Cp4.1LG14g04600 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG14g04600
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Tubulin alpha-6 chain, putative
Location	Cp4.1LG14 : 1459828 .. 1465819 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTATACGCTTTTATTCCTCGCCTCCGCTTGTATCTCATTTTATTTTGTTGTTTTCTGAAAACTGAGATGAAGCTATTTCTCCCATTGAATTCACTGGGAGAAAGAAAGCTCTAGCTACCCGAGCTATGGCTGTTCTGCAAATTCTTAAATCAACTGTCTCTCCTCCTTCAATCTCTCAGCCGAAGTTTGGCTCTCAATCAAGCCGGTTCTTCTTGGAGTTGGATTCCACTAGGAGGTTTGTACTGCTCCATGGCCGTCGGAGGAGTTTGCGATATGGCTGCGTTCGTAGAAGGTTGAGTTTCCGTTGTGCTGCTCAGGATTCTGATAAGGAAAGCAACGGCAAGTTTTGACCGCTCTTCTTCTTCTTCTTCTTCTTTTGTTTCTGCTTCTGCTTTTTGCGGTCTTCTTTTTCTCATTTGTTTTTCTTTCTCAGCGCATTTTCTTGATGATTTGTTGTTCGTTGTTGTAGACTTCGTCTTGTAATATTGAAAGCGAGAGATGGAGAGGCAACTAGTTAACTGGCTTAGATGAGGCAATAGTTACTGATGTGGTTTTATTCCGATAGTTTGTCATTCTTAGTCCTAAACTATCTCTCTTTGTAGACAATCGTGTGAGAATCCATCCGGCTATTCGTCCGTCATTCCTGGTTTATCTCTCTCAATGTGTTTGCCTCGCTCGGATTTCTTCATGAATTCATGTTCGTCATAATTGACTTAAACGAGATAGAGAGACGGTATGCAGCCTAATCCTTCGATGAGGCCGAAGTTGCATGGTGTAGTTTGCAGCTCAGTTGGTCCGTCGCTTCTGAATTATCTTCTTCTGTTGACAGTAGCTCAATCACGTCGCAAAATCGTGAGAGATGAGATTCATCCAGCTATTCGTTTCTCATTCCTTAATTCTCTTACTCAGTGCATTTGCCTTGTTCGGATGTCTTGATGAAATGATGTTCGTGTTTGTTAGTTGTTTTCATAGCGAGAAATAGAGACGCAAATGCACCGAGAGAGATAATTCGGGAATGATGAACGAATATTGGATGAAACTCGCATGATTTTACTCGTTGATTGTGCTGCAGTCAACAGAGTAAGATAGTAGATGTTCACTATCGTAGACATCTTCTTGCTTAAGAGAGGCAGAAGTTGTATGTTGTAGTTTGTTGTTGAGATGGTCCGTCATTCCTCAGTTATCTTGCTCTGTAGAAAGTAGCGCAATCATGTAGCAAAACTGTGCAGTATCCATCAAGCTATTTGAGTAAACGAGTGATGGAAAATGCTTGCGGCTGCAAACGAAGATCACTTAGTTGGCCGTCCAGTTCTTTTTAGAGATTTATTCTTGAGTCAATATAGGCATGGCGACGAAGATGAAATTAAATAGGAATTTGAAAATTTAAGTTAAGAAACGTTTTCTTAGAAAAATTTAGAGGACGAAAGTAGAATTTTGGTTGTTCAGACAGAGAACACTTGGCTGACGGATAAAACCTTCATTCCTATCAATATCAGGATTAACCATCACCTGAATCTACAATCCTAAATTTGTATTGGTCCAATTTTTATAGTCGAAGCTTTGAAGAAGCGACAAGTCTGTGCCAAGCCAACAGGAGTATTAGCTGGCCATGCTTGTTTAGATTGTTTGAACAGCTTTCGCATAGGGCTGATTGCTCCTTTAAGAGACGTTTACGTTTCGTATGTTTGAGTTTTCTTCAGCTTGTGTAACAATGGCGTGGTTAGCTTTGGCCCTCCAATGTGAAGGCCCAGAACGCCTTCAAGCTTATTTTCCTAGCCAGTCACTTTTGTATGCACCATCTTCCTACTACGTTCACATCTGGCCTTTCTTTTCTTGGTCCATTATAGAAGAACTTTTACTTATTGAACCCACTTCTTGACTATGTGAAGAAAGAGGTTCGATGGAGCAGCAGTGGATGTTGGGGGTTGTCTCGAATTCCCATCGACGTTTTTTCTTACCCTCCTCAACGAGGTATTGAAAAAAAATGTCTAATAGCTCGCATATGTTAGTGCTATACCTGGATGGAATTTTCGAGATTTGTTGGCTCATAGCCTAGAAGCTTAGGTTCTGGTGGCGGGTGGGCAAGCCCATCAAGCAAAGCTTTTAGCGTTCATCTGATTAGATGTTCCAACCAAGTTTGTATCTGCGTCACAGTTATCTCTAATAGTAGGTCTTAGTAGTAGGAATTTTCACATTCCTCATCAGGAACCTTAGGATTCTCTTATCTTAACTGTTTTCGTATACTTTGTTATGTAAGCCATACGTTCACATGCATATATTTTCTATAAATCAAGTCTGCCACAAGTAGCTTACTAGAAGGCTGTAATTTTTAGTTAGGGACTGGTTAATCACCCTGTTGTAGGTTATGGAAAATGATTTTAGTTTTGAAGGATTCTGTGTGTTTTCCAAGGTTAGAGAAAGTTGCTTTAACTACACCCAAGACCTCTATAGATGCCAGGTACGATAGAAATCTTTCGTCGATCTTATTTGTCATCAAGTTGACCAACCATACTGTGACCTTATTATTCACTGCTTCCCATCCTTTGTAGTTTGGATCAGTCTAACCATTGTAATTAGTTTTCTCATTTAGTTCGAGAATAGTTGCAACACCTTCAGAAACCATCACTGACGTGTGTGTATGTAGTACATTACTTGAGTTGAACGTATTCAAGAATGTTTTTGTGTTTGATACCTTCGATTATGTCGATTTAAGTTACTTCACATTACTTTCTTCAGGTGAAGAACCTCCAGAATCATTGTTCATGAAGGAACTGAAGAAGAGAGGTATAACTCCTACTTCCTTGCTCGAGGATACTAGCAACACTGACTTCGGACTTGGTGGCGAGATGAAGGGAGAAAACAGAGATTTTTCCCGTAGAAGTGCTGTTTCAACTGAAGTTGACAAGAGCCTATCCAATCAAAGGGAGCGTTCGATGCAATTGAACAGTGAAGGCCTTGAGGTTAATTTCCTTATGATTTTATTGGAGTATATTGAATATGCTATTTGAATATATAAATTCATGTTATCTTTTCGTTATCATTTTCTATTGTTCCCATGCTTGAACGAGTTATGACCAACATAACCAGAATTTGGTGAGCAGTCGAGGAAAATATTATTACTATCCCACCAAGAATATCGAAAGACTAGCCAGCCACTCAAAACCGAAGTCCAAATAAGGGATCTGTAAGAAAGAATTACAAAAATTAGCTCCAAACGTTGAGAACCATCCAAAACAAATGGACGACCAAAAATTTTCTGAAGCAAAAGCCTAAAGGGAAGCATTACAGCGGGCCAAGCTTTAGAAATCCTCCCATGACCTCTCTGTCCTAGAAGTCCTTGTTCTTTCTACTAAATACTCCAAATAACAACAACATAATCTGCCGGCAGAAAAACCATGTCGTTGTTACGAAAGGGAAGATGAAAAATAATCTCCTCCACACATCACTAAGTAGGTAATCAGAAATGAAAAGCATGCTCCAGGTGCCCGAAAATTTTCTTCCAAAACCTTCCCAGAAAACATGCATCTGAAGTAGCTCTTCGGATGAACTTGCAAAGATCACACCATTGAAATCAAACCACCGAGGACGATTTTAAATAAATCCATGATATTGATTCTCCCACAACCAGCAAAGAGAAGAGTAGAATTTAACCTTCTTCAGAAGCAAGTCCTTTCTAGTTTAGCAACAAACAAAAAAAAAAAAAAAAAAAAAAAAGNTGGTCGATGTTAAGCTCTGTTAAATTAAGTTTTCTTGAAAGTGAAGTTAATGGAACTAAACTGCCCAAAAGAAGAAAAGAAATCAACTGAGGAAATTTTCTTCTTTGAAGAGGGAGATTATAGAGCGGGAAAATAGACTTTAAAAGGCCACCGCCAATTGAATGGCCTTCCTAAAAATAATGATGAAGCCACTCTCAAATGAAAGATTAAACGATATTTAGCATGGGTACAACGAAATAGATTTCCAGTGCTTCCTAAATGTAGATTGTATTTTCTGATATCGATCTTGTACTGCAACATAGGCTTTGGTTAATAGAGCAATAGTTGTGAAAGCTAGATTTTCAATGCCCAAACCACCCTCTTTTAGAACAACTCAACAAGATAATGACCTTCCCCACACCCCCCGAGAAAAAAGAAATGAAGTCATTGAGTTTAATGATCAGTGGTTCAAGCTTTGAAGATTTCAGTTAAGAGGAATCCCACTCAAAACCAACTAGATCAGAGTAAGTCTGCCACCCTCGGAGAGAACTTCTTCCATAACAACAGGTGGTTTTCCTCTTTGTAATATCTCTTCTAGCCCCAAATTTTAGCCTCGAGTATACAATCAATTAGGGTAGAGATATTAACTGAATGCATACAACTATTTATGAAGGCTTAACATAGAACACGCTGAACCAACCTCTTCTGTTAGACCGTTGATATAGTACCAAAATATGGGAAGAAGAGTCTTCTCTTCCTGAAAAAGGCACCCTTCACCAACCTTCGCCAAAATGTGGAAAGCAATCTATCAACCAAGTAACAATTCCTAACTCCCAGAGTAAATCAGCAGCACCAAACTTTCCTTTCTCAAACACAAACTTTCTTGCATCCGTGATTCTCAATTAGAAAGACTTGCTTTCTATTGTAAAGCACCATCAAACATGAAGGCAAATCAAAGAAGAAAGTACCAAATCCCTTTTCCCGGTCCTAATTCGCAATTCAGTCATTCAACAATCTCCCGTTTTTTCTGTACTTATAGCTTAACAGCATCATGTGCCTGCTATTCTCTCATACATCATTTGTCTTAGTAATTCGTATATGAAGCATACTAGTAATTTTTTTAAAAGTCTAACTTCCACAAGCCAAAGCTCATAATTGGAACCAATGATACTGTTTATCTTAGCTAGCAGCATCAGTTTTGGAGTGGTCAATCAGTAGAGAAACACCAACATATCTGAGCGTAAGGTTTAATATAGAAGTCTGCAGTATTTGAGTTCTACATGCACTGAAACTATTGATGTTGATATTATTGTTGCTGGAAAACTGAAGCTTATTTCTAATTTCGTGCTGGAAGGAACAGAATAAACTTTATCGTGCATTTATGTTTTCTGCGTGATCCATTAATTGGATTTTAATATTAGGTTGATATTAGGTTAATATTACTCGTGATCCCTAAGAATGATATGGTCGGTTGTGTCTGTTTGGTCTTCGAACTGTTTTAACATTTACAAATTTAGTTCGTGAACTTCAATAATTTTTTATAATCAACAAATCTACTAAATACAAAATTAAACGTTTAGGATTCCTAAACAGATTGATTATATTCCGTTCCATTTCATTTCTATCATTTCAACTGCATATGTCAGCTTTAATTCATTTCATTTGGTTTTCAGGGGTTGATCCCTCGTGCTAAACTTTTGCTAACAATTGGAGGAACGTTCTTCTTAGGATTCTGGCCGTTGATCGTCGTCACTGTTTCGTTCTTTTTTGCTTTATACTTTGTAAGGCTCCTTTCTCTTATTACTGCTCCAATATCTGTTTGATATCCAAGTACTTGAAAGGAGGTCGAAACCGACATCTTTACTCTAATACTATTTCTATGCAGTTTCTTGGACCATCTTTTGTTCACGATGGCACCAAAACGCCAATATCACCTCCACCGTACGTTGATCCATATGCTCTTCTAGAAGACGAAAGAATTTCACAAATGGCTCCTCGTGTAAATTGACGGACGCATAATCTCCTAATTGGTTGGTTTTCTACTACTTTGTTTTCCCTTCCCAATGTTAATTGATGTTCCTTACTATTATTATTAATATATCTAAATGATTATTAGCTAGAATTTTCTGGTTTAATTTACGTTTTCAAGACTCATGCTCCTGCTGCTTTTTCTTTTTGGCTAGGATTTACACATTTTAACTTGTGGGTCAAATTATTTCTCATAATATAATAAAATGATTATTAGCTAAAAAAATTCTTTTTTATTCTTTCTAGTTTTGTGTTGCAGTTTTAA

mRNA sequence

ATGCATGAAGCTATTTCTCCCATTGAATTCACTGGGAGAAAGAAAGCTCTAGCTACCCGAGCTATGGCTGTTCTGCAAATTCTTAAATCAACTGTCTCTCCTCCTTCAATCTCTCAGCCGAAGTTTGGCTCTCAATCAAGCCGGTTCTTCTTGGAGTTGGATTCCACTAGGAGGTTTGTACTGCTCCATGGCCGTCGGAGGAGTTTGCGATATGGCTGCGTTCGTAGAAGGTTGAGTTTCCGTGAAGAACCTCCAGAATCATTGTTCATGAAGGAACTGAAGAAGAGAGGTATAACTCCTACTTCCTTGCTCGAGGATACTAGCAACACTGACTTCGGACTTGGTGGCGAGATGAAGGGAGAAAACAGAGATTTTTCCCGTAGAAGTGCTGTTTCAACTGAAGTTGACAAGAGCCTATCCAATCAAAGGGAGCGTTCGATGCAATTGAACAGTGAAGGCCTTGAGGGGTTGATCCCTCGTGCTAAACTTTTGCTAACAATTGGAGGAACGTTCTTCTTAGGATTCTGGCCGTTGATCGTCGTCACTGTTTCGTTCTTTTTTGCTTTATACTTTTTTCTTGGACCATCTTTTGTTCACGATGGCACCAAAACGCCAATATCACCTCCACCGTACGTTGATCCATATGCTCTTCTAGAAGACGAAAGAATTTCACAAATGGCTCCTCGTTTTTAA

Coding sequence (CDS)

ATGCATGAAGCTATTTCTCCCATTGAATTCACTGGGAGAAAGAAAGCTCTAGCTACCCGAGCTATGGCTGTTCTGCAAATTCTTAAATCAACTGTCTCTCCTCCTTCAATCTCTCAGCCGAAGTTTGGCTCTCAATCAAGCCGGTTCTTCTTGGAGTTGGATTCCACTAGGAGGTTTGTACTGCTCCATGGCCGTCGGAGGAGTTTGCGATATGGCTGCGTTCGTAGAAGGTTGAGTTTCCGTGAAGAACCTCCAGAATCATTGTTCATGAAGGAACTGAAGAAGAGAGGTATAACTCCTACTTCCTTGCTCGAGGATACTAGCAACACTGACTTCGGACTTGGTGGCGAGATGAAGGGAGAAAACAGAGATTTTTCCCGTAGAAGTGCTGTTTCAACTGAAGTTGACAAGAGCCTATCCAATCAAAGGGAGCGTTCGATGCAATTGAACAGTGAAGGCCTTGAGGGGTTGATCCCTCGTGCTAAACTTTTGCTAACAATTGGAGGAACGTTCTTCTTAGGATTCTGGCCGTTGATCGTCGTCACTGTTTCGTTCTTTTTTGCTTTATACTTTTTTCTTGGACCATCTTTTGTTCACGATGGCACCAAAACGCCAATATCACCTCCACCGTACGTTGATCCATATGCTCTTCTAGAAGACGAAAGAATTTCACAAATGGCTCCTCGTTTTTAA

Protein sequence

MHEAISPIEFTGRKKALATRAMAVLQILKSTVSPPSISQPKFGSQSSRFFLELDSTRRFVLLHGRRRSLRYGCVRRRLSFREEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFALYFFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAPRF

Homology

[Close]

BLAST of Cp4.1LG14g04600 vs. TrEMBL
Match: A0A0A0KY14_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000570 PE=4 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 5.0e-84
Identity = 172/219 (78.54%), Postives = 187/219 (85.39%), Query Frame = 1


Query: 22  MAVLQILKSTVSPPSISQPKFGSQSSRFFLELDSTRRFVLLHGRRRSLRYGCVRRRLSFR 81
           MA LQILKS++S PSIS   FGSQS+RF  + DS    +LLHGRRRSLRY CV RR +FR
Sbjct: 1   MAALQILKSSLSLPSISHSNFGSQSTRFVSDFDS----LLLHGRRRSLRYACVYRRFTFR 60

Query: 82  ------------EEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRS 141
                       EEPPESLFMKELKKRGITPTSLLEDT+++DF LGGEM GENRDFSRRS
Sbjct: 61  CAAKDTDKETNGEEPPESLFMKELKKRGITPTSLLEDTNSSDFELGGEMTGENRDFSRRS 120

Query: 142 AVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFAL 201
           AVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLI++TVSFFF L
Sbjct: 121 AVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGL 180

Query: 202 YFFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAP 229
           YFFLG SF+HDG +TPISPPPYVDPYALLEDERISQ+AP
Sbjct: 181 YFFLGASFIHDG-QTPISPPPYVDPYALLEDERISQIAP 214

[Close]

BLAST of Cp4.1LG14g04600 vs. TrEMBL
Match: E5GBH6_CUCME (Tubulin alpha chain OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 2.8e-63
Identity = 127/139 (91.37%), Postives = 134/139 (96.40%), Query Frame = 1


Query: 90  MKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQL 149
           MKELKKRGITPTSLLEDT+N+DFGLGGEM GENRDFSRRSAVSTEV+KSLSNQRERSMQL
Sbjct: 1   MKELKKRGITPTSLLEDTNNSDFGLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQL 60

Query: 150 NSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFALYFFLGPSFVHDGTKTPISPP 209
           NSEGLEGLIPRAKLLLTIGGTFFLGFWPLI++TVSFFF LYFF G SF+HDG KTPISPP
Sbjct: 61  NSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFFGSSFIHDG-KTPISPP 120

Query: 210 PYVDPYALLEDERISQMAP 229
           PYVDPYALLEDERISQ+AP
Sbjct: 121 PYVDPYALLEDERISQIAP 138

[Close]

BLAST of Cp4.1LG14g04600 vs. TrEMBL
Match: W9RN54_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_003356 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 9.1e-62
Identity = 136/219 (62.10%), Postives = 162/219 (73.97%), Query Frame = 1


Query: 22  MAVLQILKSTVSPPSISQPKFGSQSSRFFLELDSTRRFVLLHGRRRSLRYGCVRRRL--- 81
           MA +Q LK   SP S+S+P F      FF E    +R V       S  Y   R RL   
Sbjct: 1   MASVQFLKYNPSPVSVSRPNFPGNPRWFFSESSLRKRVVRFGSSGGSRNYTNKRLRLFCA 60

Query: 82  -------SFREEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEM-KGENRDFSRRSA 141
                  S  EEPPESLFMKEL++RG+TPTSL EDT+ +D+GL  E  + E R FS+R+A
Sbjct: 61  AQDPEKESNGEEPPESLFMKELRRRGMTPTSLREDTNTSDYGLNDETTRKEGRAFSQRNA 120

Query: 142 VSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFALY 201
           VSTEV+KSLS+QRERSM+LNSEGLEGLIPRA+LLLTIGGTFFLGFWPLI++TV+FF ALY
Sbjct: 121 VSTEVEKSLSDQRERSMKLNSEGLEGLIPRARLLLTIGGTFFLGFWPLILITVAFFSALY 180

Query: 202 FFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAPR 230
           F+ GP+FVHD +K PISPPPY+DPYALLE+ERISQ+APR
Sbjct: 181 FYFGPAFVHDASKMPISPPPYIDPYALLEEERISQIAPR 219

[Close]

BLAST of Cp4.1LG14g04600 vs. TrEMBL
Match: M5VKJ8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011181mg PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 1.5e-59
Identity = 131/220 (59.55%), Postives = 162/220 (73.64%), Query Frame = 1


Query: 22  MAVLQILKSTVSPPSISQPKFGSQSSRFFLELDSTRRFVLLHGRRRSLRYGCVRRRL--- 81
           MA LQ+LKS++SP  +S   F  +SS  F  + S +  + L   R S  Y  +RRRL   
Sbjct: 1   MASLQMLKSSLSPMPVSHSNFQGKSSWVFSGIQSRKSSIRLSSYRGSGYY--LRRRLRVC 60

Query: 82  ---------SFREEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRS 141
                    S  EEPPESLFMKEL++RG+TPTSLLE+    ++G   EM  E+R FS R+
Sbjct: 61  CKAQEGDNKSNGEEPPESLFMKELRRRGMTPTSLLEEKERIEYGANDEMGKEDRGFSTRN 120

Query: 142 AVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFAL 201
           AVSTE++KSL+NQRERSMQLNSEGLEGLIPRA+LLLTIGGTFFLGFWPLI++TV+ F AL
Sbjct: 121 AVSTEIEKSLANQRERSMQLNSEGLEGLIPRARLLLTIGGTFFLGFWPLILITVALFSAL 180

Query: 202 YFFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAPR 230
           Y + G +F+HDG+ +PISPP Y+DPY LLEDERISQ+APR
Sbjct: 181 YLYFGSTFIHDGSSSPISPPQYIDPYELLEDERISQIAPR 218

[Close]

BLAST of Cp4.1LG14g04600 vs. TrEMBL
Match: A0A067LBE0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16386 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 4.7e-58
Identity = 136/219 (62.10%), Postives = 161/219 (73.52%), Query Frame = 1


Query: 22  MAVLQILKSTVSPPSISQPKFGSQ--SSRFFLELDS-----TRRFVLLHGRRRSLRYGCV 81
           MA L ILK+T+SP SISQP F  +  S R    L S     +R+ +L    R  LR  C 
Sbjct: 1   MASLYILKTTLSPVSISQPNFPGKWDSRRTVFRLKSFSALSSRKHIL----RPKLRVLCS 60

Query: 82  RRR---LSFREEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMK--GENRDFSRRS 141
            +     S  EEPPESLFMKELK+RG+TPTSLLE+TS   +G+  E+K   E+R F +R+
Sbjct: 61  VQEGENQSNGEEPPESLFMKELKRRGMTPTSLLEETSRGSYGVQDEIKIGEEDRGFPKRN 120

Query: 142 AVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFAL 201
           AVSTE DK +SNQRERSM LNSEGLEGLIPRAKLLLT+GGTFFLGFWPLI++TV+FF  L
Sbjct: 121 AVSTEFDKGISNQRERSMALNSEGLEGLIPRAKLLLTLGGTFFLGFWPLILLTVAFFSGL 180

Query: 202 YFFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAP 229
           YF+ GPSFVHD +   ISPPPY+DPY LLEDERISQ+AP
Sbjct: 181 YFYFGPSFVHDASNRAISPPPYIDPYELLEDERISQIAP 215

[Close]

BLAST of Cp4.1LG14g04600 vs. TAIR10
Match: AT1G50020.1 (AT1G50020.1 unknown protein)

HSP 1 Score: 188.0 bits (476), Expect = 6.7e-48
Identity = 113/214 (52.80%), Postives = 145/214 (67.76%), Query Frame = 1


Query: 17  LATRAMAVLQILKSTVSPPSISQPKFGSQSSRFFLELDSTRRFVLLHGRRRSLRYGCVRR 76
           +A+ ++ ++++  S VS P    P       R F  L ++R +  L     +L  G    
Sbjct: 1   MASSSLEIVKLCGSPVSFPRHKSPIKLECRKRVF-RLPNSRSWHRLRVSSSALNGG---D 60

Query: 77  RLSFREEPPESLFMKELKKRGITPTSLLEDTS-NTDFGLGGEMKGENRDFSRRSAVSTEV 136
             S  EEPPESLFMKELK+RG+TPTSLL+D   + D    G+  G +   S+ +A +   
Sbjct: 61  NQSKGEEPPESLFMKELKRRGMTPTSLLQDYEVDQDEIKTGKETGNS---SKTTATTPAF 120

Query: 137 DKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFALYFFLGP 196
           DKSL NQRERS+ LNSEGLEGLIPRA++LLTIGGTFFLGFWPLIV+T+  F ALY + G 
Sbjct: 121 DKSLLNQRERSLALNSEGLEGLIPRARILLTIGGTFFLGFWPLIVLTLGAFSALYLYFGA 180

Query: 197 SFVHDGTKTPISPPPYVDPYALLEDERISQMAPR 230
            F+HDG++TP+SPPPY+DPYALLEDERIS M PR
Sbjct: 181 DFIHDGSRTPVSPPPYIDPYALLEDERISGMDPR 207

[Close]

BLAST of Cp4.1LG14g04600 vs. NCBI nr
Match: gi|659108855|ref|XP_008454422.1| (PREDICTED: uncharacterized protein LOC103494832 [Cucumis melo])

HSP 1 Score: 328.2 bits (840), Expect = 1.2e-86
Identity = 177/219 (80.82%), Postives = 188/219 (85.84%), Query Frame = 1


Query: 22  MAVLQILKSTVSPPSISQPKFGSQSSRFFLELDSTRRFVLLHGRRRSLRYGCVRRRLSFR 81
           MA LQILKST+S PSIS P FGSQS+RFF + DS    +LLHGRRRSLR  CV RR SFR
Sbjct: 1   MASLQILKSTLSLPSISHPNFGSQSTRFFSDFDS----LLLHGRRRSLRVACVCRRFSFR 60

Query: 82  ------------EEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRS 141
                       EEPPESLFMKELKKRGITPTSLLEDT+N+DFGLGGEM GENRDFSRRS
Sbjct: 61  CAAKDADKESNGEEPPESLFMKELKKRGITPTSLLEDTNNSDFGLGGEMTGENRDFSRRS 120

Query: 142 AVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFAL 201
           AVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLI++TVSFFF L
Sbjct: 121 AVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGL 180

Query: 202 YFFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAP 229
           YFF G SF+HDG KTPISPPPYVDPYALLEDERISQ+AP
Sbjct: 181 YFFFGSSFIHDG-KTPISPPPYVDPYALLEDERISQIAP 214

[Close]

BLAST of Cp4.1LG14g04600 vs. NCBI nr
Match: gi|449465109|ref|XP_004150271.1| (PREDICTED: uncharacterized protein LOC101221726 [Cucumis sativus])

HSP 1 Score: 318.9 bits (816), Expect = 7.1e-84
Identity = 172/219 (78.54%), Postives = 187/219 (85.39%), Query Frame = 1


Query: 22  MAVLQILKSTVSPPSISQPKFGSQSSRFFLELDSTRRFVLLHGRRRSLRYGCVRRRLSFR 81
           MA LQILKS++S PSIS   FGSQS+RF  + DS    +LLHGRRRSLRY CV RR +FR
Sbjct: 1   MAALQILKSSLSLPSISHSNFGSQSTRFVSDFDS----LLLHGRRRSLRYACVYRRFTFR 60

Query: 82  ------------EEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRS 141
                       EEPPESLFMKELKKRGITPTSLLEDT+++DF LGGEM GENRDFSRRS
Sbjct: 61  CAAKDTDKETNGEEPPESLFMKELKKRGITPTSLLEDTNSSDFELGGEMTGENRDFSRRS 120

Query: 142 AVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFAL 201
           AVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLI++TVSFFF L
Sbjct: 121 AVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGL 180

Query: 202 YFFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAP 229
           YFFLG SF+HDG +TPISPPPYVDPYALLEDERISQ+AP
Sbjct: 181 YFFLGASFIHDG-QTPISPPPYVDPYALLEDERISQIAP 214

[Close]

BLAST of Cp4.1LG14g04600 vs. NCBI nr
Match: gi|307135958|gb|ADN33818.1| (tubulin alpha chain [Cucumis melo subsp. melo])

HSP 1 Score: 250.0 bits (637), Expect = 4.1e-63
Identity = 127/139 (91.37%), Postives = 134/139 (96.40%), Query Frame = 1


Query: 90  MKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQL 149
           MKELKKRGITPTSLLEDT+N+DFGLGGEM GENRDFSRRSAVSTEV+KSLSNQRERSMQL
Sbjct: 1   MKELKKRGITPTSLLEDTNNSDFGLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQL 60

Query: 150 NSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFALYFFLGPSFVHDGTKTPISPP 209
           NSEGLEGLIPRAKLLLTIGGTFFLGFWPLI++TVSFFF LYFF G SF+HDG KTPISPP
Sbjct: 61  NSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGLYFFFGSSFIHDG-KTPISPP 120

Query: 210 PYVDPYALLEDERISQMAP 229
           PYVDPYALLEDERISQ+AP
Sbjct: 121 PYVDPYALLEDERISQIAP 138

[Close]

BLAST of Cp4.1LG14g04600 vs. NCBI nr
Match: gi|703096134|ref|XP_010095744.1| (hypothetical protein L484_003356 [Morus notabilis])

HSP 1 Score: 245.0 bits (624), Expect = 1.3e-61
Identity = 136/219 (62.10%), Postives = 162/219 (73.97%), Query Frame = 1


Query: 22  MAVLQILKSTVSPPSISQPKFGSQSSRFFLELDSTRRFVLLHGRRRSLRYGCVRRRL--- 81
           MA +Q LK   SP S+S+P F      FF E    +R V       S  Y   R RL   
Sbjct: 1   MASVQFLKYNPSPVSVSRPNFPGNPRWFFSESSLRKRVVRFGSSGGSRNYTNKRLRLFCA 60

Query: 82  -------SFREEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEM-KGENRDFSRRSA 141
                  S  EEPPESLFMKEL++RG+TPTSL EDT+ +D+GL  E  + E R FS+R+A
Sbjct: 61  AQDPEKESNGEEPPESLFMKELRRRGMTPTSLREDTNTSDYGLNDETTRKEGRAFSQRNA 120

Query: 142 VSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFALY 201
           VSTEV+KSLS+QRERSM+LNSEGLEGLIPRA+LLLTIGGTFFLGFWPLI++TV+FF ALY
Sbjct: 121 VSTEVEKSLSDQRERSMKLNSEGLEGLIPRARLLLTIGGTFFLGFWPLILITVAFFSALY 180

Query: 202 FFLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAPR 230
           F+ GP+FVHD +K PISPPPY+DPYALLE+ERISQ+APR
Sbjct: 181 FYFGPAFVHDASKMPISPPPYIDPYALLEEERISQIAPR 219

[Close]

BLAST of Cp4.1LG14g04600 vs. NCBI nr
Match: gi|645261348|ref|XP_008236251.1| (PREDICTED: uncharacterized protein LOC103335037 [Prunus mume])

HSP 1 Score: 241.1 bits (614), Expect = 1.9e-60
Identity = 131/218 (60.09%), Postives = 162/218 (74.31%), Query Frame = 1


Query: 22  MAVLQILKSTVSPPSISQPKFGSQSSRFFLELDSTRRFVLLHGR-------RRSLRYGCV 81
           MA LQ+LKS++SP  +SQ  F  +SS  F  + S + F+ L          RR LR  C 
Sbjct: 1   MASLQMLKSSLSPMPVSQSNFPGKSSWVFSGIQSRKSFIRLSSYSGSGYYLRRRLRVCCK 60

Query: 82  RRR---LSFREEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAV 141
            +     S  EEPPESLFMKEL++RG+TPTSLLE+    ++G   EM  E+R FS R+AV
Sbjct: 61  AQEGDNKSNGEEPPESLFMKELRRRGMTPTSLLEEKERIEYGANDEMGKEDRGFSTRNAV 120

Query: 142 STEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFALYF 201
           STE++KSL+NQRERSMQLNSEGLEGLIPRA+LLLTIGGTFFLGFWPLI++TV+ F ALY 
Sbjct: 121 STEIEKSLANQRERSMQLNSEGLEGLIPRARLLLTIGGTFFLGFWPLILITVALFSALYL 180

Query: 202 FLGPSFVHDGTKTPISPPPYVDPYALLEDERISQMAPR 230
           + G +F+HDG+ +PISPP Y+DPY LLEDERISQ+APR
Sbjct: 181 YFGSTFIHDGSSSPISPPQYIDPYELLEDERISQIAPR 218

The following BLAST results are available for this feature:

BLAST of Cp4.1LG14g04600 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG14g04600 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KY14_CUCSA	5.0e-84	78.54	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000570 PE=4 SV=1	[more]
E5GBH6_CUCME	2.8e-63	91.37	Tubulin alpha chain OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
W9RN54_9ROSA	9.1e-62	62.10	Uncharacterized protein OS=Morus notabilis GN=L484_003356 PE=4 SV=1	[more]
M5VKJ8_PRUPE	1.5e-59	59.55	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011181mg PE=4 SV=1	[more]
A0A067LBE0_JATCU	4.7e-58	62.10	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16386 PE=4 SV=1	[more]

BLAST of Cp4.1LG14g04600 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G50020.1	6.7e-48	52.80	unknown protein	[more]

BLAST of Cp4.1LG14g04600 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659108855\|ref\|XP_008454422.1\|	1.2e-86	80.82	PREDICTED: uncharacterized protein LOC103494832 [Cucumis melo]	[more]
gi\|449465109\|ref\|XP_004150271.1\|	7.1e-84	78.54	PREDICTED: uncharacterized protein LOC101221726 [Cucumis sativus]	[more]
gi\|307135958\|gb\|ADN33818.1\|	4.1e-63	91.37	tubulin alpha chain [Cucumis melo subsp. melo]	[more]
gi\|703096134\|ref\|XP_010095744.1\|	1.3e-61	62.10	hypothetical protein L484_003356 [Morus notabilis]	[more]
gi\|645261348\|ref\|XP_008236251.1\|	1.9e-60	60.09	PREDICTED: uncharacterized protein LOC103335037 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0032259	methylation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016020	membrane
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG14g04600.1	Cp4.1LG14g04600.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35699	FAMILY NOT NAMED	coord: 13..230 score: 1.9
None	No IPR available	PANTHER	PTHR35699:SF1	F2J10.10 PROTEIN	coord: 13..230 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG14g04600	Cucsa.298520	Cucumber (Gy14) v1	cgycpeB0780
Cp4.1LG14g04600	CmaCh16G003040	Cucurbita maxima (Rimu)	cmacpeB344
Cp4.1LG14g04600	CmaCh04G004300	Cucurbita maxima (Rimu)	cmacpeB715
Cp4.1LG14g04600	CmoCh04G004610	Cucurbita moschata (Rifu)	cmocpeB668
Cp4.1LG14g04600	CmoCh16G003220	Cucurbita moschata (Rifu)	cmocpeB307
Cp4.1LG14g04600	Cla006458	Watermelon (97103) v1	cpewmB204
Cp4.1LG14g04600	Csa4G000570	Cucumber (Chinese Long) v2	cpecuB219
Cp4.1LG14g04600	MELO3C018026	Melon (DHL92) v3.5.1	cpemeB201
Cp4.1LG14g04600	ClCG10G010000	Watermelon (Charleston Gray)	cpewcgB190
Cp4.1LG14g04600	CSPI04G00080	Wild cucumber (PI 183967)	cpecpiB221
Cp4.1LG14g04600	Lsi03G010050	Bottle gourd (USVL1VR-Ls)	cpelsiB168
Cp4.1LG14g04600	MELO3C018026.2	Melon (DHL92) v3.6.1	cpemedB243
Cp4.1LG14g04600	CsaV3_4G000050	Cucumber (Chinese Long) v3	cpecucB0263
Cp4.1LG14g04600	Bhi11G000911	Wax gourd	cpewgoB0266
Cp4.1LG14g04600	CsGy4G000090	Cucumber (Gy14) v2	cgybcpeB485
Cp4.1LG14g04600	Carg08104	Silver-seed gourd	carcpeB0523
Cp4.1LG14g04600	Carg19701	Silver-seed gourd	carcpeB0407

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG14g04600	Cp4.1LG01g02810	Cucurbita pepo (Zucchini)	cpecpeB234

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG14g04600	Cucurbita maxima (Rimu)	cmacpeB114
Cp4.1LG14g04600	Cucurbita moschata (Rifu)	cmocpeB092
Cp4.1LG14g04600	Melon (DHL92) v3.6.1	cpemedB220