Cp4.1LG08g00120 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG08g00120
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Location	Cp4.1LG08 : 4585169 .. 4585840 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAAAGAGATGAAGCGCAAGAACAAAAGCAAGAACACGTCCAAAATCCGAAGGATTTGAAAGAAGAAAAGAAGGGAGCAAGCCCATACTACCCAAAAACCACTCGGCGCTCTGTTTGCGCATGCATATCCATCTTCCTCCTCATAATTGGCGTGGTGGCTCTCACTCTCTGGCTTGTGTACCGCCCCACTCACCCTCAATTCAAGGTTGTTGGAGCCGCAATATACGAGCTCAACATCTCATCTCTGCCACTTCTGTCCACAAGGATGCAATTTACAATCCTTACAAGGAACCCCAACAGGCGAGTTGGGATCTATTATGACAGACTCACTGCGTTCGTGTCGTATAGGAACCAGCAGATAACGCCGCAGGTGATGCTGCCTCCCCTGTTTCATGAAAAGCAGAGCACAGTGGCGATGTCGCCTGTACTAGGAGGTGGGGCGGTGGCAGTGCCGTTGGAGGTGGGAAATGGGTTGGTCACGGATGAAGCGATTGGAGTTGTGGGGTTGAGAGTTGTGTTGTTGGGGAAACTAAGATGGAAAGCTGGGCCAGTCAAGACTGGGCGTTATGCGGTAATTGTGAAATGTGACGTGTTGGTGGGTCTCAAAAGTGGGGTGGTGGGACAAGTTCCGTTGCTTGGTTTCCCCGCTTGCCAGGTTGATATTTAG

mRNA sequence

ATGGCAGAAAGAGATGAAGCGCAAGAACAAAAGCAAGAACACGTCCAAAATCCGAAGGATTTGAAAGAAGAAAAGAAGGGAGCAAGCCCATACTACCCAAAAACCACTCGGCGCTCTGTTTGCGCATGCATATCCATCTTCCTCCTCATAATTGGCGTGGTGGCTCTCACTCTCTGGCTTGTGTACCGCCCCACTCACCCTCAATTCAAGGTTGTTGGAGCCGCAATATACGAGCTCAACATCTCATCTCTGCCACTTCTGTCCACAAGGATGCAATTTACAATCCTTACAAGGAACCCCAACAGGCGAGTTGGGATCTATTATGACAGACTCACTGCGTTCGTGTCGTATAGGAACCAGCAGATAACGCCGCAGGTGATGCTGCCTCCCCTGTTTCATGAAAAGCAGAGCACAGTGGCGATGTCGCCTGTACTAGGAGGTGGGGCGGTGGCAGTGCCGTTGGAGGTGGGAAATGGGTTGGTCACGGATGAAGCGATTGGAGTTGTGGGGTTGAGAGTTGTGTTGTTGGGGAAACTAAGATGGAAAGCTGGGCCAGTCAAGACTGGGCGTTATGCGGTAATTGTGAAATGTGACGTGTTGGTGGGTCTCAAAAGTGGGGTGGTGGGACAAGTTCCGTTGCTTGGTTTCCCCGCTTGCCAGGTTGATATTTAG

Coding sequence (CDS)

ATGGCAGAAAGAGATGAAGCGCAAGAACAAAAGCAAGAACACGTCCAAAATCCGAAGGATTTGAAAGAAGAAAAGAAGGGAGCAAGCCCATACTACCCAAAAACCACTCGGCGCTCTGTTTGCGCATGCATATCCATCTTCCTCCTCATAATTGGCGTGGTGGCTCTCACTCTCTGGCTTGTGTACCGCCCCACTCACCCTCAATTCAAGGTTGTTGGAGCCGCAATATACGAGCTCAACATCTCATCTCTGCCACTTCTGTCCACAAGGATGCAATTTACAATCCTTACAAGGAACCCCAACAGGCGAGTTGGGATCTATTATGACAGACTCACTGCGTTCGTGTCGTATAGGAACCAGCAGATAACGCCGCAGGTGATGCTGCCTCCCCTGTTTCATGAAAAGCAGAGCACAGTGGCGATGTCGCCTGTACTAGGAGGTGGGGCGGTGGCAGTGCCGTTGGAGGTGGGAAATGGGTTGGTCACGGATGAAGCGATTGGAGTTGTGGGGTTGAGAGTTGTGTTGTTGGGGAAACTAAGATGGAAAGCTGGGCCAGTCAAGACTGGGCGTTATGCGGTAATTGTGAAATGTGACGTGTTGGTGGGTCTCAAAAGTGGGGTGGTGGGACAAGTTCCGTTGCTTGGTTTCCCCGCTTGCCAGGTTGATATTTAG

Protein sequence

MAERDEAQEQKQEHVQNPKDLKEEKKGASPYYPKTTRRSVCACISIFLLIIGVVALTLWLVYRPTHPQFKVVGAAIYELNISSLPLLSTRMQFTILTRNPNRRVGIYYDRLTAFVSYRNQQITPQVMLPPLFHEKQSTVAMSPVLGGGAVAVPLEVGNGLVTDEAIGVVGLRVVLLGKLRWKAGPVKTGRYAVIVKCDVLVGLKSGVVGQVPLLGFPACQVDI

Homology

[Close]

BLAST of Cp4.1LG08g00120 vs. Swiss-Prot
Match: NHL12_ARATH (NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana GN=NHL12 PE=2 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.2e-24
Identity = 59/174 (33.91%), Postives = 95/174 (54.60%), Query Frame = 1


Query: 36  TRRSVCACISIFLLIIGVVALTLWLVYRPTHPQFKVVGAAIYELNISSLPLLSTRMQFTI 95
           T   +C  I  F++I+ +    +W++ +PT P+F +  A +Y  N+S   LL++  Q TI
Sbjct: 17  TASRICGVIIGFIIIVLITIFLVWIILQPTKPRFILQDATVYAFNLSQPNLLTSNFQITI 76

Query: 96  LTRNPNRRVGIYYDRLTAFVSYRNQQITPQVMLPPLFHEKQSTVAMSPVLGGGAVAVPLE 155
            +RN N R+GIYYDRL  + +YRNQQIT +  +PP +   +     SP + G +V +   
Sbjct: 77  ASRNRNSRIGIYYDRLHVYATYRNQQITLRTAIPPTYQGHKEDNVWSPFVYGNSVPIAPF 136

Query: 156 VGNGLVTDEAIGVVGLRVVLLGKLRWKAGPVKTGRYAVIVKCDVLVGLKSGVVG 210
               L  ++  G V L +   G++RWK G + TG+Y + V+C   + L     G
Sbjct: 137 NAVALGDEQNRGFVTLIIRADGRVRWKVGTLITGKYHLHVRCQAFINLADKAAG 190

[Close]

BLAST of Cp4.1LG08g00120 vs. Swiss-Prot
Match: YLS9_ARATH (Protein YLS9 OS=Arabidopsis thaliana GN=YLS9 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-11
Identity = 48/170 (28.24%), Postives = 84/170 (49.41%), Query Frame = 1


Query: 41  CACISIF-------LLIIGVVALTLWLVYRPTHPQFKVVGAAIYELNISSLP-LLSTRMQ 100
           C  +S+F       ++I+GV AL  WL+ RP   +F V  A++   + +S   +L   + 
Sbjct: 35  CCLLSLFVKVIISLIVILGVAALIFWLIVRPRAIKFHVTDASLTRFDHTSPDNILRYNLA 94

Query: 101 FTILTRNPNRRVGIYYDRLTAFVSYRNQQITPQVMLPPLFHEKQSTVAMSPVLGGGAVAV 160
            T+  RNPN+R+G+YYDR+ A   Y  ++ +  + L P +   ++T  ++P   G  + +
Sbjct: 95  LTVPVRNPNKRIGLYYDRIEAHAYYEGKRFS-TITLTPFYQGHKNTTVLTPTFQGQNLVI 154

Query: 161 PLEVGNG--LVTDEAIGVVGLRVVLLGKLRWKAGPVKTGRYAVIVKCDVL 201
               G    L  +   GV  + +    ++R+K G +K  R    V CD L
Sbjct: 155 -FNAGQSRTLNAERISGVYNIEIKFRLRVRFKLGDLKFRRIKPKVDCDDL 202

[Close]

BLAST of Cp4.1LG08g00120 vs. Swiss-Prot
Match: NHL3_ARATH (NDR1/HIN1-Like protein 3 OS=Arabidopsis thaliana GN=NHL3 PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 6.0e-11
Identity = 44/158 (27.85%), Postives = 76/158 (48.10%), Query Frame = 1


Query: 49  LIIGVVALTLWLVYRPTHPQFKVVGAAIYELNISSLPLLSTRMQFTILTRNPNRRVGIYY 108
           +++G+ AL +WL++RP   +F V  A + E  +     L   +      RNPNRR+G+YY
Sbjct: 57  VLLGIAALIIWLIFRPNAIKFHVTDAKLTEFTLDPTNNLRYNLDLNFTIRNPNRRIGVYY 116

Query: 109 DRLTAFVSYRNQQITPQVMLPPLFH-EKQSTVAMSPVLGGGAVAVPLEVGNGLVTDEAIG 168
           D +     Y +Q+      +   +   K +TV  + ++G   V +       L  D    
Sbjct: 117 DEIEVRGYYGDQRFGMSNNISKFYQGHKNTTVVGTKLVGQQLVLLDGGERKDLNEDVNSQ 176

Query: 169 VVGLRVVLLGKLRWKAGPVKTGRYAVIVKCDVLVGLKS 206
           +  +   L  K+R+K G +K+ R+   +KCD+ V L S
Sbjct: 177 IYRIDAKLRLKIRFKFGLIKSWRFKPKIKCDLKVPLTS 214

[Close]

BLAST of Cp4.1LG08g00120 vs. TrEMBL
Match: A0A0A0L882_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116630 PE=4 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 3.6e-87
Identity = 175/226 (77.43%), Postives = 194/226 (85.84%), Query Frame = 1


Query: 1   MAERDEAQEQKQEHVQNPKDLKEEKKGA---SPYYPKTTRRSVCACISIFLLIIGVVALT 60
           MAER+E    +Q  V + KDLKEEK  A   S YY K TRRSVCACISIFLL+IGVVALT
Sbjct: 1   MAERNE----EQGDVHDQKDLKEEKNRARFSSRYYSKRTRRSVCACISIFLLVIGVVALT 60

Query: 61  LWLVYRPTHPQFKVVGAAIYELNISSLPLLSTRMQFTILTRNPNRRVGIYYDRLTAFVSY 120
           LWLVYRP  PQF VVGAAIY+LN+SSLPLLST MQFTI+TRNPNRRV IYYDRLT FVSY
Sbjct: 61  LWLVYRPIDPQFTVVGAAIYDLNMSSLPLLSTTMQFTIVTRNPNRRVSIYYDRLTVFVSY 120

Query: 121 RNQQITPQVMLPPLFHEKQSTVAMSPVLGGGAVAVPLEVGNGLVTDEAIGVVGLRVVLLG 180
           RNQQIT QV+LPPL HEK+STVAMSPVLGGGAVAV LEV NGLVTD+ IGV+GLRVVLLG
Sbjct: 121 RNQQITSQVILPPLAHEKRSTVAMSPVLGGGAVAVSLEVANGLVTDQTIGVLGLRVVLLG 180

Query: 181 KLRWKAGPVKTGRYAVIVKCDVLVGLKSGVVGQVPLLGFPACQVDI 224
           +LRWKAGP+KTGRY+V VKCDVLVG+K G+VGQ+P+L  P C+VDI
Sbjct: 181 RLRWKAGPLKTGRYSVYVKCDVLVGVKRGLVGQLPMLASPPCKVDI 222

[Close]

BLAST of Cp4.1LG08g00120 vs. TrEMBL
Match: M5X269_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011309mg PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 7.2e-72
Identity = 143/214 (66.82%), Postives = 168/214 (78.50%), Query Frame = 1


Query: 10  QKQEHVQNPKDLKEEKKGASPYYPKTTRRSVCACISIFLLIIGVVALTLWLVYRPTHPQF 69
           ++++H +NP   K+    +SP Y     RS+C C+SIFLL+ GV ALTLWLVYRP  PQF
Sbjct: 3   EEEDHKKNPTT-KKRYMASSPIYTSGPYRSICTCLSIFLLLAGVTALTLWLVYRPHKPQF 62

Query: 70  KVVGAAIYELNISSLPLLSTRMQFTILTRNPNRRVGIYYDRLTAFVSYRNQQITPQVMLP 129
            VVGAA+Y+LN +S PL+ST MQFT++T NPNRRV IYYDRL AFVSY+NQ ITPQV LP
Sbjct: 63  TVVGAAVYDLNATSPPLISTTMQFTLVTHNPNRRVSIYYDRLYAFVSYKNQAITPQVALP 122

Query: 130 PLFHEKQSTVAMSPVLGGGAVAVPLEVGNGLVTDEAIGVVGLRVVLLGKLRWKAGPVKTG 189
            L HE +STVA+SPVLGG AV V LEV NGL  DEA GVVGLRVV++G+LRWKAG ++T 
Sbjct: 123 SLVHEHRSTVAVSPVLGGRAVPVSLEVVNGLTMDEAYGVVGLRVVVMGRLRWKAGAIRTA 182

Query: 190 RYAVIVKCDVLVGLKSGVVGQVPLLGFPACQVDI 224
            Y V VKCDVLVGLK G VGQVPLLG P+CQVDI
Sbjct: 183 HYGVYVKCDVLVGLKRGFVGQVPLLGNPSCQVDI 215

[Close]

BLAST of Cp4.1LG08g00120 vs. TrEMBL
Match: F6I2Y6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0048g02530 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 8.8e-70
Identity = 136/199 (68.34%), Postives = 156/199 (78.39%), Query Frame = 1


Query: 25  KKGASPYYPKTTRRSVCACISIFLLIIGVVALTLWLVYRPTHPQFKVVGAAIYELNISSL 84
           +K  SPY PK  RR+ C  I I LL+ G+ AL +WLVYRP  PQF V+G AIY+LN +S 
Sbjct: 4   EKPPSPYRPKDPRRACCTFIFILLLLAGITALVVWLVYRPQEPQFTVMGVAIYDLNTTSP 63

Query: 85  PLLSTRMQFTILTRNPNRRVGIYYDRLTAFVSYRNQQITPQVMLPPLFHEKQSTVAMSPV 144
           PL+ST MQFTI+TRNPN+RV IYYDRL+AFVSYRNQ ITP  MLPPL+H K STVA+SPV
Sbjct: 64  PLISTNMQFTIVTRNPNKRVSIYYDRLSAFVSYRNQAITPPAMLPPLYHRKHSTVALSPV 123

Query: 145 LGGGAVAVPLEVGNGLVTDEAIGVVGLRVVLLGKLRWKAGPVKTGRYAVIVKCDVLVGLK 204
           LGG AV V LEV NGLV DEA GV+GLR+VLLG+L+WKAG   +  Y V VKCDVLVGLK
Sbjct: 124 LGGEAVPVSLEVANGLVMDEAYGVMGLRLVLLGRLKWKAGAFWSMHYGVYVKCDVLVGLK 183

Query: 205 SGVVGQVPLLGFPACQVDI 224
            GVVGQVP+LG P C VDI
Sbjct: 184 KGVVGQVPMLGSPLCNVDI 202

[Close]

BLAST of Cp4.1LG08g00120 vs. TrEMBL
Match: A5BJJ5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027904 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 8.8e-70
Identity = 136/199 (68.34%), Postives = 156/199 (78.39%), Query Frame = 1


Query: 25  KKGASPYYPKTTRRSVCACISIFLLIIGVVALTLWLVYRPTHPQFKVVGAAIYELNISSL 84
           +K  SPY PK  RR+ C  I I LL+ G+ AL +WLVYRP  PQF V+G AIY+LN +S 
Sbjct: 793 EKPPSPYRPKDPRRACCTFIFILLLLAGITALVVWLVYRPQEPQFTVMGVAIYDLNTTSP 852

Query: 85  PLLSTRMQFTILTRNPNRRVGIYYDRLTAFVSYRNQQITPQVMLPPLFHEKQSTVAMSPV 144
           PL+ST MQFTI+TRNPN+RV IYYDRL+AFVSYRNQ ITP  MLPPL+H K STVA+SPV
Sbjct: 853 PLISTNMQFTIVTRNPNKRVSIYYDRLSAFVSYRNQAITPPAMLPPLYHRKHSTVALSPV 912

Query: 145 LGGGAVAVPLEVGNGLVTDEAIGVVGLRVVLLGKLRWKAGPVKTGRYAVIVKCDVLVGLK 204
           LGG AV V LEV NGLV DEA GV+GLR+VLLG+L+WKAG   +  Y V VKCDVLVGLK
Sbjct: 913 LGGEAVPVSLEVANGLVMDEAYGVMGLRLVLLGRLKWKAGAFWSMHYGVYVKCDVLVGLK 972

Query: 205 SGVVGQVPLLGFPACQVDI 224
            GVVGQVP+LG P C VDI
Sbjct: 973 KGVVGQVPMLGSPXCNVDI 991

[Close]

BLAST of Cp4.1LG08g00120 vs. TrEMBL
Match: B9RNK9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1339920 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 1.6e-66
Identity = 131/219 (59.82%), Postives = 163/219 (74.43%), Query Frame = 1


Query: 5   DEAQEQKQEHVQNPKDLKEEKKGASPYYPKTTRRSVCACISIFLLIIGVVALTLWLVYRP 64
           DE   Q Q+H+  P           P Y    RR++C  I+IFLL+ G+    +WL+YRP
Sbjct: 19  DEKHHQPQKHMSPP-----------PSYKSDPRRTICTVITIFLLLAGLAVFIVWLIYRP 78

Query: 65  THPQFKVVGAAIYELNISSLPLLSTRMQFTILTRNPNRRVGIYYDRLTAFVSYRNQQITP 124
             P+F V+GAAIY+LN +S P +S  MQFTI+TRNPN+RV I YD+L+A+VSYRNQ ITP
Sbjct: 79  HKPRFTVLGAAIYDLNTTSPPFVSASMQFTIVTRNPNKRVAIIYDKLSAYVSYRNQAITP 138

Query: 125 QVMLPPLFHEKQSTVAMSPVLGGGAVAVPLEVGNGLVTDEAIGVVGLRVVLLGKLRWKAG 184
            V+LPPL+H+K+STVA+SPVLGG  V V +EV NGLV DE+ GVV LRVVLLG+LRWKAG
Sbjct: 139 TVVLPPLYHDKKSTVALSPVLGGAQVPVSVEVANGLVMDESYGVVALRVVLLGRLRWKAG 198

Query: 185 PVKTGRYAVIVKCDVLVGLKSGVVGQVPLLGFPACQVDI 224
            +KTGRY V VKCD+ VGLK G+VGQVPLLG P C+VD+
Sbjct: 199 VIKTGRYGVYVKCDIWVGLKRGLVGQVPLLGSPQCKVDV 226

[Close]

BLAST of Cp4.1LG08g00120 vs. TAIR10
Match: AT4G01410.1 (AT4G01410.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 205.7 bits (522), Expect = 3.0e-53
Identity = 100/187 (53.48%), Postives = 135/187 (72.19%), Query Frame = 1


Query: 37  RRSVCACISIFLLIIGVVALTLWLVYRPTHPQFKVVGAAIYELNISSLPLLSTRMQFTIL 96
           RR++C  I   L+I+G++AL LWLVYRP  P+  VVGAAIY+LN ++ PL+ST +QF++L
Sbjct: 41  RRAICGAIFTILVILGIIALILWLVYRPHKPRLTVVGAAIYDLNFTAPPLISTSVQFSVL 100

Query: 97  TRNPNRRVGIYYDRLTAFVSYRNQQITPQVMLPPLFHEKQSTVAMSPVLGGGAVAVPLEV 156
            RNPNRRV I+YD+L+ +V+Y++Q ITP + LPPL    +STV ++PV+GG  + V  EV
Sbjct: 101 ARNPNRRVSIHYDKLSMYVTYKDQIITPPLPLPPLRLGHKSTVVIAPVMGGNGIPVSPEV 160

Query: 157 GNGLVTDEAIGVVGLRVVLLGKLRWKAGPVKTGRYAVIVKCDVLVGLKSGVVGQVPLLGF 216
            NGL  DEA GVV +RVV+ G+LRWKAG +KTGRY    +CDV +       GQVPLL  
Sbjct: 161 ANGLKNDEAYGVVLMRVVIFGRLRWKAGAIKTGRYGFYARCDVWLRFNPSSNGQVPLLAP 220

Query: 217 PACQVDI 224
             C+VD+
Sbjct: 221 STCKVDV 227

[Close]

BLAST of Cp4.1LG08g00120 vs. TAIR10
Match: AT3G52470.1 (AT3G52470.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 120.2 bits (300), Expect = 1.7e-27
Identity = 61/172 (35.47%), Postives = 96/172 (55.81%), Query Frame = 1


Query: 38  RSVCACISIFLLIIGVVALTLWLVYRPTHPQFKVVGAAIYELNISSLPLLSTRMQFTILT 97
           R +CA I  F++I+ +    +W++ RPT P+F +  A +Y  N+S   LL++  Q TI +
Sbjct: 17  RKLCAAIIAFIVIVLITIFLVWVILRPTKPRFVLQDATVYAFNLSQPNLLTSNFQVTIAS 76

Query: 98  RNPNRRVGIYYDRLTAFVSYRNQQITPQVMLPPLFHEKQSTVAMSPVLGGGAVAVPLEVG 157
           RNPN ++GIYYDRL  + +Y NQQIT +  +PP +   +     SP + G AV +     
Sbjct: 77  RNPNSKIGIYYDRLHVYATYMNQQITLRTAIPPTYQGHKEVNVWSPFVYGTAVPIAPYNS 136

Query: 158 NGLVTDEAIGVVGLRVVLLGKLRWKAGPVKTGRYAVIVKCDVLVGLKSGVVG 210
             L  ++  G VGL +   G +RWK   + TG+Y + V+C   + L +   G
Sbjct: 137 VALGEEKDRGFVGLMIRADGTVRWKVRTLITGKYHIHVRCQAFINLGNKAAG 188

[Close]

BLAST of Cp4.1LG08g00120 vs. TAIR10
Match: AT5G06330.1 (AT5G06330.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 118.6 bits (296), Expect = 4.8e-27
Identity = 72/188 (38.30%), Postives = 106/188 (56.38%), Query Frame = 1


Query: 27  GASPYYPKTTRRSVCACISIFLLIIGVVALTLWLVYRPTHPQFKVVGAAIYELNISSLP- 86
           G+   +    R+ V   ISI LL+I VV L +W + +P+ P+F +  A ++  N+S  P 
Sbjct: 7   GSHDSHSSCNRKIVIWTISIILLLILVVILLVWAILQPSKPRFVLQDATVFNFNVSGNPP 66

Query: 87  -LLSTRMQFTILTRNPNRRVGIYYDRLTAFVSYRNQQIT-PQVMLPPLFHEKQSTVAMSP 146
            LL++  QFT+ +RNPN ++GIYYDRL  + SYR+QQIT P  ML      K+  V  SP
Sbjct: 67  NLLTSNFQFTLSSRNPNDKIGIYYDRLDVYASYRSQQITLPSPMLTTYQGHKEVNV-WSP 126

Query: 147 VLGGGAVAVPLEVGNGLVTDEAIGVVGLRVVLLGKLRWKAGPVKTGRYAVIVKCDVLVGL 206
            +GG +V V       L  D + G + L + L G++RWK G   TG+Y + V+C  L+  
Sbjct: 127 FVGGYSVPVAPYNAFYLDQDHSSGAIMLMLHLDGRVRWKVGSFITGKYHLHVRCHALINF 186

Query: 207 KSGVVGQV 212
            S   G +
Sbjct: 187 GSSAAGVI 193

[Close]

BLAST of Cp4.1LG08g00120 vs. TAIR10
Match: AT2G35960.1 (AT2G35960.1 NDR1/HIN1-like 12)

HSP 1 Score: 114.8 bits (286), Expect = 7.0e-26
Identity = 59/174 (33.91%), Postives = 95/174 (54.60%), Query Frame = 1


Query: 36  TRRSVCACISIFLLIIGVVALTLWLVYRPTHPQFKVVGAAIYELNISSLPLLSTRMQFTI 95
           T   +C  I  F++I+ +    +W++ +PT P+F +  A +Y  N+S   LL++  Q TI
Sbjct: 17  TASRICGVIIGFIIIVLITIFLVWIILQPTKPRFILQDATVYAFNLSQPNLLTSNFQITI 76

Query: 96  LTRNPNRRVGIYYDRLTAFVSYRNQQITPQVMLPPLFHEKQSTVAMSPVLGGGAVAVPLE 155
            +RN N R+GIYYDRL  + +YRNQQIT +  +PP +   +     SP + G +V +   
Sbjct: 77  ASRNRNSRIGIYYDRLHVYATYRNQQITLRTAIPPTYQGHKEDNVWSPFVYGNSVPIAPF 136

Query: 156 VGNGLVTDEAIGVVGLRVVLLGKLRWKAGPVKTGRYAVIVKCDVLVGLKSGVVG 210
               L  ++  G V L +   G++RWK G + TG+Y + V+C   + L     G
Sbjct: 137 NAVALGDEQNRGFVTLIIRADGRVRWKVGTLITGKYHLHVRCQAFINLADKAAG 190

[Close]

BLAST of Cp4.1LG08g00120 vs. TAIR10
Match: AT3G11660.1 (AT3G11660.1 NDR1/HIN1-like 1)

HSP 1 Score: 109.4 bits (272), Expect = 2.9e-24
Identity = 62/176 (35.23%), Postives = 96/176 (54.55%), Query Frame = 1


Query: 38  RSVCACISIFLLIIGVVALTLWLVYRPTHPQFKVVGAAIYELNISSLP--LLSTRMQFTI 97
           R +   I   L II +  L +W + +P+ P+F +  A +Y  N+S  P  LL++  Q T+
Sbjct: 16  RRIFWSIIFVLFIIFLTILLIWAILQPSKPRFILQDATVYAFNVSGNPPNLLTSNFQITL 75

Query: 98  LTRNPNRRVGIYYDRLTAFVSYRNQQITPQVMLPPLFHEKQSTVAMSPVLGGGAVAVPLE 157
            +RNPN ++GIYYDRL  + +YR+QQIT    +PP +   +     SP + G +V +   
Sbjct: 76  SSRNPNNKIGIYYDRLDVYATYRSQQITFPTSIPPTYQGHKDVDIWSPFVYGTSVPIAPF 135

Query: 158 VGNGLVTDEAIGVVGLRVVLLGKLRWKAGPVKTGRYAVIVKCDVLVGLKSGVVGQV 212
            G  L TD+  GVV L +   G++RWK G   TG+Y + VKC   +   +   G +
Sbjct: 136 NGVSLDTDKDNGVVLLIIRADGRVRWKVGTFITGKYHLHVKCPAYINFGNKANGVI 191

[Close]

BLAST of Cp4.1LG08g00120 vs. NCBI nr
Match: gi|659074695|ref|XP_008437747.1| (PREDICTED: protein YLS9-like [Cucumis melo])

HSP 1 Score: 330.5 bits (846), Expect = 2.3e-87
Identity = 175/226 (77.43%), Postives = 195/226 (86.28%), Query Frame = 1


Query: 1   MAERDEAQEQKQEHVQNPKDLKEEKKGAS---PYYPKTTRRSVCACISIFLLIIGVVALT 60
           MAER+E    +Q+ V N +DLKEEK  A     YY K+TRRSVCACISIFLLIIGVVALT
Sbjct: 1   MAERNE----EQDDVHNKRDLKEEKNRARFSHRYYSKSTRRSVCACISIFLLIIGVVALT 60

Query: 61  LWLVYRPTHPQFKVVGAAIYELNISSLPLLSTRMQFTILTRNPNRRVGIYYDRLTAFVSY 120
           LWLVYRP  PQF VVGAAIY+LN+SSLPLLST MQFTI+TRNPNRRV IYYDRLT FVSY
Sbjct: 61  LWLVYRPIDPQFTVVGAAIYDLNMSSLPLLSTTMQFTIVTRNPNRRVSIYYDRLTIFVSY 120

Query: 121 RNQQITPQVMLPPLFHEKQSTVAMSPVLGGGAVAVPLEVGNGLVTDEAIGVVGLRVVLLG 180
           RNQQIT QV+LPPL HEK+STVAMSPVLGGGAVAV LEV NGLVTD+ IGV+GLRVVLLG
Sbjct: 121 RNQQITSQVILPPLAHEKRSTVAMSPVLGGGAVAVSLEVANGLVTDQTIGVLGLRVVLLG 180

Query: 181 KLRWKAGPVKTGRYAVIVKCDVLVGLKSGVVGQVPLLGFPACQVDI 224
           +LRWKAGP+KTGRYAV VKCDVL+G+K G+VGQ+P+L  P C+VDI
Sbjct: 181 RLRWKAGPLKTGRYAVYVKCDVLMGVKRGLVGQLPMLASPPCKVDI 222

[Close]

BLAST of Cp4.1LG08g00120 vs. NCBI nr
Match: gi|449431934|ref|XP_004133755.1| (PREDICTED: protein YLS9-like [Cucumis sativus])

HSP 1 Score: 329.3 bits (843), Expect = 5.1e-87
Identity = 175/226 (77.43%), Postives = 194/226 (85.84%), Query Frame = 1


Query: 1   MAERDEAQEQKQEHVQNPKDLKEEKKGA---SPYYPKTTRRSVCACISIFLLIIGVVALT 60
           MAER+E    +Q  V + KDLKEEK  A   S YY K TRRSVCACISIFLL+IGVVALT
Sbjct: 1   MAERNE----EQGDVHDQKDLKEEKNRARFSSRYYSKRTRRSVCACISIFLLVIGVVALT 60

Query: 61  LWLVYRPTHPQFKVVGAAIYELNISSLPLLSTRMQFTILTRNPNRRVGIYYDRLTAFVSY 120
           LWLVYRP  PQF VVGAAIY+LN+SSLPLLST MQFTI+TRNPNRRV IYYDRLT FVSY
Sbjct: 61  LWLVYRPIDPQFTVVGAAIYDLNMSSLPLLSTTMQFTIVTRNPNRRVSIYYDRLTVFVSY 120

Query: 121 RNQQITPQVMLPPLFHEKQSTVAMSPVLGGGAVAVPLEVGNGLVTDEAIGVVGLRVVLLG 180
           RNQQIT QV+LPPL HEK+STVAMSPVLGGGAVAV LEV NGLVTD+ IGV+GLRVVLLG
Sbjct: 121 RNQQITSQVILPPLAHEKRSTVAMSPVLGGGAVAVSLEVANGLVTDQTIGVLGLRVVLLG 180

Query: 181 KLRWKAGPVKTGRYAVIVKCDVLVGLKSGVVGQVPLLGFPACQVDI 224
           +LRWKAGP+KTGRY+V VKCDVLVG+K G+VGQ+P+L  P C+VDI
Sbjct: 181 RLRWKAGPLKTGRYSVYVKCDVLVGVKRGLVGQLPMLASPPCKVDI 222

[Close]

BLAST of Cp4.1LG08g00120 vs. NCBI nr
Match: gi|645284125|ref|XP_008245646.1| (PREDICTED: protein YLS9 [Prunus mume])

HSP 1 Score: 281.6 bits (719), Expect = 1.2e-72
Identity = 144/214 (67.29%), Postives = 169/214 (78.97%), Query Frame = 1


Query: 10  QKQEHVQNPKDLKEEKKGASPYYPKTTRRSVCACISIFLLIIGVVALTLWLVYRPTHPQF 69
           ++++H +NP   K+    +SP YP    RS+C C+SIFLL+ GV ALTLWLVYRP  PQF
Sbjct: 19  EEEDHKKNPTT-KKRYMASSPIYPSGPYRSICTCLSIFLLLAGVTALTLWLVYRPHKPQF 78

Query: 70  KVVGAAIYELNISSLPLLSTRMQFTILTRNPNRRVGIYYDRLTAFVSYRNQQITPQVMLP 129
            VVGAA+Y+LN +S PL+ST MQFT++T NPNRRV IYYDRL AFVSY+NQ ITPQV LP
Sbjct: 79  TVVGAAVYDLNATSPPLISTTMQFTLVTHNPNRRVSIYYDRLYAFVSYKNQAITPQVALP 138

Query: 130 PLFHEKQSTVAMSPVLGGGAVAVPLEVGNGLVTDEAIGVVGLRVVLLGKLRWKAGPVKTG 189
            L HE +STVA+SPVLGG AV V LEV NGL  DEA GVVGLRVV++G+LRWKAG ++T 
Sbjct: 139 SLVHEHRSTVAVSPVLGGRAVPVSLEVVNGLTMDEAYGVVGLRVVVMGRLRWKAGAIRTA 198

Query: 190 RYAVIVKCDVLVGLKSGVVGQVPLLGFPACQVDI 224
            Y V VKCDVLVGLK G VGQVPLLG P+CQVDI
Sbjct: 199 HYGVYVKCDVLVGLKRGFVGQVPLLGNPSCQVDI 231

[Close]

BLAST of Cp4.1LG08g00120 vs. NCBI nr
Match: gi|596005536|ref|XP_007218377.1| (hypothetical protein PRUPE_ppa011309mg [Prunus persica])

HSP 1 Score: 278.5 bits (711), Expect = 1.0e-71
Identity = 143/214 (66.82%), Postives = 168/214 (78.50%), Query Frame = 1


Query: 10  QKQEHVQNPKDLKEEKKGASPYYPKTTRRSVCACISIFLLIIGVVALTLWLVYRPTHPQF 69
           ++++H +NP   K+    +SP Y     RS+C C+SIFLL+ GV ALTLWLVYRP  PQF
Sbjct: 3   EEEDHKKNPTT-KKRYMASSPIYTSGPYRSICTCLSIFLLLAGVTALTLWLVYRPHKPQF 62

Query: 70  KVVGAAIYELNISSLPLLSTRMQFTILTRNPNRRVGIYYDRLTAFVSYRNQQITPQVMLP 129
            VVGAA+Y+LN +S PL+ST MQFT++T NPNRRV IYYDRL AFVSY+NQ ITPQV LP
Sbjct: 63  TVVGAAVYDLNATSPPLISTTMQFTLVTHNPNRRVSIYYDRLYAFVSYKNQAITPQVALP 122

Query: 130 PLFHEKQSTVAMSPVLGGGAVAVPLEVGNGLVTDEAIGVVGLRVVLLGKLRWKAGPVKTG 189
            L HE +STVA+SPVLGG AV V LEV NGL  DEA GVVGLRVV++G+LRWKAG ++T 
Sbjct: 123 SLVHEHRSTVAVSPVLGGRAVPVSLEVVNGLTMDEAYGVVGLRVVVMGRLRWKAGAIRTA 182

Query: 190 RYAVIVKCDVLVGLKSGVVGQVPLLGFPACQVDI 224
            Y V VKCDVLVGLK G VGQVPLLG P+CQVDI
Sbjct: 183 HYGVYVKCDVLVGLKRGFVGQVPLLGNPSCQVDI 215

[Close]

BLAST of Cp4.1LG08g00120 vs. NCBI nr
Match: gi|1009142786|ref|XP_015888911.1| (PREDICTED: protein YLS9 isoform X2 [Ziziphus jujuba])

HSP 1 Score: 277.3 bits (708), Expect = 2.3e-71
Identity = 136/203 (67.00%), Postives = 162/203 (79.80%), Query Frame = 1


Query: 21  LKEEKKGASPYYPKTTRRSVCACISIFLLIIGVVALTLWLVYRPTHPQFKVVGAAIYELN 80
           + + K+    Y P   RR+ C  ++I LL+ G+ ALTLWLVYRP  P+F VVGAAIYELN
Sbjct: 1   MSDGKQNGRTYRPSDPRRACCTFLTILLLLAGITALTLWLVYRPHKPKFTVVGAAIYELN 60

Query: 81  ISSLPLLSTRMQFTILTRNPNRRVGIYYDRLTAFVSYRNQQITPQVMLPPLFHEKQSTVA 140
            S+ PL+ST MQFT++TRNPN+RV IYYDRL+AFVSYRNQ ITPQV LPPL+HEK+STVA
Sbjct: 61  TSTQPLISTTMQFTVVTRNPNKRVSIYYDRLSAFVSYRNQAITPQVSLPPLYHEKKSTVA 120

Query: 141 MSPVLGGGAVAVPLEVGNGLVTDEAIGVVGLRVVLLGKLRWKAGPVKTGRYAVIVKCDVL 200
           +SPVLGGG V V +EV N L  D++ GVVGLR VLLG+LRWKAG V+TG Y V VKCDVL
Sbjct: 121 LSPVLGGGTVPVSVEVVNSLAMDQSYGVVGLRFVLLGRLRWKAGTVRTGHYGVYVKCDVL 180

Query: 201 VGLKSGVVGQVPLLGFPACQVDI 224
           VG+K GV+GQVPLLG P C+VDI
Sbjct: 181 VGIKKGVLGQVPLLGSPGCKVDI 203

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g00120 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NHL12_ARATH	1.2e-24	33.91	NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana GN=NHL12 PE=2 SV=1	[more]
YLS9_ARATH	1.2e-11	28.24	Protein YLS9 OS=Arabidopsis thaliana GN=YLS9 PE=2 SV=1	[more]
NHL3_ARATH	6.0e-11	27.85	NDR1/HIN1-Like protein 3 OS=Arabidopsis thaliana GN=NHL3 PE=1 SV=1	[more]

BLAST of Cp4.1LG08g00120 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L882_CUCSA	3.6e-87	77.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116630 PE=4 SV=1	[more]
M5X269_PRUPE	7.2e-72	66.82	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011309mg PE=4 SV=1	[more]
F6I2Y6_VITVI	8.8e-70	68.34	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0048g02530 PE=4 SV=...	[more]
A5BJJ5_VITVI	8.8e-70	68.34	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027904 PE=4 SV=1	[more]
B9RNK9_RICCO	1.6e-66	59.82	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1339920 PE=4 SV=1	[more]

BLAST of Cp4.1LG08g00120 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G01410.1	3.0e-53	53.48	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT3G52470.1	1.7e-27	35.47	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT5G06330.1	4.8e-27	38.30	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT2G35960.1	7.0e-26	33.91	NDR1/HIN1-like 12	[more]
AT3G11660.1	2.9e-24	35.23	NDR1/HIN1-like 1	[more]

BLAST of Cp4.1LG08g00120 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659074695\|ref\|XP_008437747.1\|	2.3e-87	77.43	PREDICTED: protein YLS9-like [Cucumis melo]	[more]
gi\|449431934\|ref\|XP_004133755.1\|	5.1e-87	77.43	PREDICTED: protein YLS9-like [Cucumis sativus]	[more]
gi\|645284125\|ref\|XP_008245646.1\|	1.2e-72	67.29	PREDICTED: protein YLS9 [Prunus mume]	[more]
gi\|596005536\|ref\|XP_007218377.1\|	1.0e-71	66.82	hypothetical protein PRUPE_ppa011309mg [Prunus persica]	[more]
gi\|1009142786\|ref\|XP_015888911.1\|	2.3e-71	67.00	PREDICTED: protein YLS9 isoform X2 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004864	LEA_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0000160	phosphorelay signal transduction system
cellular_component	GO:0044464	cell part
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g00120.1	Cp4.1LG08g00120.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA-14	PFAM	PF03168	LEA_2	coord: 95..197 score: 4.
None	No IPR available	unknown	Coil	Coil	coord: 4..24 scor
None	No IPR available	PANTHER	PTHR31415	FAMILY NOT NAMED	coord: 2..223 score: 1.7E
None	No IPR available	PANTHER	PTHR31415:SF9	SUBFAMILY NOT NAMED	coord: 2..223 score: 1.7E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG08g00120	Cucsa.260120	Cucumber (Gy14) v1	cgycpeB0687
Cp4.1LG08g00120	CmaCh00G005020	Cucurbita maxima (Rimu)	cmacpeB023
Cp4.1LG08g00120	CmaCh06G009120	Cucurbita maxima (Rimu)	cmacpeB850
Cp4.1LG08g00120	CmoCh06G009520	Cucurbita moschata (Rifu)	cmocpeB796
Cp4.1LG08g00120	Cla021058	Watermelon (97103) v1	cpewmB845
Cp4.1LG08g00120	Csa3G116630	Cucumber (Chinese Long) v2	cpecuB862
Cp4.1LG08g00120	MELO3C005927	Melon (DHL92) v3.5.1	cpemeB815
Cp4.1LG08g00120	CSPI03G06980	Wild cucumber (PI 183967)	cpecpiB864
Cp4.1LG08g00120	MELO3C005927.2	Melon (DHL92) v3.6.1	cpemedB951
Cp4.1LG08g00120	CsaV3_3G007080	Cucumber (Chinese Long) v3	cpecucB1058
Cp4.1LG08g00120	CsGy3G007130	Cucumber (Gy14) v2	cgybcpeB454
Cp4.1LG08g00120	Carg22311	Silver-seed gourd	carcpeB0835

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG08g00120	Cucurbita maxima (Rimu)	cmacpeB013
Cp4.1LG08g00120	Cucurbita maxima (Rimu)	cmacpeB855