CmoCh15G005300 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh15G005300
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	40S ribosomal protein S25, putative
Location	Cmo_Chr15 : 2496463 .. 2497979 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGAATATCAGACTTTCGCGCGGTCCTATAAATTCTTCCCATTCAGACCAATTCCCTCCGTTCTATTCCGATCGAAACCTCTGCAACTCCTTCCCTCAAACCCTAGGAATCAAATCTCATGGTGAGTTGCTATCTGCATTTTCTTGTTGATTCATCTCCAAATTATTCTTTCTTTCTTTATTCCTTTTCATTTTCTTCTGGAACTTCTGTACTGATTCTACTTGTTGTGGTGTTTGTTGTTGTTTTTGTTTTGTATCGTTTGAATCGTAGGCACCAAAGAAGGATAAGGCTCCTCCACCGTCCTCCAAGCCCGCTAAATCTGGTGGAGGAAAGCAGAAGAAGAAGGTAAGCTTCTTAGAATTAAATACCGCTAGCGGTTTCATGATTCGTATGCCGATGTATGCCTAGCCCTATCGTTCAAGAAGATCATTTAATAAGATTTAGTTCTTTTAATTTCCTCTGGTTTTACTGCATTGCTTAGACGGAGTGTTATGTGTTTTTCTGAAGTTAGTATTGCTGAATTTTATTTCAACACTTTTGTAATTAGGTCTTCATACATTACGTAGCATATCCTTCTTCACCGTACAGTGTTCACAAAACTAGCTTAAGGCGTTAAATATGGGGCAATCGGAAAGTGATTTTTCATTCGATTAGGAAGAAAATTCAAGGCCTTCAAAAATACAATGAGATGTTTGGAATCCAGTGAAGTTTGTTGAATAGGAGGATCACTATGATTTTCTTTTTGGTATTAAGCTTTATATGGTGGTTATCAATTGGATTGCAGAAATGGAGCAAAGGCAAGCAAAAGGAGAAGGTGAACAACATGGTTTTATTTGATCAGGCAAGTTATGATAAGCTCCTTTCTGAAGCTCCCAAGTTCAAGCTGGTCACTCCGTCTATCCTTTCTGATAGGTTGAGGGTATGTCTTTTCTTCCTTTTACTCATCTGTGGTTTTGCCGGTTGTCTGCAATCTTTTTTTTTGTTCTTGGCCTGAATATGTTGAGAAGAACTGGGCATTTATCCTAAACCCATTTGGTGTTTCAAACAATTAAAATACCCAACCCACACACTTAGTCTACTTATGAACATGAAATTCTTAGTTAAGGAGGAATCAGATTGGCAGGGTACTGAAATTTATGCAGGCCTTTTTGACTAATACAAGTTTCTTATAGATCAATGGGTCGCTCGCACGAAGAGCAATTAAGGATTTGATGGCACGGGGTTCCATCAGGATGATATCGTCTCACTCCAGTCAGCAGATCTATACAAGAGCAACCAACGCCTAAGGCTATGGCACGGGGTTCATATGAACTCTTTCCTGGAAGGCCATGGTTATGTAGTTCCCTTCCCCATTTTGCAATTCCGAATTTTGTCCATTGATGAAATTATCTTTTAGTCCGTTCCAATGGCTGGATGATCTTTTAATGTGATGTGGTCTTTTATTTGTTAATCAGGTTTTTCGCGATGTGGTCTTTATTCGTTGATTGCGGGTAGTTATGTTTTTTTTTTTTTTCTAG

mRNA sequence

TGGAATATCAGACTTTCGCGCGGTCCTATAAATTCTTCCCATTCAGACCAATTCCCTCCGTTCTATTCCGATCGAAACCTCTGCAACTCCTTCCCTCAAACCCTAGGAATCAAATCTCATGGCACCAAAGAAGGATAAGGCTCCTCCACCGTCCTCCAAGCCCGCTAAATCTGGTGGAGGAAAGCAGAAGAAGAAGAAATGGAGCAAAGGCAAGCAAAAGGAGAAGGTGAACAACATGGTTTTATTTGATCAGGCAAGTTATGATAAGCTCCTTTCTGAAGCTCCCAAGTTCAAGCTGGTCACTCCGTCTATCCTTTCTGATAGGTTGAGGATCAATGGGTCGCTCGCACGAAGAGCAATTAAGGATTTGATGGCACGGGGTTCCATCAGGATGATATCGTCTCACTCCAGTCAGCAGATCTATACAAGAGCAACCAACGCCTAAGGCTATGGCACGGGGTTCATATGAACTCTTTCCTGGAAGGCCATGGTTATGTAGTTCCCTTCCCCATTTTGCAATTCCGAATTTTGTCCATTGATGAAATTATCTTTTAGTCCGTTCCAATGGCTGGATGATCTTTTAATGTGATGTGGTCTTTTATTTGTTAATCAGGTTTTTCGCGATGTGGTCTTTATTCGTTGATTGCGGGTAGTTATGTTTTTTTTTTTTTTCTAG

Coding sequence (CDS)

ATGGCACCAAAGAAGGATAAGGCTCCTCCACCGTCCTCCAAGCCCGCTAAATCTGGTGGAGGAAAGCAGAAGAAGAAGAAATGGAGCAAAGGCAAGCAAAAGGAGAAGGTGAACAACATGGTTTTATTTGATCAGGCAAGTTATGATAAGCTCCTTTCTGAAGCTCCCAAGTTCAAGCTGGTCACTCCGTCTATCCTTTCTGATAGGTTGAGGATCAATGGGTCGCTCGCACGAAGAGCAATTAAGGATTTGATGGCACGGGGTTCCATCAGGATGATATCGTCTCACTCCAGTCAGCAGATCTATACAAGAGCAACCAACGCCTAA

Homology

[Close]

BLAST of CmoCh15G005300 vs. Swiss-Prot
Match: RS253_ARATH (40S ribosomal protein S25-3 OS=Arabidopsis thaliana GN=RPS25D PE=3 SV=2)

HSP 1 Score: 186.4 bits (472), Expect = 1.6e-46
Identity = 97/107 (90.65%), Postives = 106/107 (99.07%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQASYDKLLSEAPKFKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQA+YDKLLSEAPKFKL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATN 108
           +TPSILSDRLRINGSLARRAI++LMA+G+IRM+S+HSSQQIYTRAT+
Sbjct: 61  ITPSILSDRLRINGSLARRAIRELMAKGTIRMVSAHSSQQIYTRATH 107

[Close]

BLAST of CmoCh15G005300 vs. Swiss-Prot
Match: RS254_ARATH (40S ribosomal protein S25-4 OS=Arabidopsis thaliana GN=RPS25E PE=2 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 8.0e-46
Identity = 95/107 (88.79%), Postives = 105/107 (98.13%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQASYDKLLSEAPKFKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQA+YDKLL+EAPKFKL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATN 108
           +TPSILSDR+RINGSLARRAI++LMA+G IRM+++HSSQQIYTRATN
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQQIYTRATN 107

[Close]

BLAST of CmoCh15G005300 vs. Swiss-Prot
Match: RS252_ARATH (40S ribosomal protein S25-2 OS=Arabidopsis thaliana GN=RPS25B PE=2 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.0e-45
Identity = 95/107 (88.79%), Postives = 104/107 (97.20%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQASYDKLLSEAPKFKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ +YDKLL+EAPKFKL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATN 108
           +TPSILSDR+RINGSLARRAI++LMA+G IRM+S+HSSQQIYTRATN
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAHSSQQIYTRATN 107

[Close]

BLAST of CmoCh15G005300 vs. Swiss-Prot
Match: RS25_SOLLC (40S ribosomal protein S25 OS=Solanum lycopersicum GN=RPS25 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 8.9e-45
Identity = 93/107 (86.92%), Postives = 106/107 (99.07%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQASYDKLLSEAPKFKL 60
           MAPKK +APPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFD+++YDKLLSEAPK+KL
Sbjct: 1   MAPKKAQAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDKSTYDKLLSEAPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATN 108
           +TPS+LSDRLRI+GSLAR+AI+DLMARGSIRM+S+H+SQQIYTRATN
Sbjct: 61  ITPSVLSDRLRISGSLARKAIRDLMARGSIRMVSAHASQQIYTRATN 107

[Close]

BLAST of CmoCh15G005300 vs. Swiss-Prot
Match: RS251_ARATH (40S ribosomal protein S25-1 OS=Arabidopsis thaliana GN=RPS25A PE=3 SV=3)

HSP 1 Score: 180.6 bits (457), Expect = 8.9e-45
Identity = 94/106 (88.68%), Postives = 103/106 (97.17%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQASYDKLLSEAPKFKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQA+YDKL+SEAPKFKL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLMSEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRAT 107
           +TPSILSDRLRINGSLAR+AI+DLM +G+IRM+S+HSSQQI TRAT
Sbjct: 61  ITPSILSDRLRINGSLARKAIRDLMVKGTIRMVSTHSSQQINTRAT 106

[Close]

BLAST of CmoCh15G005300 vs. TrEMBL
Match: V4RSB2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029626mg PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 1.9e-46
Identity = 102/107 (95.33%), Postives = 107/107 (100.00%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQASYDKLLSEAPKFKL 60
           MAPKKDKAPPP+SKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQA+YDKLLSEAPKFKL
Sbjct: 1   MAPKKDKAPPPASKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATN 108
           +TPSILSDRLRINGSLARRAIKDLMARGSIRMIS+H+SQQIYTRATN
Sbjct: 61  ITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRATN 107

[Close]

BLAST of CmoCh15G005300 vs. TrEMBL
Match: A9NKH7_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 1.9e-46
Identity = 102/107 (95.33%), Postives = 107/107 (100.00%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQASYDKLLSEAPKFKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQA+YDKLLSEAPK+KL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATN 108
           +TPSILSDRLRINGSLAR+AIKDLMARGSIRMIS+HSSQQIYTRATN
Sbjct: 61  ITPSILSDRLRINGSLARKAIKDLMARGSIRMISAHSSQQIYTRATN 107

[Close]

BLAST of CmoCh15G005300 vs. TrEMBL
Match: A0A067ESG8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033931mg PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 1.9e-46
Identity = 102/107 (95.33%), Postives = 107/107 (100.00%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQASYDKLLSEAPKFKL 60
           MAPKKDKAPPP+SKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQA+YDKLLSEAPKFKL
Sbjct: 1   MAPKKDKAPPPASKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATN 108
           +TPSILSDRLRINGSLARRAIKDLMARGSIRMIS+H+SQQIYTRATN
Sbjct: 61  ITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRATN 107

[Close]

BLAST of CmoCh15G005300 vs. TrEMBL
Match: A0A067JDX0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03002 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 5.6e-46
Identity = 101/107 (94.39%), Postives = 106/107 (99.07%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQASYDKLLSEAPKFKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNM+LFDQA+YDKLLSE PK+KL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMILFDQATYDKLLSEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATN 108
           VTPSILSDRLRINGSLARRAIKDLMARGSIRMIS+H+SQQIYTRATN
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRATN 107

[Close]

BLAST of CmoCh15G005300 vs. TrEMBL
Match: B9SCV0_RICCO (40S ribosomal protein S25, putative OS=Ricinus communis GN=RCOM_1281730 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 5.6e-46
Identity = 101/107 (94.39%), Postives = 106/107 (99.07%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQASYDKLLSEAPKFKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQA+YDKLLSE PK+KL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATN 108
           +TPSILSDRLRINGSLARRAIKDLMARGSIRMIS+H+SQQIYTRATN
Sbjct: 61  ITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRATN 107

[Close]

BLAST of CmoCh15G005300 vs. TAIR10
Match: AT4G34555.1 (AT4G34555.1 Ribosomal protein S25 family protein)

HSP 1 Score: 186.4 bits (472), Expect = 9.1e-48
Identity = 97/107 (90.65%), Postives = 106/107 (99.07%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQASYDKLLSEAPKFKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQA+YDKLLSEAPKFKL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATN 108
           +TPSILSDRLRINGSLARRAI++LMA+G+IRM+S+HSSQQIYTRAT+
Sbjct: 61  ITPSILSDRLRINGSLARRAIRELMAKGTIRMVSAHSSQQIYTRATH 107

[Close]

BLAST of CmoCh15G005300 vs. TAIR10
Match: AT4G39200.1 (AT4G39200.1 Ribosomal protein S25 family protein)

HSP 1 Score: 184.1 bits (466), Expect = 4.5e-47
Identity = 95/107 (88.79%), Postives = 105/107 (98.13%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQASYDKLLSEAPKFKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQA+YDKLL+EAPKFKL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATN 108
           +TPSILSDR+RINGSLARRAI++LMA+G IRM+++HSSQQIYTRATN
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQQIYTRATN 107

[Close]

BLAST of CmoCh15G005300 vs. TAIR10
Match: AT2G21580.1 (AT2G21580.1 Ribosomal protein S25 family protein)

HSP 1 Score: 183.7 bits (465), Expect = 5.9e-47
Identity = 95/107 (88.79%), Postives = 104/107 (97.20%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQASYDKLLSEAPKFKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ +YDKLL+EAPKFKL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATN 108
           +TPSILSDR+RINGSLARRAI++LMA+G IRM+S+HSSQQIYTRATN
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAHSSQQIYTRATN 107

[Close]

BLAST of CmoCh15G005300 vs. TAIR10
Match: AT2G16360.1 (AT2G16360.1 Ribosomal protein S25 family protein)

HSP 1 Score: 132.5 bits (332), Expect = 1.6e-31
Identity = 68/83 (81.93%), Postives = 79/83 (95.18%), Query Frame = 1


Query: 24  KKKKWSKGKQKEKVNNMVLFDQASYDKLLSEAPKFKLVTPSILSDRLRINGSLARRAIKD 83
           + +K SKGKQKEKVNNMVLFDQA+YDKL+SEAPKFKL+TPSILSDRLRINGSLAR+AI+D
Sbjct: 40  ESRKRSKGKQKEKVNNMVLFDQATYDKLMSEAPKFKLITPSILSDRLRINGSLARKAIRD 99

Query: 84  LMARGSIRMISSHSSQQIYTRAT 107
           LM +G+IRM+S+HSSQQI TRAT
Sbjct: 100 LMVKGTIRMVSTHSSQQINTRAT 122

[Close]

BLAST of CmoCh15G005300 vs. NCBI nr
Match: gi|567863138|ref|XP_006424223.1| (hypothetical protein CICLE_v10029626mg [Citrus clementina])

HSP 1 Score: 193.0 bits (489), Expect = 2.8e-46
Identity = 102/107 (95.33%), Postives = 107/107 (100.00%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQASYDKLLSEAPKFKL 60
           MAPKKDKAPPP+SKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQA+YDKLLSEAPKFKL
Sbjct: 1   MAPKKDKAPPPASKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATN 108
           +TPSILSDRLRINGSLARRAIKDLMARGSIRMIS+H+SQQIYTRATN
Sbjct: 61  ITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRATN 107

[Close]

BLAST of CmoCh15G005300 vs. NCBI nr
Match: gi|116779097|gb|ABK21138.1| (unknown [Picea sitchensis])

HSP 1 Score: 193.0 bits (489), Expect = 2.8e-46
Identity = 102/107 (95.33%), Postives = 107/107 (100.00%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQASYDKLLSEAPKFKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQA+YDKLLSEAPK+KL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATN 108
           +TPSILSDRLRINGSLAR+AIKDLMARGSIRMIS+HSSQQIYTRATN
Sbjct: 61  ITPSILSDRLRINGSLARKAIKDLMARGSIRMISAHSSQQIYTRATN 107

[Close]

BLAST of CmoCh15G005300 vs. NCBI nr
Match: gi|659083221|ref|XP_008442240.1| (PREDICTED: 40S ribosomal protein S25-2 [Cucumis melo])

HSP 1 Score: 192.6 bits (488), Expect = 3.6e-46
Identity = 102/107 (95.33%), Postives = 106/107 (99.07%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQASYDKLLSEAPKFKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ +YDKLLSEAPKFKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATN 108
           +TPSILSDRLRINGSLARRAIKDLMARGSIR+IS+HSSQQIYTRATN
Sbjct: 61  ITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATN 107

[Close]

BLAST of CmoCh15G005300 vs. NCBI nr
Match: gi|470106618|ref|XP_004289660.1| (PREDICTED: 40S ribosomal protein S25 [Fragaria vesca subsp. vesca])

HSP 1 Score: 192.2 bits (487), Expect = 4.7e-46
Identity = 101/107 (94.39%), Postives = 107/107 (100.00%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQASYDKLLSEAPKFKL 60
           MAPKK+KAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQA+YDKLLSEAPKFKL
Sbjct: 1   MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATN 108
           +TPSILSDRLRINGSLARRAIKDLMARGSIRM+S+H+SQQIYTRATN
Sbjct: 61  ITPSILSDRLRINGSLARRAIKDLMARGSIRMVSAHASQQIYTRATN 107

[Close]

BLAST of CmoCh15G005300 vs. NCBI nr
Match: gi|802774697|ref|XP_012090801.1| (PREDICTED: 40S ribosomal protein S25 [Jatropha curcas])

HSP 1 Score: 191.4 bits (485), Expect = 8.0e-46
Identity = 101/107 (94.39%), Postives = 106/107 (99.07%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQASYDKLLSEAPKFKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNM+LFDQA+YDKLLSE PK+KL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMILFDQATYDKLLSEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATN 108
           VTPSILSDRLRINGSLARRAIKDLMARGSIRMIS+H+SQQIYTRATN
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRATN 107

The following BLAST results are available for this feature:

BLAST of CmoCh15G005300 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS253_ARATH	1.6e-46	90.65	40S ribosomal protein S25-3 OS=Arabidopsis thaliana GN=RPS25D PE=3 SV=2	[more]
RS254_ARATH	8.0e-46	88.79	40S ribosomal protein S25-4 OS=Arabidopsis thaliana GN=RPS25E PE=2 SV=1	[more]
RS252_ARATH	1.0e-45	88.79	40S ribosomal protein S25-2 OS=Arabidopsis thaliana GN=RPS25B PE=2 SV=1	[more]
RS25_SOLLC	8.9e-45	86.92	40S ribosomal protein S25 OS=Solanum lycopersicum GN=RPS25 PE=3 SV=1	[more]
RS251_ARATH	8.9e-45	88.68	40S ribosomal protein S25-1 OS=Arabidopsis thaliana GN=RPS25A PE=3 SV=3	[more]

BLAST of CmoCh15G005300 vs. TrEMBL


Match Name	E-value	Identity	Description
V4RSB2_9ROSI	1.9e-46	95.33	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029626mg PE=4 SV=1	[more]
A9NKH7_PICSI	1.9e-46	95.33	Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1	[more]
A0A067ESG8_CITSI	1.9e-46	95.33	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033931mg PE=4 SV=1	[more]
A0A067JDX0_JATCU	5.6e-46	94.39	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03002 PE=4 SV=1	[more]
B9SCV0_RICCO	5.6e-46	94.39	40S ribosomal protein S25, putative OS=Ricinus communis GN=RCOM_1281730 PE=4 SV=...	[more]

BLAST of CmoCh15G005300 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G34555.1	9.1e-48	90.65	Ribosomal protein S25 family protein	[more]
AT4G39200.1	4.5e-47	88.79	Ribosomal protein S25 family protein	[more]
AT2G21580.1	5.9e-47	88.79	Ribosomal protein S25 family protein	[more]
AT2G16360.1	1.6e-31	81.93	Ribosomal protein S25 family protein	[more]

BLAST of CmoCh15G005300 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|567863138\|ref\|XP_006424223.1\|	2.8e-46	95.33	hypothetical protein CICLE_v10029626mg [Citrus clementina]	[more]
gi\|116779097\|gb\|ABK21138.1\|	2.8e-46	95.33	unknown [Picea sitchensis]	[more]
gi\|659083221\|ref\|XP_008442240.1\|	3.6e-46	95.33	PREDICTED: 40S ribosomal protein S25-2 [Cucumis melo]	[more]
gi\|470106618\|ref\|XP_004289660.1\|	4.7e-46	94.39	PREDICTED: 40S ribosomal protein S25 [Fragaria vesca subsp. vesca]	[more]
gi\|802774697\|ref\|XP_012090801.1\|	8.0e-46	94.39	PREDICTED: 40S ribosomal protein S25 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004977	Ribosomal_S25

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G005300.1	CmoCh15G005300.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004977	Ribosomal protein S25	PRODOM	PD012268		coord: 40..108 score: 3.0
IPR004977	Ribosomal protein S25	PANTHER	PTHR12850	FAMILY NOT NAMED	coord: 5..108 score: 1.5
IPR004977	Ribosomal protein S25	PFAM	PF03297	Ribosomal_S25	coord: 8..105 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh15G005300	Cucsa.364650	Cucumber (Gy14) v1	cgycmoB0996
CmoCh15G005300	CmaCh04G025180	Cucurbita maxima (Rimu)	cmacmoB693
CmoCh15G005300	Cla013693	Watermelon (97103) v1	cmowmB248
CmoCh15G005300	Csa6G045180	Cucumber (Chinese Long) v2	cmocuB297
CmoCh15G005300	MELO3C019896	Melon (DHL92) v3.5.1	cmomeB262
CmoCh15G005300	ClCG08G008280	Watermelon (Charleston Gray)	cmowcgB263
CmoCh15G005300	CSPI06G03970	Wild cucumber (PI 183967)	cmocpiB306
CmoCh15G005300	Lsi08G006460	Bottle gourd (USVL1VR-Ls)	cmolsiB282
CmoCh15G005300	Cp4.1LG01g25120	Cucurbita pepo (Zucchini)	cmocpeB280
CmoCh15G005300	MELO3C019896.2	Melon (DHL92) v3.6.1	cmomedB297
CmoCh15G005300	CsaV3_6G004250	Cucumber (Chinese Long) v3	cmocucB0359
CmoCh15G005300	Cla97C08G151020	Watermelon (97103) v2	cmowmbB300
CmoCh15G005300	Bhi04G001322	Wax gourd	cmowgoB0393
CmoCh15G005300	CsGy6G003940	Cucumber (Gy14) v2	cgybcmoB721
CmoCh15G005300	Carg01677	Silver-seed gourd	carcmoB1118
CmoCh15G005300	Carg04622	Silver-seed gourd	carcmoB0936

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh15G005300	CmoCh04G026370	Cucurbita moschata (Rifu)	cmocmoB262

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh15G005300	Cucurbita maxima (Rimu)	cmacmoB287
CmoCh15G005300	Cucurbita pepo (Zucchini)	cmocpeB268