CsaV3_3G007080 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G007080
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	NDR1/HIN1-like protein 12
Location	chr3 : 6378881 .. 6381023 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAAAGAAACGAAGAGCAGGGCGATGTCCATGATCAGAAGGATTTGAAAGAAGAAAAGAACAGAGCAAGATTCTCATCCCGATACTACTCAAAAAGAACTCGCCGCTCTGTTTGCGCATGCATCTCCATCTTCCTCCTCGTAATTGGTGTCGTGGCTCTCACTCTGTGGCTTGTCTACCGCCCCATTGACCCTCAATTCACCGTGGTTGGAGCCGCAATATATGACCTCAACATGTCATCTCTTCCGCTGCTGTCTACAACCATGCAATTCACAATCGTTACGAGGAACCCCAACAGGCGAGTTTCCATTTATTACGACAGACTGACTGTCTTTGTGTCGTATAGGAACCAGCAGATAACGTCGCAGGTGATATTGCCTCCGCTGGCTCACGAAAAGCGGAGCACAGTTGCGATGTCTCCAGTACTAGGCGGTGGGGCGGTGGCAGTGTCGTTGGAGGTGGCAAATGGGTTGGTAACGGATCAAACAATTGGAGTTTTAGGGTTGAGAGTAGTGTTGTTGGGTAGACTAAGATGGAAAGCTGGGCCACTAAAGACTGGACGTTATTCAGTATATGTAAAATGTGATGTGTTGGTGGGTGTGAAAAGAGGCTTGGTGGGTCAACTTCCCATGCTTGCCTCTCCCCCTTGCAAAGTTGATATCTAGTTTTTCATTATTGATTACCAATAATTGCTTACGCTATCTTCTCCCAAATGTTAATGTAAATATCAAATTAAATTTCTAAGATTAAGTTTTTGGGTCTGGTTAAAGAATTCATGTGTTCAAATCCCTGACAATCTCCTTGTCTTAATGAGAGGATAGAGTATGTGTTTGAAGCGTGTAACTAAAGTGGCGACAATTGAAAGGGGCCCTTGAAAAGATTGTCTTTGAAAGAATTACACAGACAACCCAACCCACCCAGCAGCCACTGCACTGCGCTGCCTTGTTAAGGAGGAAAGTATACAGCAGTCCCTTGCATGTGACTTCCTTTTTTAATTGATTTATTCATTGCCATTAACTTAAATTAGCTACCTTAAACTTCACTTCCATTGTTCCAATTATTTCACCCATACTTCCTAATTTGGAATTTCTCAGCTCCAATTTTCATAATCTACTGAGATAGTTCACAAATATAACCTCAAAATTCAAAATATTAATATAACTGCGAGAGTGTTATTAGGATCCCTCACCCAACAATAGGCAAAAGTAATTAACTAAATTGACTAATTAATATGGTCATATAATGGGTTACTAAGCAATACTGGCTACATGTGGATTATTTTATGTACGTAAAAAGACAAAATTTGTGTCCCGACACATTTAATGCTAAATCAAGACCATTGCCAGTAGGTATAGCCTCCTTCCAAATATTCATTCCAATTATTATACATCGCCCTTTCCCACCTTTGTACTGCCAATATAATGCTTGTCTAATGGATAAAAGAAATATGAATGTGTGAACTCTATTTTACACGGCTCTATCATCTTCCCCTATATTCTTTTCCTATTTCTCTCAATACATCAATTATTTAAACACTTCTTCAGACATTGCAAAATCTAACGTGGATGAGTTCGTTGTTCTTTTTCAAAGAGTGAGATGATTAAAAAAGTCGGTATGTGGAAGGTTGGGTAATATATCAAACAAAAAGTTTTCATGAAGGAAACAAAAAAAAATTATCCTCCAAACCTAGCAAATCTATTGGGTCAATGGCCAAAATTGTCCCAAGGTTTTGCCATTGTGGATTTGATTAATGTCTTAATATTAATTTTCATAAATTCCTTGGCAAAAGAGAAATATAATCGCCAATTGACTGCGAGTTAGACCTCAAACTTTCATCTTTATATTCTTGAAGGTCTACTTATTAGTCACTCTAAAGAGCCTCTTTCTTCATGTTTTTAGTGAAAAATATGATATATACCAAAATATTTTTGACTAAAAGAAATCATTGTAAATATAACAATTAGATTTAAAATATTAGCAATAAATAACTATAGAAGTCTCATTTTGTAAGCATTGGTCTTTAAACTACGAGAGTCCAAATTATATTTGTAATTTTTAAAAATGCTATTATTTAACTAGCTTAGAAGAAAATGTGTAATGGAATTTGTGATCCGAAAAGATAAGGGAACCCAAATGTGA

mRNA sequence

ATGGCAGAAAGAAACGAAGAGCAGGGCGATGTCCATGATCAGAAGGATTTGAAAGAAGAAAAGAACAGAGCAAGATTCTCATCCCGATACTACTCAAAAAGAACTCGCCGCTCTGTTTGCGCATGCATCTCCATCTTCCTCCTCGTAATTGGTGTCGTGGCTCTCACTCTGTGGCTTGTCTACCGCCCCATTGACCCTCAATTCACCGTGGTTGGAGCCGCAATATATGACCTCAACATGTCATCTCTTCCGCTGCTGTCTACAACCATGCAATTCACAATCGTTACGAGGAACCCCAACAGGCGAGTTTCCATTTATTACGACAGACTGACTGTCTTTGTGTCGTATAGGAACCAGCAGATAACGTCGCAGGTGATATTGCCTCCGCTGGCTCACGAAAAGCGGAGCACAGTTGCGATGTCTCCAACAACCCAACCCACCCAGCAGCCACTGCACTGCGCTGCCTTGTTAAGGAGGAAAGTATACAGCAGTCCCTTGCATCTTAGAAGAAAATGTGTAATGGAATTTGTGATCCGAAAAGATAAGGGAACCCAAATGTGA

Coding sequence (CDS)

ATGGCAGAAAGAAACGAAGAGCAGGGCGATGTCCATGATCAGAAGGATTTGAAAGAAGAAAAGAACAGAGCAAGATTCTCATCCCGATACTACTCAAAAAGAACTCGCCGCTCTGTTTGCGCATGCATCTCCATCTTCCTCCTCGTAATTGGTGTCGTGGCTCTCACTCTGTGGCTTGTCTACCGCCCCATTGACCCTCAATTCACCGTGGTTGGAGCCGCAATATATGACCTCAACATGTCATCTCTTCCGCTGCTGTCTACAACCATGCAATTCACAATCGTTACGAGGAACCCCAACAGGCGAGTTTCCATTTATTACGACAGACTGACTGTCTTTGTGTCGTATAGGAACCAGCAGATAACGTCGCAGGTGATATTGCCTCCGCTGGCTCACGAAAAGCGGAGCACAGTTGCGATGTCTCCAACAACCCAACCCACCCAGCAGCCACTGCACTGCGCTGCCTTGTTAAGGAGGAAAGTATACAGCAGTCCCTTGCATCTTAGAAGAAAATGTGTAATGGAATTTGTGATCCGAAAAGATAAGGGAACCCAAATGTGA

Protein sequence

MAERNEEQGDVHDQKDLKEEKNRARFSSRYYSKRTRRSVCACISIFLLVIGVVALTLWLVYRPIDPQFTVVGAAIYDLNMSSLPLLSTTMQFTIVTRNPNRRVSIYYDRLTVFVSYRNQQITSQVILPPLAHEKRSTVAMSPTTQPTQQPLHCAALLRRKVYSSPLHLRRKCVMEFVIRKDKGTQM

Homology

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BLAST of CsaV3_3G007080 vs. NCBI nr
Match: XP_004133755.1 (PREDICTED: protein YLS9-like [Cucumis sativus] >KGN56326.1 hypothetical protein Csa_3G116630 [Cucumis sativus])

HSP 1 Score: 270.4 bits (690), Expect = 4.6e-69
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MAERNEEQGDVHDQKDLKEEKNRARFSSRYYSKRTRRSVCACISIFLLVIGVVALTLWLV 60
           MAERNEEQGDVHDQKDLKEEKNRARFSSRYYSKRTRRSVCACISIFLLVIGVVALTLWLV
Sbjct: 1   MAERNEEQGDVHDQKDLKEEKNRARFSSRYYSKRTRRSVCACISIFLLVIGVVALTLWLV 60

Query: 61  YRPIDPQFTVVGAAIYDLNMSSLPLLSTTMQFTIVTRNPNRRVSIYYDRLTVFVSYRNQQ 120
           YRPIDPQFTVVGAAIYDLNMSSLPLLSTTMQFTIVTRNPNRRVSIYYDRLTVFVSYRNQQ
Sbjct: 61  YRPIDPQFTVVGAAIYDLNMSSLPLLSTTMQFTIVTRNPNRRVSIYYDRLTVFVSYRNQQ 120

Query: 121 ITSQVILPPLAHEKRSTVAMSP 143
           ITSQVILPPLAHEKRSTVAMSP
Sbjct: 121 ITSQVILPPLAHEKRSTVAMSP 142

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BLAST of CsaV3_3G007080 vs. NCBI nr
Match: XP_008437747.1 (PREDICTED: NDR1/HIN1-like protein 12 [Cucumis melo])

HSP 1 Score: 258.1 bits (658), Expect = 2.4e-65
Identity = 134/142 (94.37%), Postives = 139/142 (97.89%), Query Frame = 0


Query: 1   MAERNEEQGDVHDQKDLKEEKNRARFSSRYYSKRTRRSVCACISIFLLVIGVVALTLWLV 60
           MAERNEEQ DVH+++DLKEEKNRARFS RYYSK TRRSVCACISIFLL+IGVVALTLWLV
Sbjct: 1   MAERNEEQDDVHNKRDLKEEKNRARFSHRYYSKSTRRSVCACISIFLLIIGVVALTLWLV 60

Query: 61  YRPIDPQFTVVGAAIYDLNMSSLPLLSTTMQFTIVTRNPNRRVSIYYDRLTVFVSYRNQQ 120
           YRPIDPQFTVVGAAIYDLNMSSLPLLSTTMQFTIVTRNPNRRVSIYYDRLT+FVSYRNQQ
Sbjct: 61  YRPIDPQFTVVGAAIYDLNMSSLPLLSTTMQFTIVTRNPNRRVSIYYDRLTIFVSYRNQQ 120

Query: 121 ITSQVILPPLAHEKRSTVAMSP 143
           ITSQVILPPLAHEKRSTVAMSP
Sbjct: 121 ITSQVILPPLAHEKRSTVAMSP 142

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BLAST of CsaV3_3G007080 vs. NCBI nr
Match: XP_022146145.1 (NDR1/HIN1-like protein 12 [Momordica charantia])

HSP 1 Score: 202.2 bits (513), Expect = 1.5e-48
Identity = 107/126 (84.92%), Postives = 114/126 (90.48%), Query Frame = 0


Query: 18  KEEKNRAR-FSSRYYSKRTRRSVCACISIFLLVIGVVALTLWLVYRPIDPQFTVVGAAIY 77
           KE K+R R + S+YYSK T RSVCACISIFLL+IGVVAL LWLVYRP DPQFTVV AAIY
Sbjct: 20  KEAKHRKRIYPSQYYSKSTHRSVCACISIFLLMIGVVALILWLVYRPTDPQFTVVSAAIY 79

Query: 78  DLNMSSLPLLSTTMQFTIVTRNPNRRVSIYYDRLTVFVSYRNQQITSQVILPPLAHEKRS 137
           DLNMSS PLLSTTMQFTI+TRNPNRRVSIYYDRLT FVSYRNQQITSQV+LPPL HEKRS
Sbjct: 80  DLNMSSPPLLSTTMQFTIITRNPNRRVSIYYDRLTAFVSYRNQQITSQVMLPPLFHEKRS 139

Query: 138 TVAMSP 143
           T+AMSP
Sbjct: 140 TLAMSP 145

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BLAST of CsaV3_3G007080 vs. NCBI nr
Match: XP_023539611.1 (NDR1/HIN1-like protein 12 [Cucurbita pepo subsp. pepo] >XP_023539613.1 NDR1/HIN1-like protein 12 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 201.4 bits (511), Expect = 2.6e-48
Identity = 113/146 (77.40%), Postives = 122/146 (83.56%), Query Frame = 0


Query: 1   MAERNE----EQGDVHDQKDLKEEKNRARFSSRYYSKRTRRSVCACISIFLLVIGVVALT 60
           MAER+E    +Q  V + KDLKEEK  A   S YY K TRRSVCACISIFLL+IGVVALT
Sbjct: 1   MAERDEAQEQKQEHVQNPKDLKEEKKGA---SPYYPKTTRRSVCACISIFLLIIGVVALT 60

Query: 61  LWLVYRPIDPQFTVVGAAIYDLNMSSLPLLSTTMQFTIVTRNPNRRVSIYYDRLTVFVSY 120
           LWLVYRP  PQF VVGAAIY+LN+SSLPLLST MQFTI+TRNPNRRV IYYDRLT FVSY
Sbjct: 61  LWLVYRPTHPQFKVVGAAIYELNISSLPLLSTRMQFTILTRNPNRRVGIYYDRLTAFVSY 120

Query: 121 RNQQITSQVILPPLAHEKRSTVAMSP 143
           RNQQIT QV+LPPL HEK+STVAMSP
Sbjct: 121 RNQQITPQVMLPPLFHEKQSTVAMSP 143

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BLAST of CsaV3_3G007080 vs. NCBI nr
Match: XP_022941246.1 (NDR1/HIN1-like protein 12 [Cucurbita moschata])

HSP 1 Score: 201.1 bits (510), Expect = 3.4e-48
Identity = 113/146 (77.40%), Postives = 122/146 (83.56%), Query Frame = 0


Query: 1   MAERNE----EQGDVHDQKDLKEEKNRARFSSRYYSKRTRRSVCACISIFLLVIGVVALT 60
           MAER+E    +Q  V + KDLKEEK  A   S YY K TRRSVCACISIFLL+IGVVALT
Sbjct: 1   MAERDEAQEQKQEHVQNPKDLKEEKKGA---SPYYPKTTRRSVCACISIFLLIIGVVALT 60

Query: 61  LWLVYRPIDPQFTVVGAAIYDLNMSSLPLLSTTMQFTIVTRNPNRRVSIYYDRLTVFVSY 120
           LWLVYRP  PQF VVGAAIY+LN+SSLPLLST MQFTI+TRNPNRRV IYYDRLT FVSY
Sbjct: 61  LWLVYRPSHPQFKVVGAAIYELNISSLPLLSTRMQFTILTRNPNRRVGIYYDRLTAFVSY 120

Query: 121 RNQQITSQVILPPLAHEKRSTVAMSP 143
           RNQQIT QV+LPPL HEK+STVAMSP
Sbjct: 121 RNQQITPQVMLPPLFHEKQSTVAMSP 143

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BLAST of CsaV3_3G007080 vs. TAIR10
Match: AT4G01410.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 119.8 bits (299), Expect = 1.8e-27
Identity = 56/105 (53.33%), Postives = 84/105 (80.00%), Query Frame = 0


Query: 38  SVCACISIFLLVIGVVALTLWLVYRPIDPQFTVVGAAIYDLNMSSLPLLSTTMQFTIVTR 97
           ++C  I   L+++G++AL LWLVYRP  P+ TVVGAAIYDLN ++ PL+ST++QF+++ R
Sbjct: 43  AICGAIFTILVILGIIALILWLVYRPHKPRLTVVGAAIYDLNFTAPPLISTSVQFSVLAR 102

Query: 98  NPNRRVSIYYDRLTVFVSYRNQQITSQVILPPLAHEKRSTVAMSP 143
           NPNRRVSI+YD+L+++V+Y++Q IT  + LPPL    +STV ++P
Sbjct: 103 NPNRRVSIHYDKLSMYVTYKDQIITPPLPLPPLRLGHKSTVVIAP 147

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BLAST of CsaV3_3G007080 vs. TAIR10
Match: AT3G52470.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 84.3 bits (207), Expect = 8.5e-17
Identity = 42/115 (36.52%), Postives = 64/115 (55.65%), Query Frame = 0


Query: 37  RSVCACISIFLLVIGVVALTLWLVYRPIDPQFTVVGAAIYDLNMSSLPLLSTTMQFTIVT 96
           R +CA I  F++   +    +W++ RP  P+F +  A +Y  N+S   LL++  Q TI +
Sbjct: 17  RKLCAAIIAFIVXXLITIFLVWVILRPTKPRFVLQDATVYAFNLSQPNLLTSNFQVTIAS 76

Query: 97  RNPNRRVSIYYDRLTVFVSYRNQQITSQVILPPLAHEKRSTVAMSPTTQPTQQPL 152
           RNPN ++ IYYDRL V+ +Y NQQIT +  +PP     +     SP    T  P+
Sbjct: 77  RNPNSKIGIYYDRLHVYATYMNQQITLRTAIPPTYQGHKEVNVWSPFVYGTAVPI 131

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BLAST of CsaV3_3G007080 vs. TAIR10
Match: AT5G53730.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 77.8 bits (190), Expect = 7.9e-15
Identity = 41/110 (37.27%), Postives = 67/110 (60.91%), Query Frame = 0


Query: 44  SIFLLVIGVVALTLWLVYRPIDPQFTVVGAAIYDLNM--SSLPLLSTTMQFTIVTRNPNR 103
           S F   + ++   +WL+  P  P+F++  A IY LN+  SS  LL++++Q T+ ++NPN+
Sbjct: 32  STFFSGLLLIIFLVWLILHPERPEFSLTEADIYSLNLTTSSTHLLNSSVQLTLFSKNPNK 91

Query: 104 RVSIYYDRLTVFVSYRNQQITSQVILPPLAHEKRSTVAMSPTTQPTQQPL 152
           +V IYYD+L V+ +YR QQITS+  LPP          ++   Q T+ P+
Sbjct: 92  KVGIYYDKLLVYAAYRGQQITSEASLPPFYQSHEEINLLTAFLQGTELPV 141

[Close]

BLAST of CsaV3_3G007080 vs. TAIR10
Match: AT4G09590.1 (NDR1/HIN1-like 22)

HSP 1 Score: 75.9 bits (185), Expect = 3.0e-14
Identity = 38/113 (33.63%), Postives = 60/113 (53.10%), Query Frame = 0


Query: 39  VCACISIFLLVIGVVALTLWLVYRPIDPQFTVVGAAIYDLNMSSLPLLSTTMQFTIVTRN 98
           +C  I  F++++ +    +W++ +P +P+F +    +Y  N+S   LL++  Q TI +RN
Sbjct: 22  ICGAIIGFIIIVLMTIFLVWIILQPKNPEFILQDTTVYAFNLSQPNLLTSKFQITIASRN 81

Query: 99  PNRRVSIYYDRLTVFVSYRNQQITSQVILPPLAHEKRSTVAMSPTTQPTQQPL 152
            N  + IYYD L  + SYRNQQIT    LPP     +     SP     Q P+
Sbjct: 82  RNSNIGIYYDHLHAYASYRNQQITLASDLPPTYQRHKEDSVWSPLLYGNQVPI 134

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BLAST of CsaV3_3G007080 vs. TAIR10
Match: AT2G35960.1 (NDR1/HIN1-like 12)

HSP 1 Score: 74.7 bits (182), Expect = 6.7e-14
Identity = 36/95 (37.89%), Postives = 54/95 (56.84%), Query Frame = 0


Query: 57  LWLVYRPIDPQFTVVGAAIYDLNMSSLPLLSTTMQFTIVTRNPNRRVSIYYDRLTVFVSY 116
           +W++ +P  P+F +  A +Y  N+S   LL++  Q TI +RN N R+ IYYDRL V+ +Y
Sbjct: 39  VWIILQPTKPRFILQDATVYAFNLSQPNLLTSNFQITIASRNRNSRIGIYYDRLHVYATY 98

Query: 117 RNQQITSQVILPPLAHEKRSTVAMSPTTQPTQQPL 152
           RNQQIT +  +PP     +     SP       P+
Sbjct: 99  RNQQITLRTAIPPTYQGHKEDNVWSPFVYGNSVPI 133

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BLAST of CsaV3_3G007080 vs. Swiss-Prot
Match: sp|Q9FI03|NHL26_ARATH (NDR1/HIN1-like protein 26 OS=Arabidopsis thaliana OX=3702 GN=NHL26 PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.4e-13
Identity = 41/110 (37.27%), Postives = 67/110 (60.91%), Query Frame = 0


Query: 44  SIFLLVIGVVALTLWLVYRPIDPQFTVVGAAIYDLNM--SSLPLLSTTMQFTIVTRNPNR 103
           S F   + ++   +WL+  P  P+F++  A IY LN+  SS  LL++++Q T+ ++NPN+
Sbjct: 32  STFFSGLLLIIFLVWLILHPERPEFSLTEADIYSLNLTTSSTHLLNSSVQLTLFSKNPNK 91

Query: 104 RVSIYYDRLTVFVSYRNQQITSQVILPPLAHEKRSTVAMSPTTQPTQQPL 152
           +V IYYD+L V+ +YR QQITS+  LPP          ++   Q T+ P+
Sbjct: 92  KVGIYYDKLLVYAAYRGQQITSEASLPPFYQSHEEINLLTAFLQGTELPV 141

[Close]

BLAST of CsaV3_3G007080 vs. Swiss-Prot
Match: sp|Q9SJ54|NHL12_ARATH (NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana OX=3702 GN=NHL12 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-12
Identity = 36/95 (37.89%), Postives = 54/95 (56.84%), Query Frame = 0


Query: 57  LWLVYRPIDPQFTVVGAAIYDLNMSSLPLLSTTMQFTIVTRNPNRRVSIYYDRLTVFVSY 116
           +W++ +P  P+F +  A +Y  N+S   LL++  Q TI +RN N R+ IYYDRL V+ +Y
Sbjct: 39  VWIILQPTKPRFILQDATVYAFNLSQPNLLTSNFQITIASRNRNSRIGIYYDRLHVYATY 98

Query: 117 RNQQITSQVILPPLAHEKRSTVAMSPTTQPTQQPL 152
           RNQQIT +  +PP     +     SP       P+
Sbjct: 99  RNQQITLRTAIPPTYQGHKEDNVWSPFVYGNSVPI 133

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BLAST of CsaV3_3G007080 vs. Swiss-Prot
Match: sp|Q9SRN0|NHL1_ARATH (NDR1/HIN1-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=NHL1 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.6e-12
Identity = 37/99 (37.37%), Postives = 56/99 (56.57%), Query Frame = 0


Query: 55  LTLWLVYRPIDPQFTVVGAAIYDLNMSSLP--LLSTTMQFTIVTRNPNRRVSIYYDRLTV 114
           L +W + +P  P+F +  A +Y  N+S  P  LL++  Q T+ +RNPN ++ IYYDRL V
Sbjct: 34  LLIWAILQPSKPRFILQDATVYAFNVSGNPPNLLTSNFQITLSSRNPNNKIGIYYDRLDV 93

Query: 115 FVSYRNQQITSQVILPPLAHEKRSTVAMSPTTQPTQQPL 152
           + +YR+QQIT    +PP     +     SP    T  P+
Sbjct: 94  YATYRSQQITFPTSIPPTYQGHKDVDIWSPFVYGTSVPI 132

[Close]

BLAST of CsaV3_3G007080 vs. Swiss-Prot
Match: sp|Q9SJ52|NHL10_ARATH (NDR1/HIN1-like protein 10 OS=Arabidopsis thaliana OX=3702 GN=NHL10 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.4e-07
Identity = 37/125 (29.60%), Postives = 64/125 (51.20%), Query Frame = 0


Query: 30  YYSKRTRRSV-CACISIF-------LLVIGVVALTLWLVYRPIDPQFTVVGAAIYDLNMS 89
           YY +   R   C  +S+F       ++++GV AL  WL+ RP   +F V  A++   + +
Sbjct: 24  YYRRGHGRGCGCCLLSLFVKVIISLIVILGVAALIFWLIVRPRAIKFHVTDASLTRFDHT 83

Query: 90  SLP-LLSTTMQFTIVTRNPNRRVSIYYDRLTVFVSYRNQQITSQVILPPLAHEKRSTVAM 146
           S   +L   +  T+  RNPN+R+ +YYDR+     Y  ++  S + L P     ++T  +
Sbjct: 84  SPDNILRYNLALTVPVRNPNKRIGLYYDRIEAHAYYEGKRF-STITLTPFYQGHKNTTVL 143

[Close]

BLAST of CsaV3_3G007080 vs. Swiss-Prot
Match: sp|Q9ZVD2|NHL13_ARATH (NDR1/HIN1-like protein 13 OS=Arabidopsis thaliana OX=3702 GN=NHL13 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.2e-06
Identity = 29/104 (27.88%), Postives = 59/104 (56.73%), Query Frame = 0


Query: 33  KRTRRSVCAC------ISIFLLVI--GVVALTLWLVYRPIDPQFTVVGAAIYDLNMSSLP 92
           K+T RS C C       ++F+L++  G+    L+L+YRP  P++++ G ++  +N++S  
Sbjct: 64  KKTNRSNCRCCFCSFLAAVFILIVLAGISFAVLYLIYRPEAPKYSIEGFSVSGINLNSTS 123

Query: 93  LLSTTMQFTIVTRNPNRRVSIYYDRLTVFVSYRNQQITSQVILP 129
            +S +   T+ +RN N ++ +YY++ +    Y N    S  ++P
Sbjct: 124 PISPSFNVTVRSRNGNGKIGVYYEKESSVDVYYNDVDISNGVMP 167

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BLAST of CsaV3_3G007080 vs. TrEMBL
Match: tr|A0A0A0L882|A0A0A0L882_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G116630 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 3.0e-69
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MAERNEEQGDVHDQKDLKEEKNRARFSSRYYSKRTRRSVCACISIFLLVIGVVALTLWLV 60
           MAERNEEQGDVHDQKDLKEEKNRARFSSRYYSKRTRRSVCACISIFLLVIGVVALTLWLV
Sbjct: 1   MAERNEEQGDVHDQKDLKEEKNRARFSSRYYSKRTRRSVCACISIFLLVIGVVALTLWLV 60

Query: 61  YRPIDPQFTVVGAAIYDLNMSSLPLLSTTMQFTIVTRNPNRRVSIYYDRLTVFVSYRNQQ 120
           YRPIDPQFTVVGAAIYDLNMSSLPLLSTTMQFTIVTRNPNRRVSIYYDRLTVFVSYRNQQ
Sbjct: 61  YRPIDPQFTVVGAAIYDLNMSSLPLLSTTMQFTIVTRNPNRRVSIYYDRLTVFVSYRNQQ 120

Query: 121 ITSQVILPPLAHEKRSTVAMSP 143
           ITSQVILPPLAHEKRSTVAMSP
Sbjct: 121 ITSQVILPPLAHEKRSTVAMSP 142

[Close]

BLAST of CsaV3_3G007080 vs. TrEMBL
Match: tr|A0A1S3AVC7|A0A1S3AVC7_CUCME (NDR1/HIN1-like protein 12 OS=Cucumis melo OX=3656 GN=LOC103483090 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 1.6e-65
Identity = 134/142 (94.37%), Postives = 139/142 (97.89%), Query Frame = 0


Query: 1   MAERNEEQGDVHDQKDLKEEKNRARFSSRYYSKRTRRSVCACISIFLLVIGVVALTLWLV 60
           MAERNEEQ DVH+++DLKEEKNRARFS RYYSK TRRSVCACISIFLL+IGVVALTLWLV
Sbjct: 1   MAERNEEQDDVHNKRDLKEEKNRARFSHRYYSKSTRRSVCACISIFLLIIGVVALTLWLV 60

Query: 61  YRPIDPQFTVVGAAIYDLNMSSLPLLSTTMQFTIVTRNPNRRVSIYYDRLTVFVSYRNQQ 120
           YRPIDPQFTVVGAAIYDLNMSSLPLLSTTMQFTIVTRNPNRRVSIYYDRLT+FVSYRNQQ
Sbjct: 61  YRPIDPQFTVVGAAIYDLNMSSLPLLSTTMQFTIVTRNPNRRVSIYYDRLTIFVSYRNQQ 120

Query: 121 ITSQVILPPLAHEKRSTVAMSP 143
           ITSQVILPPLAHEKRSTVAMSP
Sbjct: 121 ITSQVILPPLAHEKRSTVAMSP 142

[Close]

BLAST of CsaV3_3G007080 vs. TrEMBL
Match: tr|A0A2P4HHI9|A0A2P4HHI9_QUESU (Ndr1/hin1-like protein 1 OS=Quercus suber OX=58331 GN=CFP56_27763 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.8e-37
Identity = 79/115 (68.70%), Postives = 99/115 (86.09%), Query Frame = 0


Query: 37  RSVCACISIFLLVIGVVALTLWLVYRPIDPQFTVVGAAIYDLNMSSLPLLSTTMQFTIVT 96
           R++C+CI+IFLL+IGV ALTLWLVYRP  PQF VVGAA+Y+LNMS+LPL+STTMQFT++T
Sbjct: 34  RALCSCITIFLLLIGVTALTLWLVYRPQKPQFKVVGAAVYELNMSALPLISTTMQFTVIT 93

Query: 97  RNPNRRVSIYYDRLTVFVSYRNQQITSQVILPPLAHEKRSTVAMSPTTQPTQQPL 152
           RNPN+RVS+YYD+L+ FVSY+N+ IT QV+LPPL H K STVA+SP    T  P+
Sbjct: 94  RNPNKRVSVYYDKLSTFVSYKNEPITPQVMLPPLYHRKHSTVAVSPVVGGTAVPV 148

[Close]

BLAST of CsaV3_3G007080 vs. TrEMBL
Match: tr|M5X269|M5X269_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa011309mg PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 2.3e-37
Identity = 88/130 (67.69%), Postives = 98/130 (75.38%), Query Frame = 0


Query: 13  DQKDLKEEKNRARFSSRYYSKRTRRSVCACISIFLLVIGVVALTLWLVYRPIDPQFTVVG 72
           D K     K R   SS  Y+    RS+C C+SIFLL+ GV ALTLWLVYRP  PQFTVVG
Sbjct: 6   DHKKNPTTKKRYMASSPIYTSGPYRSICTCLSIFLLLAGVTALTLWLVYRPHKPQFTVVG 65

Query: 73  AAIYDLNMSSLPLLSTTMQFTIVTRNPNRRVSIYYDRLTVFVSYRNQQITSQVILPPLAH 132
           AA+YDLN +S PL+STTMQFT+VT NPNRRVSIYYDRL  FVSY+NQ IT QV LP L H
Sbjct: 66  AAVYDLNATSPPLISTTMQFTLVTHNPNRRVSIYYDRLYAFVSYKNQAITPQVALPSLVH 125

Query: 133 EKRSTVAMSP 143
           E RSTVA+SP
Sbjct: 126 EHRSTVAVSP 135

[Close]

BLAST of CsaV3_3G007080 vs. TrEMBL
Match: tr|A0A251QIG6|A0A251QIG6_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G198600 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 3.1e-37
Identity = 84/116 (72.41%), Postives = 94/116 (81.03%), Query Frame = 0


Query: 27  SSRYYSKRTRRSVCACISIFLLVIGVVALTLWLVYRPIDPQFTVVGAAIYDLNMSSLPLL 86
           SS  Y+    RS+C C+SIFLL+ GV ALTLWLVYRP  PQFTVVGAA+YDLN +S PL+
Sbjct: 36  SSPIYTSGPYRSICTCLSIFLLLAGVTALTLWLVYRPHKPQFTVVGAAVYDLNATSPPLI 95

Query: 87  STTMQFTIVTRNPNRRVSIYYDRLTVFVSYRNQQITSQVILPPLAHEKRSTVAMSP 143
           STTMQFT+VT NPNRRVSIYYDRL  FVSY+NQ IT QV LP L HE RSTVA+SP
Sbjct: 96  STTMQFTLVTHNPNRRVSIYYDRLYAFVSYKNQAITPQVALPSLVHEHRSTVAVSP 151

The following BLAST results are available for this feature:

BLAST of CsaV3_3G007080 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004133755.1	4.6e-69	100.00	PREDICTED: protein YLS9-like [Cucumis sativus] >KGN56326.1 hypothetical protein ...	[more]
XP_008437747.1	2.4e-65	94.37	PREDICTED: NDR1/HIN1-like protein 12 [Cucumis melo]	[more]
XP_022146145.1	1.5e-48	84.92	NDR1/HIN1-like protein 12 [Momordica charantia]	[more]
XP_023539611.1	2.6e-48	77.40	NDR1/HIN1-like protein 12 [Cucurbita pepo subsp. pepo] >XP_023539613.1 NDR1/HIN1...	[more]
XP_022941246.1	3.4e-48	77.40	NDR1/HIN1-like protein 12 [Cucurbita moschata]	[more]

BLAST of CsaV3_3G007080 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G01410.1	1.8e-27	53.33	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT3G52470.1	8.5e-17	36.52	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT5G53730.1	7.9e-15	37.27	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT4G09590.1	3.0e-14	33.63	NDR1/HIN1-like 22	[more]
AT2G35960.1	6.7e-14	37.89	NDR1/HIN1-like 12	[more]

BLAST of CsaV3_3G007080 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FI03\|NHL26_ARATH	1.4e-13	37.27	NDR1/HIN1-like protein 26 OS=Arabidopsis thaliana OX=3702 GN=NHL26 PE=2 SV=1	[more]
sp\|Q9SJ54\|NHL12_ARATH	1.2e-12	37.89	NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana OX=3702 GN=NHL12 PE=2 SV=1	[more]
sp\|Q9SRN0\|NHL1_ARATH	4.6e-12	37.37	NDR1/HIN1-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=NHL1 PE=2 SV=1	[more]
sp\|Q9SJ52\|NHL10_ARATH	3.4e-07	29.60	NDR1/HIN1-like protein 10 OS=Arabidopsis thaliana OX=3702 GN=NHL10 PE=2 SV=1	[more]
sp\|Q9ZVD2\|NHL13_ARATH	2.2e-06	27.88	NDR1/HIN1-like protein 13 OS=Arabidopsis thaliana OX=3702 GN=NHL13 PE=2 SV=1	[more]

BLAST of CsaV3_3G007080 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L882\|A0A0A0L882_CUCSA	3.0e-69	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G116630 PE=4 SV=1	[more]
tr\|A0A1S3AVC7\|A0A1S3AVC7_CUCME	1.6e-65	94.37	NDR1/HIN1-like protein 12 OS=Cucumis melo OX=3656 GN=LOC103483090 PE=4 SV=1	[more]
tr\|A0A2P4HHI9\|A0A2P4HHI9_QUESU	1.8e-37	68.70	Ndr1/hin1-like protein 1 OS=Quercus suber OX=58331 GN=CFP56_27763 PE=4 SV=1	[more]
tr\|M5X269\|M5X269_PRUPE	2.3e-37	67.69	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa011309mg PE=4 SV=1	[more]
tr\|A0A251QIG6\|A0A251QIG6_PRUPE	3.1e-37	72.41	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G198600 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004864	LEA_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0000160	phosphorelay signal transduction system
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0044464	cell part
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G007080.1	CsaV3_3G007080.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA_2 subgroup	PFAM	PF03168	LEA_2	coord: 97..143 e-value: 1.2E-5 score: 25.6
None	No IPR available	PANTHER	PTHR31415	FAMILY NOT NAMED	coord: 30..147
None	No IPR available	PANTHER	PTHR31415:SF9	SUBFAMILY NOT NAMED	coord: 30..147

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_3G007080	Cucsa.260120	Cucumber (Gy14) v1	cgycucB387
CsaV3_3G007080	CmoCh06G009520	Cucurbita moschata (Rifu)	cmocucB0953
CsaV3_3G007080	Cp4.1LG08g00120	Cucurbita pepo (Zucchini)	cpecucB1058
CsaV3_3G007080	CsGy3G007130	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G007080	Cla021058	Watermelon (97103) v1	cucwmB239
CsaV3_3G007080	MELO3C005927	Melon (DHL92) v3.5.1	cucmeB236
CsaV3_3G007080	MELO3C005927.2	Melon (DHL92) v3.6.1	cucmedB230
CsaV3_3G007080	Cla97C05G079920	Watermelon (97103) v2	cucwmbB206

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G007080	Wax gourd	cucwgoB288
CsaV3_3G007080	Cucurbita maxima (Rimu)	cmacucB0837
CsaV3_3G007080	Cucurbita maxima (Rimu)	cmacucB0965
CsaV3_3G007080	Cucurbita moschata (Rifu)	cmocucB0822
CsaV3_3G007080	Cucurbita pepo (Zucchini)	cpecucB0491
CsaV3_3G007080	Wild cucumber (PI 183967)	cpicucB144
CsaV3_3G007080	Bottle gourd (USVL1VR-Ls)	cuclsiB228
CsaV3_3G007080	Watermelon (Charleston Gray)	cucwcgB225