CmoCh16G003220 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh16G003220
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr16 : 1474016 .. 1474240 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGTTCTGCAAATTCTTAAATCAACTGTCTCTCCTCCTTCAATCTCTCAGCCGAAGTTTGGCTCTCAATCAAGCCGGTTCTTCTCGGAGTTGGATTCCACTAGGAGGTTTACACTGCTCCATGGCCGTCGGAGGAGTTTGCGATATGGCTGCGTTCGTAGAAGGTTGAGTTTCCGTTGTGCTGCTCAGGATTCTGATAAGGAAAGCAACGGCAAGTTTTGA

mRNA sequence

ATGGCTGTTCTGCAAATTCTTAAATCAACTGTCTCTCCTCCTTCAATCTCTCAGCCGAAGTTTGGCTCTCAATCAAGCCGGTTCTTCTCGGAGTTGGATTCCACTAGGAGGTTTACACTGCTCCATGGCCGTCGGAGGAGTTTGCGATATGGCTGCGTTCGTAGAAGGTTGAGTTTCCGTTGTGCTGCTCAGGATTCTGATAAGGAAAGCAACGGCAAGTTTTGA

Coding sequence (CDS)

ATGGCTGTTCTGCAAATTCTTAAATCAACTGTCTCTCCTCCTTCAATCTCTCAGCCGAAGTTTGGCTCTCAATCAAGCCGGTTCTTCTCGGAGTTGGATTCCACTAGGAGGTTTACACTGCTCCATGGCCGTCGGAGGAGTTTGCGATATGGCTGCGTTCGTAGAAGGTTGAGTTTCCGTTGTGCTGCTCAGGATTCTGATAAGGAAAGCAACGGCAAGTTTTGA

Homology

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BLAST of CmoCh16G003220 vs. TrEMBL
Match: A0A0A0KY14_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000570 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.9e-16
Identity = 49/73 (67.12%), Postives = 58/73 (79.45%), Query Frame = 1


Query: 1  MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRFTLLHGRRRSLRYGCVRRRLSFR 60
          MA LQILKS++S PSIS   FGSQS+RF S+ DS     LLHGRRRSLRY CV RR +FR
Sbjct: 1  MAALQILKSSLSLPSISHSNFGSQSTRFVSDFDSL----LLHGRRRSLRYACVYRRFTFR 60

Query: 61 CAAQDSDKESNGK 74
          CAA+D+DKE+NG+
Sbjct: 61 CAAKDTDKETNGE 69

[Close]

BLAST of CmoCh16G003220 vs. NCBI nr
Match: gi|659108855|ref|XP_008454422.1| (PREDICTED: uncharacterized protein LOC103494832 [Cucumis melo])

HSP 1 Score: 98.2 bits (243), Expect = 6.3e-18
Identity = 53/73 (72.60%), Postives = 59/73 (80.82%), Query Frame = 1


Query: 1  MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRFTLLHGRRRSLRYGCVRRRLSFR 60
          MA LQILKST+S PSIS P FGSQS+RFFS+ DS     LLHGRRRSLR  CV RR SFR
Sbjct: 1  MASLQILKSTLSLPSISHPNFGSQSTRFFSDFDSL----LLHGRRRSLRVACVCRRFSFR 60

Query: 61 CAAQDSDKESNGK 74
          CAA+D+DKESNG+
Sbjct: 61 CAAKDADKESNGE 69

[Close]

BLAST of CmoCh16G003220 vs. NCBI nr
Match: gi|449465109|ref|XP_004150271.1| (PREDICTED: uncharacterized protein LOC101221726 [Cucumis sativus])

HSP 1 Score: 92.8 bits (229), Expect = 2.7e-16
Identity = 49/73 (67.12%), Postives = 58/73 (79.45%), Query Frame = 1


Query: 1  MAVLQILKSTVSPPSISQPKFGSQSSRFFSELDSTRRFTLLHGRRRSLRYGCVRRRLSFR 60
          MA LQILKS++S PSIS   FGSQS+RF S+ DS     LLHGRRRSLRY CV RR +FR
Sbjct: 1  MAALQILKSSLSLPSISHSNFGSQSTRFVSDFDSL----LLHGRRRSLRYACVYRRFTFR 60

Query: 61 CAAQDSDKESNGK 74
          CAA+D+DKE+NG+
Sbjct: 61 CAAKDTDKETNGE 69

The following BLAST results are available for this feature:

BLAST of CmoCh16G003220 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh16G003220 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KY14_CUCSA	1.9e-16	67.12	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000570 PE=4 SV=1	[more]

BLAST of CmoCh16G003220 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh16G003220 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659108855\|ref\|XP_008454422.1\|	6.3e-18	72.60	PREDICTED: uncharacterized protein LOC103494832 [Cucumis melo]	[more]
gi\|449465109\|ref\|XP_004150271.1\|	2.7e-16	67.12	PREDICTED: uncharacterized protein LOC101221726 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G003220.1	CmoCh16G003220.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh16G003220	CmaCh16G003040	Cucurbita maxima (Rimu)	cmacmoB322
CmoCh16G003220	Cla006458	Watermelon (97103) v1	cmowmB287
CmoCh16G003220	MELO3C018026	Melon (DHL92) v3.5.1	cmomeB298
CmoCh16G003220	ClCG10G010000	Watermelon (Charleston Gray)	cmowcgB273
CmoCh16G003220	Lsi03G010050	Bottle gourd (USVL1VR-Ls)	cmolsiB294
CmoCh16G003220	Cp4.1LG01g02810	Cucurbita pepo (Zucchini)	cmocpeB311
CmoCh16G003220	Cp4.1LG14g04600	Cucurbita pepo (Zucchini)	cmocpeB307
CmoCh16G003220	MELO3C018026.2	Melon (DHL92) v3.6.1	cmomedB342
CmoCh16G003220	Cla97C10G193020	Watermelon (97103) v2	cmowmbB316
CmoCh16G003220	Bhi11G000911	Wax gourd	cmowgoB0405
CmoCh16G003220	Carg19701	Silver-seed gourd	carcmoB0402
CmoCh16G003220	Carg08104	Silver-seed gourd	carcmoB0509

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh16G003220	CmoCh04G004610	Cucurbita moschata (Rifu)	cmocmoB286

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh16G003220	Cucumber (Chinese Long) v3	cmocucB0385
CmoCh16G003220	Cucumber (Chinese Long) v3	cmocucB0409
CmoCh16G003220	Cucurbita moschata (Rifu)	cmocmoB096
CmoCh16G003220	Cucumber (Gy14) v1	cgycmoB0625
CmoCh16G003220	Cucumber (Gy14) v1	cgycmoB0818
CmoCh16G003220	Cucurbita maxima (Rimu)	cmacmoB133
CmoCh16G003220	Cucurbita maxima (Rimu)	cmacmoB701
CmoCh16G003220	Wild cucumber (PI 183967)	cmocpiB329
CmoCh16G003220	Cucumber (Chinese Long) v2	cmocuB322
CmoCh16G003220	Cucumber (Chinese Long) v2	cmocuB338
CmoCh16G003220	Cucurbita pepo (Zucchini)	cmocpeB321
CmoCh16G003220	Cucumber (Gy14) v2	cgybcmoB465
CmoCh16G003220	Melon (DHL92) v3.6.1	cmomedB317