Cp4.1LG13g05380 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG13g05380
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Voltage-dependent L-type calcium channel subunit alpha-1F
Location	Cp4.1LG13 : 5514623 .. 5520419 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACGTGCCTTATTCCAGTAATAATAATACAGTTCTATCCATGGAAAAGACGACACCTGAGTTATTGACTCAGTACGCAATTTCACTATTTATTCACTCTCAAGATTCTCCGGATCCCAAAAGGAATGGCGGAGCCGAACGAGTCCGATGATCGGAATGGCACCGTGCCCGCTCCGGTCGAGGTAGAATATGCAACAACTCACAAATCCAAAGGAATGCGTAGTGAGGATCAGGCCGTTTATGTACCTGTCCGCCGTCTGATCGCCGAGATTTTCTTCCCCGATGAAACTAAGGGTTCTTTTTCTCAACGCGTCAAGGCCTCCGTCGCCGAGAATGGCCATGCCGTTGCACAAGCTTGCAGAAACTTTGGTCACGATATTCTTTGTTGGACTCGCAGGGGCAGTCCTCTTCGAGCGCTCCTTGTTATCTCCGTGAGTATTGCTGATAATTCCAAAATGGAGGTTGTCTGGACTTGTTTTTCTTTTTTTTGGAACAAGAAACGTCGTCTGGACTTGTTTATTTAATTTGAGATGCTCTTCGTTTAGTAATTAATGGATTTTGTGCAACTGTTCGAGATTTTGATTTTATCGTTTGAATAGTACTTTATCTGTTGTTTTTCGGTTTTTGTTTGAAGGCTACGATTGATCTGGACGGGATTTGTTGTTAATAGGAATATATTTCCTCAGTAATGAATACTATTAGAGACAGCTCCGATGTTAATAGATGGGCAACCTTGATAGTAACATGCAGGACTCTCAAACTCTATCTGTTCCTTACAATCATGGAATTTCTTTCTGATGTGATCCTTGTAGTGAAGCCTATTGATACGTTCTTGGTAACAATAGGTTGCCATTGATCATATAATATCTCTAATTCTGTCTACTTTAGGGAAGTTTGTATACAGAACTGTTATAGGATCTTCATCGATACTTTTATGGTTAACGAAGATGTGTGAGAGATTTTAAATTTCTGGATTCCTTATGGAATTCTCTTAATTTCTTTTGTGATTTTGACTCCTTATTTATTTGTGCCAATGGTAAGAGTTCGTTCGTGTTCGTATCTCTTTTATATCGTTACGGGCCACTGATATCTCATGTCCCTATCTCTTAGTATTTCTGTTAATGAAAATTTTCCCATCTAAATAAATATAAATGAGGATAAATTGATAGGAATTGTTACCATCCATGGGAAGCAACTATTGAAAAGATATGTAAAGATATGTAGCACAAGCCAAAGATGTTAGGAATCATGAACCTCCACAATAGTATGATATTGTCCACTTTGAGCATAAACTCTCGTGGTTTTGCTTTAGGCTTCCCCAAAAGGCCTCATACTAATGGAGATGTATTCCTTACTTATAAACCCATGATCATTCCCTAAATTAGCTAATGTGGGCTCACTCAACAAAAGATACTGAATAGTTTCTTACCAATGAATGATTCGTACTCTGTCATTGGTCATCTAACTGCTTTGATGTATTTTGGATCTGTTGCAAGATTTTCACTGTAATAGTCCTCTCTCTATCTTCTACACGCATAGACAGACTGAAGTCCTTTTGTATGCTCTGGCCAGAACCCCTTTAAGTTGTTACTTATATTTGGAATTGTTGCAGGTTGGGACAATTGCTCTTCTTGCATCGACGGGATTGCTCATCTTTCTGCTATTCATTCTAGCAGCAACTCTCAATGCCGTTATTATCTCCCTTCTTGTTTCCTTGGCTGCAGTTGGAGGCTTCTTGGCTCTTTTCTTTGCTTGCATAACAGCTGTGTACATTGGGGCATTAACAGTTGCTTTGTTTTTTATATCTACTGCAACAATCTCAGCCATTGTAGCAGTGGTGATCGCCACAGGTACAAGCACTTATCTAAACCATGTTTCTTGATAACCTCTCATCCCATTGACATAAATCAGTCATATTGGTTTGACGTGGGTCTGTTTCATAAGGAAAACATGAACATATAGTTTGCGGCTTTCTAGCATTATATTTCTGCTTTCTCTATCGTTGAGTTATCCTGTTCTCCACCACACAATTTGAATAGTTTAAGCTAAGAGTTTGTGTGAAATCTATCATCGGTTGGAGAGGGGAACAAAACATTCTTCATAAAGGTGTGAAAATTTCTCCCTAACAGATGCGTTTTAAAAAACCTTAAAAGGAAGCTTGAAATGAAAAGCCTAAAGAAGGCAACATCTGCCGATGGTGAGCTTGAGTTGTTACATAAACTAAACCACACTAAACCAGAGGATCGTGAGGAGGATCGTGAGAAGTTCCATGAAGCCATACACTAGTCAATGACTTTCCTTTGATTTTGTTTCTGTTTCATTCAACTAGACCTTGGGTCAATTGTGCGCTTTTGGGGATAAAATTCTTTCTTTTCTCTAACATTTTGCATTTTCACAACTCAGGTTGGATTGGGTTCTTCTTTATGGTTTGGCTAGCAGTATGGAAAAGTTTTGGTCTTGCTAAGCGGTCGATGAGCGTGAGCAATTCAGCAATTTCAGCATTTTCTTATGCTAGGCGTGCCCACAAAGACTAGGTATGGTTCAAATGAGTTAAATGCATGCTATGAATTGAAATATGTTGCTTCACTCATTTTTTCCTCTCCCGAGAGTCACTTTTTTGAAAGATCTGCTGCATATGTTGTTGAGTTTAAAGGCCTTGGTAGTATAATATCCATAATGTGTGCTTATAATGTAGATATTCTTTTATAAGTATACTATTTTACGGGCTCCTTTATTGGTGAGTGATGAAAGTACCAAACATTGAAGATAGAGCTTCAAAGAAATATAATCGTAACTCAAGTAAAAGAGGATCTTCTTTACCTTGAAATGTTTGAATATGAGAACCAATAAATGATATGGTTGATAATTTACACACCCTTTGCCTTTGCCTTCTGTCTTGTAATAAATTCAAACCAATATCTACATTTGCTTTAAATGCAAGTAATTGGTGATCTTCTCAAATCTTCTGAGAAGTGTGATCCCACCAAAGAGACAAACAAAGTGGCATTTATTACACAAAATTGCCCAATCAATGAACTATCCAATCAATGGATATACTCATTCAAGTCAATTCCTAAATTCACCATAAATTATTGAGCATCCAAACAACACTCTGTTTATTCCTTTTAGAGGAAGAAGACAGATGAAGCTTTTTTCCCTTTGTATGATGACAATTTGATTGGTTGAAGTGGCGTTTGATTTGATTGCAAGGCTGAGGGGTTCAAATACATCAAATTCTTGTGTTTGTGTTCTGAAAATTAGATGTAAAATTGAAAATTTTGAGACCAAATAAAGGTAAATCTTAAAATTTAGAGAGGTAATTGTCATATTTCTCATATCTCTGACAAATATTCATTGCTTTAGTTATAAATTCATTATTTTTAATTTAGCAAAATGTGAATTGTTGACTTCTTAGTTGATTCATTATAAGTCATGGGTTCGTACGAAATATATGATAAAGTGTCTCGTGATTAAAAATTTAACTTTTCCACAGTAATTTTTTTTTACCCTTCTATTTTGATCTTGCCTTTCCTTTTAGGCTGATTAGGTTATAAAATCTAACATTTTTTTACTTCAATCTCATAAATTTAAACTTTTAACTTTCTGGTGGAAGGTATATACTTAACTAAGATATACTATACTCCATTTAATAAAAATTAGTTTTAGTCCCGTTTAGGCGATCGGAAAAATCTCTCTCCCACTCTTAATTCTCCAAACGGGATTCTAACTCCCAAATCTACCTACCCTTTCAACTCAATGGAAATGCTTATGGGAGATGGAATTTGGTAAGAAGACCTGCAAAAAAATGTATCCCATGCACATTAATTATGGACCATACATATCTCAGCAAACTGCCAAATTGAAGCATTTATCTTCCTTTGGGCGACCACAGAGATCACTGACAACGACCCAAAGACTCTGTTGCTCTTCTTCTTCTTTCACGTAAAATATATTATTACGGTCGAAGCCTACCGTTAGTAAATATTGTCTTATTTAAACCTTTTCTTTCGAGTTACCCTCAACATTTTTTAAATGCGTTGGTTAGAGAAAGGTTTCCACACCCTCTCCTCCATTTCTAGTATTTTCGTAGTATAGTTTTCATATCACACTTACCATTCACGAAAAAAGTGAAGAAAAAAAAAAGAAGAGTAATTGTCGCATTGTTAATCAAATTATTCAGTATCAGATCTTACCTCATTCATAAATAATTGGATTCGACCGACAATCCTTTGAAAATTCCCTCCAATTTAATACCCTATTCTGATCATTCCCCATTGGAGAGCCCTTCCCTTTCTTTACTTTCTGCATGAACTTCTTTCCACAACAAACCTTAAAGATGCCCAATACTCAGTCTACTTCTTCTTCTTCTTCTTCTTCTTCTTTTCTTGATCTTTCTCTTCAAATTAGTCCTCCCATTAATTCAACCTTCCCTACCTCTATTGAAACCTCCAATGGAGTTCTTGGGGCTCATAAATTCAATCAAATAACTAATTGGGTTTGGCTTTTGGATCATCATCTTCCACCTTCTGAAGATCATCATGGCCTCTTCAACCAAATTCATGGCTTCCCAATTCATCCCAATAATCCTTCATCTTTCTCTTGGAAACACTCCAAACAAATGCCTTCTCCTTCTTCTTCAATCTCGTACTCGAACATCTCTAGCTTCCGGTACCAGCTGAACGCTGGCCGGTCGTCAACGGGGGCGAGAGGACGAGGCGTGAGGGCGCCGAGGATGCGGTGGACGAGGAGCCTCCATGCTCAGTTTGTTCATGCTGTTGAGCTTCTTGGCGGCCATGAAAGTAGTACTACTTTTTAAGCTTCATTTTCAAATCTTCTGTTTTTTCCTTCTAATTTGCTTTCATGTTATGTTGTGTTAGGAGCTACGCCTAAATCAGTTCTAGAGCTCATGGATGTGAAGGATCTAACATTGGCTCACGTCAAAAGCCATTTACAGGTTTTCTTTTTCTTTTCTCCTTTCTAATTTAGTATATTAAATTCAAACTAAGCTCGGCGAGTATGCTTTCCACTCCTGTGTTCGTGAGGTTGGTCCGATCGATTTTCGACATTTTTTAAAACTCAATTTGATTGTTTAAGCGGTAAGATTTTTAATCTAACTCAATTCAACTATAAAATTGGATAGGGATTCCTGTCGTGAGAATCATTTATTTAATTTTTTATTTTTAATAAAAATAAAATGTTAATGGTTAGAATGTTAAACATTTCATTATATTTATTTAAAGATCGTTAAAAATTATTTTTGAGAAAGTTAGATATTTATATATATATATATATATATTTATTTATTTATTTATTGAAATCATGATCATAATACAACTTTCTACATGATAATTATAATTATGAATCCTTAAGCTCTTTCTCTTTAATTTTCAGCTTTTATAAGCTAAGAAAAGCAAATGGGTATCCATATTTTTTTCTCAATGACTTCTTTTTGTAGATGTTCCGCGCTCATAAGACGACCCACAAGCCTCCAGCTTCTCCACGTAATTACTCACCTGCCTCATTCGAGATTTATTTATAGATCTAAAAGTTTAAGTTGACTGAGTTCTAATGTGTTTAAAGGTTAGTCGGAGAGTAGCTTCGACTCTCTCGAGGATGATATGCGTCCTTAGCTTCAATGGGGAATGCCACAGTAGATGGAAACCTATGACTCCTTTCGACTCGAGGGGACATGGGCTATGGTTGCTCTAAGAGTCCTCTTTGCTCTATGAATTCTACGAGGTGAATTGTTATGTTTCAATGTTGATTAAATTGGGAGAGTCGTTGCCCAAATTAGA

mRNA sequence

ATGCACATTCTCCGGATCCCAAAAGGAATGGCGGAGCCGAACGAGTCCGATGATCGGAATGGCACCGTGCCCGCTCCGGTCGAGGTAGAATATGCAACAACTCACAAATCCAAAGGAATGCGTAGTGAGGATCAGGCCGTTTATGTACCTGTCCGCCGTCTGATCGCCGAGATTTTCTTCCCCGATGAAACTAAGGGTTCTTTTTCTCAACGCGTCAAGGCCTCCGTCGCCGAGAATGGCCATGCCGTTGCACAAGCTTGCAGAAACTTTGGTCACGATATTCTTTGTTGGACTCGCAGGGGCAGTCCTCTTCGAGCGCTCCTTGTTATCTCCGTTGGGACAATTGCTCTTCTTGCATCGACGGGATTGCTCATCTTTCTGCTATTCATTCTAGCAGCAACTCTCAATGCCGTTATTATCTCCCTTCTTGTTTCCTTGGCTGCAGTTGGAGGCTTCTTGGCTCTTTTCTTTGCTTGCATAACAGCTGTGTACATTGGGGCATTAACAGTTGCTTTGTTTTTTATATCTACTGCAACAATCTCAGCCATTGTAGCAGTGGTGATCGCCACAGGTTGGATTGGGTTCTTCTTTATGGTTTGGCTAGCAGTATGGAAAAGTTTTGGTCTTGCTAAGCGGTCGATGAGCGTGAGCAATTCAGCAATTTCAGCATTTTCTTATGCTAGGCGTGCCCACAAAGACTAGGAGCTACGCCTAAATCAGTTCTAGAGCTCATGGATGTGAAGGATCTAACATTGGCTCACGTCAAAAGCCATTTACAGATGTTCCGCGCTCATAAGACGACCCACAAGCCTCCAGCTTCTCCACGTTAGTCGGAGAGTAGCTTCGACTCTCTCGAGGATGATATGCGTCCTTAGCTTCAATGGGGAATGCCACAGTAGATGGAAACCTATGACTCCTTTCGACTCGAGGGGACATGGGCTATGGTTGCTCTAAGAGTCCTCTTTGCTCTATGAATTCTACGAGGTGAATTGTTATGTTTCAATGTTGATTAAATTGGGAGAGTCGTTGCCCAAATTAGA

Coding sequence (CDS)

ATGCACATTCTCCGGATCCCAAAAGGAATGGCGGAGCCGAACGAGTCCGATGATCGGAATGGCACCGTGCCCGCTCCGGTCGAGGTAGAATATGCAACAACTCACAAATCCAAAGGAATGCGTAGTGAGGATCAGGCCGTTTATGTACCTGTCCGCCGTCTGATCGCCGAGATTTTCTTCCCCGATGAAACTAAGGGTTCTTTTTCTCAACGCGTCAAGGCCTCCGTCGCCGAGAATGGCCATGCCGTTGCACAAGCTTGCAGAAACTTTGGTCACGATATTCTTTGTTGGACTCGCAGGGGCAGTCCTCTTCGAGCGCTCCTTGTTATCTCCGTTGGGACAATTGCTCTTCTTGCATCGACGGGATTGCTCATCTTTCTGCTATTCATTCTAGCAGCAACTCTCAATGCCGTTATTATCTCCCTTCTTGTTTCCTTGGCTGCAGTTGGAGGCTTCTTGGCTCTTTTCTTTGCTTGCATAACAGCTGTGTACATTGGGGCATTAACAGTTGCTTTGTTTTTTATATCTACTGCAACAATCTCAGCCATTGTAGCAGTGGTGATCGCCACAGGTTGGATTGGGTTCTTCTTTATGGTTTGGCTAGCAGTATGGAAAAGTTTTGGTCTTGCTAAGCGGTCGATGAGCGTGAGCAATTCAGCAATTTCAGCATTTTCTTATGCTAGGCGTGCCCACAAAGACTAG

Protein sequence

MHILRIPKGMAEPNESDDRNGTVPAPVEVEYATTHKSKGMRSEDQAVYVPVRRLIAEIFFPDETKGSFSQRVKASVAENGHAVAQACRNFGHDILCWTRRGSPLRALLVISVGTIALLASTGLLIFLLFILAATLNAVIISLLVSLAAVGGFLALFFACITAVYIGALTVALFFISTATISAIVAVVIATGWIGFFFMVWLAVWKSFGLAKRSMSVSNSAISAFSYARRAHKD

Homology

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BLAST of Cp4.1LG13g05380 vs. TrEMBL
Match: A0A0A0KNC3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G427940 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 1.6e-82
Identity = 179/224 (79.91%), Postives = 195/224 (87.05%), Query Frame = 1


Query: 10  MAEPNESDDRNGTVPAPVEVEYATTHKSKGMRSEDQAVYVPVRRLIAEIFFPDETKGSFS 69
           MAE ++SDDRN TVP  VE E A++H+SKG+ +EDQ VY P+RRLIAEIFFPDE KGS  
Sbjct: 1   MAEAHDSDDRNTTVP--VEEEDASSHQSKGVCTEDQTVYEPLRRLIAEIFFPDEIKGSLF 60

Query: 70  QRVKASVAENGHAVAQACRNFGHDILCWTRRGSPLRALLVISVGTIALLASTGLLIFLLF 129
            RVK SV +NG AVAQACRNFG D+L WTRRGSPLRALLVISVGTI LLA TG LIFL F
Sbjct: 61  HRVKVSVTDNGPAVAQACRNFGRDVLSWTRRGSPLRALLVISVGTIVLLAMTGSLIFLFF 120

Query: 130 ILAATLNAVIISLLVSLAAVGGFLALFFACITAVYIGALTVALFFISTATISAIVAVVIA 189
            LAATLNA+IISLLVSLAAVGGFLALFFAC+TA+Y+GAL VALF ISTATISAIVAVVIA
Sbjct: 121 FLAATLNAIIISLLVSLAAVGGFLALFFACVTAIYVGALGVALFVISTATISAIVAVVIA 180

Query: 190 TGWIGFFFMVWLAVWKSFGLAKRSMSVSNSAISAFSYARRAHKD 234
            GWIGFF MVWLA+ KSFGLAKRS+S SNSAISAFSYARRAHKD
Sbjct: 181 AGWIGFFCMVWLAIRKSFGLAKRSVSASNSAISAFSYARRAHKD 222

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BLAST of Cp4.1LG13g05380 vs. TrEMBL
Match: V4SA05_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029179mg PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 2.3e-52
Identity = 132/224 (58.93%), Postives = 164/224 (73.21%), Query Frame = 1


Query: 15  ESDDRNGT---VPAPVEVEYATTHKSKGMRSEDQAVYVPVRRLIAEIFFPDETK--GSFS 74
           ESD  NG    V  PV+ + AT  K KG+  +D+ +Y  + R+   I FPD      SFS
Sbjct: 8   ESDGLNGVGVGVGVPVDDDDATK-KYKGIPCDDETLYGVIHRMFTMILFPDSNSRVASFS 67

Query: 75  --QRVKASVAENGHAVAQACRNFGHDILCWTRRGSPLRALLVISVGTIALLASTGLLIFL 134
             +R+K S++ENG  + QA RN G  +L WTRRGSP+RAL VISVGTI LL  TGLL+F+
Sbjct: 68  LLRRIKISLSENGSHLRQASRNTGRKVLLWTRRGSPIRALFVISVGTITLLTLTGLLVFM 127

Query: 135 LFILAATLNAVIISLLVSLAAVGGFLALFFACITAVYIGALTVALFFISTATISAIVAVV 194
           LF LAAT+NA+IISLLVSLAA GGFLALFFAC+TA+YIGAL+VA F IS AT+SAIVAV+
Sbjct: 128 LFFLAATINAIIISLLVSLAAAGGFLALFFACLTAIYIGALSVAAFVISAATVSAIVAVL 187

Query: 195 IATGWIGFFFMVWLAVWKSFGLAKRSMSVSNSAISAFSYARRAH 232
           IA+GWIGFF ++WLA  KS GLAK  + ++ SA+S +S AR AH
Sbjct: 188 IASGWIGFFCVIWLATKKSVGLAKHFLGMTGSALSTYSRARVAH 230

[Close]

BLAST of Cp4.1LG13g05380 vs. TrEMBL
Match: M5WTH6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009705mg PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 2.3e-52
Identity = 135/231 (58.44%), Postives = 165/231 (71.43%), Query Frame = 1


Query: 10  MAEPNESDDRNGTVPAPV----EVEYATTHKSKGMRSEDQAVYVPVRRLIAEIFFPDETK 69
           MAEP  +   NG V   V    E+    TH+       ++ ++    RLI  IFFP  T 
Sbjct: 57  MAEPYGT---NGAVDVDVTDDGEINTKATHR-------EETLFGVFHRLIDAIFFPGSTS 116

Query: 70  GSFS----QRVKASVAENGHAVAQACRNFGHDILCWTRRGSPLRALLVISVGTIALLAST 129
              +    +R+K S+AEN   + +A RN G ++L WTRRGSPLRALLVISVGTI L++ T
Sbjct: 117 AGTAAPLFRRIKNSLAENCPLLREASRNSGRNVLLWTRRGSPLRALLVISVGTITLISLT 176

Query: 130 GLLIFLLFILAATLNAVIISLLVSLAAVGGFLALFFACITAVYIGALTVALFFISTATIS 189
           GLL+F+LF LAATLNAVIISLL+SLAA GGFLALFFAC+TA+YIGAL+VA+F IS  TIS
Sbjct: 177 GLLVFMLFFLAATLNAVIISLLLSLAAAGGFLALFFACVTAIYIGALSVAVFVISATTIS 236

Query: 190 AIVAVVIATGWIGFFFMVWLAVWKSFGLAKRSMSVSNSAISAFSYARRAHK 233
           AI AV+I TGWIGFF++VWLA  KS GLAK+S SV+ SAISA+SY R AHK
Sbjct: 237 AIAAVLITTGWIGFFWIVWLAAKKSLGLAKQSFSVTGSAISAYSYGRHAHK 277

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BLAST of Cp4.1LG13g05380 vs. TrEMBL
Match: A0A067KI39_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10524 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 8.6e-52
Identity = 123/201 (61.19%), Postives = 153/201 (76.12%), Query Frame = 1


Query: 36  KSKGMRSEDQAVYVPVRRLIAEIFFPDETKG----SFSQRVKASVAENGHAVAQACRNFG 95
           + KG+  +D+ +Y  +  L+A IF P+        SF QR+K SV+ENG  +  A +N G
Sbjct: 19  EKKGVHRKDETLYSVLHSLLAMIFVPESGSSVAAESFLQRIKISVSENGPLLKDATKNTG 78

Query: 96  HDILCWTRRGSPLRALLVISVGTIALLASTGLLIFLLFILAATLNAVIISLLVSLAAVGG 155
             +L WTRRGSPLRALLVISVGTI LL  TGLL+F+LF LAAT+NA+++SLL+SLAA GG
Sbjct: 79  RKVLLWTRRGSPLRALLVISVGTITLLTLTGLLVFMLFFLAATVNAIVVSLLISLAAAGG 138

Query: 156 FLALFFACITAVYIGALTVALFFISTATISAIVAVVIATGWIGFFFMVWLAVWKSFGLAK 215
           FLALFFAC+TAVYIGAL+VALF IST  ISAIVAV+IATGWIGFF+ VWL   KS G+AK
Sbjct: 139 FLALFFACVTAVYIGALSVALFVISTTAISAIVAVLIATGWIGFFWTVWLVTKKSVGVAK 198

Query: 216 RSMSVSNSAISAFSYARRAHK 233
            S+S++ SAISA+S AR   +
Sbjct: 199 HSLSMTGSAISAYSSARHLRR 219

[Close]

BLAST of Cp4.1LG13g05380 vs. TrEMBL
Match: W9S3F9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_007805 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 9.6e-51
Identity = 120/203 (59.11%), Postives = 155/203 (76.35%), Query Frame = 1


Query: 34  THKSKGMRSEDQAVYVPVRRLIAEIFFPD---ETKGS-FSQRVKASVAENGHAVAQACRN 93
           T  ++  R +D+ +   V RLI+EI FPD   +T G+   QR+K SVAENG  + +A RN
Sbjct: 8   TGANRAHRRDDETLNGVVHRLISEILFPDASGDTAGAPLLQRIKTSVAENGPLLPEASRN 67

Query: 94  FGHDILCWTRRGSPLRALLVISVGTIALLASTGLLIFLLFILAATLNAVIISLLVSLAAV 153
              ++L WTRRGSPLRALLVISVGTI LLA TGLL+F++F L AT NA+++SLL+SLAA 
Sbjct: 68  TASNVLLWTRRGSPLRALLVISVGTITLLALTGLLVFMVFFLVATFNAIVVSLLISLAAA 127

Query: 154 GGFLALFFACITAVYIGALTVALFFISTATISAIVAVVIATGWIGFFFMVWLAVWKSFGL 213
           GGFLALFFAC+TA+YIGAL++A F IST  I+ I+AV+IA GWIGFF  VWL + KS GL
Sbjct: 128 GGFLALFFACVTAIYIGALSIAAFVISTTAITTIIAVLIAAGWIGFFCTVWLVIKKSLGL 187

Query: 214 AKRSMSVSNSAISAFSYARRAHK 233
           AK S+S+++SA+SA+S AR  H+
Sbjct: 188 AKHSLSMTSSALSAYSTARHTHQ 210

[Close]

BLAST of Cp4.1LG13g05380 vs. TAIR10
Match: AT5G16550.1 (AT5G16550.1 unknown protein)

HSP 1 Score: 179.9 bits (455), Expect = 1.8e-45
Identity = 109/192 (56.77%), Postives = 139/192 (72.40%), Query Frame = 1


Query: 45  QAVYVPVRRLIAEIFFPDETKG---SFSQRVKASVAENGHAVAQACRNFGHDILCWTRRG 104
           +++Y  +   I  I FPD   G   SF +RV+ SVAENG  + +A    G +IL WTRRG
Sbjct: 49  KSLYSLICLTIGSILFPDSKTGDASSFLERVRNSVAENGPKLREASERTGREILLWTRRG 108

Query: 105 SPLRALLVISVGTIALLASTGLLIFLLFILAATLNAVIISLLVSLAAVGGFLALFFACIT 164
           S LRALLVI++GTI LL +  L++F LF +AAT NA+IISLL+SLA  GGFLALFF C+T
Sbjct: 109 SSLRALLVITMGTIVLLTTMALVVFTLFFVAATANAIIISLLISLAVAGGFLALFFLCLT 168

Query: 165 AVYIGALTVALFFISTATISAIVAVVIATGWIGFFFMVWLAVWKSFGLAKRSMSVSNSAI 224
            VYIGAL+VA F ISTAT+SA+V+V+IA+GWIGFF+ VWL    S  LAK+S+SV  SAI
Sbjct: 169 GVYIGALSVAAFVISTATVSAVVSVLIASGWIGFFYAVWLGTRGSLRLAKQSVSVVGSAI 228

Query: 225 SAFSYARRAHKD 234
           S  + +R  H+D
Sbjct: 229 SGNTISRHQHQD 240

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BLAST of Cp4.1LG13g05380 vs. NCBI nr
Match: gi|659126433|ref|XP_008463179.1| (PREDICTED: uncharacterized protein LOC103501388 [Cucumis melo])

HSP 1 Score: 317.8 bits (813), Expect = 1.6e-83
Identity = 180/224 (80.36%), Postives = 196/224 (87.50%), Query Frame = 1


Query: 10  MAEPNESDDRNGTVPAPVEVEYATTHKSKGMRSEDQAVYVPVRRLIAEIFFPDETKGSFS 69
           MAE ++SD RN TVP  VE E A++H+SKG+  +DQ VY P+RRLIAEIFFPDE KGS  
Sbjct: 1   MAEAHDSDARNTTVP--VEEEDASSHQSKGLSIDDQTVYEPLRRLIAEIFFPDEIKGSLF 60

Query: 70  QRVKASVAENGHAVAQACRNFGHDILCWTRRGSPLRALLVISVGTIALLASTGLLIFLLF 129
            RVK SVA+NG AV QACRNFGHD+L WTRRGSPLRALLVISVGTI LLA TG LIFLLF
Sbjct: 61  HRVKVSVADNGPAVGQACRNFGHDVLSWTRRGSPLRALLVISVGTIVLLAMTGSLIFLLF 120

Query: 130 ILAATLNAVIISLLVSLAAVGGFLALFFACITAVYIGALTVALFFISTATISAIVAVVIA 189
            LAATLNA+IISLLVSLAAVGGFLALFFAC+TA+Y+GAL VALF ISTATISAIVAVVIA
Sbjct: 121 FLAATLNAIIISLLVSLAAVGGFLALFFACVTAIYVGALGVALFVISTATISAIVAVVIA 180

Query: 190 TGWIGFFFMVWLAVWKSFGLAKRSMSVSNSAISAFSYARRAHKD 234
            GWIGFFFMVWLA+ KSFGLAKRS+S SNSAISAFSYARRAHKD
Sbjct: 181 AGWIGFFFMVWLAICKSFGLAKRSVSASNSAISAFSYARRAHKD 222

[Close]

BLAST of Cp4.1LG13g05380 vs. NCBI nr
Match: gi|449445067|ref|XP_004140295.1| (PREDICTED: uncharacterized protein LOC101212066 [Cucumis sativus])

HSP 1 Score: 313.9 bits (803), Expect = 2.3e-82
Identity = 179/224 (79.91%), Postives = 195/224 (87.05%), Query Frame = 1


Query: 10  MAEPNESDDRNGTVPAPVEVEYATTHKSKGMRSEDQAVYVPVRRLIAEIFFPDETKGSFS 69
           MAE ++SDDRN TVP  VE E A++H+SKG+ +EDQ VY P+RRLIAEIFFPDE KGS  
Sbjct: 1   MAEAHDSDDRNTTVP--VEEEDASSHQSKGVCTEDQTVYEPLRRLIAEIFFPDEIKGSLF 60

Query: 70  QRVKASVAENGHAVAQACRNFGHDILCWTRRGSPLRALLVISVGTIALLASTGLLIFLLF 129
            RVK SV +NG AVAQACRNFG D+L WTRRGSPLRALLVISVGTI LLA TG LIFL F
Sbjct: 61  HRVKVSVTDNGPAVAQACRNFGRDVLSWTRRGSPLRALLVISVGTIVLLAMTGSLIFLFF 120

Query: 130 ILAATLNAVIISLLVSLAAVGGFLALFFACITAVYIGALTVALFFISTATISAIVAVVIA 189
            LAATLNA+IISLLVSLAAVGGFLALFFAC+TA+Y+GAL VALF ISTATISAIVAVVIA
Sbjct: 121 FLAATLNAIIISLLVSLAAVGGFLALFFACVTAIYVGALGVALFVISTATISAIVAVVIA 180

Query: 190 TGWIGFFFMVWLAVWKSFGLAKRSMSVSNSAISAFSYARRAHKD 234
            GWIGFF MVWLA+ KSFGLAKRS+S SNSAISAFSYARRAHKD
Sbjct: 181 AGWIGFFCMVWLAIRKSFGLAKRSVSASNSAISAFSYARRAHKD 222

[Close]

BLAST of Cp4.1LG13g05380 vs. NCBI nr
Match: gi|567862776|ref|XP_006424042.1| (hypothetical protein CICLE_v10029179mg [Citrus clementina])

HSP 1 Score: 213.8 bits (543), Expect = 3.3e-52
Identity = 132/224 (58.93%), Postives = 164/224 (73.21%), Query Frame = 1


Query: 15  ESDDRNGT---VPAPVEVEYATTHKSKGMRSEDQAVYVPVRRLIAEIFFPDETK--GSFS 74
           ESD  NG    V  PV+ + AT  K KG+  +D+ +Y  + R+   I FPD      SFS
Sbjct: 8   ESDGLNGVGVGVGVPVDDDDATK-KYKGIPCDDETLYGVIHRMFTMILFPDSNSRVASFS 67

Query: 75  --QRVKASVAENGHAVAQACRNFGHDILCWTRRGSPLRALLVISVGTIALLASTGLLIFL 134
             +R+K S++ENG  + QA RN G  +L WTRRGSP+RAL VISVGTI LL  TGLL+F+
Sbjct: 68  LLRRIKISLSENGSHLRQASRNTGRKVLLWTRRGSPIRALFVISVGTITLLTLTGLLVFM 127

Query: 135 LFILAATLNAVIISLLVSLAAVGGFLALFFACITAVYIGALTVALFFISTATISAIVAVV 194
           LF LAAT+NA+IISLLVSLAA GGFLALFFAC+TA+YIGAL+VA F IS AT+SAIVAV+
Sbjct: 128 LFFLAATINAIIISLLVSLAAAGGFLALFFACLTAIYIGALSVAAFVISAATVSAIVAVL 187

Query: 195 IATGWIGFFFMVWLAVWKSFGLAKRSMSVSNSAISAFSYARRAH 232
           IA+GWIGFF ++WLA  KS GLAK  + ++ SA+S +S AR AH
Sbjct: 188 IASGWIGFFCVIWLATKKSVGLAKHFLGMTGSALSTYSRARVAH 230

[Close]

BLAST of Cp4.1LG13g05380 vs. NCBI nr
Match: gi|595939790|ref|XP_007215780.1| (hypothetical protein PRUPE_ppa009705mg [Prunus persica])

HSP 1 Score: 213.8 bits (543), Expect = 3.3e-52
Identity = 135/231 (58.44%), Postives = 165/231 (71.43%), Query Frame = 1


Query: 10  MAEPNESDDRNGTVPAPV----EVEYATTHKSKGMRSEDQAVYVPVRRLIAEIFFPDETK 69
           MAEP  +   NG V   V    E+    TH+       ++ ++    RLI  IFFP  T 
Sbjct: 57  MAEPYGT---NGAVDVDVTDDGEINTKATHR-------EETLFGVFHRLIDAIFFPGSTS 116

Query: 70  GSFS----QRVKASVAENGHAVAQACRNFGHDILCWTRRGSPLRALLVISVGTIALLAST 129
              +    +R+K S+AEN   + +A RN G ++L WTRRGSPLRALLVISVGTI L++ T
Sbjct: 117 AGTAAPLFRRIKNSLAENCPLLREASRNSGRNVLLWTRRGSPLRALLVISVGTITLISLT 176

Query: 130 GLLIFLLFILAATLNAVIISLLVSLAAVGGFLALFFACITAVYIGALTVALFFISTATIS 189
           GLL+F+LF LAATLNAVIISLL+SLAA GGFLALFFAC+TA+YIGAL+VA+F IS  TIS
Sbjct: 177 GLLVFMLFFLAATLNAVIISLLLSLAAAGGFLALFFACVTAIYIGALSVAVFVISATTIS 236

Query: 190 AIVAVVIATGWIGFFFMVWLAVWKSFGLAKRSMSVSNSAISAFSYARRAHK 233
           AI AV+I TGWIGFF++VWLA  KS GLAK+S SV+ SAISA+SY R AHK
Sbjct: 237 AIAAVLITTGWIGFFWIVWLAAKKSLGLAKQSFSVTGSAISAYSYGRHAHK 277

[Close]

BLAST of Cp4.1LG13g05380 vs. NCBI nr
Match: gi|568869206|ref|XP_006487819.1| (PREDICTED: uncharacterized protein LOC102620494 [Citrus sinensis])

HSP 1 Score: 212.6 bits (540), Expect = 7.3e-52
Identity = 132/221 (59.73%), Postives = 165/221 (74.66%), Query Frame = 1


Query: 15  ESDDRNGTVPAPVEVEYATTHKSKGMRSEDQAVYVPVRRLIAEIFFPDETK--GSFS--Q 74
           ESD  NG V  PV+ + AT  K KG+  +D+ +Y  + R+   I FPD      SFS  +
Sbjct: 8   ESDGLNG-VGVPVDDDDATK-KYKGIPCDDETLYGVIHRMFTMILFPDSNSRVASFSLLR 67

Query: 75  RVKASVAENGHAVAQACRNFGHDILCWTRRGSPLRALLVISVGTIALLASTGLLIFLLFI 134
           R+K S++ENG  + QA RN G  +L WTRRGSP+RAL VISVGTI LL  TGLL+F+LF 
Sbjct: 68  RIKISLSENGSHLRQASRNTGRKVLLWTRRGSPIRALFVISVGTITLLTLTGLLVFMLFF 127

Query: 135 LAATLNAVIISLLVSLAAVGGFLALFFACITAVYIGALTVALFFISTATISAIVAVVIAT 194
           LAAT+NA+IISLLVSLAA GGFLALFFAC+TA+YIGAL+VA F IS ATISAIVAV++A+
Sbjct: 128 LAATINAIIISLLVSLAAAGGFLALFFACLTAIYIGALSVAAFVISAATISAIVAVLVAS 187

Query: 195 GWIGFFFMVWLAVWKSFGLAKRSMSVSNSAISAFSYARRAH 232
           GWIGFF ++ LA  KS GLAK  +S++ SA+S +S+AR AH
Sbjct: 188 GWIGFFCVILLATKKSVGLAKHFLSMTGSALSTYSHARVAH 226

The following BLAST results are available for this feature:

BLAST of Cp4.1LG13g05380 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG13g05380 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KNC3_CUCSA	1.6e-82	79.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G427940 PE=4 SV=1	[more]
V4SA05_9ROSI	2.3e-52	58.93	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029179mg PE=4 SV=1	[more]
M5WTH6_PRUPE	2.3e-52	58.44	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009705mg PE=4 SV=1	[more]
A0A067KI39_JATCU	8.6e-52	61.19	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10524 PE=4 SV=1	[more]
W9S3F9_9ROSA	9.6e-51	59.11	Uncharacterized protein OS=Morus notabilis GN=L484_007805 PE=4 SV=1	[more]

BLAST of Cp4.1LG13g05380 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G16550.1	1.8e-45	56.77	unknown protein	[more]

BLAST of Cp4.1LG13g05380 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659126433\|ref\|XP_008463179.1\|	1.6e-83	80.36	PREDICTED: uncharacterized protein LOC103501388 [Cucumis melo]	[more]
gi\|449445067\|ref\|XP_004140295.1\|	2.3e-82	79.91	PREDICTED: uncharacterized protein LOC101212066 [Cucumis sativus]	[more]
gi\|567862776\|ref\|XP_006424042.1\|	3.3e-52	58.93	hypothetical protein CICLE_v10029179mg [Citrus clementina]	[more]
gi\|595939790\|ref\|XP_007215780.1\|	3.3e-52	58.44	hypothetical protein PRUPE_ppa009705mg [Prunus persica]	[more]
gi\|568869206\|ref\|XP_006487819.1\|	7.3e-52	59.73	PREDICTED: uncharacterized protein LOC102620494 [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG13g05380.1	Cp4.1LG13g05380.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35508	FAMILY NOT NAMED	coord: 8..233 score: 8.3
None	No IPR available	PANTHER	PTHR35508:SF1	SUBFAMILY NOT NAMED	coord: 8..233 score: 8.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG13g05380	Cucsa.001330	Cucumber (Gy14) v1	cgycpeB0703
Cp4.1LG13g05380	CmaCh15G007520	Cucurbita maxima (Rimu)	cmacpeB305
Cp4.1LG13g05380	CmaCh04G022840	Cucurbita maxima (Rimu)	cmacpeB705
Cp4.1LG13g05380	CmoCh04G023880	Cucurbita moschata (Rifu)	cmocpeB657
Cp4.1LG13g05380	CmoCh15G007770	Cucurbita moschata (Rifu)	cmocpeB268
Cp4.1LG13g05380	Cla009149	Watermelon (97103) v1	cpewmB185
Cp4.1LG13g05380	Csa5G427940	Cucumber (Chinese Long) v2	cpecuB187
Cp4.1LG13g05380	MELO3C025122	Melon (DHL92) v3.5.1	cpemeB158
Cp4.1LG13g05380	ClCG01G008740	Watermelon (Charleston Gray)	cpewcgB166
Cp4.1LG13g05380	CSPI05G15240	Wild cucumber (PI 183967)	cpecpiB188
Cp4.1LG13g05380	Lsi09G009130	Bottle gourd (USVL1VR-Ls)	cpelsiB130
Cp4.1LG13g05380	MELO3C025122.2	Melon (DHL92) v3.6.1	cpemedB185
Cp4.1LG13g05380	CsaV3_5G024270	Cucumber (Chinese Long) v3	cpecucB0225
Cp4.1LG13g05380	Bhi12G001053	Wax gourd	cpewgoB0218
Cp4.1LG13g05380	CsGy5G015060	Cucumber (Gy14) v2	cgybcpeB609
Cp4.1LG13g05380	Carg01454	Silver-seed gourd	carcpeB1157
Cp4.1LG13g05380	Carg18278	Silver-seed gourd	carcpeB0746

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG13g05380	Cp4.1LG01g19840	Cucurbita pepo (Zucchini)	cpecpeB199

The following block(s) are covering this gene:

None