIAANTWVVSGINGFKRIGVNAIPAIEEVNIFKDD-VVIQFTNPK 120
            DD  +QF+                     K++GVN I  IEEVN+F +   VI F NPK
Sbjct: 108 ADDKKLQFS--------------------LKKLGVNNISGIEEVNMFTNQGTVIHFNNPK 167

Query: 121 VQASIAANTWVVSGTPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPGAGAGAAN 180
           VQAS+AANT+ ++G  +TK+L ++LP I+NQLG D+L +LR+LAE   KQ+    A  A 
Sbjct: 168 VQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAPLAT 202

Query: 181 AQDDDDDDDVPDLVEGQTFEAAAEEK 206
              +DDDD+VPDLVE   F+ A++ +
Sbjct: 228 G--EDDDDEVPDLVE--NFDEASKNE 202

[Close]

BLAST of Cp4.1LG09g11010 vs. Swiss-Prot
Match: NACB_AJECN (Nascent polypeptide-associated complex subunit beta OS=Ajellomyces capsulatus (strain NAm1 / WU24) GN=EGD1 PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 8.0e-26
Identity = 60/114 (52.63%), Postives = 81/114 (71.05%), Query Frame = 1


Query: 91  KRIGVNAIPAIEEVNIFKDDV-VIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIIN 150
           K++ V  I AIEEVN+FK+D  VI F  PKV AS+ +NT+ + G  + K+L +++PGI+N
Sbjct: 45  KKLNVQPIQAIEEVNMFKEDGNVIHFAAPKVHASVPSNTFAIYGNGEDKELTELVPGILN 104

Query: 151 QLGPDNLDNLRKLAEQFQKQAPGAGAGAANAQDDDDDDDVPDLVEGQTFEAAAE 204
           QLGPD+L +LRKLAE +Q    G G   A   DDDDDD++PDLVEG+ FE+  E
Sbjct: 105 QLGPDSLASLRKLAESYQSMQKGEGGEDAKKDDDDDDDEIPDLVEGENFESKVE 158

[Close]

BLAST of Cp4.1LG09g11010 vs. TrEMBL
Match: A0A0A0LTU8_CUCSA (Nascent polypeptide-associated complex subunit beta OS=Cucumis sativus GN=Csa_1G043055 PE=3 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 7.7e-52
Identity = 112/120 (93.33%), Postives = 114/120 (95.00%), Query Frame = 1


Query: 91  KRIGVNAIPAIEEVNIFKDDVVIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQ 150
           KRIGVNAIPAIEEVNIFKDDVVIQFTNPKVQASIAANTWVVSG+PQTKKLQDILPGIINQ
Sbjct: 120 KRIGVNAIPAIEEVNIFKDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQ 179

Query: 151 LGPDNLDNLRKLAEQFQKQAPGAGAG--AANAQDDDDDDDVPDLVEGQTFEAAAEEKQAS 209
           LGPDNLDNLRKLAEQFQKQAPG GAG  AA A  +DDDDDVPDLVEGQTFEAAAEEKQAS
Sbjct: 180 LGPDNLDNLRKLAEQFQKQAPGVGAGAAAAAANGEDDDDDVPDLVEGQTFEAAAEEKQAS 239

[Close]

BLAST of Cp4.1LG09g11010 vs. TrEMBL
Match: D7TXR6_VITVI (Nascent polypeptide-associated complex subunit beta OS=Vitis vinifera GN=VIT_17s0053g00620 PE=3 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 7.2e-50
Identity = 108/114 (94.74%), Postives = 110/114 (96.49%), Query Frame = 1


Query: 91  KRIGVNAIPAIEEVNIFKDDVVIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQ 150
           KRIGVNAIPAIEEVNIFKDDVVIQF NPKVQASIAANTWVVSG+PQTKKLQDILPGIINQ
Sbjct: 44  KRIGVNAIPAIEEVNIFKDDVVIQFLNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQ 103

Query: 151 LGPDNLDNLRKLAEQFQKQAPGAGAGAANAQDDDDDDDVPDLVEGQTFEAAAEE 205
           LGPDNLDNLRKLAEQFQKQAPGAGAGAA AQ DDDDD+VPDLV GQTFEAAAEE
Sbjct: 104 LGPDNLDNLRKLAEQFQKQAPGAGAGAAAAQ-DDDDDEVPDLVAGQTFEAAAEE 156

[Close]

BLAST of Cp4.1LG09g11010 vs. TrEMBL
Match: A0A166G8W8_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_001214 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 8.0e-49
Identity = 104/118 (88.14%), Postives = 110/118 (93.22%), Query Frame = 1


Query: 91  KRIGVNAIPAIEEVNIFKDDVVIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQ 150
           KRIGVNAIPAIEEVNIFKDDVVIQF NPKVQASIAANTWVVSG+PQTKKLQDILPGIINQ
Sbjct: 36  KRIGVNAIPAIEEVNIFKDDVVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPGIINQ 95

Query: 151 LGPDNLDNLRKLAEQFQKQAPGAGAGAANAQDDDDDDDVPDLVEGQTFEAAAEEKQAS 209
           LGPDNLDNLRKLAEQFQKQAPGA AGAA AQ+DDD+D+VP+LV G+TFEA AEE   S
Sbjct: 96  LGPDNLDNLRKLAEQFQKQAPGAEAGAAAAQEDDDEDEVPELVPGETFEAVAEETPTS 153

[Close]

BLAST of Cp4.1LG09g11010 vs. TrEMBL
Match: A0A0U4IR75_ZIZJJ (Nascent polypeptide-associated complex subunit beta OS=Ziziphus jujuba GN=BTF3 PE=2 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 3.4e-47
Identity = 104/121 (85.95%), Postives = 109/121 (90.08%), Query Frame = 1


Query: 91  KRIGVNAIPAIEEVNIFKDDVVIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQ 150
           KRIGVNAIPAIEEVNIFKDDVVIQF NPKVQASIAANTWVVSG+PQTKKLQDILP I+NQ
Sbjct: 44  KRIGVNAIPAIEEVNIFKDDVVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPSILNQ 103

Query: 151 LGPDNLDNLRKLAEQFQKQAPGAGAG---AANAQDDDDDDDVPDLVEGQTFEAAAEEKQA 209
           LGPDNLDNL+KLAEQFQKQAPGAGAG   AA    +DDDDDVPDLV GQTFEAAAEE  A
Sbjct: 104 LGPDNLDNLKKLAEQFQKQAPGAGAGDGAAAATAPEDDDDDVPDLVAGQTFEAAAEEGHA 163

[Close]

BLAST of Cp4.1LG09g11010 vs. TrEMBL
Match: A0A067EXA0_CITSI (Nascent polypeptide-associated complex subunit beta OS=Citrus sinensis GN=CISIN_1g031135mg PE=3 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 4.4e-47
Identity = 102/115 (88.70%), Postives = 106/115 (92.17%), Query Frame = 1


Query: 91  KRIGVNAIPAIEEVNIFKDDVVIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQ 150
           KRIGVNAIPAIEEVNIFKDDVVIQF NPKVQASIAANTWVVSG PQTKKLQDILPGIINQ
Sbjct: 44  KRIGVNAIPAIEEVNIFKDDVVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQ 103

Query: 151 LGPDNLDNLRKLAEQFQKQAPGAGAGAANAQDDDDDDDVPDLVEGQTFEAAAEEK 206
           LGPDNLDNLRKLAEQFQKQAP AG GA   Q +DDDD+VP+LV G+TFEAAAEEK
Sbjct: 104 LGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQ-EDDDDEVPELVAGETFEAAAEEK 157

[Close]

BLAST of Cp4.1LG09g11010 vs. TAIR10
Match: AT1G73230.1 (AT1G73230.1 Nascent polypeptide-associated complex NAC)

HSP 1 Score: 188.0 bits (476), Expect = 6.0e-48
Identity = 96/115 (83.48%), Postives = 104/115 (90.43%), Query Frame = 1


Query: 91  KRIGVNAIPAIEEVNIFKDDVVIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQ 150
           KR+GVN+IPAIEEVNIFKDDVVIQF NPKVQASIAANTWVVSGTPQTKKLQDILP II+Q
Sbjct: 44  KRVGVNSIPAIEEVNIFKDDVVIQFINPKVQASIAANTWVVSGTPQTKKLQDILPQIISQ 103

Query: 151 LGPDNLDNLRKLAEQFQKQAPGAGAGAANAQDDDDDDDVPDLVEGQTFEAAAEEK 206
           LGPDNLDNL+KLAEQFQKQAPGAG   A  Q++DDDDDVPDLV G+TFE  A E+
Sbjct: 104 LGPDNLDNLKKLAEQFQKQAPGAGDVPATIQEEDDDDDVPDLVVGETFETPATEE 158

[Close]

BLAST of Cp4.1LG09g11010 vs. TAIR10
Match: AT1G17880.1 (AT1G17880.1 basic transcription factor 3)

HSP 1 Score: 177.9 bits (450), Expect = 6.3e-45
Identity = 93/115 (80.87%), Postives = 103/115 (89.57%), Query Frame = 1


Query: 91  KRIGVNAIPAIEEVNIFKDDVVIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQ 150
           KRIGVN+IPAIEEVNIFKDDVVIQF NPKVQASIAANTWVVSG+PQTKKLQDILP II+Q
Sbjct: 44  KRIGVNSIPAIEEVNIFKDDVVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPQIISQ 103

Query: 151 LGPDNLDNLRKLAEQFQKQAPGAGAGAANAQDDDDDDDVPDLVEGQTFEAAAEEK 206
           LGPDN+DNL+KLAEQFQKQA G G  A+    ++DDDDVP+LV G+TFE AAEEK
Sbjct: 104 LGPDNMDNLKKLAEQFQKQASGEGNAASATIQEEDDDDVPELV-GETFETAAEEK 157

[Close]

BLAST of Cp4.1LG09g11010 vs. NCBI nr
Match: gi|659066946|ref|XP_008467234.1| (PREDICTED: transcription factor BTF3 homolog 4-like [Cucumis melo])

HSP 1 Score: 212.6 bits (540), Expect = 6.5e-52
Identity = 113/122 (92.62%), Postives = 115/122 (94.26%), Query Frame = 1


Query: 91  KRIGVNAIPAIEEVNIFKDDVVIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQ 150
           KRIGVNAIPAIEEVNIFKDDVVIQFTNPKVQASIAANTWVVSG+PQTKKLQDILPGIINQ
Sbjct: 44  KRIGVNAIPAIEEVNIFKDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQ 103

Query: 151 LGPDNLDNLRKLAEQFQKQAPGAGAG----AANAQDDDDDDDVPDLVEGQTFEAAAEEKQ 209
           LGPDNLDNLRKLAEQFQKQAPGAGAG    AA A  +DDDDDVPDLVEGQTFEAAAEEKQ
Sbjct: 104 LGPDNLDNLRKLAEQFQKQAPGAGAGAAAAAAAANGEDDDDDVPDLVEGQTFEAAAEEKQ 163

[Close]

BLAST of Cp4.1LG09g11010 vs. NCBI nr
Match: gi|449439495|ref|XP_004137521.1| (PREDICTED: transcription factor BTF3 homolog 4-like [Cucumis sativus])

HSP 1 Score: 211.8 bits (538), Expect = 1.1e-51
Identity = 112/120 (93.33%), Postives = 114/120 (95.00%), Query Frame = 1


Query: 91  KRIGVNAIPAIEEVNIFKDDVVIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQ 150
           KRIGVNAIPAIEEVNIFKDDVVIQFTNPKVQASIAANTWVVSG+PQTKKLQDILPGIINQ
Sbjct: 44  KRIGVNAIPAIEEVNIFKDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQ 103

Query: 151 LGPDNLDNLRKLAEQFQKQAPGAGAG--AANAQDDDDDDDVPDLVEGQTFEAAAEEKQAS 209
           LGPDNLDNLRKLAEQFQKQAPG GAG  AA A  +DDDDDVPDLVEGQTFEAAAEEKQAS
Sbjct: 104 LGPDNLDNLRKLAEQFQKQAPGVGAGAAAAAANGEDDDDDVPDLVEGQTFEAAAEEKQAS 163

[Close]

BLAST of Cp4.1LG09g11010 vs. NCBI nr
Match: gi|700209106|gb|KGN64202.1| (hypothetical protein Csa_1G043055 [Cucumis sativus])

HSP 1 Score: 211.8 bits (538), Expect = 1.1e-51
Identity = 112/120 (93.33%), Postives = 114/120 (95.00%), Query Frame = 1


Query: 91  KRIGVNAIPAIEEVNIFKDDVVIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQ 150
           KRIGVNAIPAIEEVNIFKDDVVIQFTNPKVQASIAANTWVVSG+PQTKKLQDILPGIINQ
Sbjct: 120 KRIGVNAIPAIEEVNIFKDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQ 179

Query: 151 LGPDNLDNLRKLAEQFQKQAPGAGAG--AANAQDDDDDDDVPDLVEGQTFEAAAEEKQAS 209
           LGPDNLDNLRKLAEQFQKQAPG GAG  AA A  +DDDDDVPDLVEGQTFEAAAEEKQAS
Sbjct: 180 LGPDNLDNLRKLAEQFQKQAPGVGAGAAAAAANGEDDDDDVPDLVEGQTFEAAAEEKQAS 239

[Close]

BLAST of Cp4.1LG09g11010 vs. NCBI nr
Match: gi|225457458|ref|XP_002265041.1| (PREDICTED: transcription factor BTF3 homolog 4 [Vitis vinifera])

HSP 1 Score: 205.3 bits (521), Expect = 1.0e-49
Identity = 108/114 (94.74%), Postives = 110/114 (96.49%), Query Frame = 1


Query: 91  KRIGVNAIPAIEEVNIFKDDVVIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQ 150
           KRIGVNAIPAIEEVNIFKDDVVIQF NPKVQASIAANTWVVSG+PQTKKLQDILPGIINQ
Sbjct: 44  KRIGVNAIPAIEEVNIFKDDVVIQFLNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQ 103

Query: 151 LGPDNLDNLRKLAEQFQKQAPGAGAGAANAQDDDDDDDVPDLVEGQTFEAAAEE 205
           LGPDNLDNLRKLAEQFQKQAPGAGAGAA AQ DDDDD+VPDLV GQTFEAAAEE
Sbjct: 104 LGPDNLDNLRKLAEQFQKQAPGAGAGAAAAQ-DDDDDEVPDLVAGQTFEAAAEE 156

[Close]

BLAST of Cp4.1LG09g11010 vs. NCBI nr
Match: gi|1021050906|gb|KZN08684.1| (hypothetical protein DCAR_001214 [Daucus carota subsp. sativus])

HSP 1 Score: 201.8 bits (512), Expect = 1.1e-48
Identity = 104/118 (88.14%), Postives = 110/118 (93.22%), Query Frame = 1


Query: 91  KRIGVNAIPAIEEVNIFKDDVVIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQ 150
           KRIGVNAIPAIEEVNIFKDDVVIQF NPKVQASIAANTWVVSG+PQTKKLQDILPGIINQ
Sbjct: 36  KRIGVNAIPAIEEVNIFKDDVVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPGIINQ 95

Query: 151 LGPDNLDNLRKLAEQFQKQAPGAGAGAANAQDDDDDDDVPDLVEGQTFEAAAEEKQAS 209
           LGPDNLDNLRKLAEQFQKQAPGA AGAA AQ+DDD+D+VP+LV G+TFEA AEE   S
Sbjct: 96  LGPDNLDNLRKLAEQFQKQAPGAEAGAAAAQEDDDEDEVPELVPGETFEAVAEETPTS 153

The following BLAST results are available for this feature:

BLAST of Cp4.1LG09g11010 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BTF3L_ARATH	1.1e-46	83.48	Nascent polypeptide-associated complex subunit beta OS=Arabidopsis thaliana GN=A...	[more]
BTF3_ARATH	1.1e-43	80.87	Basic transcription factor 3 OS=Arabidopsis thaliana GN=BTF3 PE=1 SV=1	[more]
BTF3_HUMAN	6.1e-26	39.81	Transcription factor BTF3 OS=Homo sapiens GN=BTF3 PE=1 SV=1	[more]
BTF3_MOUSE	6.1e-26	39.81	Transcription factor BTF3 OS=Mus musculus GN=Btf3 PE=1 SV=3	[more]
NACB_AJECN	8.0e-26	52.63	Nascent polypeptide-associated complex subunit beta OS=Ajellomyces capsulatus (s...	[more]

BLAST of Cp4.1LG09g11010 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTU8_CUCSA	7.7e-52	93.33	Nascent polypeptide-associated complex subunit beta OS=Cucumis sativus GN=Csa_1G...	[more]
D7TXR6_VITVI	7.2e-50	94.74	Nascent polypeptide-associated complex subunit beta OS=Vitis vinifera GN=VIT_17s...	[more]
A0A166G8W8_DAUCA	8.0e-49	88.14	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_001214 PE=4 SV=1	[more]
A0A0U4IR75_ZIZJJ	3.4e-47	85.95	Nascent polypeptide-associated complex subunit beta OS=Ziziphus jujuba GN=BTF3 P...	[more]
A0A067EXA0_CITSI	4.4e-47	88.70	Nascent polypeptide-associated complex subunit beta OS=Citrus sinensis GN=CISIN_...	[more]

BLAST of Cp4.1LG09g11010 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G73230.1	6.0e-48	83.48	Nascent polypeptide-associated complex NAC	[more]
AT1G17880.1	6.3e-45	80.87	basic transcription factor 3	[more]

BLAST of Cp4.1LG09g11010 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659066946\|ref\|XP_008467234.1\|	6.5e-52	92.62	PREDICTED: transcription factor BTF3 homolog 4-like [Cucumis melo]	[more]
gi\|449439495\|ref\|XP_004137521.1\|	1.1e-51	93.33	PREDICTED: transcription factor BTF3 homolog 4-like [Cucumis sativus]	[more]
gi\|700209106\|gb\|KGN64202.1\|	1.1e-51	93.33	hypothetical protein Csa_1G043055 [Cucumis sativus]	[more]
gi\|225457458\|ref\|XP_002265041.1\|	1.0e-49	94.74	PREDICTED: transcription factor BTF3 homolog 4 [Vitis vinifera]	[more]
gi\|1021050906\|gb\|KZN08684.1\|	1.1e-48	88.14	hypothetical protein DCAR_001214 [Daucus carota subsp. sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002715	Nas_poly-pep-assoc_cplx_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG09g11010.1	Cp4.1LG09g11010.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002715	Nascent polypeptide-associated complex NAC domain	PFAM	PF01849	NAC	coord: 36..86 score: 4.5E-18coord: 91..138 score: 2.4
IPR002715	Nascent polypeptide-associated complex NAC domain	SMART	SM01407	NAC_2	coord: 92..138 score: 2.0E-12coord: 36..91 score: 7.1
IPR002715	Nascent polypeptide-associated complex NAC domain	PROFILE	PS51151	NAC_AB	coord: 33..97 score: 14.198coord: 93..144 score: 9
None	No IPR available	PANTHER	PTHR10351	TRANSCRIPTION FACTOR BTF3	coord: 133..206 score: 9.6E-103coord: 1..85 score: 9.6E
None	No IPR available	PANTHER	PTHR10351:SF50	SUBFAMILY NOT NAMED	coord: 133..206 score: 9.6E-103coord: 1..85 score: 9.6E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG09g11010	Cucsa.122190	Cucumber (Gy14) v1	cgycpeB0306
Cp4.1LG09g11010	CmaCh13G009680	Cucurbita maxima (Rimu)	cmacpeB213
Cp4.1LG09g11010	CmaCh18G000920	Cucurbita maxima (Rimu)	cmacpeB416
Cp4.1LG09g11010	CmoCh13G010020	Cucurbita moschata (Rifu)	cmocpeB183
Cp4.1LG09g11010	CmoCh18G000690	Cucurbita moschata (Rifu)	cmocpeB377
Cp4.1LG09g11010	Cla008391	Watermelon (97103) v1	cpewmB038
Cp4.1LG09g11010	MELO3C002159	Melon (DHL92) v3.5.1	cpemeB026
Cp4.1LG09g11010	ClCG01G014900	Watermelon (Charleston Gray)	cpewcgB021
Cp4.1LG09g11010	Lsi02G002620	Bottle gourd (USVL1VR-Ls)	cpelsiB026
Cp4.1LG09g11010	MELO3C002159.2	Melon (DHL92) v3.6.1	cpemedB031
Cp4.1LG09g11010	Bhi08G001103	Wax gourd	cpewgoB0045
Cp4.1LG09g11010	CsGy1G007320	Cucumber (Gy14) v2	cgybcpeB018
Cp4.1LG09g11010	Carg04871	Silver-seed gourd	carcpeB0539
Cp4.1LG09g11010	Carg06647	Silver-seed gourd	carcpeB0694

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG09g11010	Cp4.1LG20g01770	Cucurbita pepo (Zucchini)	cpecpeB049

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG09g11010	Cucumber (Chinese Long) v3	cpecucB0031
Cp4.1LG09g11010	Wild cucumber (PI 183967)	cpecpiB025
Cp4.1LG09g11010	Cucumber (Chinese Long) v2	cpecuB029