Cp4.1LG01g25120 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g25120
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Description40S ribosomal protein S25, putative
LocationCp4.1LG01 : 18592621 .. 18593238 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATGTTTGTCTGGGAACTGTAATCACTCATCACTTGGTTTGCAGAAATGGAGCAAGGGCAAGCAAAAGGAGAAGGTGAACAACATGGTTTTGTTTGATCAGGGAACCTATGATAAGCTTCTTTCTGAAGTCCCCAAGTACAAGCTAATCACTCCTTCAATCCTTTCTGATAGAATGAGGGTACGCCTTGTCTTCCTTGTATCCATCCATGGCAATGCACTTAATACTTCAATTTGTTTGTTGTTCAACTGCAATATGTTGGTCGAGCAGCCCAACTCAATTCACATGGTTTGATTTGTTATAACCAATTTGAAAACCAACCCATAGACTTTGTTTTTTACTTAGTACACTACCAATGGACATGAAGTTTACAGTCAAGAAATCAGATTTAAAATTTTGTGTTGACTAGACCCTTTTGGTTCAGATTTAAAATTTGAAAACCAAGTGACTTTTTGTTTGCAATTCAAATAATGGCTCCTTTGTGTCATCTGCCATATTCAGATCAATGGTTCACTTGCCCGAAGAGCAATCAAGGATTTGATGGCTCGAGGTTCCATCAGAATGATCTCGGCTCATTCTAGTCAGGAGATATACACCAGAGCAACCAACACCTAA

mRNA sequence

ATGAAATGTTTGTCTGGGAACTGTAATCACTCATCACTTGGTTTGCAGAAATGGAGCAAGGGCAAGCAAAAGGAGAAGGTGAACAACATGGTTTTGTTTGATCAGGGAACCTATGATAAGCTTCTTTCTGAAGTCCCCAAGTACAAGCTAATCACTCCTTCAATCCTTTCTGATAGAATGAGGATCAATGGTTCACTTGCCCGAAGAGCAATCAAGGATTTGATGGCTCGAGGTTCCATCAGAATGATCTCGGCTCATTCTAGTCAGGAGATATACACCAGAGCAACCAACACCTAA

Coding sequence (CDS)

ATGAAATGTTTGTCTGGGAACTGTAATCACTCATCACTTGGTTTGCAGAAATGGAGCAAGGGCAAGCAAAAGGAGAAGGTGAACAACATGGTTTTGTTTGATCAGGGAACCTATGATAAGCTTCTTTCTGAAGTCCCCAAGTACAAGCTAATCACTCCTTCAATCCTTTCTGATAGAATGAGGATCAATGGTTCACTTGCCCGAAGAGCAATCAAGGATTTGATGGCTCGAGGTTCCATCAGAATGATCTCGGCTCATTCTAGTCAGGAGATATACACCAGAGCAACCAACACCTAA

Protein sequence

MKCLSGNCNHSSLGLQKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLMARGSIRMISAHSSQEIYTRATNT
Homology
[Close]
BLAST of Cp4.1LG01g25120 vs. Swiss-Prot
Match: RS252_ARATH (40S ribosomal protein S25-2 OS=Arabidopsis thaliana GN=RPS25B PE=2 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 3.4e-35
Identity = 73/83 (87.95%), Postives = 81/83 (97.59%), Query Frame = 1 

Query: 16  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLM 75
           +KWSKGKQKEKVNNMVLFDQGTYDKLL+E PK+KLITPSILSDRMRINGSLARRAI++LM
Sbjct: 26  KKWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELM 85

Query: 76  ARGSIRMISAHSSQEIYTRATNT 99
           A+G IRM+SAHSSQ+IYTRATNT
Sbjct: 86  AKGLIRMVSAHSSQQIYTRATNT 108

[Close]
BLAST of Cp4.1LG01g25120 vs. Swiss-Prot
Match: RS25_SOLLC (40S ribosomal protein S25 OS=Solanum lycopersicum GN=RPS25 PE=3 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.3e-34
Identity = 71/83 (85.54%), Postives = 81/83 (97.59%), Query Frame = 1 

Query: 16  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLM 75
           +KWSKGKQKEKVNNMVLFD+ TYDKLLSE PKYKLITPS+LSDR+RI+GSLAR+AI+DLM
Sbjct: 26  KKWSKGKQKEKVNNMVLFDKSTYDKLLSEAPKYKLITPSVLSDRLRISGSLARKAIRDLM 85

Query: 76  ARGSIRMISAHSSQEIYTRATNT 99
           ARGSIRM+SAH+SQ+IYTRATNT
Sbjct: 86  ARGSIRMVSAHASQQIYTRATNT 108

[Close]
BLAST of Cp4.1LG01g25120 vs. Swiss-Prot
Match: RS254_ARATH (40S ribosomal protein S25-4 OS=Arabidopsis thaliana GN=RPS25E PE=2 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 3.8e-34
Identity = 71/83 (85.54%), Postives = 80/83 (96.39%), Query Frame = 1 

Query: 16  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLM 75
           +KWSKGKQKEKVNNMVLFDQ TYDKLL+E PK+KLITPSILSDRMRINGSLARRAI++LM
Sbjct: 26  KKWSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELM 85

Query: 76  ARGSIRMISAHSSQEIYTRATNT 99
           A+G IRM++AHSSQ+IYTRATNT
Sbjct: 86  AKGVIRMVAAHSSQQIYTRATNT 108

[Close]
BLAST of Cp4.1LG01g25120 vs. Swiss-Prot
Match: RS253_ARATH (40S ribosomal protein S25-3 OS=Arabidopsis thaliana GN=RPS25D PE=3 SV=2)

HSP 1 Score: 143.7 bits (361), Expect = 1.1e-33
Identity = 70/82 (85.37%), Postives = 80/82 (97.56%), Query Frame = 1 

Query: 16  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLM 75
           +KWSKGKQKEKVNNMVLFDQ TYDKLLSE PK+KLITPSILSDR+RINGSLARRAI++LM
Sbjct: 26  KKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRELM 85

Query: 76  ARGSIRMISAHSSQEIYTRATN 98
           A+G+IRM+SAHSSQ+IYTRAT+
Sbjct: 86  AKGTIRMVSAHSSQQIYTRATH 107

[Close]
BLAST of Cp4.1LG01g25120 vs. Swiss-Prot
Match: RS251_ARATH (40S ribosomal protein S25-1 OS=Arabidopsis thaliana GN=RPS25A PE=3 SV=3)

HSP 1 Score: 136.3 bits (342), Expect = 1.7e-31
Identity = 66/81 (81.48%), Postives = 76/81 (93.83%), Query Frame = 1 

Query: 16  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLM 75
           +KWSKGKQKEKVNNMVLFDQ TYDKL+SE PK+KLITPSILSDR+RINGSLAR+AI+DLM
Sbjct: 26  KKWSKGKQKEKVNNMVLFDQATYDKLMSEAPKFKLITPSILSDRLRINGSLARKAIRDLM 85

Query: 76  ARGSIRMISAHSSQEIYTRAT 97
            +G+IRM+S HSSQ+I TRAT
Sbjct: 86  VKGTIRMVSTHSSQQINTRAT 106

[Close]
BLAST of Cp4.1LG01g25120 vs. TrEMBL
Match: A0A0A0KB40_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G045180 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 3.7e-36
Identity = 79/83 (95.18%), Postives = 83/83 (100.00%), Query Frame = 1 

Query: 16  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLM 75
           +KWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL+TPSILSDRMR+NGSLARRAIKDLM
Sbjct: 26  KKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRMRVNGSLARRAIKDLM 85

Query: 76  ARGSIRMISAHSSQEIYTRATNT 99
           ARGSIRMISAHSSQ+IYTRATNT
Sbjct: 86  ARGSIRMISAHSSQQIYTRATNT 108

[Close]
BLAST of Cp4.1LG01g25120 vs. TrEMBL
Match: A0A0D6R5H1_ARACU (Uncharacterized protein OS=Araucaria cunninghamii PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.1e-35
Identity = 79/83 (95.18%), Postives = 83/83 (100.00%), Query Frame = 1 

Query: 16  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLM 75
           +KWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDR+RINGSLAR+AIKDLM
Sbjct: 27  KKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRINGSLARKAIKDLM 86

Query: 76  ARGSIRMISAHSSQEIYTRATNT 99
           ARGSIRMISAHSSQ+IYTRATNT
Sbjct: 87  ARGSIRMISAHSSQQIYTRATNT 109

[Close]
BLAST of Cp4.1LG01g25120 vs. TrEMBL
Match: A0A0C9S5M4_9SPER (TSA: Wollemia nobilis Ref_Wollemi_Transcript_12659_740 transcribed RNA sequence OS=Wollemia nobilis PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.1e-35
Identity = 79/83 (95.18%), Postives = 83/83 (100.00%), Query Frame = 1 

Query: 16  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLM 75
           +KWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDR+RINGSLAR+AIKDLM
Sbjct: 27  KKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRINGSLARKAIKDLM 86

Query: 76  ARGSIRMISAHSSQEIYTRATNT 99
           ARGSIRMISAHSSQ+IYTRATNT
Sbjct: 87  ARGSIRMISAHSSQQIYTRATNT 109

[Close]
BLAST of Cp4.1LG01g25120 vs. TrEMBL
Match: B9SCV0_RICCO (40S ribosomal protein S25, putative OS=Ricinus communis GN=RCOM_1281730 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 5.3e-35
Identity = 78/83 (93.98%), Postives = 82/83 (98.80%), Query Frame = 1 

Query: 16  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLM 75
           +KWSKGKQKEKVNNMVLFDQ TYDKLLSEVPKYKLITPSILSDR+RINGSLARRAIKDLM
Sbjct: 26  KKWSKGKQKEKVNNMVLFDQATYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLM 85

Query: 76  ARGSIRMISAHSSQEIYTRATNT 99
           ARGSIRMISAH+SQ+IYTRATNT
Sbjct: 86  ARGSIRMISAHASQQIYTRATNT 108

[Close]
BLAST of Cp4.1LG01g25120 vs. TrEMBL
Match: F6GYW7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0147g00060 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 5.3e-35
Identity = 77/82 (93.90%), Postives = 82/82 (100.00%), Query Frame = 1 

Query: 16  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLM 75
           +KWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDR+RINGSLARRAIKDLM
Sbjct: 26  KKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLM 85

Query: 76  ARGSIRMISAHSSQEIYTRATN 98
           ARGSIRM+SAH+SQ+IYTRATN
Sbjct: 86  ARGSIRMVSAHASQQIYTRATN 107

[Close]
BLAST of Cp4.1LG01g25120 vs. TAIR10
Match: AT2G21580.1 (AT2G21580.1 Ribosomal protein S25 family protein)

HSP 1 Score: 148.7 bits (374), Expect = 1.9e-36
Identity = 73/83 (87.95%), Postives = 81/83 (97.59%), Query Frame = 1 

Query: 16  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLM 75
           +KWSKGKQKEKVNNMVLFDQGTYDKLL+E PK+KLITPSILSDRMRINGSLARRAI++LM
Sbjct: 26  KKWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELM 85

Query: 76  ARGSIRMISAHSSQEIYTRATNT 99
           A+G IRM+SAHSSQ+IYTRATNT
Sbjct: 86  AKGLIRMVSAHSSQQIYTRATNT 108

[Close]
BLAST of Cp4.1LG01g25120 vs. TAIR10
Match: AT4G39200.1 (AT4G39200.1 Ribosomal protein S25 family protein)

HSP 1 Score: 145.2 bits (365), Expect = 2.1e-35
Identity = 71/83 (85.54%), Postives = 80/83 (96.39%), Query Frame = 1 

Query: 16  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLM 75
           +KWSKGKQKEKVNNMVLFDQ TYDKLL+E PK+KLITPSILSDRMRINGSLARRAI++LM
Sbjct: 26  KKWSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELM 85

Query: 76  ARGSIRMISAHSSQEIYTRATNT 99
           A+G IRM++AHSSQ+IYTRATNT
Sbjct: 86  AKGVIRMVAAHSSQQIYTRATNT 108

[Close]
BLAST of Cp4.1LG01g25120 vs. TAIR10
Match: AT4G34555.1 (AT4G34555.1 Ribosomal protein S25 family protein)

HSP 1 Score: 143.7 bits (361), Expect = 6.2e-35
Identity = 70/82 (85.37%), Postives = 80/82 (97.56%), Query Frame = 1 

Query: 16  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLM 75
           +KWSKGKQKEKVNNMVLFDQ TYDKLLSE PK+KLITPSILSDR+RINGSLARRAI++LM
Sbjct: 26  KKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRELM 85

Query: 76  ARGSIRMISAHSSQEIYTRATN 98
           A+G+IRM+SAHSSQ+IYTRAT+
Sbjct: 86  AKGTIRMVSAHSSQQIYTRATH 107

[Close]
BLAST of Cp4.1LG01g25120 vs. TAIR10
Match: AT2G16360.1 (AT2G16360.1 Ribosomal protein S25 family protein)

HSP 1 Score: 131.0 bits (328), Expect = 4.1e-31
Identity = 65/81 (80.25%), Postives = 75/81 (92.59%), Query Frame = 1 

Query: 16  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLM 75
           +K SKGKQKEKVNNMVLFDQ TYDKL+SE PK+KLITPSILSDR+RINGSLAR+AI+DLM
Sbjct: 42  RKRSKGKQKEKVNNMVLFDQATYDKLMSEAPKFKLITPSILSDRLRINGSLARKAIRDLM 101

Query: 76  ARGSIRMISAHSSQEIYTRAT 97
            +G+IRM+S HSSQ+I TRAT
Sbjct: 102 VKGTIRMVSTHSSQQINTRAT 122

[Close]
BLAST of Cp4.1LG01g25120 vs. NCBI nr
Match: gi|449446287|ref|XP_004140903.1| (PREDICTED: 40S ribosomal protein S25-2 [Cucumis sativus])

HSP 1 Score: 158.7 bits (400), Expect = 5.2e-36
Identity = 79/83 (95.18%), Postives = 83/83 (100.00%), Query Frame = 1 

Query: 16  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLM 75
           +KWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL+TPSILSDRMR+NGSLARRAIKDLM
Sbjct: 26  KKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRMRVNGSLARRAIKDLM 85

Query: 76  ARGSIRMISAHSSQEIYTRATNT 99
           ARGSIRMISAHSSQ+IYTRATNT
Sbjct: 86  ARGSIRMISAHSSQQIYTRATNT 108

[Close]
BLAST of Cp4.1LG01g25120 vs. NCBI nr
Match: gi|659113490|ref|XP_008456601.1| (PREDICTED: 40S ribosomal protein S25-2-like [Cucumis melo])

HSP 1 Score: 157.9 bits (398), Expect = 8.9e-36
Identity = 79/83 (95.18%), Postives = 83/83 (100.00%), Query Frame = 1 

Query: 16  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLM 75
           +KWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL+TPSILSDR+RINGSLARRAIKDLM
Sbjct: 26  KKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLM 85

Query: 76  ARGSIRMISAHSSQEIYTRATNT 99
           ARGSIRMISAHSSQ+IYTRATNT
Sbjct: 86  ARGSIRMISAHSSQQIYTRATNT 108

[Close]
BLAST of Cp4.1LG01g25120 vs. NCBI nr
Match: gi|255565659|ref|XP_002523819.1| (PREDICTED: 40S ribosomal protein S25 [Ricinus communis])

HSP 1 Score: 154.8 bits (390), Expect = 7.6e-35
Identity = 78/83 (93.98%), Postives = 82/83 (98.80%), Query Frame = 1 

Query: 16  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLM 75
           +KWSKGKQKEKVNNMVLFDQ TYDKLLSEVPKYKLITPSILSDR+RINGSLARRAIKDLM
Sbjct: 26  KKWSKGKQKEKVNNMVLFDQATYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLM 85

Query: 76  ARGSIRMISAHSSQEIYTRATNT 99
           ARGSIRMISAH+SQ+IYTRATNT
Sbjct: 86  ARGSIRMISAHASQQIYTRATNT 108

[Close]
BLAST of Cp4.1LG01g25120 vs. NCBI nr
Match: gi|657997509|ref|XP_008391134.1| (PREDICTED: 40S ribosomal protein S25-like [Malus domestica])

HSP 1 Score: 154.8 bits (390), Expect = 7.6e-35
Identity = 77/83 (92.77%), Postives = 83/83 (100.00%), Query Frame = 1 

Query: 16  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLM 75
           +KWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDR+RINGSLARRAIKDLM
Sbjct: 26  KKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLM 85

Query: 76  ARGSIRMISAHSSQEIYTRATNT 99
           ARGSIR+I+AH+SQ+IYTRATNT
Sbjct: 86  ARGSIRLIAAHASQQIYTRATNT 108

[Close]
BLAST of Cp4.1LG01g25120 vs. NCBI nr
Match: gi|225450236|ref|XP_002267311.1| (PREDICTED: 40S ribosomal protein S25 [Vitis vinifera])

HSP 1 Score: 154.8 bits (390), Expect = 7.6e-35
Identity = 77/82 (93.90%), Postives = 82/82 (100.00%), Query Frame = 1 

Query: 16  QKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRMRINGSLARRAIKDLM 75
           +KWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDR+RINGSLARRAIKDLM
Sbjct: 26  KKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLM 85

Query: 76  ARGSIRMISAHSSQEIYTRATN 98
           ARGSIRM+SAH+SQ+IYTRATN
Sbjct: 86  ARGSIRMVSAHASQQIYTRATN 107

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g25120 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RS252_ARATH3.4e-3587.9540S ribosomal protein S25-2 OS=Arabidopsis thaliana GN=RPS25B PE=2 SV=1[more]
RS25_SOLLC1.3e-3485.5440S ribosomal protein S25 OS=Solanum lycopersicum GN=RPS25 PE=3 SV=1[more]
RS254_ARATH3.8e-3485.5440S ribosomal protein S25-4 OS=Arabidopsis thaliana GN=RPS25E PE=2 SV=1[more]
RS253_ARATH1.1e-3385.3740S ribosomal protein S25-3 OS=Arabidopsis thaliana GN=RPS25D PE=3 SV=2[more]
RS251_ARATH1.7e-3181.4840S ribosomal protein S25-1 OS=Arabidopsis thaliana GN=RPS25A PE=3 SV=3[more]
BLAST of Cp4.1LG01g25120 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KB40_CUCSA3.7e-3695.18Uncharacterized protein OS=Cucumis sativus GN=Csa_6G045180 PE=4 SV=1[more]
A0A0D6R5H1_ARACU1.1e-3595.18Uncharacterized protein OS=Araucaria cunninghamii PE=4 SV=1[more]
A0A0C9S5M4_9SPER1.1e-3595.18TSA: Wollemia nobilis Ref_Wollemi_Transcript_12659_740 transcribed RNA sequence ... [more]
B9SCV0_RICCO5.3e-3593.9840S ribosomal protein S25, putative OS=Ricinus communis GN=RCOM_1281730 PE=4 SV=... [more]
F6GYW7_VITVI5.3e-3593.90Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0147g00060 PE=4 SV=... [more]
BLAST of Cp4.1LG01g25120 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G21580.11.9e-3687.95 Ribosomal protein S25 family protein[more]
AT4G39200.12.1e-3585.54 Ribosomal protein S25 family protein[more]
AT4G34555.16.2e-3585.37 Ribosomal protein S25 family protein[more]
AT2G16360.14.1e-3180.25 Ribosomal protein S25 family protein[more]
BLAST of Cp4.1LG01g25120 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449446287|ref|XP_004140903.1|5.2e-3695.18PREDICTED: 40S ribosomal protein S25-2 [Cucumis sativus][more]
gi|659113490|ref|XP_008456601.1|8.9e-3695.18PREDICTED: 40S ribosomal protein S25-2-like [Cucumis melo][more]
gi|255565659|ref|XP_002523819.1|7.6e-3593.98PREDICTED: 40S ribosomal protein S25 [Ricinus communis][more]
gi|657997509|ref|XP_008391134.1|7.6e-3592.77PREDICTED: 40S ribosomal protein S25-like [Malus domestica][more]
gi|225450236|ref|XP_002267311.1|7.6e-3593.90PREDICTED: 40S ribosomal protein S25 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004977Ribosomal_S25
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005840 ribosome
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g25120.1Cp4.1LG01g25120.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004977Ribosomal protein S25PRODOMPD012268coord: 30..97
score: 3.0
IPR004977Ribosomal protein S25PANTHERPTHR12850FAMILY NOT NAMEDcoord: 17..98
score: 1.5
IPR004977Ribosomal protein S25PFAMPF03297Ribosomal_S25coord: 16..95
score: 2.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g25120Cucsa.364650Cucumber (Gy14) v1cgycpeB0961
Cp4.1LG01g25120CmoCh15G005300Cucurbita moschata (Rifu)cmocpeB280
Cp4.1LG01g25120CmoCh04G026370Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g25120Cla013693Watermelon (97103) v1cpewmB395
Cp4.1LG01g25120Csa6G045180Cucumber (Chinese Long) v2cpecuB459
Cp4.1LG01g25120MELO3C019896Melon (DHL92) v3.5.1cpemeB396
Cp4.1LG01g25120ClCG08G008280Watermelon (Charleston Gray)cpewcgB417
Cp4.1LG01g25120CSPI06G03970Wild cucumber (PI 183967)cpecpiB460
Cp4.1LG01g25120Lsi08G006460Bottle gourd (USVL1VR-Ls)cpelsiB382
Cp4.1LG01g25120MELO3C019896.2Melon (DHL92) v3.6.1cpemedB460
Cp4.1LG01g25120CsaV3_6G004250Cucumber (Chinese Long) v3cpecucB0568
Cp4.1LG01g25120Bhi04G001322Wax gourdcpewgoB0526
Cp4.1LG01g25120CsGy6G003940Cucumber (Gy14) v2cgybcpeB797
Cp4.1LG01g25120Carg01677Silver-seed gourdcarcpeB1158
Cp4.1LG01g25120Carg04622Silver-seed gourdcarcpeB0965
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG01g25120Cp4.1LG09g03710Cucurbita pepo (Zucchini)cpecpeB038
Cp4.1LG01g25120Cp4.1LG13g10590Cucurbita pepo (Zucchini)cpecpeB199
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g25120Cucurbita pepo (Zucchini)cpecpeB379
Cp4.1LG01g25120Cucurbita maxima (Rimu)cmacpeB318
Cp4.1LG01g25120Cucurbita maxima (Rimu)cmacpeB721
Cp4.1LG01g25120Cucurbita maxima (Rimu)cmacpeB734
Cp4.1LG01g25120Cucurbita moschata (Rifu)cmocpeB401
Cp4.1LG01g25120Cucurbita moschata (Rifu)cmocpeB687
Cp4.1LG01g25120Bottle gourd (USVL1VR-Ls)cpelsiB365
Cp4.1LG01g25120Watermelon (Charleston Gray)cpewcgB398
Cp4.1LG01g25120Watermelon (97103) v1cpewmB438
Cp4.1LG01g25120Cucumber (Gy14) v2cgybcpeB635
Cp4.1LG01g25120Silver-seed gourdcarcpeB1176
Cp4.1LG01g25120Wax gourdcpewgoB0560