Cp4.1LG01g02810 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g02810
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Tubulin alpha-6 chain, putative
Location	Cp4.1LG01 : 2232145 .. 2236770 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCCATTTCATTTTGTTTTGTGTTTTTGTTATTTTTGGAAAACTAAAATGAAACTATTTATTCTTCTTCTCCCGTTGAATTGCTTGTGAGGAAGGAAGTTCCATCTCTGCTTCTAGTTCTACTTCTAGTTCTACCTATGGCTGCTCTGCAAATTCTCAAATCAACTGTCTCTCCTCTTTCGTTCTCTCAGCCGAGTTTTGGCGTCCAATCGAGCCGGTTCTTCTCGGAGTTGGATTCCTCGAGGAGGTTTGTACGGTTCCATGGCCGTCGGAGAAGTTTGAGATATGGCTGCGTTTGTAGGAGGTTGAGTTTCCGTTGCGCTGCTCAGGATGCTCATAAGGAAAGCAATGGTAAGTTTTAGCCGGCCTTTCTTCTTCTTCTTCTTCTGCTTGTTGCGGTCTTGTTTTTTGTTCTGTGTTTTTTTTTTCGTTCTCAGTGGATTTGCCTTGCTTGGATCTTCTTCATGAATTGATTTGCGTTATCATGGACTTCGTGTTGCTTATATTGAAGGCGAGAGATCGAGAGGCTACTAATTAACTTGTTTTGGTGAGGCAATAGTTCCATGGTGTATGTTGTTCGGATATTCCATCACTCTCACTCGTGAATGATCTTGCTCTTCTGAGAATCGTGCGAGCATTCATTCGGCTATTCTTTCGTCACTTCTGGTTTATCTTTCTCAGTGCATTTTCCTTGCTCGGATGTCTTGATGAATTGATGCTAGTGATCATAGACTTGAGCGAGAGATAGAGAGGCAATAAGTAGCTTAAGCCTTCGCTGAGGCAGAATTTGCGTGGTGTAGTTTGTTGTTCGGATTGTTCGTCACTTCCGAATTTTCTTGTTCTGTGGATATTAGCTCAATCATGTAGAAAAAATCGTACGAGACAAGATCCTTCCAGCCATTCGTCCGTCATTCCTTAAATCTCATTCACTGTGCATTTTCCTTGTTTGGATATCTTGATGAATTGATGTTCGTTATTGTGGACATCGTTCTGCTTATTTATTTCCGAAGTGAGAAATGGAGACACAAATGCACCGAGAGAATTCGGGAAGAATCGACGAATAGTTGGATGGACCTCGTACTATCTTGTTTTGCCACATGCTTGTGCTACAGTCCACAGAATAAGGTAGTAGATAGTTCATTATCATAGAGCTCATCTTGCTTAGTTTCAAAAGGCGAGAGTTAGGAGAGGCATCTAACTTTCTTAGAAGAGGCGGAAGTTGCACGGTGAAGTTTATTCAGATGGTCTTTCATTTCTTAGTTTTGGTTATTCAGCCAGAGAACACTTGGTAGATGGATAAAACCATAATTCCTACCAATATCTATGTTAACCATGAATCTGTAACCCTGGTTTTTTTATTGGTCCAGTTGTTATAGTTAAAGCTTTTAGGAAGCTACATATCTGTACCAAACCAACAGTTCTAGTACCCGTACTTGTATTAGGAGTGGTAGCTGGCTATGCTTGTTTAGATTGCTTGAACAGCTTGCTAAAGGTCGAATTGCTCCTTTGAGAAGCATTTCCATTTCGGACATTAGAGATTTGTTCAGCCAGCGTAACAGTGGCATGGTTTCTTTAGTCTTCCAAGTTTATCTTCCATGAACTTTCCAGGCAAGTCTCTTTTGAGTGCATTATCTTCTTACCATGTTCATACTTGGCCTTTCTTCTTCGGTCTCATATAGAAGAACTTTTTCGTATTAGAGCATAGCTTTTAGAGTTCACCTGATTTGATGTTCCAAGAAAGTTTGTATCTGCCTCAGTAGTAATGCTTCTACTAGTAGGTCTTTATAGTCGGAATCTTTCATGTTCTGAATCTTAGTTTTTGTTAATTCTAGTAGGAACCTGAAAATTCTCTTTTCTTGACTATTTTCTTGTACATTTTTTTATGCCTAAGCCGTACCTTCCCACTCGAGTTTGCCACAAGTAGCATACAAGAAGACTATATTGTTGAGTTGGGGACTGGTTAAATCGCCTTATTGTAGCTTATGGACAATGCTTTCAATTTCAAAAGACTCCTAGTGTTTTCCAAGGTTAGAGAAAGTGTTATTTGGCTGCTCCCACGATCTCTATAGAGGTCTGGTATGATAGAAATCTTTTGCCGATCTTATTTGTCATCATATTATTCTCTGTTTCCCGTCCTTGGTAGTTTGGATCAGTCAAACTATTGTAAAATGTTTTCCCCATTTCATTTGTGACTACTAATGGGCATGCATCACCTTCAAAAACCATCACAGCCGTGTGTTTGCATTCAGTATATTACTTGAGTTGAATATATTGAAGAATGTTTTCGGTTTCAGACCTTCGATTATGTTAATTTAAGGTGTTATACATTACTTTTTTCAGGAGAAGAACCTCCAGAATCATTATTCATGAAGGAGCTGAAGAAGAGAGGTATAACTCCCACTTCCTTGCTTGAGGATACTAAAAGCACTGAATTTGAACTGGGTGGTGAGACGACGGGAGAAAACATAGATTTCTCCGGTACAAGTGCTGTTTCAACTGAAGTTAGCAAGAGCCTATCCAATCAAAGGGAGCGTTCCATGCAATTGAACAGTGAAGGCCTTGAGGTTAATTTCCTTATGATTTTATTTATTCGAGTTTATGAGTTATTCAAATTTCTCAATTCATTATATCTGATCTGTTTTGATTTCTATTGTTCCCTTGCTTGAAGAGTTGTGACCAAAATAACCAGAATTTGGTGAACAATTAATGAAAATATTATTACCATTCACCAAGAACAATGAAAGACTGGCCGGCCATACAAACCAAAAGCTAAAGACGTAAGGAATCTATAAAAAAGAATTACAATAAGTTGCCGGCTCCAAAGTTGATAATCATCCAAAACAATTGGACGACCAAAAACTCTCTGGAGAAAAAGCCTAAAGAAAAGCATTGTAGTGAGCCAAGCTCCAAAACATCCTACCATTATCTTTTCTTTCCCATAAAAATCCTCATAATTCTTTCTAACTTAATACTCCAAACAGCAACAAAGTAATCCGCCTGCTGACTGCTGATGAACCTTTCCTTCGTTGGTAAAGGGAGGATGAAAATAATCTCAATTCTCATCCACACATCAGTGATTAGAAATGAAAGAAATACTCCTGATAATACACTAGATGTATTGAAAAATTTCTACCAAAGCTTCTCAGAAAACATGCATCCGAGAATGCTCTTTTGATGTGCCTGCTTGCAAAGATCACACCATTTGAAGTCAAACTACCCAAGACAATTTTGAATAAGTCCTTGATATCGATTCTCCCAAGGCAACCAGCCAAAAGCAGAATCAAGGGTGTTGTTTGTTGGTGATATGATGGTATCTTTTATAAAATATAAAACTACTAGTAGTTGCCAACTAAATATTAGGTTGAACATAAAGTTGTATTAATTAATTGATGAACATATTTTATGTCTCAACCACAAACTTTCCTCCATCCCTATAGCTCAATTAGAAAGATTTACTTTCTATAGGTATAGAAAAGCACCATCAAACATGAAGCCCAAGATAATCGAGAAATAATTAGTCATTTGTATTAGTAGTTCTTATAAAAACAAAACGTACTTGTAGATTTTTTTTTTAAAGAAGTGTTACTTGGACATGCAAAGGATCATAATCGGAATCCATCATAGTGAGGTTTGAAATTGAAGTATGCAGTATTTGAGCCTTCTACATGTCACTGGAACTGTATTCTATTATCAAACAAAAACCTAGGAAAAACTGGGGAAGTTCATTCCTAATTTTGTGCTGGAATGAACACAATCTGTGTGATCCATTCGCTAACATTATAACGATATCATTGGCAGAAGATCACCCTAGTTAAGAATGATTCTTGGCTCACTTCTAAAAGAGAGAACAGTTTCTATATGATTGCTTTAATTTCTTCTTTCTTGCATAATTTGCTCTACTTATTTCGTTATTTTTTCATTCCAATTTCAAGTGATTATCATTTCTAGTATATATTTCGATCATCTTGTCTACTTTGAACATAAACTCAATGGAGATAGTATTTCTTACTTATAAACCCATGACCAATCCCTTAATTAACCGATGTGGGACTCCTCTCCCAACAATCCTCAACCATTCTAACATGTTTAAGGTTAACATTGTTTTATTTGGTTTCAGGGGTTGATCCCTCGTGCTAAACTTTTGCTAACACTTGGAGGAACATTTTTCTTAGGATTCTGGCCGCTGATCGTCGTCACTATTTCATTATTTTTTGCTTTAGACTTTGTAAGGCTTCTTGAATTCCAGATTAACATCCAAGTACTAAAGAGGAGCTAGACTTTGTGCTTGATTGCAAAACCCCAGCTGAAAACTAACCATTCTGAAATATTTTGTTCCAATGCAGTTTTTTGGATCATCTTTTGTTCACGACGGCAACCAAACGCCACCATCTCCTCCACCATATGTTTATCCATATGCTCCTTTAGAAGACGAGAGGATTTCACAAATAGCTCCTCGTGTAAATTGACTGGTACCCATTATAATCCTAATTGGTTGGTTTTCTGCTACTTACTTTTCCCTTTCGCAATATTAATTCCTGTCCTTCAATATTATGTATATATGAAAATGATTTTTAGCTAGAATTTTCTTGTTTACACTTTTTTTGGTTAGGATTTTTAGCTAGAATGT

mRNA sequence

TTCCATTTCATTTTGTTTTGTGTTTTTGTTATTTTTGGAAAACTAAAATGAAACTATTTATTCTTCTTCTCCCGTTGAATTGCTTGTGAGGAAGGAAGTTCCATCTCTGCTTCTAGTTCTACTTCTAGTTCTACCTATGGCTGCTCTGCAAATTCTCAAATCAACTGTCTCTCCTCTTTCGTTCTCTCAGCCGAGTTTTGGCGTCCAATCGAGCCGGTTCTTCTCGGAGTTGGATTCCTCGAGGAGGTTTGTACGGTTCCATGGCCGTCGGAGAAGTTTGAGATATGGCTGCGTTTGTAGGAGGTTGAGTTTCCGTTGCGCTGCTCAGGATGCTCATAAGGAAAGCAATGGAGAAGAACCTCCAGAATCATTATTCATGAAGGAGCTGAAGAAGAGAGGTATAACTCCCACTTCCTTGCTTGAGGATACTAAAAGCACTGAATTTGAACTGGGTGGTGAGACGACGGGAGAAAACATAGATTTCTCCGGTACAAGTGCTGTTTCAACTGAAGTTAGCAAGAGCCTATCCAATCAAAGGGAGCGTTCCATGCAATTGAACAGTGAAGGCCTTGAGTTTTTTGGATCATCTTTTGTTCACGACGGCAACCAAACGCCACCATCTCCTCCACCATATGTTTATCCATATGCTCCTTTAGAAGACGAGAGGATTTCACAAATAGCTCCTCGTGTAAATTGACTGGTACCCATTATAATCCTAATTGGTTGGTTTTCTGCTACTTACTTTTCCCTTTCGCAATATTAATTCCTGTCCTTCAATATTATGTATATATGAAAATGATTTTTAGCTAGAATTTTCTTGTTTACACTTTTTTTGGTTAGGATTTTTAGCTAGAATGT

Coding sequence (CDS)

ATGGCTGCTCTGCAAATTCTCAAATCAACTGTCTCTCCTCTTTCGTTCTCTCAGCCGAGTTTTGGCGTCCAATCGAGCCGGTTCTTCTCGGAGTTGGATTCCTCGAGGAGGTTTGTACGGTTCCATGGCCGTCGGAGAAGTTTGAGATATGGCTGCGTTTGTAGGAGGTTGAGTTTCCGTTGCGCTGCTCAGGATGCTCATAAGGAAAGCAATGGAGAAGAACCTCCAGAATCATTATTCATGAAGGAGCTGAAGAAGAGAGGTATAACTCCCACTTCCTTGCTTGAGGATACTAAAAGCACTGAATTTGAACTGGGTGGTGAGACGACGGGAGAAAACATAGATTTCTCCGGTACAAGTGCTGTTTCAACTGAAGTTAGCAAGAGCCTATCCAATCAAAGGGAGCGTTCCATGCAATTGAACAGTGAAGGCCTTGAGTTTTTTGGATCATCTTTTGTTCACGACGGCAACCAAACGCCACCATCTCCTCCACCATATGTTTATCCATATGCTCCTTTAGAAGACGAGAGGATTTCACAAATAGCTCCTCGTGTAAATTGA

Protein sequence

MAALQILKSTVSPLSFSQPSFGVQSSRFFSELDSSRRFVRFHGRRRSLRYGCVCRRLSFRCAAQDAHKESNGEEPPESLFMKELKKRGITPTSLLEDTKSTEFELGGETTGENIDFSGTSAVSTEVSKSLSNQRERSMQLNSEGLEFFGSSFVHDGNQTPPSPPPYVYPYAPLEDERISQIAPRVN

Homology

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BLAST of Cp4.1LG01g02810 vs. TrEMBL
Match: A0A0A0KY14_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000570 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 4.6e-56
Identity = 138/222 (62.16%), Postives = 153/222 (68.92%), Query Frame = 1


Query: 1   MAALQILKSTVSPLSFSQPSFGVQSSRFFSELDSSRRFVRFHGRRRSLRYGCVCRRLSFR 60
           MAALQILKS++S  S S  +FG QS+RF S+ DS    +  HGRRRSLRY CV RR +FR
Sbjct: 1   MAALQILKSSLSLPSISHSNFGSQSTRFVSDFDS----LLLHGRRRSLRYACVYRRFTFR 60

Query: 61  CAAQDAHKESNGEEPPESLFMKELKKRGITPTSLLEDTKSTEFELGGETTGENIDFSGTS 120
           CAA+D  KE+NGEEPPESLFMKELKKRGITPTSLLEDT S++FELGGE TGEN DFS  S
Sbjct: 61  CAAKDTDKETNGEEPPESLFMKELKKRGITPTSLLEDTNSSDFELGGEMTGENRDFSRRS 120

Query: 121 AVSTEVSKSLSNQRERSMQ------------------LNSE-----------------GL 180
           AVSTEV+KSLSNQRERSMQ                  +                    GL
Sbjct: 121 AVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGL 180

Query: 181 EFF-GSSFVHDGNQTPPSPPPYVYPYAPLEDERISQIAPRVN 187
            FF G+SF+HDG QTP SPPPYV PYA LEDERISQIAP VN
Sbjct: 181 YFFLGASFIHDG-QTPISPPPYVDPYALLEDERISQIAPPVN 217

[Close]

BLAST of Cp4.1LG01g02810 vs. TrEMBL
Match: D7T3P1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0088g00400 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 3.4e-35
Identity = 107/224 (47.77%), Postives = 127/224 (56.70%), Query Frame = 1


Query: 1   MAALQILKS-TVSPLSFSQPSFGVQSSRFFSELDSSRRFVRFHGRRRSLRYGCVCRRLSF 60
           MA+LQILKS T  PL  SQ     +S+  FSE DS +R       R S  +    RRL  
Sbjct: 1   MASLQILKSSTFPPLPISQSKISRKSTCLFSEFDSRKRI------RNSAFF--TRRRLRV 60

Query: 61  RCAAQDAHKESNGEEPPESLFMKELKKRGITPTSLLEDTKSTEFELGGETT-GENIDFSG 120
            C  Q+   +SNGEEPPESLFMKELK+RG+TPTSLLED+K   + L  E    E+I FS 
Sbjct: 61  CCGVQEGDNQSNGEEPPESLFMKELKRRGMTPTSLLEDSKRGAYGLEEEIKLEEDIGFSK 120

Query: 121 TSAVSTEVSKSLSNQRERSMQLNSEGLE-------------------------------- 180
            +A ST+   +LSNQRERSM LNSEGLE                                
Sbjct: 121 RNAYSTDFEANLSNQRERSMALNSEGLEGLIPRAKLLLTIGGTFFLGFGPLILITVAFFC 180

Query: 181 ----FFGSSFVHDGNQTPPSPPPYVYPYAPLEDERISQIAPRVN 187
               +FG +FVHDG++TP  PP Y+ PY  LEDERISQIAPRVN
Sbjct: 181 ALYFYFGPTFVHDGSKTPIMPPQYIDPYELLEDERISQIAPRVN 216

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BLAST of Cp4.1LG01g02810 vs. TrEMBL
Match: A0A067LBE0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16386 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 3.0e-31
Identity = 101/226 (44.69%), Postives = 123/226 (54.42%), Query Frame = 1


Query: 1   MAALQILKSTVSPLSFSQPSF-GVQSSRFFSELDSSRRFVRFHGRRRSLRYGCVCRRLSF 60
           MA+L ILK+T+SP+S SQP+F G   SR    +   + F     R+  LR      +L  
Sbjct: 1   MASLYILKTTLSPVSISQPNFPGKWDSR--RTVFRLKSFSALSSRKHILR-----PKLRV 60

Query: 61  RCAAQDAHKESNGEEPPESLFMKELKKRGITPTSLLEDTK------STEFELGGETTGEN 120
            C+ Q+   +SNGEEPPESLFMKELK+RG+TPTSLLE+T         E ++G E  G  
Sbjct: 61  LCSVQEGENQSNGEEPPESLFMKELKRRGMTPTSLLEETSRGSYGVQDEIKIGEEDRG-- 120

Query: 121 IDFSGTSAVSTEVSKSLSNQRERSMQLNSEGLE--------------------------- 180
             F   +AVSTE  K +SNQRERSM LNSEGLE                           
Sbjct: 121 --FPKRNAVSTEFDKGISNQRERSMALNSEGLEGLIPRAKLLLTLGGTFFLGFWPLILLT 180

Query: 181 ---------FFGSSFVHDGNQTPPSPPPYVYPYAPLEDERISQIAP 184
                    +FG SFVHD +    SPPPY+ PY  LEDERISQIAP
Sbjct: 181 VAFFSGLYFYFGPSFVHDASNRAISPPPYIDPYELLEDERISQIAP 215

[Close]

BLAST of Cp4.1LG01g02810 vs. TrEMBL
Match: A0A061E8B1_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_007268 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 5.1e-31
Identity = 98/226 (43.36%), Postives = 120/226 (53.10%), Query Frame = 1


Query: 1   MAALQILKSTVSPLSFSQPSFGVQSS--RFFSELDSSRRFVRFHGRRRSLRYGCVCRRLS 60
           MA+LQ+L    S +S S  +F  +S   +     +  R F   H +R  +          
Sbjct: 1   MASLQLLNPVFSSISISHSNFPGKSDFRKKLLSFNRCRSFGPLHNQRSKIH--------- 60

Query: 61  FRCAAQDAHKESNGEEPPESLFMKELKKRGITPTSLLEDTKSTEFELGGET-TGENID-F 120
             CA Q+   +SNGEEPPES FMKELK+RG+TP SLLED K T + +  E   GE    F
Sbjct: 61  --CATQEGDNKSNGEEPPESQFMKELKRRGMTPASLLEDAKRTNYGVDEEMKVGEEAGTF 120

Query: 121 SGTSAVSTEVSKSLSNQRERSMQLNSEGLE------------------------------ 180
           S  + VSTE  KSLSNQRERSM+LNSEGLE                              
Sbjct: 121 SNRNVVSTEYEKSLSNQRERSMELNSEGLEGLVPRAKLLLTIGGTFFLGFWPVILSTIAF 180

Query: 181 ------FFGSSFVHDGNQTPPSPPPYVYPYAPLEDERISQIAPRVN 187
                 +FGSSF+HD ++T  SPP YV P+A LEDERISQ APRVN
Sbjct: 181 FTALYLYFGSSFIHDASETSISPPQYVDPFALLEDERISQTAPRVN 215

[Close]

BLAST of Cp4.1LG01g02810 vs. TrEMBL
Match: B9S7Y6_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1382800 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 6.7e-31
Identity = 98/229 (42.79%), Postives = 127/229 (55.46%), Query Frame = 1


Query: 1   MAALQILKSTVSPLSFSQPSFGVQSS--RFFSELDS--SRRFVRFHGRRRSLRYGCVCRR 60
           MAAL +LKST+SP+S  Q +F   S+  R   +L++  SRR+++              ++
Sbjct: 1   MAALYVLKSTLSPISIQQKNFPGNSNPRRTILKLENFTSRRYIQK-------------QK 60

Query: 61  LSFRCAAQDAHKESNGEEPPESLFMKELKKRGITPTSLLEDTKS------TEFELGGETT 120
            S  C+ Q+   ++N EE PESLFMKELK+RG+TPTSLLED+         EF++G E  
Sbjct: 61  FSVCCSVQEGDNQNNAEEAPESLFMKELKRRGMTPTSLLEDSNKGSYGLEDEFKIGQE-- 120

Query: 121 GENIDFSGTSAVSTEVSKSLSNQRERSMQLNSEGLE------------------------ 180
            E+  F     VSTE  KSL+NQRE SM LNSEGLE                        
Sbjct: 121 -EDRGFFKRKVVSTEFDKSLTNQRETSMALNSEGLEGLIPRAKLLLTIGGTFFLGFWPLI 180

Query: 181 ------------FFGSSFVHDGNQTPPSPPPYVYPYAPLEDERISQIAP 184
                       +FGS+F+HDG+ TP SPPPY+ PY  LEDERISQIAP
Sbjct: 181 LVTVGFFSALYFYFGSTFIHDGSNTPMSPPPYIDPYELLEDERISQIAP 213

[Close]

BLAST of Cp4.1LG01g02810 vs. TAIR10
Match: AT1G50020.1 (AT1G50020.1 unknown protein)

HSP 1 Score: 109.4 bits (272), Expect = 2.4e-24
Identity = 87/222 (39.19%), Postives = 116/222 (52.25%), Query Frame = 1


Query: 2   AALQILKSTVSPLSFSQPSFGVQSSRFFSELDSSRRFVRFHGRRRSLRYGCVCRRLSFRC 61
           ++L+I+K   SP+SF +    ++       L+  +R  R    R   R      R+S   
Sbjct: 4   SSLEIVKLCGSPVSFPRHKSPIK-------LECRKRVFRLPNSRSWHRL-----RVS-SS 63

Query: 62  AAQDAHKESNGEEPPESLFMKELKKRGITPTSLLEDTKSTEFEL-GGETTGENIDFSGTS 121
           A      +S GEEPPESLFMKELK+RG+TPTSLL+D +  + E+  G+ TG +   S T+
Sbjct: 64  ALNGGDNQSKGEEPPESLFMKELKRRGMTPTSLLQDYEVDQDEIKTGKETGNS---SKTT 123

Query: 122 AVSTEVSKSLSNQRERSMQLNSEGLE----------FFGSSFV----------------- 181
           A +    KSL NQRERS+ LNSEGLE            G +F                  
Sbjct: 124 ATTPAFDKSLLNQRERSLALNSEGLEGLIPRARILLTIGGTFFLGFWPLIVLTLGAFSAL 183

Query: 182 ---------HDGNQTPPSPPPYVYPYAPLEDERISQIAPRVN 187
                    HDG++TP SPPPY+ PYA LEDERIS + PR+N
Sbjct: 184 YLYFGADFIHDGSRTPVSPPPYIDPYALLEDERISGMDPRLN 209

[Close]

BLAST of Cp4.1LG01g02810 vs. NCBI nr
Match: gi|659108855|ref|XP_008454422.1| (PREDICTED: uncharacterized protein LOC103494832 [Cucumis melo])

HSP 1 Score: 234.2 bits (596), Expect = 1.9e-58
Identity = 141/222 (63.51%), Postives = 154/222 (69.37%), Query Frame = 1


Query: 1   MAALQILKSTVSPLSFSQPSFGVQSSRFFSELDSSRRFVRFHGRRRSLRYGCVCRRLSFR 60
           MA+LQILKST+S  S S P+FG QS+RFFS+ DS    +  HGRRRSLR  CVCRR SFR
Sbjct: 1   MASLQILKSTLSLPSISHPNFGSQSTRFFSDFDS----LLLHGRRRSLRVACVCRRFSFR 60

Query: 61  CAAQDAHKESNGEEPPESLFMKELKKRGITPTSLLEDTKSTEFELGGETTGENIDFSGTS 120
           CAA+DA KESNGEEPPESLFMKELKKRGITPTSLLEDT +++F LGGE TGEN DFS  S
Sbjct: 61  CAAKDADKESNGEEPPESLFMKELKKRGITPTSLLEDTNNSDFGLGGEMTGENRDFSRRS 120

Query: 121 AVSTEVSKSLSNQRERSMQ----------------LNSEGLEF----------------- 180
           AVSTEV+KSLSNQRERSMQ                L   G  F                 
Sbjct: 121 AVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGL 180

Query: 181 ---FGSSFVHDGNQTPPSPPPYVYPYAPLEDERISQIAPRVN 187
              FGSSF+HDG +TP SPPPYV PYA LEDERISQIAP VN
Sbjct: 181 YFFFGSSFIHDG-KTPISPPPYVDPYALLEDERISQIAPPVN 217

[Close]

BLAST of Cp4.1LG01g02810 vs. NCBI nr
Match: gi|449465109|ref|XP_004150271.1| (PREDICTED: uncharacterized protein LOC101221726 [Cucumis sativus])

HSP 1 Score: 225.7 bits (574), Expect = 6.6e-56
Identity = 138/222 (62.16%), Postives = 153/222 (68.92%), Query Frame = 1


Query: 1   MAALQILKSTVSPLSFSQPSFGVQSSRFFSELDSSRRFVRFHGRRRSLRYGCVCRRLSFR 60
           MAALQILKS++S  S S  +FG QS+RF S+ DS    +  HGRRRSLRY CV RR +FR
Sbjct: 1   MAALQILKSSLSLPSISHSNFGSQSTRFVSDFDS----LLLHGRRRSLRYACVYRRFTFR 60

Query: 61  CAAQDAHKESNGEEPPESLFMKELKKRGITPTSLLEDTKSTEFELGGETTGENIDFSGTS 120
           CAA+D  KE+NGEEPPESLFMKELKKRGITPTSLLEDT S++FELGGE TGEN DFS  S
Sbjct: 61  CAAKDTDKETNGEEPPESLFMKELKKRGITPTSLLEDTNSSDFELGGEMTGENRDFSRRS 120

Query: 121 AVSTEVSKSLSNQRERSMQ------------------LNSE-----------------GL 180
           AVSTEV+KSLSNQRERSMQ                  +                    GL
Sbjct: 121 AVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIIITVSFFFGL 180

Query: 181 EFF-GSSFVHDGNQTPPSPPPYVYPYAPLEDERISQIAPRVN 187
            FF G+SF+HDG QTP SPPPYV PYA LEDERISQIAP VN
Sbjct: 181 YFFLGASFIHDG-QTPISPPPYVDPYALLEDERISQIAPPVN 217

[Close]

BLAST of Cp4.1LG01g02810 vs. NCBI nr
Match: gi|225429185|ref|XP_002275810.1| (PREDICTED: uncharacterized protein LOC100266884 isoform X1 [Vitis vinifera])

HSP 1 Score: 156.4 bits (394), Expect = 4.9e-35
Identity = 107/224 (47.77%), Postives = 127/224 (56.70%), Query Frame = 1


Query: 1   MAALQILKS-TVSPLSFSQPSFGVQSSRFFSELDSSRRFVRFHGRRRSLRYGCVCRRLSF 60
           MA+LQILKS T  PL  SQ     +S+  FSE DS +R       R S  +    RRL  
Sbjct: 1   MASLQILKSSTFPPLPISQSKISRKSTCLFSEFDSRKRI------RNSAFF--TRRRLRV 60

Query: 61  RCAAQDAHKESNGEEPPESLFMKELKKRGITPTSLLEDTKSTEFELGGETT-GENIDFSG 120
            C  Q+   +SNGEEPPESLFMKELK+RG+TPTSLLED+K   + L  E    E+I FS 
Sbjct: 61  CCGVQEGDNQSNGEEPPESLFMKELKRRGMTPTSLLEDSKRGAYGLEEEIKLEEDIGFSK 120

Query: 121 TSAVSTEVSKSLSNQRERSMQLNSEGLE-------------------------------- 180
            +A ST+   +LSNQRERSM LNSEGLE                                
Sbjct: 121 RNAYSTDFEANLSNQRERSMALNSEGLEGLIPRAKLLLTIGGTFFLGFGPLILITVAFFC 180

Query: 181 ----FFGSSFVHDGNQTPPSPPPYVYPYAPLEDERISQIAPRVN 187
               +FG +FVHDG++TP  PP Y+ PY  LEDERISQIAPRVN
Sbjct: 181 ALYFYFGPTFVHDGSKTPIMPPQYIDPYELLEDERISQIAPRVN 216

[Close]

BLAST of Cp4.1LG01g02810 vs. NCBI nr
Match: gi|694414259|ref|XP_009335356.1| (PREDICTED: uncharacterized protein LOC103928069 [Pyrus x bretschneideri])

HSP 1 Score: 151.4 bits (381), Expect = 1.6e-33
Identity = 100/221 (45.25%), Postives = 127/221 (57.47%), Query Frame = 1


Query: 1   MAALQILKSTVSPLSFSQPSFGVQSSRFFSELDSSRRFVRFHGRRRSLRYGCVCRRLSFR 60
           MA++Q+LKS +S +  SQ +F  +SSR FSE  S +  +R  G R S       RR    
Sbjct: 1   MASIQMLKSPLSSIPVSQSNFPGKSSRVFSENQSRKCLIRLSGYRGSGYLLRDRRRFGVC 60

Query: 61  CAAQDAHKESNGEEPPESLFMKELKKRGITPTSLLEDTKSTEFELGGETTGENIDFSGTS 120
           C AQ++  +SNGEEPPESLFMKEL++RG+ PTSLLE+ + T++ +  E   E+  FS  +
Sbjct: 61  CKAQESDSKSNGEEPPESLFMKELRRRGMNPTSLLEERERTDYGMNDEMRNEDRGFSARN 120

Query: 121 AVSTEVSKSLSNQRERSMQLNSEGLE----------FFGSSFV----------------- 180
           AVSTE+ KSL+NQRERSMQLNSEGLE            G SF                  
Sbjct: 121 AVSTEIEKSLANQRERSMQLNSEGLEGLIPRARLLLTIGGSFFLGFWPLILITVALFSAL 180

Query: 181 ---------HDGNQTPPSPPPYVYPYAPLEDERISQIAPRV 186
                    HDG+ +  S   Y+ PY  LEDERISQIAPRV
Sbjct: 181 YLYFGSTFVHDGSSSQISALQYIDPYELLEDERISQIAPRV 221

[Close]

BLAST of Cp4.1LG01g02810 vs. NCBI nr
Match: gi|731384137|ref|XP_010648016.1| (PREDICTED: uncharacterized protein LOC100266884 isoform X2 [Vitis vinifera])

HSP 1 Score: 145.6 bits (366), Expect = 8.7e-32
Identity = 105/224 (46.88%), Postives = 124/224 (55.36%), Query Frame = 1


Query: 1   MAALQILKS-TVSPLSFSQPSFGVQSSRFFSELDSSRRFVRFHGRRRSLRYGCVCRRLSF 60
           MA+LQILKS T  PL  SQ     +S+  FSE DS +R       R S  +    RRL  
Sbjct: 1   MASLQILKSSTFPPLPISQSKISRKSTCLFSEFDSRKRI------RNSAFF--TRRRLRV 60

Query: 61  RCAAQDAHKESNGEEPPESLFMKELKKRGITPTSLLEDTKSTEFELGGETT-GENIDFSG 120
            C  Q+      GEEPPESLFMKELK+RG+TPTSLLED+K   + L  E    E+I FS 
Sbjct: 61  CCGVQE------GEEPPESLFMKELKRRGMTPTSLLEDSKRGAYGLEEEIKLEEDIGFSK 120

Query: 121 TSAVSTEVSKSLSNQRERSMQLNSEGLE-------------------------------- 180
            +A ST+   +LSNQRERSM LNSEGLE                                
Sbjct: 121 RNAYSTDFEANLSNQRERSMALNSEGLEGLIPRAKLLLTIGGTFFLGFGPLILITVAFFC 180

Query: 181 ----FFGSSFVHDGNQTPPSPPPYVYPYAPLEDERISQIAPRVN 187
               +FG +FVHDG++TP  PP Y+ PY  LEDERISQIAPRVN
Sbjct: 181 ALYFYFGPTFVHDGSKTPIMPPQYIDPYELLEDERISQIAPRVN 210

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g02810 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g02810 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KY14_CUCSA	4.6e-56	62.16	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000570 PE=4 SV=1	[more]
D7T3P1_VITVI	3.4e-35	47.77	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0088g00400 PE=4 SV=...	[more]
A0A067LBE0_JATCU	3.0e-31	44.69	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16386 PE=4 SV=1	[more]
A0A061E8B1_THECC	5.1e-31	43.36	Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_007268 PE=4 SV=1	[more]
B9S7Y6_RICCO	6.7e-31	42.79	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1382800 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g02810 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G50020.1	2.4e-24	39.19	unknown protein	[more]

BLAST of Cp4.1LG01g02810 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659108855\|ref\|XP_008454422.1\|	1.9e-58	63.51	PREDICTED: uncharacterized protein LOC103494832 [Cucumis melo]	[more]
gi\|449465109\|ref\|XP_004150271.1\|	6.6e-56	62.16	PREDICTED: uncharacterized protein LOC101221726 [Cucumis sativus]	[more]
gi\|225429185\|ref\|XP_002275810.1\|	4.9e-35	47.77	PREDICTED: uncharacterized protein LOC100266884 isoform X1 [Vitis vinifera]	[more]
gi\|694414259\|ref\|XP_009335356.1\|	1.6e-33	45.25	PREDICTED: uncharacterized protein LOC103928069 [Pyrus x bretschneideri]	[more]
gi\|731384137\|ref\|XP_010648016.1\|	8.7e-32	46.88	PREDICTED: uncharacterized protein LOC100266884 isoform X2 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0032259	methylation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0016740	transferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g02810.1	Cp4.1LG01g02810.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35699	FAMILY NOT NAMED	coord: 5..186 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g02810	Cucsa.298520	Cucumber (Gy14) v1	cgycpeB0781
Cp4.1LG01g02810	CmaCh16G003040	Cucurbita maxima (Rimu)	cmacpeB351
Cp4.1LG01g02810	CmaCh04G004300	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g02810	CmoCh04G004610	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g02810	CmoCh16G003220	Cucurbita moschata (Rifu)	cmocpeB311
Cp4.1LG01g02810	Cla006458	Watermelon (97103) v1	cpewmB382
Cp4.1LG01g02810	Csa4G000570	Cucumber (Chinese Long) v2	cpecuB402
Cp4.1LG01g02810	MELO3C018026	Melon (DHL92) v3.5.1	cpemeB422
Cp4.1LG01g02810	ClCG10G010010	Watermelon (Charleston Gray)	cpewcgB345
Cp4.1LG01g02810	CSPI04G00080	Wild cucumber (PI 183967)	cpecpiB399
Cp4.1LG01g02810	Lsi03G010050	Bottle gourd (USVL1VR-Ls)	cpelsiB340
Cp4.1LG01g02810	MELO3C018026.2	Melon (DHL92) v3.6.1	cpemedB494
Cp4.1LG01g02810	CsaV3_4G000050	Cucumber (Chinese Long) v3	cpecucB0499
Cp4.1LG01g02810	Bhi11G000911	Wax gourd	cpewgoB0477
Cp4.1LG01g02810	CsGy4G000090	Cucumber (Gy14) v2	cgybcpeB504
Cp4.1LG01g02810	Carg08104	Silver-seed gourd	carcpeB0527
Cp4.1LG01g02810	Carg19701	Silver-seed gourd	carcpeB0408

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG01g02810	Cp4.1LG14g04600	Cucurbita pepo (Zucchini)	cpecpeB234

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g02810	Cucurbita pepo (Zucchini)	cpecpeB260
Cp4.1LG01g02810	Cucurbita pepo (Zucchini)	cpecpeB400
Cp4.1LG01g02810	Cucumber (Gy14) v1	cgycpeB0218
Cp4.1LG01g02810	Cucumber (Gy14) v1	cgycpeB0599
Cp4.1LG01g02810	Cucurbita maxima (Rimu)	cmacpeB136
Cp4.1LG01g02810	Cucurbita moschata (Rifu)	cmocpeB114
Cp4.1LG01g02810	Cucurbita moschata (Rifu)	cmocpeB815
Cp4.1LG01g02810	Wild cucumber (PI 183967)	cpecpiB470
Cp4.1LG01g02810	Cucumber (Chinese Long) v2	cpecuB468
Cp4.1LG01g02810	Cucumber (Chinese Long) v2	cpecuB470
Cp4.1LG01g02810	Bottle gourd (USVL1VR-Ls)	cpelsiB325
Cp4.1LG01g02810	Watermelon (Charleston Gray)	cpewcgB378
Cp4.1LG01g02810	Melon (DHL92) v3.5.1	cpemeB394
Cp4.1LG01g02810	Melon (DHL92) v3.5.1	cpemeB435
Cp4.1LG01g02810	Cucumber (Gy14) v2	cgybcpeB805
Cp4.1LG01g02810	Cucumber (Gy14) v2	cgybcpeB941
Cp4.1LG01g02810	Melon (DHL92) v3.6.1	cpemedB457
Cp4.1LG01g02810	Melon (DHL92) v3.6.1	cpemedB507
Cp4.1LG01g02810	Silver-seed gourd	carcpeB1032
Cp4.1LG01g02810	Cucumber (Chinese Long) v3	cpecucB0576
Cp4.1LG01g02810	Cucumber (Chinese Long) v3	cpecucB0582