CsaV3_5G024270 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_5G024270
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Voltage-dependent L-type calcium channel subunit
Location	chr5 : 19045795 .. 19050775 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACAACAAGAGTGATGTAGGATTTTGACGGAAAATCAAAATATATCACAAACATTTCTGGAAGTACTATACATTATATTAATCAATAGTGTGGAATTATCTCAAATCTTAAGGCCATGTGTTAAAATATCACTTGATCATAAATGCACATGTGCTACGTGGTGTTAAGTCTATTTGCATCTCCGTCAATCTAACGATACGCTTCTATCCAGAGAAAAGGCGACACCCAAATTATTAACTCACTACACATTTTCACTATTTATTGATTCTTAAGCGTCGCCGGAGCCTCTCAGAAATGGCGGAAGCGCACGACTCCGATGATCGGAATACCACCGTGCCGGTTGAGGAAGAAGATGCATCCAGTCATCAATCCAAAGGAGTGTGTACGGAGGATCAGACCGTTTATGAACCTCTCCGCCGTCTGATCGCTGAGATTTTCTTTCCCGATGAAATTAAGGGTTCTTTGTTTCATCGCGTCAAGGTCTCTGTCACTGATAATGGCCCTGCCGTTGCACAAGCTTGCAGAAACTTTGGTCGCGACGTTCTTTCTTGGACTCGTAGGGGCAGTCCTCTGCGAGCGCTCCTTGTTATCTCTGTGAGTATTGCCGATAATTCTAAAGTTGTGGATGTATGAACTTTTTTATTGTGTTTAAAGTGCATTTCTCTCAGTAATTAATGGATTGTGTGCTAATGTTCGAGATTATGATTTTATTGCTTTTTGGTTTTTCTTTTAAGGTTTCGCTTGATTTGGACGGGATTTGTTGTTAATAAGAATATGTTTTACTTGGTAATGAATACTGTCAAGCAATTTCCAGCTCATGGCCAAAATTGCAGAGAGTGCTTGAGTGGCCGTGTTTTTGACTTTTGGAGAAAAGATTTTGTTGAAGTGCTTTTGTTCGATTCCTTTGCGTACTACTTTTTATACACTCTTTGTAGTTGAACCAAAAAAGTCCTCTGGCTTCGTTCTTACACAGATCCAATTAATGCTCCCCATCTTTTGCTGTTTGGCTTCTAGTACCCGTTATCAAGTGTTGTTCCTGTGGAGGGAGGTGATCCCTTGTTCCTTGGCCCTTGGCCATCCTTTGCATGGTATAAGATTGGAATTGTACTTATGTGCTTCGTAAACTTCCAATTCTCATACGTTGCCATCCTTTTTGGTTGAAGATAATTATTTTCATGGTTGCAGCTATTGGAGATAGCTCATATGTTAATACCTGAGCAATCCTGAGAATGCGTACCCCATTTTTTCAATCTATTCTACAGCAACGGTAGAATTTCATTTCATTTTATTTGTCTTTTTTTTTGGGGGGGGGGGGGGGGGGGGGATTTTTTAAGCATTTTCACCTAGATTGTGAACCTTATGTCGGTATGACGTTTGGAATGAGATTGGCTCTTTTTCTTTTTTTGTTGAGAAATAGAGAATTCCTTGACAACTTCAAATGCTAACTTTATTATTCCTAAATACGTGGCAAATGTTCAGTCTAGAGCAAGTTGACACATTTTCCCAATATTCTTTGTTTTGGAGGAATTTACACGCTCTAACTTCTCTCCCTCATGCATTTGGCAAATCAAGTTTGTCATCGAGTTTTGAGATCATGTAAATCATACTTGGAGGATTTTGACTTTATGAATTGAATGAAGGTTCTAACTTCTCTTTTGTTGTTTTGTCTTCAATAGACAACAGATTCTCTTTGATGTCCATTTTCTTGAGTTTCATTGTTCTGATTTTGTTATTTTTTAAGGACTATTAACTGTGTGTAAGCTGGAGTGGTTTAGGGTTTCTTTTTAGTTTGTTTTGGGGTCTTGTTCCTTTGAAGTACACAGCTCTTGGAAGTTTGACTTTTGTAGTAAAGTTTGGTTAATCGATGGTAACATCCATGGAAAAGTAAACTTTCTTCGTCATGAGAGAGTAATATATCTTTTGGTAACATCTCTTTTGGTTAGAGACATAGCCTAGAAAGATATATTTATTAGCTTCAGGTTCAATTTTACTTCCTTTTAGGAGAGTGATTATGGGTAAAGGCAATTTAACAAAAACATTTAAGAACAAATATTCATAGTGGCATGTAAAGATTTTCAAACTCTATTTATTTCTCACAATCAAGGATTTTCTTTATGATATGATCCTTGTAGTGCATTTTTACAGGAGTTATAATTGAAGCCTATTGATATGTTTTTAGGTTGGCTTTAATCCTATGATAATTCTTTTATTTTTGGGCAGTTTGGATACAGAAGCGTTATAGGATCTTCATTGGGTACTTTTATGGTTGGAGAAGATGTGTGAGAGATTTTAAATTTCTGTATTCCATATGGAGATCTCTCAAGTTCTTTTGTAATTTTGACTCCCTCTTTTATTGGTGCCAATTGTAATAGTCCGTGTTTTTTTAACATTGTTATGTGTCGTTGACATCTCACCTCCCTCTCCTAGTTTTTCTGTTAATGAAAACTTTTCAATCTAAGAGAGGATTAAATTAGGAGAAATTGATAGGAATTTGATAGACCACCTATTGTCCTGCAGTACAGTAGGAGAGGAAAGAAAGGTTTGGAACGTGTAAAAGGGGATCATGTGGGAATCCAAATTAATTAGAGTTTGTTACTAATTCTGGAAGTATAAATAGTGTCTCTTTTAGGGGAGGGAGAGTTAGTTAGTTGTATTCTGAATTTCTGTTTCATCCTTGAGAGATAGGATAGCAGAGAGGGAAGAGTGTGCCCTAGTTACCGAATTGAGACTCTCTCAATTCATTCTTCTATATTTCACCATATTGTACTGTTTGATTTCATCCCATCAATAACATCAGAATAATTTTCATTCTTGATATTCAAATTTGGGCTCCACAAGAATTGTTACGATGAATTAGAAAGGATTCTGGCTTTTGACACTTGATTCAAGGAGGATGTAACCATTGAACTGGTATATAACACTAGTCATGCATGGGTATCGGATAGTTTGATACTGATGAATGATGTGTATTGTGCCTTGGTTCCTCTTGACTGCTTTTATCTATTTTGGATCTGTTGCAAAATTTTCACTGTAGTTGTCCTCTCTATTTTCCACACACAGAGACAAACTGAAGTGCTTTTTTATGTTCTCACCAGCACCCCTTTAAGTTGTTACTTACATCTGAAACTGCTGCAGGTTGGGACAATTGTTCTTCTTGCAATGACGGGATCGCTCATCTTTCTGTTCTTCTTTCTGGCAGCCACTCTCAATGCCATTATTATCTCTCTTCTTGTATCCTTGGCAGCAGTTGGAGGCTTCTTGGCTCTTTTCTTTGCTTGCGTAACAGCCATATATGTGGGGGCATTAGGAGTTGCTTTGTTTGTTATATCTACTGCAACAATCTCAGCAATTGTAGCAGTGGTGATCGCCGCAGGTACCAATAATATACACTTCTCTAAATCACGTTTCTTGAAAACCTCTTAACCAACTGGTATGAAATTCTACGTATTGGTTTGAAATGGTTGGGTCTCAGTCTCATAAGGGAAACGAAAAACATCAACATTATCCTCCCATCTTTTCTGTAGGAATAAACAAAATATAATCGAGATGTTAAAAGAAAATAACAGTGGAAACACAAAAATCACATGGAAAATTCTTAATGCCCCCCATAAAGAAATCTACTACGGGTAGAATTATTACATCCACAGACAATTCTCTTCTCGATTCTGATTGCTAGAATTCTCTCTCAAAACTTTGATGTACCACCACTCACGCACCTTTTCCTGCTTTTTGACTAGAGTAGTACACTCAGTAACCAAGCTTAAAATGCTGCTCCTTTATAGTGTTTGGTACCCATTTGATGTAAGAAGAATAGGGTTTACTTGGGTACTTGGGTAATATTCTAGGTTAATTCTCTTTTTACTCCCACCTGTAATAAAATTCTATTGGTAAGACTCTTCCCCTCTTGTATGAAACAATTGTTATCATTCTAATAAAAGATTCATAATTTGATTCTTGGAGGATTACTCCTTAAGACTACTTAGGCTCATCAGTTCATTTTTATGAGTCTTTGCTACTCTTCTAATATTTTGCCGAAAGCCTTATAATCGTATAGTTAGCAGTTTGATAACTTTTTGTTTCTACTCTTCCTTTTCTCTACCCACAATTTAAATTGTATCTTCAATCATTAGGATGAATTTAACTTGTACACACCAATGAAAATGTTGTAAGCTAAGAGTTTCTTAACGAATCGGAGGATCCAGAGAAGTTCTGCCTTCTATTAAACAAATGCACATACTAGTCAATGATTTTCCACTGATTTTGTTTGTCTTCATGAGAGTAGACCTTGGGTCAATTGGTCACTTTTGGGCGGTTGCCATATTTTTCTGTGCTCTAACATCTTACCTTCTCAAAATTCAGGATGGATTGGGTTCTTCTGTATGGTTTGGCTAGCAATACGCAAAAGTTTTGGTCTTGCGAAGCGGTCAGTGAGTGCGAGCAATTCAGCAATTTCAGCATTTTCTTATGCTAGGCGTGCCCACAAAGACTAGGTAAATGTTTCAGATCCTTTAAATGAATGCTATGAAGTGGGGTATGTTATTCTCAAAATTCTGGTGCATATATTATAATGAGTTTTCGAAGGCCTTTTTAGTGTATCCATAATGTGTAATCTTACAATGTAAATAATCTTTTAAAAGTATATTATCTACTTTATGGGCTTCTTTATTGGCGATGAAAGTACTAAGATTTGAGATAGCTCTTCCATGAACTATAATCATAATTTTTAAGTATATTTCTTTTTCTTTCACTATGAACTGTAATTGTCAAAATTTTATAGGATTAAAATTTAAGGAGTCCAATCAGGGTTTGTTTGACTCAATGACTTCCTAAGTTTGAGGTTGGAACTTATGTATTCGATTGTTCAAGGGAATGGATTATATAAATTCAAGTGTGTAAATGTGATTATATAAATTCAAAATGTGTGTAAATGTGATTTTATAAATTTAGATGTGTGTAAACGTGAAATTACTAATGCCAACC

mRNA sequence

ATGGCGGAAGCGCACGACTCCGATGATCGGAATACCACCGTGCCGGTTGAGGAAGAAGATGCATCCAGTCATCAATCCAAAGGAGTGTGTACGGAGGATCAGACCGTTTATGAACCTCTCCGCCGTCTGATCGCTGAGATTTTCTTTCCCGATGAAATTAAGGGTTCTTTGTTTCATCGCGTCAAGGTCTCTGTCACTGATAATGGCCCTGCCGTTGCACAAGCTTGCAGAAACTTTGGTCGCGACGTTCTTTCTTGGACTCGTAGGGGCAGTCCTCTGCGAGCGCTCCTTGTTATCTCTGTTGGGACAATTGTTCTTCTTGCAATGACGGGATCGCTCATCTTTCTGTTCTTCTTTCTGGCAGCCACTCTCAATGCCATTATTATCTCTCTTCTTGTATCCTTGGCAGCAGTTGGAGGCTTCTTGGCTCTTTTCTTTGCTTGCGTAACAGCCATATATGTGGGGGCATTAGGAGTTGCTTTGTTTGTTATATCTACTGCAACAATCTCAGCAATTGTAGCAGTGGTGATCGCCGCAGGATGGATTGGGTTCTTCTGTATGGTTTGGCTAGCAATACGCAAAAGTTTTGGTCTTGCGAAGCGGTCAGTGAGTGCGAGCAATTCAGCAATTTCAGCATTTTCTTATGCTAGGCGTGCCCACAAAGACTAG

Coding sequence (CDS)

ATGGCGGAAGCGCACGACTCCGATGATCGGAATACCACCGTGCCGGTTGAGGAAGAAGATGCATCCAGTCATCAATCCAAAGGAGTGTGTACGGAGGATCAGACCGTTTATGAACCTCTCCGCCGTCTGATCGCTGAGATTTTCTTTCCCGATGAAATTAAGGGTTCTTTGTTTCATCGCGTCAAGGTCTCTGTCACTGATAATGGCCCTGCCGTTGCACAAGCTTGCAGAAACTTTGGTCGCGACGTTCTTTCTTGGACTCGTAGGGGCAGTCCTCTGCGAGCGCTCCTTGTTATCTCTGTTGGGACAATTGTTCTTCTTGCAATGACGGGATCGCTCATCTTTCTGTTCTTCTTTCTGGCAGCCACTCTCAATGCCATTATTATCTCTCTTCTTGTATCCTTGGCAGCAGTTGGAGGCTTCTTGGCTCTTTTCTTTGCTTGCGTAACAGCCATATATGTGGGGGCATTAGGAGTTGCTTTGTTTGTTATATCTACTGCAACAATCTCAGCAATTGTAGCAGTGGTGATCGCCGCAGGATGGATTGGGTTCTTCTGTATGGTTTGGCTAGCAATACGCAAAAGTTTTGGTCTTGCGAAGCGGTCAGTGAGTGCGAGCAATTCAGCAATTTCAGCATTTTCTTATGCTAGGCGTGCCCACAAAGACTAG

Protein sequence

MAEAHDSDDRNTTVPVEEEDASSHQSKGVCTEDQTVYEPLRRLIAEIFFPDEIKGSLFHRVKVSVTDNGPAVAQACRNFGRDVLSWTRRGSPLRALLVISVGTIVLLAMTGSLIFLFFFLAATLNAIIISLLVSLAAVGGFLALFFACVTAIYVGALGVALFVISTATISAIVAVVIAAGWIGFFCMVWLAIRKSFGLAKRSVSASNSAISAFSYARRAHKD

Homology

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BLAST of CsaV3_5G024270 vs. NCBI nr
Match: XP_004140295.1 (PREDICTED: uncharacterized protein LOC101212066 [Cucumis sativus] >KGN51068.1 hypothetical protein Csa_5G427940 [Cucumis sativus])

HSP 1 Score: 379.8 bits (974), Expect = 6.4e-102
Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 0


Query: 1   MAEAHDSDDRNTTVPVEEEDASSHQSKGVCTEDQTVYEPLRRLIAEIFFPDEIKGSLFHR 60
           MAEAHDSDDRNTTVPVEEEDASSHQSKGVCTEDQTVYEPLRRLIAEIFFPDEIKGSLFHR
Sbjct: 1   MAEAHDSDDRNTTVPVEEEDASSHQSKGVCTEDQTVYEPLRRLIAEIFFPDEIKGSLFHR 60

Query: 61  VKVSVTDNGPAVAQACRNFGRDVLSWTRRGSPLRALLVISVGTIVLLAMTGSLIFLFFFL 120
           VKVSVTDNGPAVAQACRNFGRDVLSWTRRGSPLRALLVISVGTIVLLAMTGSLIFLFFFL
Sbjct: 61  VKVSVTDNGPAVAQACRNFGRDVLSWTRRGSPLRALLVISVGTIVLLAMTGSLIFLFFFL 120

Query: 121 AATLNAIIXXXXXXXXXXXXXXALFFACVTAIYVGALGVALFVISTATISAIVAVVIAAG 180
           AATLNAIIXXXXXXXXXXXXXXALFFACVTAIYVGALGVALFVISTATISAIVAVVIAAG
Sbjct: 121 AATLNAIIXXXXXXXXXXXXXXALFFACVTAIYVGALGVALFVISTATISAIVAVVIAAG 180

Query: 181 WIGFFCMVWLAIRKSFGLAKRSVSASNSAISAFSYARRAHKD 223
           WIGFFCMVWLAIRKSFGLAKRSVSASNSAISAFSYARRAHKD
Sbjct: 181 WIGFFCMVWLAIRKSFGLAKRSVSASNSAISAFSYARRAHKD 222

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BLAST of CsaV3_5G024270 vs. NCBI nr
Match: XP_008463179.1 (PREDICTED: uncharacterized protein LOC103501388 [Cucumis melo])

HSP 1 Score: 353.2 bits (905), Expect = 6.4e-94
Identity = 197/222 (88.74%), Postives = 199/222 (89.64%), Query Frame = 0


Query: 1   MAEAHDSDDRNTTVPVEEEDASSHQSKGVCTEDQTVYEPLRRLIAEIFFPDEIKGSLFHR 60
           MAEAHDSD RNTTVPVEEEDASSHQSKG+  +DQTVYEPLRRLIAEIFFPDEIKGSLFHR
Sbjct: 1   MAEAHDSDARNTTVPVEEEDASSHQSKGLSIDDQTVYEPLRRLIAEIFFPDEIKGSLFHR 60

Query: 61  VKVSVTDNGPAVAQACRNFGRDVLSWTRRGSPLRALLVISVGTIVLLAMTGSLIFLFFFL 120
           VKVSV DNGPAV QACRNFG DVLSWTRRGSPLRALLVISVGTIVLLAMTGSLIFL FFL
Sbjct: 61  VKVSVADNGPAVGQACRNFGHDVLSWTRRGSPLRALLVISVGTIVLLAMTGSLIFLLFFL 120

Query: 121 AATLNAIIXXXXXXXXXXXXXXALFFACVTAIYVGALGVALFVISTATISAIVAVVIAAG 180
           AATLNAII              ALFFACVTAIYVGALGVALFVISTATISAIVAVVIAAG
Sbjct: 121 AATLNAIIISLLVSLAAVGGFLALFFACVTAIYVGALGVALFVISTATISAIVAVVIAAG 180

Query: 181 WIGFFCMVWLAIRKSFGLAKRSVSASNSAISAFSYARRAHKD 223
           WIGFF MVWLAI KSFGLAKRSVSASNSAISAFSYARRAHKD
Sbjct: 181 WIGFFFMVWLAICKSFGLAKRSVSASNSAISAFSYARRAHKD 222

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BLAST of CsaV3_5G024270 vs. NCBI nr
Match: XP_023514904.1 (uncharacterized protein LOC111779077 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 306.6 bits (784), Expect = 6.9e-80
Identity = 168/223 (75.34%), Postives = 189/223 (84.75%), Query Frame = 0


Query: 1   MAEAHDSDDRNTTVPVEEEDASSHQSKGVCTEDQTVYEPLRRLIAEIFFPDEIKG-SLFH 60
           MAE +DSDDRN TVPVEE+D +SH+SKGV   DQTVYE LRRLIAE+F PD+ KG SLF 
Sbjct: 1   MAEKYDSDDRNGTVPVEEQDRTSHKSKGVYNMDQTVYETLRRLIAEVFSPDKAKGSSLFQ 60

Query: 61  RVKVSVTDNGPAVAQACRNFGRDVLSWTRRGSPLRALLVISVGTIVLLAMTGSLIFLFFF 120
           RVKVS+T+NGPAV +ACRN GRDVL WTRRGSPLRALLVISVGTI LLA+TG LIFL FF
Sbjct: 61  RVKVSITENGPAVEKACRNIGRDVLCWTRRGSPLRALLVISVGTIALLALTGLLIFLLFF 120

Query: 121 LAATLNAIIXXXXXXXXXXXXXXALFFACVTAIYVGALGVALFVISTATISAIVAVVIAA 180
           LAAT NA++              ALFFAC+TA+Y+GAL VALFVISTATISAIVAVVIAA
Sbjct: 121 LAATFNAVVISLLVSLAAVGGFLALFFACITAVYIGALTVALFVISTATISAIVAVVIAA 180

Query: 181 GWIGFFCMVWLAIRKSFGLAKRSVSASNSAISAFSYARRAHKD 223
           GWIGFFC+VWLAIRKSFG+AK+S+SA +SAISAFS+ARRAHKD
Sbjct: 181 GWIGFFCVVWLAIRKSFGIAKQSMSAGSSAISAFSHARRAHKD 223

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BLAST of CsaV3_5G024270 vs. NCBI nr
Match: XP_022922733.1 (uncharacterized protein LOC111430635 [Cucurbita moschata])

HSP 1 Score: 302.8 bits (774), Expect = 9.9e-79
Identity = 165/223 (73.99%), Postives = 189/223 (84.75%), Query Frame = 0


Query: 1   MAEAHDSDDRNTTVPVEEEDASSHQSKGVCTEDQTVYEPLRRLIAEIFFPDEIKG-SLFH 60
           MAE +DSDDRN TVPV+E+D +SH+SKGV   D+TVYE LRRLIAE+F PD+ KG SLF 
Sbjct: 1   MAEKYDSDDRNGTVPVDEQDRTSHKSKGVYNMDRTVYETLRRLIAEVFSPDKAKGSSLFQ 60

Query: 61  RVKVSVTDNGPAVAQACRNFGRDVLSWTRRGSPLRALLVISVGTIVLLAMTGSLIFLFFF 120
           RVKVS+T+NGPAV +ACRN GRDVL WTRRGSPLRALLVISVGTI LLA+TG LIFL FF
Sbjct: 61  RVKVSITENGPAVEKACRNIGRDVLCWTRRGSPLRALLVISVGTIALLALTGLLIFLLFF 120

Query: 121 LAATLNAIIXXXXXXXXXXXXXXALFFACVTAIYVGALGVALFVISTATISAIVAVVIAA 180
           LAAT NA++              ALFFAC+TA+Y+GAL VALFVISTATISAIVAVVIAA
Sbjct: 121 LAATFNAVVISLLVSLAAVGGFLALFFACITAVYIGALTVALFVISTATISAIVAVVIAA 180

Query: 181 GWIGFFCMVWLAIRKSFGLAKRSVSASNSAISAFSYARRAHKD 223
           GWIGFFC+VWLA+RKSFG+AK+S+SA +SAISAFS+ARRAHKD
Sbjct: 181 GWIGFFCVVWLAMRKSFGIAKQSMSAGSSAISAFSHARRAHKD 223

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BLAST of CsaV3_5G024270 vs. NCBI nr
Match: XP_022990837.1 (uncharacterized protein LOC111487608 [Cucurbita maxima])

HSP 1 Score: 300.8 bits (769), Expect = 3.8e-78
Identity = 164/223 (73.54%), Postives = 189/223 (84.75%), Query Frame = 0


Query: 1   MAEAHDSDDRNTTVPVEEEDASSHQSKGVCTEDQTVYEPLRRLIAEIFFPDEIKG-SLFH 60
           MAE +DSDDRN TVPV+E++ +SH+SKG+ +EDQTVYE LRRLIAE+F PD+ KG SLF 
Sbjct: 1   MAEKYDSDDRNGTVPVDEQERTSHKSKGLHSEDQTVYETLRRLIAEVFSPDKAKGSSLFQ 60

Query: 61  RVKVSVTDNGPAVAQACRNFGRDVLSWTRRGSPLRALLVISVGTIVLLAMTGSLIFLFFF 120
           RVKVS+T+NGPAV +ACRN G DVL WTRRGSPLRALLVISVGTI LLA+TG LIFL FF
Sbjct: 61  RVKVSITENGPAVEKACRNIGCDVLCWTRRGSPLRALLVISVGTIALLALTGLLIFLLFF 120

Query: 121 LAATLNAIIXXXXXXXXXXXXXXALFFACVTAIYVGALGVALFVISTATISAIVAVVIAA 180
           LAAT NA++              ALFFAC+TA+Y+GAL VALFVISTATISAIVAVVIAA
Sbjct: 121 LAATFNAVVISLLVSLAAVGGFLALFFACITAVYIGALTVALFVISTATISAIVAVVIAA 180

Query: 181 GWIGFFCMVWLAIRKSFGLAKRSVSASNSAISAFSYARRAHKD 223
           GWIGFFC+VWLAIRKSFG+AK+S+SA +S ISAFS+ARRAHKD
Sbjct: 181 GWIGFFCVVWLAIRKSFGIAKQSMSAGSSVISAFSHARRAHKD 223

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BLAST of CsaV3_5G024270 vs. TAIR10
Match: AT5G16550.1 (unknown protein)

HSP 1 Score: 163.7 bits (413), Expect = 1.3e-40
Identity = 97/192 (50.52%), Postives = 124/192 (64.58%), Query Frame = 0


Query: 34  QTVYEPLRRLIAEIFFPDEIKG---SLFHRVKVSVTDNGPAVAQACRNFGRDVLSWTRRG 93
           +++Y  +   I  I FPD   G   S   RV+ SV +NGP + +A    GR++L WTRRG
Sbjct: 49  KSLYSLICLTIGSILFPDSKTGDASSFLERVRNSVAENGPKLREASERTGREILLWTRRG 108

Query: 94  SPLRALLVISVGTIVLLAMTGSLIFLFFFLAATLNAIIXXXXXXXXXXXXXXALFFACVT 153
           S LRALLVI++GTIVLL     ++F  FF+AAT NAII              ALFF C+T
Sbjct: 109 SSLRALLVITMGTIVLLTTMALVVFTLFFVAATANAIIISLLISLAVAGGFLALFFLCLT 168

Query: 154 AIYVGALGVALFVISTATISAIVAVVIAAGWIGFFCMVWLAIRKSFGLAKRSVSASNSAI 213
            +Y+GAL VA FVISTAT+SA+V+V+IA+GWIGFF  VWL  R S  LAK+SVS   SAI
Sbjct: 169 GVYIGALSVAAFVISTATVSAVVSVLIASGWIGFFYAVWLGTRGSLRLAKQSVSVVGSAI 228

Query: 214 SAFSYARRAHKD 223
           S  + +R  H+D
Sbjct: 229 SGNTISRHQHQD 240

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BLAST of CsaV3_5G024270 vs. TrEMBL
Match: tr|A0A0A0KNC3|A0A0A0KNC3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G427940 PE=4 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 4.2e-102
Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 0


Query: 1   MAEAHDSDDRNTTVPVEEEDASSHQSKGVCTEDQTVYEPLRRLIAEIFFPDEIKGSLFHR 60
           MAEAHDSDDRNTTVPVEEEDASSHQSKGVCTEDQTVYEPLRRLIAEIFFPDEIKGSLFHR
Sbjct: 1   MAEAHDSDDRNTTVPVEEEDASSHQSKGVCTEDQTVYEPLRRLIAEIFFPDEIKGSLFHR 60

Query: 61  VKVSVTDNGPAVAQACRNFGRDVLSWTRRGSPLRALLVISVGTIVLLAMTGSLIFLFFFL 120
           VKVSVTDNGPAVAQACRNFGRDVLSWTRRGSPLRALLVISVGTIVLLAMTGSLIFLFFFL
Sbjct: 61  VKVSVTDNGPAVAQACRNFGRDVLSWTRRGSPLRALLVISVGTIVLLAMTGSLIFLFFFL 120

Query: 121 AATLNAIIXXXXXXXXXXXXXXALFFACVTAIYVGALGVALFVISTATISAIVAVVIAAG 180
           AATLNAIIXXXXXXXXXXXXXXALFFACVTAIYVGALGVALFVISTATISAIVAVVIAAG
Sbjct: 121 AATLNAIIXXXXXXXXXXXXXXALFFACVTAIYVGALGVALFVISTATISAIVAVVIAAG 180

Query: 181 WIGFFCMVWLAIRKSFGLAKRSVSASNSAISAFSYARRAHKD 223
           WIGFFCMVWLAIRKSFGLAKRSVSASNSAISAFSYARRAHKD
Sbjct: 181 WIGFFCMVWLAIRKSFGLAKRSVSASNSAISAFSYARRAHKD 222

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BLAST of CsaV3_5G024270 vs. TrEMBL
Match: tr|A0A1S3CIL4|A0A1S3CIL4_CUCME (uncharacterized protein LOC103501388 OS=Cucumis melo OX=3656 GN=LOC103501388 PE=4 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 4.2e-94
Identity = 197/222 (88.74%), Postives = 199/222 (89.64%), Query Frame = 0


Query: 1   MAEAHDSDDRNTTVPVEEEDASSHQSKGVCTEDQTVYEPLRRLIAEIFFPDEIKGSLFHR 60
           MAEAHDSD RNTTVPVEEEDASSHQSKG+  +DQTVYEPLRRLIAEIFFPDEIKGSLFHR
Sbjct: 1   MAEAHDSDARNTTVPVEEEDASSHQSKGLSIDDQTVYEPLRRLIAEIFFPDEIKGSLFHR 60

Query: 61  VKVSVTDNGPAVAQACRNFGRDVLSWTRRGSPLRALLVISVGTIVLLAMTGSLIFLFFFL 120
           VKVSV DNGPAV QACRNFG DVLSWTRRGSPLRALLVISVGTIVLLAMTGSLIFL FFL
Sbjct: 61  VKVSVADNGPAVGQACRNFGHDVLSWTRRGSPLRALLVISVGTIVLLAMTGSLIFLLFFL 120

Query: 121 AATLNAIIXXXXXXXXXXXXXXALFFACVTAIYVGALGVALFVISTATISAIVAVVIAAG 180
           AATLNAII              ALFFACVTAIYVGALGVALFVISTATISAIVAVVIAAG
Sbjct: 121 AATLNAIIISLLVSLAAVGGFLALFFACVTAIYVGALGVALFVISTATISAIVAVVIAAG 180

Query: 181 WIGFFCMVWLAIRKSFGLAKRSVSASNSAISAFSYARRAHKD 223
           WIGFF MVWLAI KSFGLAKRSVSASNSAISAFSYARRAHKD
Sbjct: 181 WIGFFFMVWLAICKSFGLAKRSVSASNSAISAFSYARRAHKD 222

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BLAST of CsaV3_5G024270 vs. TrEMBL
Match: tr|A0A067KI39|A0A067KI39_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_10524 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.0e-47
Identity = 114/201 (56.72%), Postives = 140/201 (69.65%), Query Frame = 0


Query: 25  QSKGVCTEDQTVYEPLRRLIAEIFFPDE----IKGSLFHRVKVSVTDNGPAVAQACRNFG 84
           + KGV  +D+T+Y  L  L+A IF P+        S   R+K+SV++NGP +  A +N G
Sbjct: 19  EKKGVHRKDETLYSVLHSLLAMIFVPESGSSVAAESFLQRIKISVSENGPLLKDATKNTG 78

Query: 85  RDVLSWTRRGSPLRALLVISVGTIVLLAMTGSLIFLFFFLAATLNAIIXXXXXXXXXXXX 144
           R VL WTRRGSPLRALLVISVGTI LL +TG L+F+ FFLAAT+NAI+            
Sbjct: 79  RKVLLWTRRGSPLRALLVISVGTITLLTLTGLLVFMLFFLAATVNAIVVSLLISLAAAGG 138

Query: 145 XXALFFACVTAIYVGALGVALFVISTATISAIVAVVIAAGWIGFFCMVWLAIRKSFGLAK 204
             ALFFACVTA+Y+GAL VALFVIST  ISAIVAV+IA GWIGFF  VWL  +KS G+AK
Sbjct: 139 FLALFFACVTAVYIGALSVALFVISTTAISAIVAVLIATGWIGFFWTVWLVTKKSVGVAK 198

Query: 205 RSVSASNSAISAFSYARRAHK 222
            S+S + SAISA+S AR   +
Sbjct: 199 HSLSMTGSAISAYSSARHLRR 219

[Close]

BLAST of CsaV3_5G024270 vs. TrEMBL
Match: tr|W9S3F9|W9S3F9_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_007805 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.3e-47
Identity = 114/210 (54.29%), Postives = 146/210 (69.52%), Query Frame = 0


Query: 16  VEEEDASSHQSKGVCTEDQTVYEPLRRLIAEIFFPD---EIKGS-LFHRVKVSVTDNGPA 75
           +EE    +  ++    +D+T+   + RLI+EI FPD   +  G+ L  R+K SV +NGP 
Sbjct: 1   MEENSNDTGANRAHRRDDETLNGVVHRLISEILFPDASGDTAGAPLLQRIKTSVAENGPL 60

Query: 76  VAQACRNFGRDVLSWTRRGSPLRALLVISVGTIVLLAMTGSLIFLFFFLAATLNAIIXXX 135
           + +A RN   +VL WTRRGSPLRALLVISVGTI LLA+TG L+F+ FFL AT NAI+   
Sbjct: 61  LPEASRNTASNVLLWTRRGSPLRALLVISVGTITLLALTGLLVFMVFFLVATFNAIVVSL 120

Query: 136 XXXXXXXXXXXALFFACVTAIYVGALGVALFVISTATISAIVAVVIAAGWIGFFCMVWLA 195
                      ALFFACVTAIY+GAL +A FVIST  I+ I+AV+IAAGWIGFFC VWL 
Sbjct: 121 LISLAAAGGFLALFFACVTAIYIGALSIAAFVISTTAITTIIAVLIAAGWIGFFCTVWLV 180

Query: 196 IRKSFGLAKRSVSASNSAISAFSYARRAHK 222
           I+KS GLAK S+S ++SA+SA+S AR  H+
Sbjct: 181 IKKSLGLAKHSLSMTSSALSAYSTARHTHQ 210

[Close]

BLAST of CsaV3_5G024270 vs. TrEMBL
Match: tr|M5WTH6|M5WTH6_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa009705mg PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.3e-47
Identity = 124/225 (55.11%), Postives = 151/225 (67.11%), Query Frame = 0


Query: 1   MAEAHDSDDRNTTVPVEEEDASSHQSKGVCTEDQTVYEPLRRLIAEIFFPDEIKGS---- 60
           MAE + +   N  V V+  D     +K    E +T++    RLI  IFFP          
Sbjct: 57  MAEPYGT---NGAVDVDVTDDGEINTKATHRE-ETLFGVFHRLIDAIFFPGSTSAGTAAP 116

Query: 61  LFHRVKVSVTDNGPAVAQACRNFGRDVLSWTRRGSPLRALLVISVGTIVLLAMTGSLIFL 120
           LF R+K S+ +N P + +A RN GR+VL WTRRGSPLRALLVISVGTI L+++TG L+F+
Sbjct: 117 LFRRIKNSLAENCPLLREASRNSGRNVLLWTRRGSPLRALLVISVGTITLISLTGLLVFM 176

Query: 121 FFFLAATLNAIIXXXXXXXXXXXXXXALFFACVTAIYVGALGVALFVISTATISAIVAVV 180
            FFLAATLNA+I   XX         ALFFACVTAIY+GAL VA+FVIS  TISAI AV+
Sbjct: 177 LFFLAATLNAVIISLXXSLAAAGGFLALFFACVTAIYIGALSVAVFVISATTISAIAAVL 236

Query: 181 IAAGWIGFFCMVWLAIRKSFGLAKRSVSASNSAISAFSYARRAHK 222
           I  GWIGFF +VWLA +KS GLAK+S S + SAISA+SY R AHK
Sbjct: 237 ITTGWIGFFWIVWLAAKKSLGLAKQSFSVTGSAISAYSYGRHAHK 277

The following BLAST results are available for this feature:

BLAST of CsaV3_5G024270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140295.1	6.4e-102	100.00	PREDICTED: uncharacterized protein LOC101212066 [Cucumis sativus] >KGN51068.1 hy...	[more]
XP_008463179.1	6.4e-94	88.74	PREDICTED: uncharacterized protein LOC103501388 [Cucumis melo]	[more]
XP_023514904.1	6.9e-80	75.34	uncharacterized protein LOC111779077 [Cucurbita pepo subsp. pepo]	[more]
XP_022922733.1	9.9e-79	73.99	uncharacterized protein LOC111430635 [Cucurbita moschata]	[more]
XP_022990837.1	3.8e-78	73.54	uncharacterized protein LOC111487608 [Cucurbita maxima]	[more]

BLAST of CsaV3_5G024270 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G16550.1	1.3e-40	50.52	unknown protein	[more]

BLAST of CsaV3_5G024270 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G024270 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KNC3\|A0A0A0KNC3_CUCSA	4.2e-102	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G427940 PE=4 SV=1	[more]
tr\|A0A1S3CIL4\|A0A1S3CIL4_CUCME	4.2e-94	88.74	uncharacterized protein LOC103501388 OS=Cucumis melo OX=3656 GN=LOC103501388 PE=...	[more]
tr\|A0A067KI39\|A0A067KI39_JATCU	1.0e-47	56.72	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_10524 PE=4 SV=1	[more]
tr\|W9S3F9\|W9S3F9_9ROSA	2.3e-47	54.29	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_007805 PE=4 SV=1	[more]
tr\|M5WTH6\|M5WTH6_PRUPE	2.3e-47	55.11	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa009705mg PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G024270.1	CsaV3_5G024270.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	PANTHER	PTHR35508	FAMILY NOT NAMED	coord: 8..221

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_5G024270	CSPI05G15240	Wild cucumber (PI 183967)	cpicucB284
CsaV3_5G024270	Cucsa.001330	Cucumber (Gy14) v1	cgycucB412
CsaV3_5G024270	CmaCh15G007520	Cucurbita maxima (Rimu)	cmacucB0343
CsaV3_5G024270	CmaCh04G022840	Cucurbita maxima (Rimu)	cmacucB0887
CsaV3_5G024270	CmoCh15G007770	Cucurbita moschata (Rifu)	cmocucB0337
CsaV3_5G024270	CmoCh04G023880	Cucurbita moschata (Rifu)	cmocucB0876
CsaV3_5G024270	Cp4.1LG13g05380	Cucurbita pepo (Zucchini)	cpecucB0225
CsaV3_5G024270	Cp4.1LG01g19840	Cucurbita pepo (Zucchini)	cpecucB0545
CsaV3_5G024270	CsGy5G015060	Cucumber (Gy14) v2	cgybcucB232
CsaV3_5G024270	Carg18278	Silver-seed gourd	carcucB0564
CsaV3_5G024270	Carg01454	Silver-seed gourd	carcucB0869
CsaV3_5G024270	Cla009149	Watermelon (97103) v1	cucwmB443
CsaV3_5G024270	MELO3C025122	Melon (DHL92) v3.5.1	cucmeB351
CsaV3_5G024270	ClCG01G008740	Watermelon (Charleston Gray)	cucwcgB396
CsaV3_5G024270	Lsi09G009130	Bottle gourd (USVL1VR-Ls)	cuclsiB353
CsaV3_5G024270	MELO3C025122.2	Melon (DHL92) v3.6.1	cucmedB343
CsaV3_5G024270	Cla97C01G008970	Watermelon (97103) v2	cucwmbB361
CsaV3_5G024270	Bhi12G001053	Wax gourd	cucwgoB463

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None