CmaCh06G009120 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh06G009120
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Late embryogenesis abundant hydroxyproline-rich glycoprotein family
Location	Cma_Chr06 : 5999655 .. 5999966 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCCCTGTACTAGGAGGTGGGGCGGTGGCAGTGCCGTTGGAGGTGGGAAATGGGTTGGTCACGGATGAAGCGATTGGAGTTGTGGGGTTGAGAGTTGTGTTGTTGGGGAGACTAAGATGGAAAGCTGGGCCAGTCAAGACTGGGCGTTATGCGGTAATTGTGAAATGTGACGTGTTGGTGGGTCTCAAAAGTGGGGTGGTGGGTCAAGTTCCGTTGCTTGGTTTCCCCGCTTGCCAGGTTGATATTGGGTCTCAAAAGTGGGGTGGTGGGTCAAGTTCCGTTGCTTGGTTTCCCCGCTTGCCAGGTTGA

mRNA sequence

ATGTCCCCTGTACTAGGAGGTGGGGCGGTGGCAGTGCCGTTGGAGGTGGGAAATGGGTTGGTCACGGATGAAGCGATTGGAGTTGTGGGGTTGAGAGTTGTGTTGTTGGGGAGACTAAGATGGAAAGCTGGGCCAGTCAAGACTGGGCGTTATGCGGTAATTGTGAAATGTGACGTGTTGGTGGGTCTCAAAAGTGGGGTGGTGGGTCAAGTTCCGTTGCTTGGTTTCCCCGCTTGCCAGGTTGATATTGGGTCTCAAAAGTGGGGTGGTGGGTCAAGTTCCGTTGCTTGGTTTCCCCGCTTGCCAGGTTGA

Coding sequence (CDS)

ATGTCCCCTGTACTAGGAGGTGGGGCGGTGGCAGTGCCGTTGGAGGTGGGAAATGGGTTGGTCACGGATGAAGCGATTGGAGTTGTGGGGTTGAGAGTTGTGTTGTTGGGGAGACTAAGATGGAAAGCTGGGCCAGTCAAGACTGGGCGTTATGCGGTAATTGTGAAATGTGACGTGTTGGTGGGTCTCAAAAGTGGGGTGGTGGGTCAAGTTCCGTTGCTTGGTTTCCCCGCTTGCCAGGTTGATATTGGGTCTCAAAAGTGGGGTGGTGGGTCAAGTTCCGTTGCTTGGTTTCCCCGCTTGCCAGGTTGA

Protein sequence

MSPVLGGGAVAVPLEVGNGLVTDEAIGVVGLRVVLLGRLRWKAGPVKTGRYAVIVKCDVLVGLKSGVVGQVPLLGFPACQVDIGSQKWGGGSSSVAWFPRLPG

Homology

[Close]

BLAST of CmaCh06G009120 vs. TrEMBL
Match: A0A0A0L882_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116630 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.0e-29
Identity = 66/83 (79.52%), Postives = 75/83 (90.36%), Query Frame = 1


Query: 1   MSPVLGGGAVAVPLEVGNGLVTDEAIGVVGLRVVLLGRLRWKAGPVKTGRYAVIVKCDVL 60
           MSPVLGGGAVAV LEV NGLVTD+ IGV+GLRVVLLGRLRWKAGP+KTGRY+V VKCDVL
Sbjct: 140 MSPVLGGGAVAVSLEVANGLVTDQTIGVLGLRVVLLGRLRWKAGPLKTGRYSVYVKCDVL 199

Query: 61  VGLKSGVVGQVPLLGFPACQVDI 84
           VG+K G+VGQ+P+L  P C+VDI
Sbjct: 200 VGVKRGLVGQLPMLASPPCKVDI 222

[Close]

BLAST of CmaCh06G009120 vs. TrEMBL
Match: B9RNK9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1339920 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.8e-25
Identity = 60/83 (72.29%), Postives = 68/83 (81.93%), Query Frame = 1


Query: 1   MSPVLGGGAVAVPLEVGNGLVTDEAIGVVGLRVVLLGRLRWKAGPVKTGRYAVIVKCDVL 60
           +SPVLGG  V V +EV NGLV DE+ GVV LRVVLLGRLRWKAG +KTGRY V VKCD+ 
Sbjct: 144 LSPVLGGAQVPVSVEVANGLVMDESYGVVALRVVLLGRLRWKAGVIKTGRYGVYVKCDIW 203

Query: 61  VGLKSGVVGQVPLLGFPACQVDI 84
           VGLK G+VGQVPLLG P C+VD+
Sbjct: 204 VGLKRGLVGQVPLLGSPQCKVDV 226

[Close]

BLAST of CmaCh06G009120 vs. TrEMBL
Match: M5X269_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011309mg PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.8e-25
Identity = 62/83 (74.70%), Postives = 68/83 (81.93%), Query Frame = 1


Query: 1   MSPVLGGGAVAVPLEVGNGLVTDEAIGVVGLRVVLLGRLRWKAGPVKTGRYAVIVKCDVL 60
           +SPVLGG AV V LEV NGL  DEA GVVGLRVV++GRLRWKAG ++T  Y V VKCDVL
Sbjct: 133 VSPVLGGRAVPVSLEVVNGLTMDEAYGVVGLRVVVMGRLRWKAGAIRTAHYGVYVKCDVL 192

Query: 61  VGLKSGVVGQVPLLGFPACQVDI 84
           VGLK G VGQVPLLG P+CQVDI
Sbjct: 193 VGLKRGFVGQVPLLGNPSCQVDI 215

[Close]

BLAST of CmaCh06G009120 vs. TrEMBL
Match: W9SKF9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_019625 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 4.0e-25
Identity = 66/85 (77.65%), Postives = 69/85 (81.18%), Query Frame = 1


Query: 1   MSPVLGGG-AVAVPLEVGNGLVTDEAIGVVGLRVVLLGRLRWKAGPVKTGRYAVIVKCDV 60
           MSPVLGGG AV V +EV NGL  DEA GVVGLRVVLLGRLRWK G VKTG Y + VKCDV
Sbjct: 127 MSPVLGGGQAVPVAVEVVNGLAVDEAYGVVGLRVVLLGRLRWKTGVVKTGHYGIYVKCDV 186

Query: 61  LVGLKSGVVGQVPLLGFP-ACQVDI 84
           LVGLK GVVGQVPLLG P  C+VDI
Sbjct: 187 LVGLKKGVVGQVPLLGSPVGCKVDI 211

[Close]

BLAST of CmaCh06G009120 vs. TrEMBL
Match: A0A067K036_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14179 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.2e-24
Identity = 57/83 (68.67%), Postives = 67/83 (80.72%), Query Frame = 1


Query: 1   MSPVLGGGAVAVPLEVGNGLVTDEAIGVVGLRVVLLGRLRWKAGPVKTGRYAVIVKCDVL 60
           +SPVLGG  V V  +V NGLV DE+ GVV LRVVLLGRLRWKAG ++TGRY V VKCD+ 
Sbjct: 120 LSPVLGGSKVPVSADVANGLVMDESYGVVALRVVLLGRLRWKAGAIRTGRYGVYVKCDIW 179

Query: 61  VGLKSGVVGQVPLLGFPACQVDI 84
           VGLK G++GQVPLLG P C+VD+
Sbjct: 180 VGLKKGLIGQVPLLGSPKCKVDV 202

[Close]

BLAST of CmaCh06G009120 vs. TAIR10
Match: AT4G01410.1 (AT4G01410.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 90.5 bits (223), Expect = 6.5e-19
Identity = 44/83 (53.01%), Postives = 55/83 (66.27%), Query Frame = 1


Query: 1   MSPVLGGGAVAVPLEVGNGLVTDEAIGVVGLRVVLLGRLRWKAGPVKTGRYAVIVKCDVL 60
           ++PV+GG  + V  EV NGL  DEA GVV +RVV+ GRLRWKAG +KTGRY    +CDV 
Sbjct: 145 IAPVMGGNGIPVSPEVANGLKNDEAYGVVLMRVVIFGRLRWKAGAIKTGRYGFYARCDVW 204

Query: 61  VGLKSGVVGQVPLLGFPACQVDI 84
           +       GQVPLL    C+VD+
Sbjct: 205 LRFNPSSNGQVPLLAPSTCKVDV 227

[Close]

BLAST of CmaCh06G009120 vs. NCBI nr
Match: gi|449431934|ref|XP_004133755.1| (PREDICTED: protein YLS9-like [Cucumis sativus])

HSP 1 Score: 136.3 bits (342), Expect = 2.9e-29
Identity = 66/83 (79.52%), Postives = 75/83 (90.36%), Query Frame = 1


Query: 1   MSPVLGGGAVAVPLEVGNGLVTDEAIGVVGLRVVLLGRLRWKAGPVKTGRYAVIVKCDVL 60
           MSPVLGGGAVAV LEV NGLVTD+ IGV+GLRVVLLGRLRWKAGP+KTGRY+V VKCDVL
Sbjct: 140 MSPVLGGGAVAVSLEVANGLVTDQTIGVLGLRVVLLGRLRWKAGPLKTGRYSVYVKCDVL 199

Query: 61  VGLKSGVVGQVPLLGFPACQVDI 84
           VG+K G+VGQ+P+L  P C+VDI
Sbjct: 200 VGVKRGLVGQLPMLASPPCKVDI 222

[Close]

BLAST of CmaCh06G009120 vs. NCBI nr
Match: gi|659074695|ref|XP_008437747.1| (PREDICTED: protein YLS9-like [Cucumis melo])

HSP 1 Score: 136.3 bits (342), Expect = 2.9e-29
Identity = 66/83 (79.52%), Postives = 75/83 (90.36%), Query Frame = 1


Query: 1   MSPVLGGGAVAVPLEVGNGLVTDEAIGVVGLRVVLLGRLRWKAGPVKTGRYAVIVKCDVL 60
           MSPVLGGGAVAV LEV NGLVTD+ IGV+GLRVVLLGRLRWKAGP+KTGRYAV VKCDVL
Sbjct: 140 MSPVLGGGAVAVSLEVANGLVTDQTIGVLGLRVVLLGRLRWKAGPLKTGRYAVYVKCDVL 199

Query: 61  VGLKSGVVGQVPLLGFPACQVDI 84
           +G+K G+VGQ+P+L  P C+VDI
Sbjct: 200 MGVKRGLVGQLPMLASPPCKVDI 222

[Close]

BLAST of CmaCh06G009120 vs. NCBI nr
Match: gi|694380987|ref|XP_009366593.1| (PREDICTED: protein YLS9 [Pyrus x bretschneideri])

HSP 1 Score: 124.0 bits (310), Expect = 1.5e-25
Identity = 61/83 (73.49%), Postives = 68/83 (81.93%), Query Frame = 1


Query: 1   MSPVLGGGAVAVPLEVGNGLVTDEAIGVVGLRVVLLGRLRWKAGPVKTGRYAVIVKCDVL 60
           +SPVLGGG V V +EV NGLV DE  GVVGLRVV+ GRLRWKAG ++TG Y + VKCDVL
Sbjct: 131 VSPVLGGGEVPVAVEVVNGLVMDEVYGVVGLRVVVTGRLRWKAGAIRTGHYGIYVKCDVL 190

Query: 61  VGLKSGVVGQVPLLGFPACQVDI 84
           VGLK G VGQVPLLG PAC+VDI
Sbjct: 191 VGLKKGFVGQVPLLGNPACKVDI 213

[Close]

BLAST of CmaCh06G009120 vs. NCBI nr
Match: gi|645284125|ref|XP_008245646.1| (PREDICTED: protein YLS9 [Prunus mume])

HSP 1 Score: 123.2 bits (308), Expect = 2.6e-25
Identity = 62/83 (74.70%), Postives = 68/83 (81.93%), Query Frame = 1


Query: 1   MSPVLGGGAVAVPLEVGNGLVTDEAIGVVGLRVVLLGRLRWKAGPVKTGRYAVIVKCDVL 60
           +SPVLGG AV V LEV NGL  DEA GVVGLRVV++GRLRWKAG ++T  Y V VKCDVL
Sbjct: 149 VSPVLGGRAVPVSLEVVNGLTMDEAYGVVGLRVVVMGRLRWKAGAIRTAHYGVYVKCDVL 208

Query: 61  VGLKSGVVGQVPLLGFPACQVDI 84
           VGLK G VGQVPLLG P+CQVDI
Sbjct: 209 VGLKRGFVGQVPLLGNPSCQVDI 231

[Close]

BLAST of CmaCh06G009120 vs. NCBI nr
Match: gi|255548047|ref|XP_002515080.1| (PREDICTED: protein YLS9 [Ricinus communis])

HSP 1 Score: 123.2 bits (308), Expect = 2.6e-25
Identity = 60/83 (72.29%), Postives = 68/83 (81.93%), Query Frame = 1


Query: 1   MSPVLGGGAVAVPLEVGNGLVTDEAIGVVGLRVVLLGRLRWKAGPVKTGRYAVIVKCDVL 60
           +SPVLGG  V V +EV NGLV DE+ GVV LRVVLLGRLRWKAG +KTGRY V VKCD+ 
Sbjct: 144 LSPVLGGAQVPVSVEVANGLVMDESYGVVALRVVLLGRLRWKAGVIKTGRYGVYVKCDIW 203

Query: 61  VGLKSGVVGQVPLLGFPACQVDI 84
           VGLK G+VGQVPLLG P C+VD+
Sbjct: 204 VGLKRGLVGQVPLLGSPQCKVDV 226

The following BLAST results are available for this feature:

BLAST of CmaCh06G009120 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh06G009120 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L882_CUCSA	2.0e-29	79.52	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116630 PE=4 SV=1	[more]
B9RNK9_RICCO	1.8e-25	72.29	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1339920 PE=4 SV=1	[more]
M5X269_PRUPE	1.8e-25	74.70	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011309mg PE=4 SV=1	[more]
W9SKF9_9ROSA	4.0e-25	77.65	Uncharacterized protein OS=Morus notabilis GN=L484_019625 PE=4 SV=1	[more]
A0A067K036_JATCU	1.2e-24	68.67	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14179 PE=4 SV=1	[more]

BLAST of CmaCh06G009120 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G01410.1	6.5e-19	53.01	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]

BLAST of CmaCh06G009120 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449431934\|ref\|XP_004133755.1\|	2.9e-29	79.52	PREDICTED: protein YLS9-like [Cucumis sativus]	[more]
gi\|659074695\|ref\|XP_008437747.1\|	2.9e-29	79.52	PREDICTED: protein YLS9-like [Cucumis melo]	[more]
gi\|694380987\|ref\|XP_009366593.1\|	1.5e-25	73.49	PREDICTED: protein YLS9 [Pyrus x bretschneideri]	[more]
gi\|645284125\|ref\|XP_008245646.1\|	2.6e-25	74.70	PREDICTED: protein YLS9 [Prunus mume]	[more]
gi\|255548047\|ref\|XP_002515080.1\|	2.6e-25	72.29	PREDICTED: protein YLS9 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000160	phosphorelay signal transduction system
biological_process	GO:0008150	biological_process
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G009120.1	CmaCh06G009120.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31415	FAMILY NOT NAMED	coord: 1..83 score: 1.6
None	No IPR available	PANTHER	PTHR31415:SF9	SUBFAMILY NOT NAMED	coord: 1..83 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh06G009120	Cucsa.260120	Cucumber (Gy14) v1	cgycmaB0728
CmaCh06G009120	Cla021058	Watermelon (97103) v1	cmawmB799
CmaCh06G009120	Csa3G116630	Cucumber (Chinese Long) v2	cmacuB818
CmaCh06G009120	MELO3C005927	Melon (DHL92) v3.5.1	cmameB766
CmaCh06G009120	CSPI03G06980	Wild cucumber (PI 183967)	cmacpiB830
CmaCh06G009120	CmoCh06G009520	Cucurbita moschata (Rifu)	cmacmoB833
CmaCh06G009120	Cp4.1LG08g00120	Cucurbita pepo (Zucchini)	cmacpeB850
CmaCh06G009120	MELO3C005927.2	Melon (DHL92) v3.6.1	cmamedB863
CmaCh06G009120	Cla97C05G079920	Watermelon (97103) v2	cmawmbB857
CmaCh06G009120	CsGy3G007130	Cucumber (Gy14) v2	cgybcmaB430
CmaCh06G009120	Carg22311	Silver-seed gourd	carcmaB0820

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh06G009120	Cucumber (Gy14) v2	cgybcmaB444
CmaCh06G009120	Melon (DHL92) v3.6.1	cmamedB853
CmaCh06G009120	Silver-seed gourd	carcmaB1405
CmaCh06G009120	Cucumber (Chinese Long) v3	cmacucB0965
CmaCh06G009120	Cucumber (Chinese Long) v3	cmacucB0982
CmaCh06G009120	Watermelon (97103) v2	cmawmbB841
CmaCh06G009120	Wax gourd	cmawgoB0994
CmaCh06G009120	Wax gourd	cmawgoB1017
CmaCh06G009120	Cucurbita maxima (Rimu)	cmacmaB290
CmaCh06G009120	Cucumber (Gy14) v1	cgycmaB0944
CmaCh06G009120	Cucurbita moschata (Rifu)	cmacmoB802
CmaCh06G009120	Cucurbita moschata (Rifu)	cmacmoB829
CmaCh06G009120	Wild cucumber (PI 183967)	cmacpiB844
CmaCh06G009120	Cucumber (Chinese Long) v2	cmacuB831
CmaCh06G009120	Melon (DHL92) v3.5.1	cmameB753
CmaCh06G009120	Watermelon (Charleston Gray)	cmawcgB723
CmaCh06G009120	Watermelon (Charleston Gray)	cmawcgB738
CmaCh06G009120	Watermelon (97103) v1	cmawmB786
CmaCh06G009120	Cucurbita pepo (Zucchini)	cmacpeB841
CmaCh06G009120	Cucurbita pepo (Zucchini)	cmacpeB855
CmaCh06G009120	Bottle gourd (USVL1VR-Ls)	cmalsiB766
CmaCh06G009120	Bottle gourd (USVL1VR-Ls)	cmalsiB753