Cla006458 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla006458
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr10 : 14440284 .. 14440508 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACTCTGCAAATTCTCAAATCAACCGTTTCTCCTCCTTCGATCTCTCAGCCGAATTTTGGTGCCCAATCAAGCCGGTTCTTCTCGGACTTGGATTCCACTAGGAGGTTTGTACTGCTCCATGGACGTCGGAGGAATTTGCGATATGGCTACGTTTGTAGAAGGTTTAGTTTCCGTTGCGCTGCTCAGGATGCTGATAAGGAAAGCAATGGCAAGTTTTAA

mRNA sequence

ATGGCTACTCTGCAAATTCTCAAATCAACCGTTTCTCCTCCTTCGATCTCTCAGCCGAATTTTGGTGCCCAATCAAGCCGGTTCTTCTCGGACTTGGATTCCACTAGGAGGTTTGTACTGCTCCATGGACGTCGGAGGAATTTGCGATATGGCTACGTTTGTAGAAGGTTTAGTTTCCGTTGCGCTGCTCAGGATGCTGATAAGGAAAGCAATGGCAAGTTTTAA

Coding sequence (CDS)

ATGGCTACTCTGCAAATTCTCAAATCAACCGTTTCTCCTCCTTCGATCTCTCAGCCGAATTTTGGTGCCCAATCAAGCCGGTTCTTCTCGGACTTGGATTCCACTAGGAGGTTTGTACTGCTCCATGGACGTCGGAGGAATTTGCGATATGGCTACGTTTGTAGAAGGTTTAGTTTCCGTTGCGCTGCTCAGGATGCTGATAAGGAAAGCAATGGCAAGTTTTAA

Protein sequence

MATLQILKSTVSPPSISQPNFGAQSSRFFSDLDSTRRFVLLHGRRRNLRYGYVCRRFSFRCAAQDADKESNGKF

Homology

[Close]

BLAST of Cla006458 vs. TrEMBL
Match: A0A0A0KY14_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000570 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.2e-17
Identity = 49/73 (67.12%), Postives = 59/73 (80.82%), Query Frame = 1


Query: 1  MATLQILKSTVSPPSISQPNFGAQSSRFFSDLDSTRRFVLLHGRRRNLRYGYVCRRFSFR 60
          MA LQILKS++S PSIS  NFG+QS+RF SD DS    +LLHGRRR+LRY  V RRF+FR
Sbjct: 1  MAALQILKSSLSLPSISHSNFGSQSTRFVSDFDS----LLLHGRRRSLRYACVYRRFTFR 60

Query: 61 CAAQDADKESNGK 74
          CAA+D DKE+NG+
Sbjct: 61 CAAKDTDKETNGE 69

[Close]

BLAST of Cla006458 vs. NCBI nr
Match: gi|659108855|ref|XP_008454422.1| (PREDICTED: uncharacterized protein LOC103494832 [Cucumis melo])

HSP 1 Score: 108.6 bits (270), Expect = 4.7e-21
Identity = 55/73 (75.34%), Postives = 63/73 (86.30%), Query Frame = 1


Query: 1  MATLQILKSTVSPPSISQPNFGAQSSRFFSDLDSTRRFVLLHGRRRNLRYGYVCRRFSFR 60
          MA+LQILKST+S PSIS PNFG+QS+RFFSD DS    +LLHGRRR+LR   VCRRFSFR
Sbjct: 1  MASLQILKSTLSLPSISHPNFGSQSTRFFSDFDS----LLLHGRRRSLRVACVCRRFSFR 60

Query: 61 CAAQDADKESNGK 74
          CAA+DADKESNG+
Sbjct: 61 CAAKDADKESNGE 69

[Close]

BLAST of Cla006458 vs. NCBI nr
Match: gi|449465109|ref|XP_004150271.1| (PREDICTED: uncharacterized protein LOC101221726 [Cucumis sativus])

HSP 1 Score: 95.9 bits (237), Expect = 3.2e-17
Identity = 49/73 (67.12%), Postives = 59/73 (80.82%), Query Frame = 1


Query: 1  MATLQILKSTVSPPSISQPNFGAQSSRFFSDLDSTRRFVLLHGRRRNLRYGYVCRRFSFR 60
          MA LQILKS++S PSIS  NFG+QS+RF SD DS    +LLHGRRR+LRY  V RRF+FR
Sbjct: 1  MAALQILKSSLSLPSISHSNFGSQSTRFVSDFDS----LLLHGRRRSLRYACVYRRFTFR 60

Query: 61 CAAQDADKESNGK 74
          CAA+D DKE+NG+
Sbjct: 61 CAAKDTDKETNGE 69

The following BLAST results are available for this feature:

BLAST of Cla006458 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KY14_CUCSA	2.2e-17	67.12	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000570 PE=4 SV=1	[more]

BLAST of Cla006458 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659108855\|ref\|XP_008454422.1\|	4.7e-21	75.34	PREDICTED: uncharacterized protein LOC103494832 [Cucumis melo]	[more]
gi\|449465109\|ref\|XP_004150271.1\|	3.2e-17	67.12	PREDICTED: uncharacterized protein LOC101221726 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0032259	methylation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0016740	transferase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU42881	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla006458	Cla006458.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU42881	WMU42881	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla006458	Cla97C10G193020	Watermelon (97103) v2	wmwmbB051
Cla006458	MELO3C018026	Melon (DHL92) v3.5.1	mewmB497
Cla006458	ClCG10G010000	Watermelon (Charleston Gray)	wcgwmB051
Cla006458	CSPI04G00080	Wild cucumber (PI 183967)	cpiwmB291
Cla006458	Cucsa.298520	Cucumber (Gy14) v1	cgywmB541
Cla006458	CmaCh16G003040	Cucurbita maxima (Rimu)	cmawmB293
Cla006458	CmoCh04G004610	Cucurbita moschata (Rifu)	cmowmB648
Cla006458	CmoCh16G003220	Cucurbita moschata (Rifu)	cmowmB287
Cla006458	Lsi03G010050	Bottle gourd (USVL1VR-Ls)	lsiwmB240
Cla006458	Cp4.1LG14g04600	Cucurbita pepo (Zucchini)	cpewmB204
Cla006458	Cp4.1LG01g02810	Cucurbita pepo (Zucchini)	cpewmB382
Cla006458	MELO3C018026.2	Melon (DHL92) v3.6.1	medwmB483
Cla006458	Carg19701	Silver-seed gourd	carwmB0287
Cla006458	Carg08104	Silver-seed gourd	carwmB0366
Cla006458	Bhi11G000911	Wax gourd	wgowmB007

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla006458	Cucumber (Chinese Long) v2	cuwmB290
Cla006458	Cucumber (Chinese Long) v2	cuwmB295
Cla006458	Cucumber (Chinese Long) v2	cuwmB575
Cla006458	Bottle gourd (USVL1VR-Ls)	lsiwmB245
Cla006458	Cucumber (Gy14) v2	cgybwmB269
Cla006458	Cucumber (Gy14) v2	cgybwmB538
Cla006458	Melon (DHL92) v3.6.1	medwmB214
Cla006458	Cucumber (Chinese Long) v3	cucwmB300
Cla006458	Cucumber (Chinese Long) v3	cucwmB602
Cla006458	Watermelon (97103) v2	wmwmbB063
Cla006458	Watermelon (97103) v1	wmwmB054
Cla006458	Cucumber (Gy14) v1	cgywmB421
Cla006458	Cucurbita maxima (Rimu)	cmawmB653
Cla006458	Cucurbita moschata (Rifu)	cmowmB478
Cla006458	Wild cucumber (PI 183967)	cpiwmB594
Cla006458	Melon (DHL92) v3.5.1	mewmB217
Cla006458	Watermelon (Charleston Gray)	wcgwmB176