CmaCh00G005020 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh00G005020
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Location	Cma_Chr00 : 36312674 .. 36313950 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATGGAGCATTGGGCCATAAAATGGGATGTGAGGGCTACCTTTTGGTACCAACCATTTGAGTTGAGATCCTCTGAAAACCAAGAGCCTAAGTCATTAGTTTTTGGTCAAATTAGAGAGTTATACTCGACCCCTTTGGCTCAAATGAGTCCCTACACACTCAGACAACAATTAGAACCAAACTTGCCCAATAAAGGCCTATACCGTTGGGTTCAAGGGAGGAAGAGGAAGAGTTTTGGTGAAGACATTGAAGAGAAACACGTGTTAAGCAGCAACGGCACGTGGGATCAGACTAAGCTCCCATGTAAACGTAAGAAATTTACACAACAATCCAACACAACCCAGAGGCTCCAAAACCCAAAACATGTAAACAAAGCAACACAGCCACCTTACACTTTATCATGCACAAATATTTCAAATTAATTTTACATTTATCCATATAATTTCCTGGATTCTGTCCCCAAATCTTTCCCCTGTTCCACTTTCTCCCATTGTCTCACAAAAGAATCGATCCTTATTGTCACAATTAAAGCATTGATTCTTATTCCTACACTTAACTTTCCCTCTTTCCCCTTTCTATTTATCTTTAAACTTCTTTGCATCTTAATCCAAGCATGGCAGAAAGAGATGAAGCGCAAGAACACGTCCAAAATCCGAAGGATTTGAAAGAAGAAAAGAAGGGAGCAAGACCATGCTACCCAAAAACCACTCGGCGCTCTGTTTTCGCATGCATATCCATCTTCCTCCTCATAATTGGCGTGGTGGCTCTCACTCTCTGGCTTGTGTACCGCCCCACTCACCCTCAATTCAGGGTGGTTGGAGCCGCAATATACGAGCTCAACATCTCATCTCTGCCACTGCTGTCCACAAGGATGCAATTTACAATCCTTACAAGGAACCCCAACAGGCGAGTTGGGATCTATTATGACAGACTCACTGCGTTCGTGTCGTATAGGAACCAGCAGATAACGCCGCAGGTGATGCTGCCTCCCCTGTTCCACGAAAAGCGGAGCACAGTGGCGATGTCCCCTGTACTAGGAGGTGGGGCGGTGGCAGTGCCGTTGGAGGTGGGAAATGGGTTGGTCACGGATGAAGCGATTGGAGTTGTGGGGTTGAGAGTTGTGTTGTTGGGGAGACTAAGATGGAAAGCTGGGCCAGTCAAGACTGGGCGTTATGCGGTAATTGTGAAATGTGACGTGTTGGTGGGTCTCAAAAGTGGGGTGGTGGGTCAAGTTCCGTTGCTTGGTTTCCCCGCTTGCCAGGTTGATATTTAG

mRNA sequence

ATGGCGATGGAGCATTGGGCCATAAAATGGGATGTGAGGGCTACCTTTTGGTACCAACCATTTGAGTTGAGATCCTCTGAAAACCAAGAGCCTAAGTCATTAGTTTTTGGTCAAATTAGAGAGTTATACTCGACCCCTTTGGCTCAAATGAGTCCCTACACACTCAGACAACAATTAGAACCAAACTTGCCCAATAAAGGCCTATACCGTTGGGTTCAAGGGAGGAAGAGGAAGAGTTTTGGTGAAGACATTGAAGAGAAACACGTGTTAAGCAGCAACGGCACGTGGGATCAGACTAAGCTCCCATGTAAACAAAGAGATGAAGCGCAAGAACACGTCCAAAATCCGAAGGATTTGAAAGAAGAAAAGAAGGGAGCAAGACCATGCTACCCAAAAACCACTCGGCGCTCTGTTTTCGCATGCATATCCATCTTCCTCCTCATAATTGGCGTGGTGGCTCTCACTCTCTGGCTTGTGTACCGCCCCACTCACCCTCAATTCAGGGTGGTTGGAGCCGCAATATACGAGCTCAACATCTCATCTCTGCCACTGCTGTCCACAAGGATGCAATTTACAATCCTTACAAGGAACCCCAACAGGCGAGTTGGGATCTATTATGACAGACTCACTGCGTTCGTGTCGTATAGGAACCAGCAGATAACGCCGCAGGTGATGCTGCCTCCCCTGTTCCACGAAAAGCGGAGCACAGTGGCGATGTCCCCTGTACTAGGAGGTGGGGCGGTGGCAGTGCCGTTGGAGGTGGGAAATGGGTTGGTCACGGATGAAGCGATTGGAGTTGTGGGGTTGAGAGTTGTGTTGTTGGGGAGACTAAGATGGAAAGCTGGGCCAGTCAAGACTGGGCGTTATGCGGTAATTGTGAAATGTGACGTGTTGGTGGGTCTCAAAAGTGGGGTGGTGGGTCAAGTTCCGTTGCTTGGTTTCCCCGCTTGCCAGGTTGATATTTAG

Coding sequence (CDS)

ATGGCGATGGAGCATTGGGCCATAAAATGGGATGTGAGGGCTACCTTTTGGTACCAACCATTTGAGTTGAGATCCTCTGAAAACCAAGAGCCTAAGTCATTAGTTTTTGGTCAAATTAGAGAGTTATACTCGACCCCTTTGGCTCAAATGAGTCCCTACACACTCAGACAACAATTAGAACCAAACTTGCCCAATAAAGGCCTATACCGTTGGGTTCAAGGGAGGAAGAGGAAGAGTTTTGGTGAAGACATTGAAGAGAAACACGTGTTAAGCAGCAACGGCACGTGGGATCAGACTAAGCTCCCATGTAAACAAAGAGATGAAGCGCAAGAACACGTCCAAAATCCGAAGGATTTGAAAGAAGAAAAGAAGGGAGCAAGACCATGCTACCCAAAAACCACTCGGCGCTCTGTTTTCGCATGCATATCCATCTTCCTCCTCATAATTGGCGTGGTGGCTCTCACTCTCTGGCTTGTGTACCGCCCCACTCACCCTCAATTCAGGGTGGTTGGAGCCGCAATATACGAGCTCAACATCTCATCTCTGCCACTGCTGTCCACAAGGATGCAATTTACAATCCTTACAAGGAACCCCAACAGGCGAGTTGGGATCTATTATGACAGACTCACTGCGTTCGTGTCGTATAGGAACCAGCAGATAACGCCGCAGGTGATGCTGCCTCCCCTGTTCCACGAAAAGCGGAGCACAGTGGCGATGTCCCCTGTACTAGGAGGTGGGGCGGTGGCAGTGCCGTTGGAGGTGGGAAATGGGTTGGTCACGGATGAAGCGATTGGAGTTGTGGGGTTGAGAGTTGTGTTGTTGGGGAGACTAAGATGGAAAGCTGGGCCAGTCAAGACTGGGCGTTATGCGGTAATTGTGAAATGTGACGTGTTGGTGGGTCTCAAAAGTGGGGTGGTGGGTCAAGTTCCGTTGCTTGGTTTCCCCGCTTGCCAGGTTGATATTTAG

Protein sequence

MAMEHWAIKWDVRATFWYQPFELRSSENQEPKSLVFGQIRELYSTPLAQMSPYTLRQQLEPNLPNKGLYRWVQGRKRKSFGEDIEEKHVLSSNGTWDQTKLPCKQRDEAQEHVQNPKDLKEEKKGARPCYPKTTRRSVFACISIFLLIIGVVALTLWLVYRPTHPQFRVVGAAIYELNISSLPLLSTRMQFTILTRNPNRRVGIYYDRLTAFVSYRNQQITPQVMLPPLFHEKRSTVAMSPVLGGGAVAVPLEVGNGLVTDEAIGVVGLRVVLLGRLRWKAGPVKTGRYAVIVKCDVLVGLKSGVVGQVPLLGFPACQVDI

Homology

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BLAST of CmaCh00G005020 vs. Swiss-Prot
Match: NHL12_ARATH (NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana GN=NHL12 PE=2 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 6.8e-24
Identity = 57/163 (34.97%), Postives = 91/163 (55.83%), Query Frame = 1


Query: 145 FLLIIGVVALTLWLVYRPTHPQFRVVGAAIYELNISSLPLLSTRMQFTILTRNPNRRVGI 204
           F++I+ +    +W++ +PT P+F +  A +Y  N+S   LL++  Q TI +RN N R+GI
Sbjct: 28  FIIIVLITIFLVWIILQPTKPRFILQDATVYAFNLSQPNLLTSNFQITIASRNRNSRIGI 87

Query: 205 YYDRLTAFVSYRNQQITPQVMLPPLFHEKRSTVAMSPVLGGGAVAVPLEVGNGLVTDEAI 264
           YYDRL  + +YRNQQIT +  +PP +   +     SP + G +V +       L  ++  
Sbjct: 88  YYDRLHVYATYRNQQITLRTAIPPTYQGHKEDNVWSPFVYGNSVPIAPFNAVALGDEQNR 147

Query: 265 GVVGLRVVLLGRLRWKAGPVKTGRYAVIVKCDVLVGLKSGVVG 308
           G V L +   GR+RWK G + TG+Y + V+C   + L     G
Sbjct: 148 GFVTLIIRADGRVRWKVGTLITGKYHLHVRCQAFINLADKAAG 190

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BLAST of CmaCh00G005020 vs. Swiss-Prot
Match: YLS9_ARATH (Protein YLS9 OS=Arabidopsis thaliana GN=YLS9 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.5e-12
Identity = 50/166 (30.12%), Postives = 84/166 (50.60%), Query Frame = 1


Query: 137 SVFACISIFLLII-GVVALTLWLVYRPTHPQFRVVGAAIYELNISSLP-LLSTRMQFTIL 196
           S+F  + I L++I GV AL  WL+ RP   +F V  A++   + +S   +L   +  T+ 
Sbjct: 39  SLFVKVIISLIVILGVAALIFWLIVRPRAIKFHVTDASLTRFDHTSPDNILRYNLALTVP 98

Query: 197 TRNPNRRVGIYYDRLTAFVSYRNQQITPQVMLPPLFHEKRSTVAMSPVLGGGAVAVPLEV 256
            RNPN+R+G+YYDR+ A   Y  ++ +  + L P +   ++T  ++P   G  + +    
Sbjct: 99  VRNPNKRIGLYYDRIEAHAYYEGKRFS-TITLTPFYQGHKNTTVLTPTFQGQNLVI-FNA 158

Query: 257 GNG--LVTDEAIGVVGLRVVLLGRLRWKAGPVKTGRYAVIVKCDVL 299
           G    L  +   GV  + +    R+R+K G +K  R    V CD L
Sbjct: 159 GQSRTLNAERISGVYNIEIKFRLRVRFKLGDLKFRRIKPKVDCDDL 202

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BLAST of CmaCh00G005020 vs. Swiss-Prot
Match: NHL3_ARATH (NDR1/HIN1-Like protein 3 OS=Arabidopsis thaliana GN=NHL3 PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 6.6e-11
Identity = 44/167 (26.35%), Postives = 79/167 (47.31%), Query Frame = 1


Query: 138 VFACISIFLLIIGVVALTLWLVYRPTHPQFRVVGAAIYELNISSLPLLSTRMQFTILTRN 197
           +F  +    +++G+ AL +WL++RP   +F V  A + E  +     L   +      RN
Sbjct: 48  IFNILITIAVLLGIAALIIWLIFRPNAIKFHVTDAKLTEFTLDPTNNLRYNLDLNFTIRN 107

Query: 198 PNRRVGIYYDRLTAFVSYRNQQITPQVMLPPLFH-EKRSTVAMSPVLGGGAVAVPLEVGN 257
           PNRR+G+YYD +     Y +Q+      +   +   K +TV  + ++G   V +      
Sbjct: 108 PNRRIGVYYDEIEVRGYYGDQRFGMSNNISKFYQGHKNTTVVGTKLVGQQLVLLDGGERK 167

Query: 258 GLVTDEAIGVVGLRVVLLGRLRWKAGPVKTGRYAVIVKCDVLVGLKS 304
            L  D    +  +   L  ++R+K G +K+ R+   +KCD+ V L S
Sbjct: 168 DLNEDVNSQIYRIDAKLRLKIRFKFGLIKSWRFKPKIKCDLKVPLTS 214

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BLAST of CmaCh00G005020 vs. TrEMBL
Match: A0A0A0L882_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116630 PE=4 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 1.1e-86
Identity = 172/220 (78.18%), Postives = 189/220 (85.91%), Query Frame = 1


Query: 105 QRDEAQEHVQNPKDLKEEKKGAR---PCYPKTTRRSVFACISIFLLIIGVVALTLWLVYR 164
           +R+E Q  V + KDLKEEK  AR     Y K TRRSV ACISIFLL+IGVVALTLWLVYR
Sbjct: 3   ERNEEQGDVHDQKDLKEEKNRARFSSRYYSKRTRRSVCACISIFLLVIGVVALTLWLVYR 62

Query: 165 PTHPQFRVVGAAIYELNISSLPLLSTRMQFTILTRNPNRRVGIYYDRLTAFVSYRNQQIT 224
           P  PQF VVGAAIY+LN+SSLPLLST MQFTI+TRNPNRRV IYYDRLT FVSYRNQQIT
Sbjct: 63  PIDPQFTVVGAAIYDLNMSSLPLLSTTMQFTIVTRNPNRRVSIYYDRLTVFVSYRNQQIT 122

Query: 225 PQVMLPPLFHEKRSTVAMSPVLGGGAVAVPLEVGNGLVTDEAIGVVGLRVVLLGRLRWKA 284
            QV+LPPL HEKRSTVAMSPVLGGGAVAV LEV NGLVTD+ IGV+GLRVVLLGRLRWKA
Sbjct: 123 SQVILPPLAHEKRSTVAMSPVLGGGAVAVSLEVANGLVTDQTIGVLGLRVVLLGRLRWKA 182

Query: 285 GPVKTGRYAVIVKCDVLVGLKSGVVGQVPLLGFPACQVDI 322
           GP+KTGRY+V VKCDVLVG+K G+VGQ+P+L  P C+VDI
Sbjct: 183 GPLKTGRYSVYVKCDVLVGVKRGLVGQLPMLASPPCKVDI 222

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BLAST of CmaCh00G005020 vs. TrEMBL
Match: M5X269_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011309mg PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 1.4e-71
Identity = 144/214 (67.29%), Postives = 165/214 (77.10%), Query Frame = 1


Query: 108 EAQEHVQNPKDLKEEKKGARPCYPKTTRRSVFACISIFLLIIGVVALTLWLVYRPTHPQF 167
           E ++H +NP   K+    + P Y     RS+  C+SIFLL+ GV ALTLWLVYRP  PQF
Sbjct: 3   EEEDHKKNPTT-KKRYMASSPIYTSGPYRSICTCLSIFLLLAGVTALTLWLVYRPHKPQF 62

Query: 168 RVVGAAIYELNISSLPLLSTRMQFTILTRNPNRRVGIYYDRLTAFVSYRNQQITPQVMLP 227
            VVGAA+Y+LN +S PL+ST MQFT++T NPNRRV IYYDRL AFVSY+NQ ITPQV LP
Sbjct: 63  TVVGAAVYDLNATSPPLISTTMQFTLVTHNPNRRVSIYYDRLYAFVSYKNQAITPQVALP 122

Query: 228 PLFHEKRSTVAMSPVLGGGAVAVPLEVGNGLVTDEAIGVVGLRVVLLGRLRWKAGPVKTG 287
            L HE RSTVA+SPVLGG AV V LEV NGL  DEA GVVGLRVV++GRLRWKAG ++T 
Sbjct: 123 SLVHEHRSTVAVSPVLGGRAVPVSLEVVNGLTMDEAYGVVGLRVVVMGRLRWKAGAIRTA 182

Query: 288 RYAVIVKCDVLVGLKSGVVGQVPLLGFPACQVDI 322
            Y V VKCDVLVGLK G VGQVPLLG P+CQVDI
Sbjct: 183 HYGVYVKCDVLVGLKRGFVGQVPLLGNPSCQVDI 215

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BLAST of CmaCh00G005020 vs. TrEMBL
Match: F6I2Y6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0048g02530 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 3.4e-67
Identity = 134/199 (67.34%), Postives = 153/199 (76.88%), Query Frame = 1


Query: 123 KKGARPCYPKTTRRSVFACISIFLLIIGVVALTLWLVYRPTHPQFRVVGAAIYELNISSL 182
           +K   P  PK  RR+    I I LL+ G+ AL +WLVYRP  PQF V+G AIY+LN +S 
Sbjct: 4   EKPPSPYRPKDPRRACCTFIFILLLLAGITALVVWLVYRPQEPQFTVMGVAIYDLNTTSP 63

Query: 183 PLLSTRMQFTILTRNPNRRVGIYYDRLTAFVSYRNQQITPQVMLPPLFHEKRSTVAMSPV 242
           PL+ST MQFTI+TRNPN+RV IYYDRL+AFVSYRNQ ITP  MLPPL+H K STVA+SPV
Sbjct: 64  PLISTNMQFTIVTRNPNKRVSIYYDRLSAFVSYRNQAITPPAMLPPLYHRKHSTVALSPV 123

Query: 243 LGGGAVAVPLEVGNGLVTDEAIGVVGLRVVLLGRLRWKAGPVKTGRYAVIVKCDVLVGLK 302
           LGG AV V LEV NGLV DEA GV+GLR+VLLGRL+WKAG   +  Y V VKCDVLVGLK
Sbjct: 124 LGGEAVPVSLEVANGLVMDEAYGVMGLRLVLLGRLKWKAGAFWSMHYGVYVKCDVLVGLK 183

Query: 303 SGVVGQVPLLGFPACQVDI 322
            GVVGQVP+LG P C VDI
Sbjct: 184 KGVVGQVPMLGSPLCNVDI 202

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BLAST of CmaCh00G005020 vs. TrEMBL
Match: A5BJJ5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027904 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 4.5e-67
Identity = 139/224 (62.05%), Postives = 160/224 (71.43%), Query Frame = 1


Query: 101 LPCKQRDEAQEHVQNPKDLKEE---KKGARPCYPKTTRRSVFACISIFLLIIGVVALTLW 160
           LP        E  Q  +  + E   +K   P  PK  RR+    I I LL+ G+ AL +W
Sbjct: 768 LPASVEHTTAEETQTTQTTQTEMGVEKPPSPYRPKDPRRACCTFIFILLLLAGITALVVW 827

Query: 161 LVYRPTHPQFRVVGAAIYELNISSLPLLSTRMQFTILTRNPNRRVGIYYDRLTAFVSYRN 220
           LVYRP  PQF V+G AIY+LN +S PL+ST MQFTI+TRNPN+RV IYYDRL+AFVSYRN
Sbjct: 828 LVYRPQEPQFTVMGVAIYDLNTTSPPLISTNMQFTIVTRNPNKRVSIYYDRLSAFVSYRN 887

Query: 221 QQITPQVMLPPLFHEKRSTVAMSPVLGGGAVAVPLEVGNGLVTDEAIGVVGLRVVLLGRL 280
           Q ITP  MLPPL+H K STVA+SPVLGG AV V LEV NGLV DEA GV+GLR+VLLGRL
Sbjct: 888 QAITPPAMLPPLYHRKHSTVALSPVLGGEAVPVSLEVANGLVMDEAYGVMGLRLVLLGRL 947

Query: 281 RWKAGPVKTGRYAVIVKCDVLVGLKSGVVGQVPLLGFPACQVDI 322
           +WKAG   +  Y V VKCDVLVGLK GVVGQVP+LG P C VDI
Sbjct: 948 KWKAGAFWSMHYGVYVKCDVLVGLKKGVVGQVPMLGSPXCNVDI 991

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BLAST of CmaCh00G005020 vs. TrEMBL
Match: B9RNK9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1339920 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 6.5e-66
Identity = 129/224 (57.59%), Postives = 166/224 (74.11%), Query Frame = 1


Query: 98  QTKLPCKQRDEAQEHVQNPKDLKEEKKGARPCYPKTTRRSVFACISIFLLIIGVVALTLW 157
           Q+++  ++  + Q+H+  P           P Y    RR++   I+IFLL+ G+    +W
Sbjct: 14  QSQVTDEKHHQPQKHMSPP-----------PSYKSDPRRTICTVITIFLLLAGLAVFIVW 73

Query: 158 LVYRPTHPQFRVVGAAIYELNISSLPLLSTRMQFTILTRNPNRRVGIYYDRLTAFVSYRN 217
           L+YRP  P+F V+GAAIY+LN +S P +S  MQFTI+TRNPN+RV I YD+L+A+VSYRN
Sbjct: 74  LIYRPHKPRFTVLGAAIYDLNTTSPPFVSASMQFTIVTRNPNKRVAIIYDKLSAYVSYRN 133

Query: 218 QQITPQVMLPPLFHEKRSTVAMSPVLGGGAVAVPLEVGNGLVTDEAIGVVGLRVVLLGRL 277
           Q ITP V+LPPL+H+K+STVA+SPVLGG  V V +EV NGLV DE+ GVV LRVVLLGRL
Sbjct: 134 QAITPTVVLPPLYHDKKSTVALSPVLGGAQVPVSVEVANGLVMDESYGVVALRVVLLGRL 193

Query: 278 RWKAGPVKTGRYAVIVKCDVLVGLKSGVVGQVPLLGFPACQVDI 322
           RWKAG +KTGRY V VKCD+ VGLK G+VGQVPLLG P C+VD+
Sbjct: 194 RWKAGVIKTGRYGVYVKCDIWVGLKRGLVGQVPLLGSPQCKVDV 226

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BLAST of CmaCh00G005020 vs. TAIR10
Match: AT4G01410.1 (AT4G01410.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 203.4 bits (516), Expect = 2.1e-52
Identity = 100/187 (53.48%), Postives = 134/187 (71.66%), Query Frame = 1


Query: 135 RRSVFACISIFLLIIGVVALTLWLVYRPTHPQFRVVGAAIYELNISSLPLLSTRMQFTIL 194
           RR++   I   L+I+G++AL LWLVYRP  P+  VVGAAIY+LN ++ PL+ST +QF++L
Sbjct: 41  RRAICGAIFTILVILGIIALILWLVYRPHKPRLTVVGAAIYDLNFTAPPLISTSVQFSVL 100

Query: 195 TRNPNRRVGIYYDRLTAFVSYRNQQITPQVMLPPLFHEKRSTVAMSPVLGGGAVAVPLEV 254
            RNPNRRV I+YD+L+ +V+Y++Q ITP + LPPL    +STV ++PV+GG  + V  EV
Sbjct: 101 ARNPNRRVSIHYDKLSMYVTYKDQIITPPLPLPPLRLGHKSTVVIAPVMGGNGIPVSPEV 160

Query: 255 GNGLVTDEAIGVVGLRVVLLGRLRWKAGPVKTGRYAVIVKCDVLVGLKSGVVGQVPLLGF 314
            NGL  DEA GVV +RVV+ GRLRWKAG +KTGRY    +CDV +       GQVPLL  
Sbjct: 161 ANGLKNDEAYGVVLMRVVIFGRLRWKAGAIKTGRYGFYARCDVWLRFNPSSNGQVPLLAP 220

Query: 315 PACQVDI 322
             C+VD+
Sbjct: 221 STCKVDV 227

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BLAST of CmaCh00G005020 vs. TAIR10
Match: AT5G06330.1 (AT5G06330.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 120.2 bits (300), Expect = 2.4e-27
Identity = 73/188 (38.83%), Postives = 105/188 (55.85%), Query Frame = 1


Query: 125 GARPCYPKTTRRSVFACISIFLLIIGVVALTLWLVYRPTHPQFRVVGAAIYELNISSLP- 184
           G+   +    R+ V   ISI LL+I VV L +W + +P+ P+F +  A ++  N+S  P 
Sbjct: 7   GSHDSHSSCNRKIVIWTISIILLLILVVILLVWAILQPSKPRFVLQDATVFNFNVSGNPP 66

Query: 185 -LLSTRMQFTILTRNPNRRVGIYYDRLTAFVSYRNQQIT-PQVMLPPLFHEKRSTVAMSP 244
            LL++  QFT+ +RNPN ++GIYYDRL  + SYR+QQIT P  ML      K   V  SP
Sbjct: 67  NLLTSNFQFTLSSRNPNDKIGIYYDRLDVYASYRSQQITLPSPMLTTYQGHKEVNV-WSP 126

Query: 245 VLGGGAVAVPLEVGNGLVTDEAIGVVGLRVVLLGRLRWKAGPVKTGRYAVIVKCDVLVGL 304
            +GG +V V       L  D + G + L + L GR+RWK G   TG+Y + V+C  L+  
Sbjct: 127 FVGGYSVPVAPYNAFYLDQDHSSGAIMLMLHLDGRVRWKVGSFITGKYHLHVRCHALINF 186

Query: 305 KSGVVGQV 310
            S   G +
Sbjct: 187 GSSAAGVI 193

[Close]

BLAST of CmaCh00G005020 vs. TAIR10
Match: AT3G52470.1 (AT3G52470.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 116.3 bits (290), Expect = 3.4e-26
Identity = 60/172 (34.88%), Postives = 95/172 (55.23%), Query Frame = 1


Query: 136 RSVFACISIFLLIIGVVALTLWLVYRPTHPQFRVVGAAIYELNISSLPLLSTRMQFTILT 195
           R + A I  F++I+ +    +W++ RPT P+F +  A +Y  N+S   LL++  Q TI +
Sbjct: 17  RKLCAAIIAFIVIVLITIFLVWVILRPTKPRFVLQDATVYAFNLSQPNLLTSNFQVTIAS 76

Query: 196 RNPNRRVGIYYDRLTAFVSYRNQQITPQVMLPPLFHEKRSTVAMSPVLGGGAVAVPLEVG 255
           RNPN ++GIYYDRL  + +Y NQQIT +  +PP +   +     SP + G AV +     
Sbjct: 77  RNPNSKIGIYYDRLHVYATYMNQQITLRTAIPPTYQGHKEVNVWSPFVYGTAVPIAPYNS 136

Query: 256 NGLVTDEAIGVVGLRVVLLGRLRWKAGPVKTGRYAVIVKCDVLVGLKSGVVG 308
             L  ++  G VGL +   G +RWK   + TG+Y + V+C   + L +   G
Sbjct: 137 VALGEEKDRGFVGLMIRADGTVRWKVRTLITGKYHIHVRCQAFINLGNKAAG 188

[Close]

BLAST of CmaCh00G005020 vs. TAIR10
Match: AT3G11660.1 (AT3G11660.1 NDR1/HIN1-like 1)

HSP 1 Score: 114.4 bits (285), Expect = 1.3e-25
Identity = 64/176 (36.36%), Postives = 97/176 (55.11%), Query Frame = 1


Query: 136 RSVFACISIFLLIIGVVALTLWLVYRPTHPQFRVVGAAIYELNISSLP--LLSTRMQFTI 195
           R +F  I   L II +  L +W + +P+ P+F +  A +Y  N+S  P  LL++  Q T+
Sbjct: 16  RRIFWSIIFVLFIIFLTILLIWAILQPSKPRFILQDATVYAFNVSGNPPNLLTSNFQITL 75

Query: 196 LTRNPNRRVGIYYDRLTAFVSYRNQQITPQVMLPPLFHEKRSTVAMSPVLGGGAVAVPLE 255
            +RNPN ++GIYYDRL  + +YR+QQIT    +PP +   +     SP + G +V +   
Sbjct: 76  SSRNPNNKIGIYYDRLDVYATYRSQQITFPTSIPPTYQGHKDVDIWSPFVYGTSVPIAPF 135

Query: 256 VGNGLVTDEAIGVVGLRVVLLGRLRWKAGPVKTGRYAVIVKCDVLVGLKSGVVGQV 310
            G  L TD+  GVV L +   GR+RWK G   TG+Y + VKC   +   +   G +
Sbjct: 136 NGVSLDTDKDNGVVLLIIRADGRVRWKVGTFITGKYHLHVKCPAYINFGNKANGVI 191

[Close]

BLAST of CmaCh00G005020 vs. TAIR10
Match: AT2G35960.1 (AT2G35960.1 NDR1/HIN1-like 12)

HSP 1 Score: 112.8 bits (281), Expect = 3.8e-25
Identity = 57/163 (34.97%), Postives = 91/163 (55.83%), Query Frame = 1


Query: 145 FLLIIGVVALTLWLVYRPTHPQFRVVGAAIYELNISSLPLLSTRMQFTILTRNPNRRVGI 204
           F++I+ +    +W++ +PT P+F +  A +Y  N+S   LL++  Q TI +RN N R+GI
Sbjct: 28  FIIIVLITIFLVWIILQPTKPRFILQDATVYAFNLSQPNLLTSNFQITIASRNRNSRIGI 87

Query: 205 YYDRLTAFVSYRNQQITPQVMLPPLFHEKRSTVAMSPVLGGGAVAVPLEVGNGLVTDEAI 264
           YYDRL  + +YRNQQIT +  +PP +   +     SP + G +V +       L  ++  
Sbjct: 88  YYDRLHVYATYRNQQITLRTAIPPTYQGHKEDNVWSPFVYGNSVPIAPFNAVALGDEQNR 147

Query: 265 GVVGLRVVLLGRLRWKAGPVKTGRYAVIVKCDVLVGLKSGVVG 308
           G V L +   GR+RWK G + TG+Y + V+C   + L     G
Sbjct: 148 GFVTLIIRADGRVRWKVGTLITGKYHLHVRCQAFINLADKAAG 190

[Close]

BLAST of CmaCh00G005020 vs. NCBI nr
Match: gi|659074695|ref|XP_008437747.1| (PREDICTED: protein YLS9-like [Cucumis melo])

HSP 1 Score: 331.3 bits (848), Expect = 1.9e-87
Identity = 173/220 (78.64%), Postives = 191/220 (86.82%), Query Frame = 1


Query: 105 QRDEAQEHVQNPKDLKEEKKGAR---PCYPKTTRRSVFACISIFLLIIGVVALTLWLVYR 164
           +R+E Q+ V N +DLKEEK  AR     Y K+TRRSV ACISIFLLIIGVVALTLWLVYR
Sbjct: 3   ERNEEQDDVHNKRDLKEEKNRARFSHRYYSKSTRRSVCACISIFLLIIGVVALTLWLVYR 62

Query: 165 PTHPQFRVVGAAIYELNISSLPLLSTRMQFTILTRNPNRRVGIYYDRLTAFVSYRNQQIT 224
           P  PQF VVGAAIY+LN+SSLPLLST MQFTI+TRNPNRRV IYYDRLT FVSYRNQQIT
Sbjct: 63  PIDPQFTVVGAAIYDLNMSSLPLLSTTMQFTIVTRNPNRRVSIYYDRLTIFVSYRNQQIT 122

Query: 225 PQVMLPPLFHEKRSTVAMSPVLGGGAVAVPLEVGNGLVTDEAIGVVGLRVVLLGRLRWKA 284
            QV+LPPL HEKRSTVAMSPVLGGGAVAV LEV NGLVTD+ IGV+GLRVVLLGRLRWKA
Sbjct: 123 SQVILPPLAHEKRSTVAMSPVLGGGAVAVSLEVANGLVTDQTIGVLGLRVVLLGRLRWKA 182

Query: 285 GPVKTGRYAVIVKCDVLVGLKSGVVGQVPLLGFPACQVDI 322
           GP+KTGRYAV VKCDVL+G+K G+VGQ+P+L  P C+VDI
Sbjct: 183 GPLKTGRYAVYVKCDVLMGVKRGLVGQLPMLASPPCKVDI 222

[Close]

BLAST of CmaCh00G005020 vs. NCBI nr
Match: gi|449431934|ref|XP_004133755.1| (PREDICTED: protein YLS9-like [Cucumis sativus])

HSP 1 Score: 328.2 bits (840), Expect = 1.6e-86
Identity = 172/220 (78.18%), Postives = 189/220 (85.91%), Query Frame = 1


Query: 105 QRDEAQEHVQNPKDLKEEKKGAR---PCYPKTTRRSVFACISIFLLIIGVVALTLWLVYR 164
           +R+E Q  V + KDLKEEK  AR     Y K TRRSV ACISIFLL+IGVVALTLWLVYR
Sbjct: 3   ERNEEQGDVHDQKDLKEEKNRARFSSRYYSKRTRRSVCACISIFLLVIGVVALTLWLVYR 62

Query: 165 PTHPQFRVVGAAIYELNISSLPLLSTRMQFTILTRNPNRRVGIYYDRLTAFVSYRNQQIT 224
           P  PQF VVGAAIY+LN+SSLPLLST MQFTI+TRNPNRRV IYYDRLT FVSYRNQQIT
Sbjct: 63  PIDPQFTVVGAAIYDLNMSSLPLLSTTMQFTIVTRNPNRRVSIYYDRLTVFVSYRNQQIT 122

Query: 225 PQVMLPPLFHEKRSTVAMSPVLGGGAVAVPLEVGNGLVTDEAIGVVGLRVVLLGRLRWKA 284
            QV+LPPL HEKRSTVAMSPVLGGGAVAV LEV NGLVTD+ IGV+GLRVVLLGRLRWKA
Sbjct: 123 SQVILPPLAHEKRSTVAMSPVLGGGAVAVSLEVANGLVTDQTIGVLGLRVVLLGRLRWKA 182

Query: 285 GPVKTGRYAVIVKCDVLVGLKSGVVGQVPLLGFPACQVDI 322
           GP+KTGRY+V VKCDVLVG+K G+VGQ+P+L  P C+VDI
Sbjct: 183 GPLKTGRYSVYVKCDVLVGVKRGLVGQLPMLASPPCKVDI 222

[Close]

BLAST of CmaCh00G005020 vs. NCBI nr
Match: gi|645284125|ref|XP_008245646.1| (PREDICTED: protein YLS9 [Prunus mume])

HSP 1 Score: 281.6 bits (719), Expect = 1.8e-72
Identity = 147/225 (65.33%), Postives = 170/225 (75.56%), Query Frame = 1


Query: 97  DQTKLPCKQRDEAQEHVQNPKDLKEEKKGARPCYPKTTRRSVFACISIFLLIIGVVALTL 156
           D+T     +  E ++H +NP   K+    + P YP    RS+  C+SIFLL+ GV ALTL
Sbjct: 8   DKTHHHLPKMTEEEDHKKNPTT-KKRYMASSPIYPSGPYRSICTCLSIFLLLAGVTALTL 67

Query: 157 WLVYRPTHPQFRVVGAAIYELNISSLPLLSTRMQFTILTRNPNRRVGIYYDRLTAFVSYR 216
           WLVYRP  PQF VVGAA+Y+LN +S PL+ST MQFT++T NPNRRV IYYDRL AFVSY+
Sbjct: 68  WLVYRPHKPQFTVVGAAVYDLNATSPPLISTTMQFTLVTHNPNRRVSIYYDRLYAFVSYK 127

Query: 217 NQQITPQVMLPPLFHEKRSTVAMSPVLGGGAVAVPLEVGNGLVTDEAIGVVGLRVVLLGR 276
           NQ ITPQV LP L HE RSTVA+SPVLGG AV V LEV NGL  DEA GVVGLRVV++GR
Sbjct: 128 NQAITPQVALPSLVHEHRSTVAVSPVLGGRAVPVSLEVVNGLTMDEAYGVVGLRVVVMGR 187

Query: 277 LRWKAGPVKTGRYAVIVKCDVLVGLKSGVVGQVPLLGFPACQVDI 322
           LRWKAG ++T  Y V VKCDVLVGLK G VGQVPLLG P+CQVDI
Sbjct: 188 LRWKAGAIRTAHYGVYVKCDVLVGLKRGFVGQVPLLGNPSCQVDI 231

[Close]

BLAST of CmaCh00G005020 vs. NCBI nr
Match: gi|694380987|ref|XP_009366593.1| (PREDICTED: protein YLS9 [Pyrus x bretschneideri])

HSP 1 Score: 278.1 bits (710), Expect = 1.9e-71
Identity = 137/191 (71.73%), Postives = 157/191 (82.20%), Query Frame = 1


Query: 131 PKTTRRSVFACISIFLLIIGVVALTLWLVYRPTHPQFRVVGAAIYELNISSLPLLSTRMQ 190
           P    R++  C+SIFLL+ GV ALTLWLVYRP  PQF +VGAA+Y LN++S PL+ST MQ
Sbjct: 23  PSVPYRALCTCLSIFLLLAGVTALTLWLVYRPHKPQFTIVGAAVYSLNVTSPPLISTTMQ 82

Query: 191 FTILTRNPNRRVGIYYDRLTAFVSYRNQQITPQVMLPPLFHEKRSTVAMSPVLGGGAVAV 250
           FTI+TRNPNRRV IYYDRL+AFV+Y+NQ ITPQV LPPL HE RSTVA+SPVLGGG V V
Sbjct: 83  FTIVTRNPNRRVSIYYDRLSAFVAYKNQAITPQVTLPPLVHEHRSTVAVSPVLGGGEVPV 142

Query: 251 PLEVGNGLVTDEAIGVVGLRVVLLGRLRWKAGPVKTGRYAVIVKCDVLVGLKSGVVGQVP 310
            +EV NGLV DE  GVVGLRVV+ GRLRWKAG ++TG Y + VKCDVLVGLK G VGQVP
Sbjct: 143 AVEVVNGLVMDEVYGVVGLRVVVTGRLRWKAGAIRTGHYGIYVKCDVLVGLKKGFVGQVP 202

Query: 311 LLGFPACQVDI 322
           LLG PAC+VDI
Sbjct: 203 LLGNPACKVDI 213

[Close]

BLAST of CmaCh00G005020 vs. NCBI nr
Match: gi|596005536|ref|XP_007218377.1| (hypothetical protein PRUPE_ppa011309mg [Prunus persica])

HSP 1 Score: 278.1 bits (710), Expect = 1.9e-71
Identity = 144/214 (67.29%), Postives = 165/214 (77.10%), Query Frame = 1


Query: 108 EAQEHVQNPKDLKEEKKGARPCYPKTTRRSVFACISIFLLIIGVVALTLWLVYRPTHPQF 167
           E ++H +NP   K+    + P Y     RS+  C+SIFLL+ GV ALTLWLVYRP  PQF
Sbjct: 3   EEEDHKKNPTT-KKRYMASSPIYTSGPYRSICTCLSIFLLLAGVTALTLWLVYRPHKPQF 62

Query: 168 RVVGAAIYELNISSLPLLSTRMQFTILTRNPNRRVGIYYDRLTAFVSYRNQQITPQVMLP 227
            VVGAA+Y+LN +S PL+ST MQFT++T NPNRRV IYYDRL AFVSY+NQ ITPQV LP
Sbjct: 63  TVVGAAVYDLNATSPPLISTTMQFTLVTHNPNRRVSIYYDRLYAFVSYKNQAITPQVALP 122

Query: 228 PLFHEKRSTVAMSPVLGGGAVAVPLEVGNGLVTDEAIGVVGLRVVLLGRLRWKAGPVKTG 287
            L HE RSTVA+SPVLGG AV V LEV NGL  DEA GVVGLRVV++GRLRWKAG ++T 
Sbjct: 123 SLVHEHRSTVAVSPVLGGRAVPVSLEVVNGLTMDEAYGVVGLRVVVMGRLRWKAGAIRTA 182

Query: 288 RYAVIVKCDVLVGLKSGVVGQVPLLGFPACQVDI 322
            Y V VKCDVLVGLK G VGQVPLLG P+CQVDI
Sbjct: 183 HYGVYVKCDVLVGLKRGFVGQVPLLGNPSCQVDI 215

The following BLAST results are available for this feature:

BLAST of CmaCh00G005020 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NHL12_ARATH	6.8e-24	34.97	NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana GN=NHL12 PE=2 SV=1	[more]
YLS9_ARATH	3.5e-12	30.12	Protein YLS9 OS=Arabidopsis thaliana GN=YLS9 PE=2 SV=1	[more]
NHL3_ARATH	6.6e-11	26.35	NDR1/HIN1-Like protein 3 OS=Arabidopsis thaliana GN=NHL3 PE=1 SV=1	[more]

BLAST of CmaCh00G005020 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L882_CUCSA	1.1e-86	78.18	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116630 PE=4 SV=1	[more]
M5X269_PRUPE	1.4e-71	67.29	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011309mg PE=4 SV=1	[more]
F6I2Y6_VITVI	3.4e-67	67.34	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0048g02530 PE=4 SV=...	[more]
A5BJJ5_VITVI	4.5e-67	62.05	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027904 PE=4 SV=1	[more]
B9RNK9_RICCO	6.5e-66	57.59	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1339920 PE=4 SV=1	[more]

BLAST of CmaCh00G005020 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G01410.1	2.1e-52	53.48	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT5G06330.1	2.4e-27	38.83	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT3G52470.1	3.4e-26	34.88	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT3G11660.1	1.3e-25	36.36	NDR1/HIN1-like 1	[more]
AT2G35960.1	3.8e-25	34.97	NDR1/HIN1-like 12	[more]

BLAST of CmaCh00G005020 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659074695\|ref\|XP_008437747.1\|	1.9e-87	78.64	PREDICTED: protein YLS9-like [Cucumis melo]	[more]
gi\|449431934\|ref\|XP_004133755.1\|	1.6e-86	78.18	PREDICTED: protein YLS9-like [Cucumis sativus]	[more]
gi\|645284125\|ref\|XP_008245646.1\|	1.8e-72	65.33	PREDICTED: protein YLS9 [Prunus mume]	[more]
gi\|694380987\|ref\|XP_009366593.1\|	1.9e-71	71.73	PREDICTED: protein YLS9 [Pyrus x bretschneideri]	[more]
gi\|596005536\|ref\|XP_007218377.1\|	1.9e-71	67.29	hypothetical protein PRUPE_ppa011309mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004864	LEA_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0000160	phosphorelay signal transduction system
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0005622	intracellular
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G005020.1	CmaCh00G005020.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA-14	PFAM	PF03168	LEA_2	coord: 193..295 score: 2.
None	No IPR available	PANTHER	PTHR31415	FAMILY NOT NAMED	coord: 130..321 score: 2.0E
None	No IPR available	PANTHER	PTHR31415:SF9	SUBFAMILY NOT NAMED	coord: 130..321 score: 2.0E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh00G005020	Cucsa.260120	Cucumber (Gy14) v1	cgycmaB0707
CmaCh00G005020	Csa3G116630	Cucumber (Chinese Long) v2	cmacuB004
CmaCh00G005020	CSPI03G06980	Wild cucumber (PI 183967)	cmacpiB004
CmaCh00G005020	CmoCh06G009520	Cucurbita moschata (Rifu)	cmacmoB017
CmaCh00G005020	Cp4.1LG08g00120	Cucurbita pepo (Zucchini)	cmacpeB023
CmaCh00G005020	Cla97C05G079920	Watermelon (97103) v2	cmawmbB007
CmaCh00G005020	CsGy3G007130	Cucumber (Gy14) v2	cgybcmaB280

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh00G005020	Melon (DHL92) v3.6.1	cmamedB002
CmaCh00G005020	Silver-seed gourd	carcmaB0323
CmaCh00G005020	Cucumber (Chinese Long) v3	cmacucB0002
CmaCh00G005020	Watermelon (97103) v2	cmawmbB002
CmaCh00G005020	Cucurbita maxima (Rimu)	cmacmaB003
CmaCh00G005020	Cucurbita maxima (Rimu)	cmacmaB015
CmaCh00G005020	Cucurbita maxima (Rimu)	cmacmaB027
CmaCh00G005020	Cucurbita moschata (Rifu)	cmacmoB012
CmaCh00G005020	Cucumber (Gy14) v2	cgybcmaB275