Carg01677 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg01677
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	40S ribosomal protein S25, putative
Location	Cucurbita_argyrosperma_scaffold_004 : 2342330 .. 2343740 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCCCTCCTTTCTATTCCGATCGAAACCTCTGCAACTCGTTCCCTCAAACCCTAGAAATCAAATCTCATGGTGAGTTGCTATCTGCATTTTCTTGTTGATTCATCTCCAAATTATTCTTTCTTTCTTTATTTCTTTTCATTTTCTTCTGGAACTTCTGTACTGATTCTACTTATTGTGGTGTTTGTTGTTGTTTTTGTTTTGTATCGTTTGAATCGTAGGCACCAAAGAAGGATAAGGCTCCTCCACCGTCCTCCAAGCCCGCTAAATCTGGTGGAGGAAAGCAGAAGAAGAAGGTAGCTTCTTAGAATTAAATACCGCTAGCGGTTTCATGATTCGTATGCCGATGCATACCAAGCCCTATCGTTCAAGAATATCATTTAATGAGATTTAGTTCTTTTAATTTCCTCTGGTTTTACTGCATTGCTTAGACGGAGTGTTATTCGTATTTTTCTGAAGTTAGTATTGCTGAATTTTATTTCAACGCTTTGATATTTGGAGCTACCTTTCTTCATACATTACGTAGCATATCCTTCTTCACCGTACAGAGTTCACAAAACTAGCTTAGGCGTTAAATATGGGGCAATCGGAAAGTGATTTTTCATTCGATTAGGAAGAAAATTCAAGGCCTTCAAAAATACAATGAGATGTTTGGAATCCAGTGAAGTTTGTTGAATAGGAGGATCACTATGATTTTCTTTTTGGTATTAAGCTTTATATGGTGCTTATCAATTGGATTGCAGAAATGGAGCAAAGGCAAGCAAAAGGAGAAGGTGAACAACATGGTTTTATTTGATCAGGCAAGTTATGATAAGCTCCTTTCTGAAGCTCCCAAGTTCAAGCTGGTCACTCCGTCTATCCTTTCTGATAGGTTGAGGGTATGTCTTTTCTGCAATCTTTTTTTTGTTCTTGGCCTGAATATGTTGAGAAGAACTGGGCATTTATCCTAAACCCATTTGGTGTTTCAAACAATTAAAATACCCAACCCACACACTTAGTCTACTTATGAACATGAAATTCTTAGTTAAGGAGGAATCAGATTGGCAGGGTACTAATACAACTTTCTTATAGATCAATGGGTCGCTCGCACGAAGAGCAATTAAGGATTTGATGGCACGGGGTTCCATCAGGATGATATCGTCTCACTCCAGTCAGCAGATCTATACAAGAGCAACCAACGCCTAAGGCTATGGCACGGGGTTCATATGAACTCTTTCCTGGAAGGCCATGGTTATGTAGTTCCCTTCCCATTTTGCAATTCCGAATTTTGTCCATTGATGAAATTATCTTTTAGTCCGTTCCAATGGCTGGATGATCTTTTAATGTGATGTGGTCTTTTATTTGTTAATCAGGTTTTTCGCGATTTGGTCTTTATTCGTTAATTGGGTTTGGGTAGTTCGTTTTTTTTTTTT

mRNA sequence

ATTCCCTCCTTTCTATTCCGATCGAAACCTCTGCAACTCGTTCCCTCAAACCCTAGAAATCAAATCTCATGGCACCAAAGAAGGATAAGGCTCCTCCACCGTCCTCCAAGCCCGCTAAATCTGGTGGAGGAAAGCAGAAGAAGAAGAAATGGAGCAAAGGCAAGCAAAAGGAGAAGGTGAACAACATGGTTTTATTTGATCAGGCAAGTTATGATAAGCTCCTTTCTGAAGCTCCCAAGTTCAAGCTGGTCACTCCGTCTATCCTTTCTGATAGGTTGAGGATCAATGGGTCGCTCGCACGAAGAGCAATTAAGGATTTGATGGCACGGGGTTCCATCAGGATGATATCGTCTCACTCCAGTCAGCAGATCTATACAAGAGCAACCAACGCCTAAGGCTATGGCACGGGGTTCATATGAACTCTTTCCTGGAAGGCCATGGTTATGTAGTTCCCTTCCCATTTTGCAATTCCGAATTTTGTCCATTGATGAAATTATCTTTTAGTCCGTTCCAATGGCTGGATGATCTTTTAATGTGATGTGGTCTTTTATTTGTTAATCAGGTTTTTCGCGATTTGGTCTTTATTCGTTAATTGGGTTTGGGTAGTTCGTTTTTTTTTTTT

Coding sequence (CDS)

ATGGCACCAAAGAAGGATAAGGCTCCTCCACCGTCCTCCAAGCCCGCTAAATCTGGTGGAGGAAAGCAGAAGAAGAAGAAATGGAGCAAAGGCAAGCAAAAGGAGAAGGTGAACAACATGGTTTTATTTGATCAGGCAAGTTATGATAAGCTCCTTTCTGAAGCTCCCAAGTTCAAGCTGGTCACTCCGTCTATCCTTTCTGATAGGTTGAGGATCAATGGGTCGCTCGCACGAAGAGCAATTAAGGATTTGATGGCACGGGGTTCCATCAGGATGATATCGTCTCACTCCAGTCAGCAGATCTATACAAGAGCAACCAACGCCTAA

Protein sequence

MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQASYDKLLSEAPKFKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATNA

Homology

[Close]

BLAST of Carg01677 vs. NCBI nr
Match: XP_022938725.1 (40S ribosomal protein S25-3 [Cucurbita moschata] >XP_022993772.1 40S ribosomal protein S25-3 [Cucurbita maxima] >XP_023549732.1 40S ribosomal protein S25-3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 157.9 bits (398), Expect = 1.9e-35
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQASYDKLLSEAPKFKL 60
           MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQASYDKLLSEAPKFKL
Sbjct: 1   MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQASYDKLLSEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATNA 109
           VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATNA
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATNA 108

[Close]

BLAST of Carg01677 vs. NCBI nr
Match: XP_006424223.1 (40S ribosomal protein S25-3 [Citrus clementina] >XP_006487895.1 40S ribosomal protein S25-3 [Citrus sinensis] >ESR37463.1 hypothetical protein CICLE_v10029626mg [Citrus clementina] >KDO58114.1 hypothetical protein CISIN_1g033931mg [Citrus sinensis])

HSP 1 Score: 152.5 bits (384), Expect = 8.1e-34
Identity = 102/107 (95.33%), Postives = 106/107 (99.07%), Query Frame = 0


Query: 1   MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQASYDKLLSEAPKFKL 60
           MAPKKDK XXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQA+YDKLLSEAPKFKL
Sbjct: 1   MAPKKDKAXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATN 108
           +TPSILSDRLRINGSLARRAIKDLMARGSIRMIS+H+SQQIYTRATN
Sbjct: 61  ITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRATN 107

[Close]

BLAST of Carg01677 vs. NCBI nr
Match: ABK21138.1 (unknown [Picea sitchensis] >ABK21473.1 unknown [Picea sitchensis] >ABK24990.1 unknown [Picea sitchensis] >ABK25512.1 unknown [Picea sitchensis] >ABK26827.1 unknown [Picea sitchensis] >ABR16473.1 unknown [Picea sitchensis] >ABR16539.1 unknown [Picea sitchensis] >ACN39778.1 unknown [Picea sitchensis] >ACN40995.1 unknown [Picea sitchensis] >ACN41055.1 unknown [Picea sitchensis])

HSP 1 Score: 151.4 bits (381), Expect = 1.8e-33
Identity = 102/107 (95.33%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQASYDKLLSEAPKFKL 60
           MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQA+YDKLLSEAPK+KL
Sbjct: 1   MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQATYDKLLSEAPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATN 108
           +TPSILSDRLRINGSLAR+AIKDLMARGSIRMIS+HSSQQIYTRATN
Sbjct: 61  ITPSILSDRLRINGSLARKAIKDLMARGSIRMISAHSSQQIYTRATN 107

[Close]

BLAST of Carg01677 vs. NCBI nr
Match: XP_008442240.1 (PREDICTED: 40S ribosomal protein S25-2 [Cucumis melo])

HSP 1 Score: 151.0 bits (380), Expect = 2.3e-33
Identity = 102/107 (95.33%), Postives = 106/107 (99.07%), Query Frame = 0


Query: 1   MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQASYDKLLSEAPKFKL 60
           MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQ +YDKLLSEAPKFKL
Sbjct: 1   MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATN 108
           +TPSILSDRLRINGSLARRAIKDLMARGSIR+IS+HSSQQIYTRATN
Sbjct: 61  ITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATN 107

[Close]

BLAST of Carg01677 vs. NCBI nr
Match: XP_012084673.1 (40S ribosomal protein S25 isoform X1 [Jatropha curcas] >KDP27277.1 hypothetical protein JCGZ_21008 [Jatropha curcas])

HSP 1 Score: 150.2 bits (378), Expect = 4.0e-33
Identity = 101/107 (94.39%), Postives = 105/107 (98.13%), Query Frame = 0


Query: 1   MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQASYDKLLSEAPKFKL 60
           MAPKKDK XXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQA+YDKLLSE PK+KL
Sbjct: 1   MAPKKDKAXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQATYDKLLSEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATN 108
           VTPSILSDRLRINGSLARRAIKDLMARGSIRMIS+H+SQQIYTRATN
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRATN 107

[Close]

BLAST of Carg01677 vs. TAIR10
Match: AT4G34555.1 (Ribosomal protein S25 family protein)

HSP 1 Score: 146.4 bits (368), Expect = 1.0e-35
Identity = 97/107 (90.65%), Postives = 106/107 (99.07%), Query Frame = 0


Query: 1   MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQASYDKLLSEAPKFKL 60
           MAPKKDK XXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQA+YDKLLSEAPKFKL
Sbjct: 1   MAPKKDKVXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATN 108
           +TPSILSDRLRINGSLARRAI++LMA+G+IRM+S+HSSQQIYTRAT+
Sbjct: 61  ITPSILSDRLRINGSLARRAIRELMAKGTIRMVSAHSSQQIYTRATH 107

[Close]

BLAST of Carg01677 vs. TAIR10
Match: AT4G39200.1 (Ribosomal protein S25 family protein)

HSP 1 Score: 144.1 bits (362), Expect = 5.2e-35
Identity = 95/107 (88.79%), Postives = 105/107 (98.13%), Query Frame = 0


Query: 1   MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQASYDKLLSEAPKFKL 60
           MAPKKDK XXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQA+YDKLL+EAPKFKL
Sbjct: 1   MAPKKDKVXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATN 108
           +TPSILSDR+RINGSLARRAI++LMA+G IRM+++HSSQQIYTRATN
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQQIYTRATN 107

[Close]

BLAST of Carg01677 vs. TAIR10
Match: AT2G21580.1 (Ribosomal protein S25 family protein)

HSP 1 Score: 143.7 bits (361), Expect = 6.8e-35
Identity = 95/107 (88.79%), Postives = 104/107 (97.20%), Query Frame = 0


Query: 1   MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQASYDKLLSEAPKFKL 60
           MAPKKDK XXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQ +YDKLL+EAPKFKL
Sbjct: 1   MAPKKDKVXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATN 108
           +TPSILSDR+RINGSLARRAI++LMA+G IRM+S+HSSQQIYTRATN
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAHSSQQIYTRATN 107

[Close]

BLAST of Carg01677 vs. TAIR10
Match: AT2G16360.1 (Ribosomal protein S25 family protein)

HSP 1 Score: 134.4 bits (337), Expect = 4.1e-32
Identity = 67/78 (85.90%), Postives = 76/78 (97.44%), Query Frame = 0


Query: 29  SKGKQKEKVNNMVLFDQASYDKLLSEAPKFKLVTPSILSDRLRINGSLARRAIKDLMARG 88
           SKGKQKEKVNNMVLFDQA+YDKL+SEAPKFKL+TPSILSDRLRINGSLAR+AI+DLM +G
Sbjct: 45  SKGKQKEKVNNMVLFDQATYDKLMSEAPKFKLITPSILSDRLRINGSLARKAIRDLMVKG 104

Query: 89  SIRMISSHSSQQIYTRAT 107
           +IRM+S+HSSQQI TRAT
Sbjct: 105 TIRMVSTHSSQQINTRAT 122

[Close]

BLAST of Carg01677 vs. Swiss-Prot
Match: sp|Q8GYL5|RS253_ARATH (40S ribosomal protein S25-3 OS=Arabidopsis thaliana OX=3702 GN=RPS25D PE=3 SV=2)

HSP 1 Score: 146.4 bits (368), Expect = 1.9e-34
Identity = 97/107 (90.65%), Postives = 106/107 (99.07%), Query Frame = 0


Query: 1   MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQASYDKLLSEAPKFKL 60
           MAPKKDK XXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQA+YDKLLSEAPKFKL
Sbjct: 1   MAPKKDKVXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATN 108
           +TPSILSDRLRINGSLARRAI++LMA+G+IRM+S+HSSQQIYTRAT+
Sbjct: 61  ITPSILSDRLRINGSLARRAIRELMAKGTIRMVSAHSSQQIYTRATH 107

[Close]

BLAST of Carg01677 vs. Swiss-Prot
Match: sp|Q9T029|RS254_ARATH (40S ribosomal protein S25-4 OS=Arabidopsis thaliana OX=3702 GN=RPS25E PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 9.4e-34
Identity = 95/107 (88.79%), Postives = 105/107 (98.13%), Query Frame = 0


Query: 1   MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQASYDKLLSEAPKFKL 60
           MAPKKDK XXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQA+YDKLL+EAPKFKL
Sbjct: 1   MAPKKDKVXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATN 108
           +TPSILSDR+RINGSLARRAI++LMA+G IRM+++HSSQQIYTRATN
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQQIYTRATN 107

[Close]

BLAST of Carg01677 vs. Swiss-Prot
Match: sp|Q9SIK2|RS252_ARATH (40S ribosomal protein S25-2 OS=Arabidopsis thaliana OX=3702 GN=RPS25B PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.2e-33
Identity = 95/107 (88.79%), Postives = 104/107 (97.20%), Query Frame = 0


Query: 1   MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQASYDKLLSEAPKFKL 60
           MAPKKDK XXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQ +YDKLL+EAPKFKL
Sbjct: 1   MAPKKDKVXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATN 108
           +TPSILSDR+RINGSLARRAI++LMA+G IRM+S+HSSQQIYTRATN
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAHSSQQIYTRATN 107

[Close]

BLAST of Carg01677 vs. Swiss-Prot
Match: sp|Q9SIW5|RS251_ARATH (40S ribosomal protein S25-1 OS=Arabidopsis thaliana OX=3702 GN=RPS25A PE=3 SV=3)

HSP 1 Score: 141.0 bits (354), Expect = 7.9e-33
Identity = 94/106 (88.68%), Postives = 103/106 (97.17%), Query Frame = 0


Query: 1   MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQASYDKLLSEAPKFKL 60
           MAPKKDK XXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQA+YDKL+SEAPKFKL
Sbjct: 1   MAPKKDKVXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQATYDKLMSEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRAT 107
           +TPSILSDRLRINGSLAR+AI+DLM +G+IRM+S+HSSQQI TRAT
Sbjct: 61  ITPSILSDRLRINGSLARKAIRDLMVKGTIRMVSTHSSQQINTRAT 106

[Close]

BLAST of Carg01677 vs. Swiss-Prot
Match: sp|P46301|RS25_SOLLC (40S ribosomal protein S25 OS=Solanum lycopersicum OX=4081 GN=RPS25 PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 3.0e-32
Identity = 93/107 (86.92%), Postives = 106/107 (99.07%), Query Frame = 0


Query: 1   MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQASYDKLLSEAPKFKL 60
           MAPKK +XXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFD+++YDKLLSEAPK+KL
Sbjct: 1   MAPKKAQXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDKSTYDKLLSEAPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATN 108
           +TPS+LSDRLRI+GSLAR+AI+DLMARGSIRM+S+H+SQQIYTRATN
Sbjct: 61  ITPSVLSDRLRISGSLARKAIRDLMARGSIRMVSAHASQQIYTRATN 107

[Close]

BLAST of Carg01677 vs. TrEMBL
Match: tr|V4RSB2|V4RSB2_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10029626mg PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 5.3e-34
Identity = 102/107 (95.33%), Postives = 106/107 (99.07%), Query Frame = 0


Query: 1   MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQASYDKLLSEAPKFKL 60
           MAPKKDK XXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQA+YDKLLSEAPKFKL
Sbjct: 1   MAPKKDKAXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATN 108
           +TPSILSDRLRINGSLARRAIKDLMARGSIRMIS+H+SQQIYTRATN
Sbjct: 61  ITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRATN 107

[Close]

BLAST of Carg01677 vs. TrEMBL
Match: tr|A0A067ESG8|A0A067ESG8_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g033931mg PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 5.3e-34
Identity = 102/107 (95.33%), Postives = 106/107 (99.07%), Query Frame = 0


Query: 1   MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQASYDKLLSEAPKFKL 60
           MAPKKDK XXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQA+YDKLLSEAPKFKL
Sbjct: 1   MAPKKDKAXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATN 108
           +TPSILSDRLRINGSLARRAIKDLMARGSIRMIS+H+SQQIYTRATN
Sbjct: 61  ITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRATN 107

[Close]

BLAST of Carg01677 vs. TrEMBL
Match: tr|A9NKH7|A9NKH7_PICSI (Uncharacterized protein OS=Picea sitchensis OX=3332 PE=2 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.2e-33
Identity = 102/107 (95.33%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQASYDKLLSEAPKFKL 60
           MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQA+YDKLLSEAPK+KL
Sbjct: 1   MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQATYDKLLSEAPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATN 108
           +TPSILSDRLRINGSLAR+AIKDLMARGSIRMIS+HSSQQIYTRATN
Sbjct: 61  ITPSILSDRLRINGSLARKAIKDLMARGSIRMISAHSSQQIYTRATN 107

[Close]

BLAST of Carg01677 vs. TrEMBL
Match: tr|A0A1S3B608|A0A1S3B608_CUCME (40S ribosomal protein S25-2 OS=Cucumis melo OX=3656 GN=LOC103486154 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.5e-33
Identity = 102/107 (95.33%), Postives = 106/107 (99.07%), Query Frame = 0


Query: 1   MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQASYDKLLSEAPKFKL 60
           MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQ +YDKLLSEAPKFKL
Sbjct: 1   MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATN 108
           +TPSILSDRLRINGSLARRAIKDLMARGSIR+IS+HSSQQIYTRATN
Sbjct: 61  ITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATN 107

[Close]

BLAST of Carg01677 vs. TrEMBL
Match: tr|A0A2N9J628|A0A2N9J628_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS59693 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.0e-33
Identity = 101/107 (94.39%), Postives = 106/107 (99.07%), Query Frame = 0


Query: 1   MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQASYDKLLSEAPKFKL 60
           MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQ +YDKLLSEAPKFKL
Sbjct: 1   MAPKKDKXXXXXXXXXXXXXXXXXXXXXSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATN 108
           +TPSILSDRLRINGSLARRAI+DLMARGSIRM+S+HSSQQIYTRATN
Sbjct: 61  ITPSILSDRLRINGSLARRAIRDLMARGSIRMVSTHSSQQIYTRATN 107

The following BLAST results are available for this feature:

BLAST of Carg01677 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022938725.1	1.9e-35	100.00	40S ribosomal protein S25-3 [Cucurbita moschata] >XP_022993772.1 40S ribosomal p...	[more]
XP_006424223.1	8.1e-34	95.33	40S ribosomal protein S25-3 [Citrus clementina] >XP_006487895.1 40S ribosomal pr...	[more]
ABK21138.1	1.8e-33	95.33	unknown [Picea sitchensis] >ABK21473.1 unknown [Picea sitchensis] >ABK24990.1 un...	[more]
XP_008442240.1	2.3e-33	95.33	PREDICTED: 40S ribosomal protein S25-2 [Cucumis melo]	[more]
XP_012084673.1	4.0e-33	94.39	40S ribosomal protein S25 isoform X1 [Jatropha curcas] >KDP27277.1 hypothetical ...	[more]

BLAST of Carg01677 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G34555.1	1.0e-35	90.65	Ribosomal protein S25 family protein	[more]
AT4G39200.1	5.2e-35	88.79	Ribosomal protein S25 family protein	[more]
AT2G21580.1	6.8e-35	88.79	Ribosomal protein S25 family protein	[more]
AT2G16360.1	4.1e-32	85.90	Ribosomal protein S25 family protein	[more]

BLAST of Carg01677 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8GYL5\|RS253_ARATH	1.9e-34	90.65	40S ribosomal protein S25-3 OS=Arabidopsis thaliana OX=3702 GN=RPS25D PE=3 SV=2	[more]
sp\|Q9T029\|RS254_ARATH	9.4e-34	88.79	40S ribosomal protein S25-4 OS=Arabidopsis thaliana OX=3702 GN=RPS25E PE=3 SV=1	[more]
sp\|Q9SIK2\|RS252_ARATH	1.2e-33	88.79	40S ribosomal protein S25-2 OS=Arabidopsis thaliana OX=3702 GN=RPS25B PE=3 SV=1	[more]
sp\|Q9SIW5\|RS251_ARATH	7.9e-33	88.68	40S ribosomal protein S25-1 OS=Arabidopsis thaliana OX=3702 GN=RPS25A PE=3 SV=3	[more]
sp\|P46301\|RS25_SOLLC	3.0e-32	86.92	40S ribosomal protein S25 OS=Solanum lycopersicum OX=4081 GN=RPS25 PE=3 SV=1	[more]

BLAST of Carg01677 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|V4RSB2\|V4RSB2_9ROSI	5.3e-34	95.33	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10029626mg PE=4 ...	[more]
tr\|A0A067ESG8\|A0A067ESG8_CITSI	5.3e-34	95.33	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g033931mg PE=4 SV=1	[more]
tr\|A9NKH7\|A9NKH7_PICSI	1.2e-33	95.33	Uncharacterized protein OS=Picea sitchensis OX=3332 PE=2 SV=1	[more]
tr\|A0A1S3B608\|A0A1S3B608_CUCME	1.5e-33	95.33	40S ribosomal protein S25-2 OS=Cucumis melo OX=3656 GN=LOC103486154 PE=4 SV=1	[more]
tr\|A0A2N9J628\|A0A2N9J628_FAGSY	2.0e-33	94.39	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS59693 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004977	Ribosomal_S25

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg01677-RA	Carg01677-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:1.10.10.2780		coord: 21..108 e-value: 2.2E-38 score: 132.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	PANTHER	PTHR12850:SF13	SUBFAMILY NOT NAMED	coord: 1..107
IPR004977	Ribosomal protein S25	PFAM	PF03297	Ribosomal_S25	coord: 8..105 e-value: 2.0E-40 score: 137.0
IPR004977	Ribosomal protein S25	PANTHER	PTHR12850	FAMILY NOT NAMED	coord: 1..107
IPR004977	Ribosomal protein S25	PRODOM	PD012268		coord: 40..108 e-value: 3.0E-30 score: 323.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg01677	Cla013693	Watermelon (97103) v1	carwmB0826
Carg01677	Csa6G045180	Cucumber (Chinese Long) v2	carcuB0850
Carg01677	MELO3C019896	Melon (DHL92) v3.5.1	carmeB0823
Carg01677	ClCG08G008280	Watermelon (Charleston Gray)	carwcgB0805
Carg01677	CSPI06G03970	Wild cucumber (PI 183967)	carcpiB0870
Carg01677	Cucsa.364650	Cucumber (Gy14) v1	carcgyB0955
Carg01677	CmaCh04G025180	Cucurbita maxima (Rimu)	carcmaB1150
Carg01677	CmoCh15G005300	Cucurbita moschata (Rifu)	carcmoB1118
Carg01677	CmoCh04G026370	Cucurbita moschata (Rifu)	carcmoB1121
Carg01677	Lsi08G006460	Bottle gourd (USVL1VR-Ls)	carlsiB758
Carg01677	Cp4.1LG01g25120	Cucurbita pepo (Zucchini)	carcpeB1158
Carg01677	Cp4.1LG13g10590	Cucurbita pepo (Zucchini)	carcpeB1157
Carg01677	CsGy6G003940	Cucumber (Gy14) v2	carcgybB0824
Carg01677	MELO3C019896.2	Melon (DHL92) v3.6.1	carmedB0834
Carg01677	CsaV3_6G004250	Cucumber (Chinese Long) v3	carcucB0874
Carg01677	Cla97C08G151020	Watermelon (97103) v2	carwmbB0864
Carg01677	Bhi04G001322	Wax gourd	carwgoB0965

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg01677	Carg04622	Silver-seed gourd	carcarB577

The following block(s) are covering this gene:


Gene	Organism	Block
Carg01677	Cucurbita maxima (Rimu)	carcmaB1148