Csa6G045180 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G045180
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	40S ribosomal protein S25, putative; contains IPR004977 (Ribosomal protein S25)
Location	Chr6 : 3662119 .. 3663626 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTCCCTTCCAGCCGAAGCCCTTGGAACTCTTCACTCAAACCCTAGAAACCAAATCTCATGGTGAGTTTCTTTCCTCTTGCCGATTCGATGAACTTGTTCTTCCCTTTGATTCTTCTTTCGTCTTTGGAACTTCCGGTGTACTGATTCTACATGACGTGATATCTTTTGTTGTCTTCGTTTTGAATCTTAGGCGCCGAAGAAGGACAAGGCTCCTCCACCGTCCTCCAAACCTGCTAAATCTGGTGGAGGAAAGCAGAAGAAGAAGGTAAGCTTTTTAAATTTAAGTTCTGCTAGCTGTTATATTATTAGTATGTTGATACTTGTTTAATCTCATCGTTCAGGATCATTAGATAAGATTTAGTCGTTTTAATTTCTTCTTGTTGATAGCATTAAGTGCTCTTTTCGAAGTTTGCAGCGTTGTACTTTTTTTCGATACTGGAATTTGGAATTATCTTTAGTAATTTGATCTTCTTACGTCGTGTAGCATTTCGTTTTTTCGTCATACTGATAACGAGATAGTGACGTTTGTATTTGATTAGAATTGGAATGAAAGGACGATAAAAACCAGTTAGGATAGGGACCCTAAACCTTGAAAAATACTATGAGATTTTTTAAGGATGGCGATGTTTATTGAGTTTGAGGAAGAGTTTGATTTTTGGTATTCATTGTAGTATGGCCATTGTTATTTTACATGATCAGTATCACTTGGTTTGCAGAAATGGAGCAAGGGTAAGCAAAAGGAGAAGGTGAACAACATGGTTTTGTTTGATCAGGGAACTTATGATAAGCTCCTTTCTGAAGTTCCCAAGTACAAGCTAGTCACTCCGTCTATCCTTTCTGATAGAATGAGGGTATGTCTTTTTCTTCTTTTTCTATCCATCAATTTCCCAATTTTATTGAATTATTTTGTTGTTCTTGTTTAGAAAAAGTACAAATCTGCTTTTGTTTACCAAATGACTGACTGATTGATTTGTTACTAATTGCACCCTCTATAGCAATTTACTAATGGTTTCCTTTGCCATGTGCAATTACCAGGTTAATGGATCGCTAGCAAGAAGAGCAATTAAGGATTTGATGGCTAGAGGTTCCATCAGAATGATATCAGCTCACTCGAGTCAGCAGATCTACACCAGAGCAACCAACACCTAAGGACAACAATTCATGTCACTTATGCCCGAAAGGGTATATATGATATGTAGTTGCCTTTCCATTTTGCAATTCCAAATTTTGTTGAGTGATCAAATGAACTCTAAATGTGACGTTTTTAATTTGTTTACGTTGCGGGTCTTGACTTGTTTGATGAATTGTGTCACATTAGCTGGTATTTGCCTTTTCTTTTCTACTGCCAAATACTAACAATAATGTTTGTATGTAGAATCTCGTTCTAGATGTAAGTTGGTAAATTAATGTGGCTCTGACATTAGCGTTGTTTGAACAATTCTTGGATTTCGTCTCACTATGTTGAGAAAAACAAGATGATTTCAGGGTCAGGTTTAATCTAAAATC

mRNA sequence

ATGGCGCCGAAGAAGGACAAGGCTCCTCCACCGTCCTCCAAACCTGCTAAATCTGGTGGAGGAAAGCAGAAGAAGAAGAAATGGAGCAAGGGTAAGCAAAAGGAGAAGGTGAACAACATGGTTTTGTTTGATCAGGGAACTTATGATAAGCTCCTTTCTGAAGTTCCCAAGTACAAGCTAGTCACTCCGTCTATCCTTTCTGATAGAATGAGGGTTAATGGATCGCTAGCAAGAAGAGCAATTAAGGATTTGATGGCTAGAGGTTCCATCAGAATGATATCAGCTCACTCGAGTCAGCAGATCTACACCAGAGCAACCAACACCTAA

Coding sequence (CDS)

ATGGCGCCGAAGAAGGACAAGGCTCCTCCACCGTCCTCCAAACCTGCTAAATCTGGTGGAGGAAAGCAGAAGAAGAAGAAATGGAGCAAGGGTAAGCAAAAGGAGAAGGTGAACAACATGGTTTTGTTTGATCAGGGAACTTATGATAAGCTCCTTTCTGAAGTTCCCAAGTACAAGCTAGTCACTCCGTCTATCCTTTCTGATAGAATGAGGGTTAATGGATCGCTAGCAAGAAGAGCAATTAAGGATTTGATGGCTAGAGGTTCCATCAGAATGATATCAGCTCACTCGAGTCAGCAGATCTACACCAGAGCAACCAACACCTAA

Protein sequence

MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT*

Homology

[Close]

BLAST of Csa6G045180 vs. Swiss-Prot
Match: RS252_ARATH (40S ribosomal protein S25-2 OS=Arabidopsis thaliana GN=RPS25B PE=2 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 1.7e-51
Identity = 97/108 (89.81%), Postives = 103/108 (95.37%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLL+E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKL 60

Query: 61  VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 109
           +TPSILSDRMR+NGSLARRAI++LMA+G IRM+SAHSSQQIYTRATNT
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAHSSQQIYTRATNT 108

[Close]

BLAST of Csa6G045180 vs. Swiss-Prot
Match: RS254_ARATH (40S ribosomal protein S25-4 OS=Arabidopsis thaliana GN=RPS25E PE=2 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 1.9e-50
Identity = 95/108 (87.96%), Postives = 102/108 (94.44%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLL+E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKL 60

Query: 61  VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 109
           +TPSILSDRMR+NGSLARRAI++LMA+G IRM++AHSSQQIYTRATNT
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQQIYTRATNT 108

[Close]

BLAST of Csa6G045180 vs. Swiss-Prot
Match: RS25_SOLLC (40S ribosomal protein S25 OS=Solanum lycopersicum GN=RPS25 PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 5.4e-50
Identity = 94/108 (87.04%), Postives = 103/108 (95.37%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60
           MAPKK +APPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFD+ TYDKLLSE PKYKL
Sbjct: 1   MAPKKAQAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDKSTYDKLLSEAPKYKL 60

Query: 61  VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 109
           +TPS+LSDR+R++GSLAR+AI+DLMARGSIRM+SAH+SQQIYTRATNT
Sbjct: 61  ITPSVLSDRLRISGSLARKAIRDLMARGSIRMVSAHASQQIYTRATNT 108

[Close]

BLAST of Csa6G045180 vs. Swiss-Prot
Match: RS253_ARATH (40S ribosomal protein S25-3 OS=Arabidopsis thaliana GN=RPS25D PE=3 SV=2)

HSP 1 Score: 198.0 bits (502), Expect = 5.4e-50
Identity = 94/107 (87.85%), Postives = 102/107 (95.33%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLLSE PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKL 60

Query: 61  VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATN 108
           +TPSILSDR+R+NGSLARRAI++LMA+G+IRM+SAHSSQQIYTRAT+
Sbjct: 61  ITPSILSDRLRINGSLARRAIRELMAKGTIRMVSAHSSQQIYTRATH 107

[Close]

BLAST of Csa6G045180 vs. Swiss-Prot
Match: RS251_ARATH (40S ribosomal protein S25-1 OS=Arabidopsis thaliana GN=RPS25A PE=3 SV=3)

HSP 1 Score: 190.7 bits (483), Expect = 8.7e-48
Identity = 90/106 (84.91%), Postives = 98/106 (92.45%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKL+SE PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLMSEAPKFKL 60

Query: 61  VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRAT 107
           +TPSILSDR+R+NGSLAR+AI+DLM +G+IRM+S HSSQQI TRAT
Sbjct: 61  ITPSILSDRLRINGSLARKAIRDLMVKGTIRMVSTHSSQQINTRAT 106

[Close]

BLAST of Csa6G045180 vs. TrEMBL
Match: A0A0A0KB40_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G045180 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 2.1e-53
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60

Query: 61  VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 109
           VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT
Sbjct: 61  VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 108

[Close]

BLAST of Csa6G045180 vs. TrEMBL
Match: A0A067JTK0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21007 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 6.9e-52
Identity = 104/108 (96.30%), Postives = 107/108 (99.07%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNM+LFDQ TYDKLLSEVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMILFDQATYDKLLSEVPKYKL 60

Query: 61  VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 109
           VTPSILSDR+RVNGSLARRAIKDLMARGSIRMISAH+SQQIYTRATNT
Sbjct: 61  VTPSILSDRLRVNGSLARRAIKDLMARGSIRMISAHASQQIYTRATNT 108

[Close]

BLAST of Csa6G045180 vs. TrEMBL
Match: A0A067JDX0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03002 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 9.0e-52
Identity = 103/108 (95.37%), Postives = 107/108 (99.07%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNM+LFDQ TYDKLLSEVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMILFDQATYDKLLSEVPKYKL 60

Query: 61  VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 109
           VTPSILSDR+R+NGSLARRAIKDLMARGSIRMISAH+SQQIYTRATNT
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRATNT 108

[Close]

BLAST of Csa6G045180 vs. TrEMBL
Match: B9SCV0_RICCO (40S ribosomal protein S25, putative OS=Ricinus communis GN=RCOM_1281730 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 9.0e-52
Identity = 103/108 (95.37%), Postives = 107/108 (99.07%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLLSEVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEVPKYKL 60

Query: 61  VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 109
           +TPSILSDR+R+NGSLARRAIKDLMARGSIRMISAH+SQQIYTRATNT
Sbjct: 61  ITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRATNT 108

[Close]

BLAST of Csa6G045180 vs. TrEMBL
Match: A0A067JTS7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21008 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 1.5e-51
Identity = 103/108 (95.37%), Postives = 107/108 (99.07%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60
           MAPKKDKAPPP+SKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLLSEVPKYKL
Sbjct: 1   MAPKKDKAPPPASKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEVPKYKL 60

Query: 61  VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 109
           VTPSILSDR+R+NGSLARRAIKDLMARGSIRMISAH+SQQIYTRATNT
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRATNT 108

[Close]

BLAST of Csa6G045180 vs. TAIR10
Match: AT2G21580.1 (AT2G21580.1 Ribosomal protein S25 family protein)

HSP 1 Score: 203.0 bits (515), Expect = 9.5e-53
Identity = 97/108 (89.81%), Postives = 103/108 (95.37%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLL+E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKL 60

Query: 61  VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 109
           +TPSILSDRMR+NGSLARRAI++LMA+G IRM+SAHSSQQIYTRATNT
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAHSSQQIYTRATNT 108

[Close]

BLAST of Csa6G045180 vs. TAIR10
Match: AT4G39200.1 (AT4G39200.1 Ribosomal protein S25 family protein)

HSP 1 Score: 199.5 bits (506), Expect = 1.1e-51
Identity = 95/108 (87.96%), Postives = 102/108 (94.44%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLL+E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKL 60

Query: 61  VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 109
           +TPSILSDRMR+NGSLARRAI++LMA+G IRM++AHSSQQIYTRATNT
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQQIYTRATNT 108

[Close]

BLAST of Csa6G045180 vs. TAIR10
Match: AT4G34555.1 (AT4G34555.1 Ribosomal protein S25 family protein)

HSP 1 Score: 198.0 bits (502), Expect = 3.1e-51
Identity = 94/107 (87.85%), Postives = 102/107 (95.33%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLLSE PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKL 60

Query: 61  VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATN 108
           +TPSILSDR+R+NGSLARRAI++LMA+G+IRM+SAHSSQQIYTRAT+
Sbjct: 61  ITPSILSDRLRINGSLARRAIRELMAKGTIRMVSAHSSQQIYTRATH 107

[Close]

BLAST of Csa6G045180 vs. TAIR10
Match: AT2G16360.1 (AT2G16360.1 Ribosomal protein S25 family protein)

HSP 1 Score: 134.8 bits (338), Expect = 3.2e-32
Identity = 64/83 (77.11%), Postives = 74/83 (89.16%), Query Frame = 1


Query: 24  KKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRMRVNGSLARRAIKD 83
           + +K SKGKQKEKVNNMVLFDQ TYDKL+SE PK+KL+TPSILSDR+R+NGSLAR+AI+D
Sbjct: 40  ESRKRSKGKQKEKVNNMVLFDQATYDKLMSEAPKFKLITPSILSDRLRINGSLARKAIRD 99

Query: 84  LMARGSIRMISAHSSQQIYTRAT 107
           LM +G+IRM+S HSSQQI TRAT
Sbjct: 100 LMVKGTIRMVSTHSSQQINTRAT 122

[Close]

BLAST of Csa6G045180 vs. NCBI nr
Match: gi|449446287|ref|XP_004140903.1| (PREDICTED: 40S ribosomal protein S25-2 [Cucumis sativus])

HSP 1 Score: 216.1 bits (549), Expect = 3.1e-53
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60

Query: 61  VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 109
           VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT
Sbjct: 61  VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 108

[Close]

BLAST of Csa6G045180 vs. NCBI nr
Match: gi|659113490|ref|XP_008456601.1| (PREDICTED: 40S ribosomal protein S25-2-like [Cucumis melo])

HSP 1 Score: 214.5 bits (545), Expect = 9.0e-53
Identity = 106/108 (98.15%), Postives = 108/108 (100.00%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60

Query: 61  VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 109
           VTPSILSDR+R+NGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 108

[Close]

BLAST of Csa6G045180 vs. NCBI nr
Match: gi|802713424|ref|XP_012084672.1| (PREDICTED: 40S ribosomal protein S25-like [Jatropha curcas])

HSP 1 Score: 211.1 bits (536), Expect = 9.9e-52
Identity = 104/108 (96.30%), Postives = 107/108 (99.07%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNM+LFDQ TYDKLLSEVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMILFDQATYDKLLSEVPKYKL 60

Query: 61  VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 109
           VTPSILSDR+RVNGSLARRAIKDLMARGSIRMISAH+SQQIYTRATNT
Sbjct: 61  VTPSILSDRLRVNGSLARRAIKDLMARGSIRMISAHASQQIYTRATNT 108

[Close]

BLAST of Csa6G045180 vs. NCBI nr
Match: gi|255565659|ref|XP_002523819.1| (PREDICTED: 40S ribosomal protein S25 [Ricinus communis])

HSP 1 Score: 210.7 bits (535), Expect = 1.3e-51
Identity = 103/108 (95.37%), Postives = 107/108 (99.07%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLLSEVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEVPKYKL 60

Query: 61  VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 109
           +TPSILSDR+R+NGSLARRAIKDLMARGSIRMISAH+SQQIYTRATNT
Sbjct: 61  ITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRATNT 108

[Close]

BLAST of Csa6G045180 vs. NCBI nr
Match: gi|657997509|ref|XP_008391134.1| (PREDICTED: 40S ribosomal protein S25-like [Malus domestica])

HSP 1 Score: 210.7 bits (535), Expect = 1.3e-51
Identity = 102/108 (94.44%), Postives = 108/108 (100.00%), Query Frame = 1


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60

Query: 61  VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 109
           +TPSILSDR+R+NGSLARRAIKDLMARGSIR+I+AH+SQQIYTRATNT
Sbjct: 61  ITPSILSDRLRINGSLARRAIKDLMARGSIRLIAAHASQQIYTRATNT 108

The following BLAST results are available for this feature:

BLAST of Csa6G045180 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS252_ARATH	1.7e-51	89.81	40S ribosomal protein S25-2 OS=Arabidopsis thaliana GN=RPS25B PE=2 SV=1	[more]
RS254_ARATH	1.9e-50	87.96	40S ribosomal protein S25-4 OS=Arabidopsis thaliana GN=RPS25E PE=2 SV=1	[more]
RS25_SOLLC	5.4e-50	87.04	40S ribosomal protein S25 OS=Solanum lycopersicum GN=RPS25 PE=3 SV=1	[more]
RS253_ARATH	5.4e-50	87.85	40S ribosomal protein S25-3 OS=Arabidopsis thaliana GN=RPS25D PE=3 SV=2	[more]
RS251_ARATH	8.7e-48	84.91	40S ribosomal protein S25-1 OS=Arabidopsis thaliana GN=RPS25A PE=3 SV=3	[more]

BLAST of Csa6G045180 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KB40_CUCSA	2.1e-53	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G045180 PE=4 SV=1	[more]
A0A067JTK0_JATCU	6.9e-52	96.30	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21007 PE=4 SV=1	[more]
A0A067JDX0_JATCU	9.0e-52	95.37	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03002 PE=4 SV=1	[more]
B9SCV0_RICCO	9.0e-52	95.37	40S ribosomal protein S25, putative OS=Ricinus communis GN=RCOM_1281730 PE=4 SV=...	[more]
A0A067JTS7_JATCU	1.5e-51	95.37	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21008 PE=4 SV=1	[more]

BLAST of Csa6G045180 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G21580.1	9.5e-53	89.81	Ribosomal protein S25 family protein	[more]
AT4G39200.1	1.1e-51	87.96	Ribosomal protein S25 family protein	[more]
AT4G34555.1	3.1e-51	87.85	Ribosomal protein S25 family protein	[more]
AT2G16360.1	3.2e-32	77.11	Ribosomal protein S25 family protein	[more]

BLAST of Csa6G045180 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449446287\|ref\|XP_004140903.1\|	3.1e-53	100.00	PREDICTED: 40S ribosomal protein S25-2 [Cucumis sativus]	[more]
gi\|659113490\|ref\|XP_008456601.1\|	9.0e-53	98.15	PREDICTED: 40S ribosomal protein S25-2-like [Cucumis melo]	[more]
gi\|802713424\|ref\|XP_012084672.1\|	9.9e-52	96.30	PREDICTED: 40S ribosomal protein S25-like [Jatropha curcas]	[more]
gi\|255565659\|ref\|XP_002523819.1\|	1.3e-51	95.37	PREDICTED: 40S ribosomal protein S25 [Ricinus communis]	[more]
gi\|657997509\|ref\|XP_008391134.1\|	1.3e-51	94.44	PREDICTED: 40S ribosomal protein S25-like [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004977	Ribosomal_S25

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006623	protein targeting to vacuole
biological_process	GO:0007033	vacuole organization
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005768	endosome
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0031201	SNARE complex
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU090727	cucumber EST collection version 3.0	transcribed_cluster
CU096163	cucumber EST collection version 3.0	transcribed_cluster
CU123348	cucumber EST collection version 3.0	transcribed_cluster
CU149504	cucumber EST collection version 3.0	transcribed_cluster
CU174481	cucumber EST collection version 3.0	transcribed_cluster
CU174701	cucumber EST collection version 3.0	transcribed_cluster
CU176907	cucumber EST collection version 3.0	transcribed_cluster
CU177256	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G045180.1	Csa6G045180.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU123348	CU123348	transcribed_cluster
CU096163	CU096163	transcribed_cluster
CU177256	CU177256	transcribed_cluster
CU174701	CU174701	transcribed_cluster
CU176907	CU176907	transcribed_cluster
CU174481	CU174481	transcribed_cluster
CU090727	CU090727	transcribed_cluster
CU149504	CU149504	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004977	Ribosomal protein S25	PRODOM	PD012268		coord: 40..107 score: 5.0
IPR004977	Ribosomal protein S25	PANTHER	PTHR12850	FAMILY NOT NAMED	coord: 5..108 score: 1.4
IPR004977	Ribosomal protein S25	PFAM	PF03297	Ribosomal_S25	coord: 8..105 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G045180	Cla013693	Watermelon (97103) v1	cuwmB457
Csa6G045180	MELO3C019896	Melon (DHL92) v3.5.1	cumeB474
Csa6G045180	ClCG08G008280	Watermelon (Charleston Gray)	cuwcgB497
Csa6G045180	Lsi08G006460	Bottle gourd (USVL1VR-Ls)	culsiB478
Csa6G045180	MELO3C019896.2	Melon (DHL92) v3.6.1	cumedB456
Csa6G045180	Cla97C08G151020	Watermelon (97103) v2	cuwmbB488
Csa6G045180	Bhi04G001322	Wax gourd	cuwgoB588
Csa6G045180	CSPI06G03970	Wild cucumber (PI 183967)	cpicuB314
Csa6G045180	Cucsa.364650	Cucumber (Gy14) v1	cgycuB511
Csa6G045180	CmaCh15G005220	Cucurbita maxima (Rimu)	cmacuB308
Csa6G045180	CmaCh04G025180	Cucurbita maxima (Rimu)	cmacuB767
Csa6G045180	CmoCh15G005300	Cucurbita moschata (Rifu)	cmocuB297
Csa6G045180	CmoCh04G026370	Cucurbita moschata (Rifu)	cmocuB760
Csa6G045180	Cp4.1LG01g25120	Cucurbita pepo (Zucchini)	cpecuB459
Csa6G045180	CsGy6G003940	Cucumber (Gy14) v2	cgybcuB282
Csa6G045180	Carg01677	Silver-seed gourd	carcuB0850
Csa6G045180	Carg04622	Silver-seed gourd	carcuB0711

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G045180	Cucurbita pepo (Zucchini)	cpecuB197