Carg18278 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18278
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Voltage-dependent L-type calcium channel subunit
Location	Cucurbita_argyrosperma_scaffold_120 : 392004 .. 396095 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAATTGCCGGTCAATCAAATGCAACACATCTATCCATCGAAAAGTCGACACCCGAGTTCTGGACTCTGCACACAGTTTCACTATTGATTGATTCACGAGATTCGCCGGATCCCCTAAAAAATGGCGGAGAAGTACGATTCCGATGATCGGAATGGCACCGTGCCGGTTGAAGAACAAGATAGAACCAGTCACAAGTCCAAAGGAGTGTATAATATGGATCGGACAGTTTATGAAACCCTCCGCCGTCTGATCGCTGAGGTTTTCTCCCCCGATAAAGCTAAGGGTTCTTCATTGTTCCAGCGCGTTAAGGTCTCCATCACCGAGAATGGCCCTTCCGTTGAAAAGGCCTGCAGAAACATTGGTCGCGATGTTCTTTGCTGGACTCGCAGGGGCAGTCCTCTTAGAGCACTCCTTGTTATCTCCGTGAGTATTACTGATAATTCCAAAACTGGTGGTTTTCTGGACTTGTTTATTTTGTTTGAGATGCTTTCTATTCTGTACTTAATGGATTATATGAGTTGACTGTTGGGGATTTTGATTTTATCGCTTAAATGGTATTATCTCTGTTGTTTTTTGGTTCTTGTTTAATGGCAACGATTGATCTGGGCATGATTTGTTGTTAGTAGGAATTTTTTTTTTCTTAATAATGTATATTGTTTAACAATTTGATCAATGGCAAGTGCGGTGAGAGCTCGAGTGGTGGTGTTTTTGACGATCGGAGAAACTAATTTTCTGAGGCAATTTCCTCTTGTTTTGACCCATTTGCCAATGTTTTCAGCCTTCTTTCTTTTTGTAAACTCATTTTCAGCCACCATCTTCTGCTGTTTGGTCTTGTGGAGGGAGTTGATTTCTTCTTCCATGGCCATACGTTGCATTGGACCTGTAAGACTGGAGTGCTACTTAGGTGTTTCACTAATTCCCAATTGTCTTTGCCCTTGTTAATGGATGAGCAACCTTCTGAAGATGTAGCCCATTTTTCTATCCATTCCATAAACCAAGGAGGGTTTTGACTTTATGAATTGAGTGAAGGTTCTTGACTTTGTTCGAGTATTTGCTATCCTTCAGATTTTTCTTTTCTTGTTTCGTCTTGAATAGACTATATCTTCTTTCTGATGCCTAGTTTCTTGAGTTTCATTGTTCGGCTTCCTTGTTGTTATAAGACCTATCAACTATGTGTAAAATTGGAGTGGTTTTGTCTGAGATTGTTTTGGGGCCAGGTTCCTTTGCGTACAGCTCTTAGGAGCTTTGATTTCGATAGTAGTGCTTGGTACCAAAGATGGTGACAGGAAAAATGGAATTTTTTGTTCATGAGAGTAATATTCTTTAACCCTTTTGGTTTAGGGGCATAGCCTTGAAGGATATACCTAATAGCCCAAGGTTCAAGTTTACTTCTTTTAGGAAAGTGATTATGGACAAAGGCAGTATAACAAACAAATTCAAGAAGGAATGTAGGATAGTAACATGCAGGCTCTCAAACGCTGTTTGTCTTACAATCAAGGAGTTTCGTTCTAATTGTGAATCCTGTTGTGCATTTTTACAAATCCTATTACTGAAGCATATTGGATATGTTTTTGGTAACTATAGGTTGGCGTTAATCCTATGATATTTCTAATTCTGTCTACTTTTGGGAATGTGGATAGGGAAGAGTTATAGGATCTTTATTGGTACTCTCATGGTTGAAGAAGATATGTGAAAGATTTTAAAACTTCTAGATTCTGTACGGAGTTCTCTGATGTTCTTTGTGATTTTGACACATTTTTTATTTGTGCCAATTGTAAGAGTTGTTTGTATCCTTTTAGCATTGTTATGGGTCGTTGATATCTCACCTCCCCATCTCTGAGGACTTCTGCTAACGAAAAATTTCCTATCTAAAAAAACTATAAATTTTGAGAAATTGATAGACATTTTAGTAACAGTGGAAAGAAAAAGTTCTGGTCTTGAGGTTCGACTCAAGGACGGTGCAATTGTTGGAAATATATATATATATATATATATATAAAACAGAAGTCAAGGGTACCAAATAGGTTTGATACTGATGAATGATGTGTACTGTAGCGTAGGTCCTCTGACTGCTTTTATCTGTTTTCTATCTATTGCAAGATTTTTGTTGTAATAGTCCTCTCTATCTTTCAGGCGCAGATAAACTGAAGTCCTTTTTATGTACTCACAAGCTCCCTTCTTAGTTGTTACTTACATTTGGAATTGCTGCAGGTTGGGACAATTGCTCTTCTTGCATTGACGGGATTGCTCATCTTTCTGCTATTCTTTCTGGCAGCAACTTTCAACGCCATTGTTATTTCTCTTCTTGTTTCCTTGGCTGCAGTTGGAGGTTTCTTGGCACTTTTCTTTGCTTGCATAACGGCTGTTTACATCGGAGCATTAACAGTTGCTTTGTTTGTTATATCCACTGCAACAATCTCAGCAATTGTAGCAGTGGTGATCGCCGCAGGTAGCAATAATATATACGCTTATCTAAGCCATGTTTCTCGAAAACCTCTTAACCTGTTGATATGAACGTGTACATGTTGGTTTGGCATGGTTCGGTCTCCTCTTAAGGAATAACATGTGCATCAGTTTGGAGCTTTCTAGCTAATATGCTTCTGCTTTCTCTTTCGTTGGGTTCTCTACCACGAATTGAATTGTTTTCTGAATCATTTGTGTGCATTTAGCTTTAAGGGTACGGATGAAAATGTTAGGAACCACGAATCTCCACAATGGTATGATATTGTCCACTTTGAGTATAAGCCCTCATGACTTTTCTTTTGGTTTCCCCAAAATGCCTCATACCAATGGAGATAGTATTCATTCTTTATAAACCCATGGTCAACCCTTTAATTAGTCAATGTGGACTCCTCTCCCAACAATTCTCAACAATCCTCTCTTCGAACAAAGTACACCATAGAGTCTACCCTGATGCTTATGAAGCCCTCAAACAATCTCCCCTTAATCGAGGCTCGACTCCTTCTCTGGAGTCCTCGAACAAAGTACACGTTTTGTTCGACACTTGAGTCACTTTTGACTACACCTTCGAGGTTCACAACTTCTTTGTTCGACATTTGAAGATTCTATTGATATGGCTAAGTTAAGGGCATGACTCTGATACCACGATAGGAACCACGAATCGTCACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTGATGACTTTTCTTTTGGTTTCTCCAAAAGGCCTCATACCAATGGAGATAGTATTCCTTATTTATAAACTCATGATCAACCCTTTAATTAGCTGATGTGAGACTCCTCTCTCAACAATTCTCAACAGAAAATGTTGTAAGCTATTGATTGAACTAGCGGATCAAGAGAAGTTTCGCTTTCATTTAGACAAAGCCATACTCTAGTCAATGACTTCCCATTGATTTTGTTTGTCTTCATGAGAGTAGACCTTGTGTCAATTGTGCACTACTGGAATTTCCGTACTTCAATTCTTTCTTTGCTCTAACATCTTGCATCTTCAAAATTCAGGTTGGATTGGGTTCTTCTGTGTGGTATGGCTAGCAATACGAAAAAGTTTTGGTATTGCTAAGCAGTCGATGAGCGCGGGCAGTTCAGCAATTTCAGCATTTTCTCATGCTAGACGTGCCCACAAAGATTAGGTATGTTTTTAGATGAGTTAAGTGAATGCTTTGAACTGGTGTATGTTATTGCTTCACACGTGTTTTCCCCTACTGAGAGTTACTTTTTGGAGGATCTGCTGCATATGTTGCGACTTTGAAGTTGTTCTAGGTAGTGAAACCATAACATGTATTTGTAATGTAAATATTCTGTTAAATGTGTTGAGTCATACAATATAGTCCTACTATTTTATGGGTTCCTTTATTGGTGATGAAAGTATCTAGATTGAAGATAGAATGTCATAATCTAAGTAATATTTTGGCTTTAAGTTACTGCTATGTACTGTAATTGTGAAAATTTACAAGGATTTAAATTTGAAGTGTTCAATGAGGTGATGACTGATTGAATGAATTTGGATTTATGAAGTTCAAGGTTAGAAACATGAATTTTATGTTTGTATTGTGTAAATCTTAAGTTCGTGTAATATGTATTTCATTTGGAAGAGGTTAACC

mRNA sequence

TAATTGCCGGTCAATCAAATGCAACACATCTATCCATCGAAAAGTCGACACCCGAGTTCTGGACTCTGCACACAGTTTCACTATTGATTGATTCACGAGATTCGCCGGATCCCCTAAAAAATGGCGGAGAAGTACGATTCCGATGATCGGAATGGCACCGTGCCGGTTGAAGAACAAGATAGAACCAGTCACAAGTCCAAAGGAGTGTATAATATGGATCGGACAGTTTATGAAACCCTCCGCCGTCTGATCGCTGAGGTTTTCTCCCCCGATAAAGCTAAGGGTTCTTCATTGTTCCAGCGCGTTAAGGTCTCCATCACCGAGAATGGCCCTTCCGTTGAAAAGGCCTGCAGAAACATTGGTCGCGATGTTCTTTGCTGGACTCGCAGGGGCAGTCCTCTTAGAGCACTCCTTGTTATCTCCGTTGGGACAATTGCTCTTCTTGCATTGACGGGATTGCTCATCTTTCTGCTATTCTTTCTGGCAGCAACTTTCAACGCCATTGTTATTTCTCTTCTTGTTTCCTTGGCTGCAGTTGGAGGTTTCTTGGCACTTTTCTTTGCTTGCATAACGGCTGTTTACATCGGAGCATTAACAGTTGCTTTGTTTGTTATATCCACTGCAACAATCTCAGCAATTGTAGCAGTGGTGATCGCCGCAGGTTGGATTGGGTTCTTCTGTGTGGTATGGCTAGCAATACGAAAAAGTTTTGGTATTGCTAAGCAGTCGATGAGCGCGGGCAGTTCAGCAATTTCAGCATTTTCTCATGCTAGACGTGCCCACAAAGATTAGGTATGTTTTTAGATGAGTTAAGTGAATGCTTTGAACTGGTGTATGTTATTGCTTCACACGTGTTTTCCCCTACTGAGAGTTACTTTTTGGAGGATCTGCTGCATATGTTGCGACTTTGAAGTTGTTCTAGGTAGTGAAACCATAACATGTATTTGTAATGTAAATATTCTGTTAAATGTGTTGAGTCATACAATATAGTCCTACTATTTTATGGGTTCCTTTATTGGTGATGAAAGTATCTAGATTGAAGATAGAATGTCATAATCTAAGTAATATTTTGGCTTTAAGTTACTGCTATGTACTGTAATTGTGAAAATTTACAAGGATTTAAATTTGAAGTGTTCAATGAGGTGATGACTGATTGAATGAATTTGGATTTATGAAGTTCAAGGTTAGAAACATGAATTTTATGTTTGTATTGTGTAAATCTTAAGTTCGTGTAATATGTATTTCATTTGGAAGAGGTTAACC

Coding sequence (CDS)

ATGGCGGAGAAGTACGATTCCGATGATCGGAATGGCACCGTGCCGGTTGAAGAACAAGATAGAACCAGTCACAAGTCCAAAGGAGTGTATAATATGGATCGGACAGTTTATGAAACCCTCCGCCGTCTGATCGCTGAGGTTTTCTCCCCCGATAAAGCTAAGGGTTCTTCATTGTTCCAGCGCGTTAAGGTCTCCATCACCGAGAATGGCCCTTCCGTTGAAAAGGCCTGCAGAAACATTGGTCGCGATGTTCTTTGCTGGACTCGCAGGGGCAGTCCTCTTAGAGCACTCCTTGTTATCTCCGTTGGGACAATTGCTCTTCTTGCATTGACGGGATTGCTCATCTTTCTGCTATTCTTTCTGGCAGCAACTTTCAACGCCATTGTTATTTCTCTTCTTGTTTCCTTGGCTGCAGTTGGAGGTTTCTTGGCACTTTTCTTTGCTTGCATAACGGCTGTTTACATCGGAGCATTAACAGTTGCTTTGTTTGTTATATCCACTGCAACAATCTCAGCAATTGTAGCAGTGGTGATCGCCGCAGGTTGGATTGGGTTCTTCTGTGTGGTATGGCTAGCAATACGAAAAAGTTTTGGTATTGCTAAGCAGTCGATGAGCGCGGGCAGTTCAGCAATTTCAGCATTTTCTCATGCTAGACGTGCCCACAAAGATTAG

Protein sequence

MAEKYDSDDRNGTVPVEEQDRTSHKSKGVYNMDRTVYETLRRLIAEVFSPDKAKGSSLFQRVKVSITENGPSVEKACRNIGRDVLCWTRRGSPLRALLVISVGTIALLALTGLLIFLLFFLAATFNAIVISLLVSLAAVGGFLALFFACITAVYIGALTVALFVISTATISAIVAVVIAAGWIGFFCVVWLAIRKSFGIAKQSMSAGSSAISAFSHARRAHKD

Homology

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BLAST of Carg18278 vs. NCBI nr
Match: XP_023514904.1 (uncharacterized protein LOC111779077 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 396.4 bits (1017), Expect = 6.6e-107
Identity = 220/223 (98.65%), Postives = 223/223 (100.00%), Query Frame = 0


Query: 1   MAEKYDSDDRNGTVPVEEQDRTSHKSKGVYNMDRTVYETLRRLIAEVFSPDKAKGSSLFQ 60
           MAEKYDSDDRNGTVPVEEQDRTSHKSKGVYNMD+TVYETLRRLIAEVFSPDKAKGSSLFQ
Sbjct: 1   MAEKYDSDDRNGTVPVEEQDRTSHKSKGVYNMDQTVYETLRRLIAEVFSPDKAKGSSLFQ 60

Query: 61  RVKVSITENGPSVEKACRNIGRDVLCWTRRGSPLRALLVISVGTIALLALTGLLIFLLFF 120
           RVKVSITENGP+VEKACRNIGRDVLCWTRRGSPLRALLVISVGTIALLALTGLLIFLLFF
Sbjct: 61  RVKVSITENGPAVEKACRNIGRDVLCWTRRGSPLRALLVISVGTIALLALTGLLIFLLFF 120

Query: 121 LAATFNAIVISLLVSLAAVGGFLALFFACITAVYIGALTVALFVISTATISAIVAVVIAA 180
           LAATFNA+VISLLVSLAAVGGFLALFFACITAVYIGALTVALFVISTATISAIVAVVIAA
Sbjct: 121 LAATFNAVVISLLVSLAAVGGFLALFFACITAVYIGALTVALFVISTATISAIVAVVIAA 180

Query: 181 GWIGFFCVVWLAIRKSFGIAKQSMSAGSSAISAFSHARRAHKD 224
           GWIGFFCVVWLAIRKSFGIAKQSMSAGSSAISAFSHARRAHKD
Sbjct: 181 GWIGFFCVVWLAIRKSFGIAKQSMSAGSSAISAFSHARRAHKD 223

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BLAST of Carg18278 vs. NCBI nr
Match: XP_022922733.1 (uncharacterized protein LOC111430635 [Cucurbita moschata])

HSP 1 Score: 395.6 bits (1015), Expect = 1.1e-106
Identity = 219/223 (98.21%), Postives = 223/223 (100.00%), Query Frame = 0


Query: 1   MAEKYDSDDRNGTVPVEEQDRTSHKSKGVYNMDRTVYETLRRLIAEVFSPDKAKGSSLFQ 60
           MAEKYDSDDRNGTVPV+EQDRTSHKSKGVYNMDRTVYETLRRLIAEVFSPDKAKGSSLFQ
Sbjct: 1   MAEKYDSDDRNGTVPVDEQDRTSHKSKGVYNMDRTVYETLRRLIAEVFSPDKAKGSSLFQ 60

Query: 61  RVKVSITENGPSVEKACRNIGRDVLCWTRRGSPLRALLVISVGTIALLALTGLLIFLLFF 120
           RVKVSITENGP+VEKACRNIGRDVLCWTRRGSPLRALLVISVGTIALLALTGLLIFLLFF
Sbjct: 61  RVKVSITENGPAVEKACRNIGRDVLCWTRRGSPLRALLVISVGTIALLALTGLLIFLLFF 120

Query: 121 LAATFNAIVISLLVSLAAVGGFLALFFACITAVYIGALTVALFVISTATISAIVAVVIAA 180
           LAATFNA+VISLLVSLAAVGGFLALFFACITAVYIGALTVALFVISTATISAIVAVVIAA
Sbjct: 121 LAATFNAVVISLLVSLAAVGGFLALFFACITAVYIGALTVALFVISTATISAIVAVVIAA 180

Query: 181 GWIGFFCVVWLAIRKSFGIAKQSMSAGSSAISAFSHARRAHKD 224
           GWIGFFCVVWLA+RKSFGIAKQSMSAGSSAISAFSHARRAHKD
Sbjct: 181 GWIGFFCVVWLAMRKSFGIAKQSMSAGSSAISAFSHARRAHKD 223

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BLAST of Carg18278 vs. NCBI nr
Match: XP_022990837.1 (uncharacterized protein LOC111487608 [Cucurbita maxima])

HSP 1 Score: 381.3 bits (978), Expect = 2.2e-102
Identity = 212/223 (95.07%), Postives = 220/223 (98.65%), Query Frame = 0


Query: 1   MAEKYDSDDRNGTVPVEEQDRTSHKSKGVYNMDRTVYETLRRLIAEVFSPDKAKGSSLFQ 60
           MAEKYDSDDRNGTVPV+EQ+RTSHKSKG+++ D+TVYETLRRLIAEVFSPDKAKGSSLFQ
Sbjct: 1   MAEKYDSDDRNGTVPVDEQERTSHKSKGLHSEDQTVYETLRRLIAEVFSPDKAKGSSLFQ 60

Query: 61  RVKVSITENGPSVEKACRNIGRDVLCWTRRGSPLRALLVISVGTIALLALTGLLIFLLFF 120
           RVKVSITENGP+VEKACRNIG DVLCWTRRGSPLRALLVISVGTIALLALTGLLIFLLFF
Sbjct: 61  RVKVSITENGPAVEKACRNIGCDVLCWTRRGSPLRALLVISVGTIALLALTGLLIFLLFF 120

Query: 121 LAATFNAIVISLLVSLAAVGGFLALFFACITAVYIGALTVALFVISTATISAIVAVVIAA 180
           LAATFNA+VISLLVSLAAVGGFLALFFACITAVYIGALTVALFVISTATISAIVAVVIAA
Sbjct: 121 LAATFNAVVISLLVSLAAVGGFLALFFACITAVYIGALTVALFVISTATISAIVAVVIAA 180

Query: 181 GWIGFFCVVWLAIRKSFGIAKQSMSAGSSAISAFSHARRAHKD 224
           GWIGFFCVVWLAIRKSFGIAKQSMSAGSS ISAFSHARRAHKD
Sbjct: 181 GWIGFFCVVWLAIRKSFGIAKQSMSAGSSVISAFSHARRAHKD 223

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BLAST of Carg18278 vs. NCBI nr
Match: XP_008463179.1 (PREDICTED: uncharacterized protein LOC103501388 [Cucumis melo])

HSP 1 Score: 307.8 bits (787), Expect = 3.1e-80
Identity = 176/223 (78.92%), Postives = 199/223 (89.24%), Query Frame = 0


Query: 1   MAEKYDSDDRNGTVPVEEQDRTSHKSKGVYNMDRTVYETLRRLIAEVFSPDKAKGSSLFQ 60
           MAE +DSD RN TVPVEE+D +SH+SKG+   D+TVYE LRRLIAE+F PD+ KG SLF 
Sbjct: 1   MAEAHDSDARNTTVPVEEEDASSHQSKGLSIDDQTVYEPLRRLIAEIFFPDEIKG-SLFH 60

Query: 61  RVKVSITENGPSVEKACRNIGRDVLCWTRRGSPLRALLVISVGTIALLALTGLLIFLLFF 120
           RVKVS+ +NGP+V +ACRN G DVL WTRRGSPLRALLVISVGTI LLA+TG LIFLLFF
Sbjct: 61  RVKVSVADNGPAVGQACRNFGHDVLSWTRRGSPLRALLVISVGTIVLLAMTGSLIFLLFF 120

Query: 121 LAATFNAIVISLLVSLAAVGGFLALFFACITAVYIGALTVALFVISTATISAIVAVVIAA 180
           LAAT NAI+ISLLVSLAAVGGFLALFFAC+TA+Y+GAL VALFVISTATISAIVAVVIAA
Sbjct: 121 LAATLNAIIISLLVSLAAVGGFLALFFACVTAIYVGALGVALFVISTATISAIVAVVIAA 180

Query: 181 GWIGFFCVVWLAIRKSFGIAKQSMSAGSSAISAFSHARRAHKD 224
           GWIGFF +VWLAI KSFG+AK+S+SA +SAISAFS+ARRAHKD
Sbjct: 181 GWIGFFFMVWLAICKSFGLAKRSVSASNSAISAFSYARRAHKD 222

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BLAST of Carg18278 vs. NCBI nr
Match: XP_022939299.1 (uncharacterized protein LOC111445256 [Cucurbita moschata])

HSP 1 Score: 300.4 bits (768), Expect = 4.9e-78
Identity = 173/225 (76.89%), Postives = 194/225 (86.22%), Query Frame = 0


Query: 1   MAEKYDSDDRNGTV--PVEEQDRTSHKSKGVYNMDRTVYETLRRLIAEVFSPDKAKGSSL 60
           MAE Y+SDDRNGTV  PVE +  TSHKSKG+ + D+ VY  +RRLIAE+F PD+ KG S 
Sbjct: 1   MAEPYESDDRNGTVPAPVEVEYATSHKSKGMRSEDQAVYVLVRRLIAEIFFPDETKG-SF 60

Query: 61  FQRVKVSITENGPSVEKACRNIGRDVLCWTRRGSPLRALLVISVGTIALLALTGLLIFLL 120
            QRVK S+ ENGP+V +ACRN G D+LCWTRRGSPLRALLVISVGTI+LLA TGLLIFLL
Sbjct: 61  SQRVKASVAENGPAVAQACRNFGHDILCWTRRGSPLRALLVISVGTISLLASTGLLIFLL 120

Query: 121 FFLAATFNAIVISLLVSLAAVGGFLALFFACITAVYIGALTVALFVISTATISAIVAVVI 180
           F LAAT NA++ISLLVSLAAVGGFL LFFACITAVYIGALTVALF ISTATISAIVAVVI
Sbjct: 121 FILAATLNAVIISLLVSLAAVGGFLTLFFACITAVYIGALTVALFFISTATISAIVAVVI 180

Query: 181 AAGWIGFFCVVWLAIRKSFGIAKQSMSAGSSAISAFSHARRAHKD 224
           A GWIGFF +VWLA+ KSFG+AK+SMS  +SAISAFS+ARRAHKD
Sbjct: 181 ATGWIGFFFMVWLAVWKSFGLAKRSMSVSNSAISAFSYARRAHKD 224

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BLAST of Carg18278 vs. TAIR10
Match: AT5G16550.1 (unknown protein)

HSP 1 Score: 183.0 bits (463), Expect = 2.1e-46
Identity = 108/192 (56.25%), Postives = 139/192 (72.40%), Query Frame = 0


Query: 34  RTVYETLRRLIAEVFSPDKAKG--SSLFQRVKVSITENGPSVEKACRNIGRDVLCWTRRG 93
           +++Y  +   I  +  PD   G  SS  +RV+ S+ ENGP + +A    GR++L WTRRG
Sbjct: 49  KSLYSLICLTIGSILFPDSKTGDASSFLERVRNSVAENGPKLREASERTGREILLWTRRG 108

Query: 94  SPLRALLVISVGTIALLALTGLLIFLLFFLAATFNAIVISLLVSLAAVGGFLALFFACIT 153
           S LRALLVI++GTI LL    L++F LFF+AAT NAI+ISLL+SLA  GGFLALFF C+T
Sbjct: 109 SSLRALLVITMGTIVLLTTMALVVFTLFFVAATANAIIISLLISLAVAGGFLALFFLCLT 168

Query: 154 AVYIGALTVALFVISTATISAIVAVVIAAGWIGFFCVVWLAIRKSFGIAKQSMSAGSSAI 213
            VYIGAL+VA FVISTAT+SA+V+V+IA+GWIGFF  VWL  R S  +AKQS+S   SAI
Sbjct: 169 GVYIGALSVAAFVISTATVSAVVSVLIASGWIGFFYAVWLGTRGSLRLAKQSVSVVGSAI 228

Query: 214 SAFSHARRAHKD 224
           S  + +R  H+D
Sbjct: 229 SGNTISRHQHQD 240

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BLAST of Carg18278 vs. TrEMBL
Match: tr|A0A1S3CIL4|A0A1S3CIL4_CUCME (uncharacterized protein LOC103501388 OS=Cucumis melo OX=3656 GN=LOC103501388 PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 2.0e-80
Identity = 176/223 (78.92%), Postives = 199/223 (89.24%), Query Frame = 0


Query: 1   MAEKYDSDDRNGTVPVEEQDRTSHKSKGVYNMDRTVYETLRRLIAEVFSPDKAKGSSLFQ 60
           MAE +DSD RN TVPVEE+D +SH+SKG+   D+TVYE LRRLIAE+F PD+ KG SLF 
Sbjct: 1   MAEAHDSDARNTTVPVEEEDASSHQSKGLSIDDQTVYEPLRRLIAEIFFPDEIKG-SLFH 60

Query: 61  RVKVSITENGPSVEKACRNIGRDVLCWTRRGSPLRALLVISVGTIALLALTGLLIFLLFF 120
           RVKVS+ +NGP+V +ACRN G DVL WTRRGSPLRALLVISVGTI LLA+TG LIFLLFF
Sbjct: 61  RVKVSVADNGPAVGQACRNFGHDVLSWTRRGSPLRALLVISVGTIVLLAMTGSLIFLLFF 120

Query: 121 LAATFNAIVISLLVSLAAVGGFLALFFACITAVYIGALTVALFVISTATISAIVAVVIAA 180
           LAAT NAI+ISLLVSLAAVGGFLALFFAC+TA+Y+GAL VALFVISTATISAIVAVVIAA
Sbjct: 121 LAATLNAIIISLLVSLAAVGGFLALFFACVTAIYVGALGVALFVISTATISAIVAVVIAA 180

Query: 181 GWIGFFCVVWLAIRKSFGIAKQSMSAGSSAISAFSHARRAHKD 224
           GWIGFF +VWLAI KSFG+AK+S+SA +SAISAFS+ARRAHKD
Sbjct: 181 GWIGFFFMVWLAICKSFGLAKRSVSASNSAISAFSYARRAHKD 222

[Close]

BLAST of Carg18278 vs. TrEMBL
Match: tr|A0A0A0KNC3|A0A0A0KNC3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G427940 PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 2.3e-76
Identity = 167/223 (74.89%), Postives = 189/223 (84.75%), Query Frame = 0


Query: 1   MAEKYDSDDRNGTVPVEEQDRTSHKSKGVYNMDRTVYETLRRLIAEVFSPDKAKGSSLFQ 60
           MAE +DSDDRN TVPVEE+D +SH+SKGV   D+TVYE LRRLIAE+F PD+ KG SLF 
Sbjct: 1   MAEAHDSDDRNTTVPVEEEDASSHQSKGVCTEDQTVYEPLRRLIAEIFFPDEIKG-SLFH 60

Query: 61  RVKVSITENGPSVEKACRNIGRDVLCWTRRGSPLRALLVISVGTIALLALTGLLIFLLFF 120
           RVKVS+T+NGP+V +ACRN GRDVL WTRRGSPLRALLVISVGTI LLA+TG LIFL FF
Sbjct: 61  RVKVSVTDNGPAVAQACRNFGRDVLSWTRRGSPLRALLVISVGTIVLLAMTGSLIFLFFF 120

Query: 121 LAATFNAIVISLLVSLAAVGGFLALFFACITAVYIGALTVALFVISTATISAIVAVVIAA 180
           LAAT NAI+              ALFFAC+TA+Y+GAL VALFVISTATISAIVAVVIAA
Sbjct: 121 LAATLNAIIXXXXXXXXXXXXXXALFFACVTAIYVGALGVALFVISTATISAIVAVVIAA 180

Query: 181 GWIGFFCVVWLAIRKSFGIAKQSMSAGSSAISAFSHARRAHKD 224
           GWIGFFC+VWLAIRKSFG+AK+S+SA +SAISAFS+ARRAHKD
Sbjct: 181 GWIGFFCMVWLAIRKSFGLAKRSVSASNSAISAFSYARRAHKD 222

[Close]

BLAST of Carg18278 vs. TrEMBL
Match: tr|A0A067KI39|A0A067KI39_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_10524 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 4.6e-56
Identity = 132/204 (64.71%), Postives = 157/204 (76.96%), Query Frame = 0


Query: 25  KSKGVYNMDRTVYETLRRLIAEVFSPDKAK---GSSLFQRVKVSITENGPSVEKACRNIG 84
           + KGV+  D T+Y  L  L+A +F P+        S  QR+K+S++ENGP ++ A +N G
Sbjct: 19  EKKGVHRKDETLYSVLHSLLAMIFVPESGSSVAAESFLQRIKISVSENGPLLKDATKNTG 78

Query: 85  RDVLCWTRRGSPLRALLVISVGTIALLALTGLLIFLLFFLAATFNAIVISLLVSLAAVGG 144
           R VL WTRRGSPLRALLVISVGTI LL LTGLL+F+LFFLAAT NAIV+SLL+SLAA GG
Sbjct: 79  RKVLLWTRRGSPLRALLVISVGTITLLTLTGLLVFMLFFLAATVNAIVVSLLISLAAAGG 138

Query: 145 FLALFFACITAVYIGALTVALFVISTATISAIVAVVIAAGWIGFFCVVWLAIRKSFGIAK 204
           FLALFFAC+TAVYIGAL+VALFVIST  ISAIVAV+IA GWIGFF  VWL  +KS G+AK
Sbjct: 139 FLALFFACVTAVYIGALSVALFVISTTAISAIVAVLIATGWIGFFWTVWLVTKKSVGVAK 198

Query: 205 QSMSAGSSAISAFS---HARRAHK 223
            S+S   SAISA+S   H RR H+
Sbjct: 199 HSLSMTGSAISAYSSARHLRRYHE 222

[Close]

BLAST of Carg18278 vs. TrEMBL
Match: tr|W9S3F9|W9S3F9_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_007805 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 6.6e-55
Identity = 127/210 (60.48%), Postives = 160/210 (76.19%), Query Frame = 0


Query: 16  VEEQDRTSHKSKGVYNMDRTVYETLRRLIAEVFSPDKA---KGSSLFQRVKVSITENGPS 75
           +EE    +  ++     D T+   + RLI+E+  PD +    G+ L QR+K S+ ENGP 
Sbjct: 1   MEENSNDTGANRAHRRDDETLNGVVHRLISEILFPDASGDTAGAPLLQRIKTSVAENGPL 60

Query: 76  VEKACRNIGRDVLCWTRRGSPLRALLVISVGTIALLALTGLLIFLLFFLAATFNAIVISL 135
           + +A RN   +VL WTRRGSPLRALLVISVGTI LLALTGLL+F++FFL ATFNAIV+SL
Sbjct: 61  LPEASRNTASNVLLWTRRGSPLRALLVISVGTITLLALTGLLVFMVFFLVATFNAIVVSL 120

Query: 136 LVSLAAVGGFLALFFACITAVYIGALTVALFVISTATISAIVAVVIAAGWIGFFCVVWLA 195
           L+SLAA GGFLALFFAC+TA+YIGAL++A FVIST  I+ I+AV+IAAGWIGFFC VWL 
Sbjct: 121 LISLAAAGGFLALFFACVTAIYIGALSIAAFVISTTAITTIIAVLIAAGWIGFFCTVWLV 180

Query: 196 IRKSFGIAKQSMSAGSSAISAFSHARRAHK 223
           I+KS G+AK S+S  SSA+SA+S AR  H+
Sbjct: 181 IKKSLGLAKHSLSMTSSALSAYSTARHTHQ 210

[Close]

BLAST of Carg18278 vs. TrEMBL
Match: tr|M5WTH6|M5WTH6_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa009705mg PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.6e-53
Identity = 132/225 (58.67%), Postives = 163/225 (72.44%), Query Frame = 0


Query: 1   MAEKYDSDDRNGTVPVEEQDRTSHKSKGVYNMDRTVYETLRRLIAEVFSPDKAKGSS--- 60
           MAE Y +   NG V V+  D     +K  +  + T++    RLI  +F P      +   
Sbjct: 57  MAEPYGT---NGAVDVDVTDDGEINTKATHR-EETLFGVFHRLIDAIFFPGSTSAGTAAP 116

Query: 61  LFQRVKVSITENGPSVEKACRNIGRDVLCWTRRGSPLRALLVISVGTIALLALTGLLIFL 120
           LF+R+K S+ EN P + +A RN GR+VL WTRRGSPLRALLVISVGTI L++LTGLL+F+
Sbjct: 117 LFRRIKNSLAENCPLLREASRNSGRNVLLWTRRGSPLRALLVISVGTITLISLTGLLVFM 176

Query: 121 LFFLAATFNAIVISLLVSLAAVGGFLALFFACITAVYIGALTVALFVISTATISAIVAVV 180
           LFFLAAT NA++ISL  SLAA GGFLALFFAC+TA+YIGAL+VA+FVIS  TISAI AV+
Sbjct: 177 LFFLAATLNAVIISLXXSLAAAGGFLALFFACVTAIYIGALSVAVFVISATTISAIAAVL 236

Query: 181 IAAGWIGFFCVVWLAIRKSFGIAKQSMSAGSSAISAFSHARRAHK 223
           I  GWIGFF +VWLA +KS G+AKQS S   SAISA+S+ R AHK
Sbjct: 237 ITTGWIGFFWIVWLAAKKSLGLAKQSFSVTGSAISAYSYGRHAHK 277

The following BLAST results are available for this feature:

BLAST of Carg18278 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023514904.1	6.6e-107	98.65	uncharacterized protein LOC111779077 [Cucurbita pepo subsp. pepo]	[more]
XP_022922733.1	1.1e-106	98.21	uncharacterized protein LOC111430635 [Cucurbita moschata]	[more]
XP_022990837.1	2.2e-102	95.07	uncharacterized protein LOC111487608 [Cucurbita maxima]	[more]
XP_008463179.1	3.1e-80	78.92	PREDICTED: uncharacterized protein LOC103501388 [Cucumis melo]	[more]
XP_022939299.1	4.9e-78	76.89	uncharacterized protein LOC111445256 [Cucurbita moschata]	[more]

BLAST of Carg18278 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G16550.1	2.1e-46	56.25	unknown protein	[more]

BLAST of Carg18278 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg18278 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CIL4\|A0A1S3CIL4_CUCME	2.0e-80	78.92	uncharacterized protein LOC103501388 OS=Cucumis melo OX=3656 GN=LOC103501388 PE=...	[more]
tr\|A0A0A0KNC3\|A0A0A0KNC3_CUCSA	2.3e-76	74.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G427940 PE=4 SV=1	[more]
tr\|A0A067KI39\|A0A067KI39_JATCU	4.6e-56	64.71	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_10524 PE=4 SV=1	[more]
tr\|W9S3F9\|W9S3F9_9ROSA	6.6e-55	60.48	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_007805 PE=4 SV=1	[more]
tr\|M5WTH6\|M5WTH6_PRUPE	1.6e-53	58.67	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa009705mg PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18278-RA	Carg18278-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR35508	FAMILY NOT NAMED	coord: 10..222
None	No IPR available	PANTHER	PTHR35508:SF1	SUBFAMILY NOT NAMED	coord: 10..222

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg18278	Cla009149	Watermelon (97103) v1	carwmB0524
Carg18278	Csa5G427940	Cucumber (Chinese Long) v2	carcuB0556
Carg18278	MELO3C025122	Melon (DHL92) v3.5.1	carmeB0531
Carg18278	ClCG01G008740	Watermelon (Charleston Gray)	carwcgB0510
Carg18278	CSPI05G15240	Wild cucumber (PI 183967)	carcpiB0562
Carg18278	Cucsa.001330	Cucumber (Gy14) v1	carcgyB0608
Carg18278	CmaCh04G022840	Cucurbita maxima (Rimu)	carcmaB0738
Carg18278	CmaCh15G007520	Cucurbita maxima (Rimu)	carcmaB0737
Carg18278	CmoCh04G023880	Cucurbita moschata (Rifu)	carcmoB0716
Carg18278	CmoCh15G007770	Cucurbita moschata (Rifu)	carcmoB0714
Carg18278	Lsi09G009130	Bottle gourd (USVL1VR-Ls)	carlsiB480
Carg18278	Cp4.1LG13g05380	Cucurbita pepo (Zucchini)	carcpeB0746
Carg18278	Cp4.1LG01g19840	Cucurbita pepo (Zucchini)	carcpeB0747
Carg18278	CsGy5G015060	Cucumber (Gy14) v2	carcgybB0533
Carg18278	MELO3C025122.2	Melon (DHL92) v3.6.1	carmedB0536
Carg18278	CsaV3_5G024270	Cucumber (Chinese Long) v3	carcucB0564
Carg18278	Cla97C01G008970	Watermelon (97103) v2	carwmbB0551
Carg18278	Bhi12G001053	Wax gourd	carwgoB0637

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg18278	Carg01454	Silver-seed gourd	carcarB500

The following block(s) are covering this gene:

None