Cp4.1LG13g10590 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG13g10590
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Description40S ribosomal protein S25
LocationCp4.1LG13 : 6826638 .. 6828342 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTCCTTTCTATTCCGTTCGAAACCTTTGCAACTCTTCCCTCAAACCCTAGAAATCAAATCTCATGGTGAGTTGCTATCTGCACTTTCTTGTTGATTCATCTCCAAATTATTCTTTCTTTCTTTATTCCTTTTCATTTCATTCTGGAACTTCTGTACTGATTCTACTTATTGTGGTGTTTGTTGTTGTTTTTGTTTTTGTTTTGTATCGTTTGAATCGTAGGCACCAAAGAAGGATAAGGCTCCTCCACCGTCCTCCAAGCCCGCTAAATCTGGCGGAGGAAAGCAGAAGAAGAAGGTAAGCTTCTTAGAATTAAATACTGCTAGCGATTTCATGATTCGTATGCCGATGCATGCCTAGCCCTATCGTTCAAGAAGATCATTTAATAAGATTTAGTTCTTTTAATTTCCTCTGGTTTTACTGCATTGCTTAGACGGAGTGTTATTCGTATATTCTGAAGTTAGTATTGCTGAATTTTATTTCAACACTTTGATATTTGGAGCGAGCTGCCTTTTGTAATTAGGTCTTCATACATTATGTAGCATATCCTTCTTCACCGTACAGAGTTCACAAAACTAGCTTAGGCGTTAAATATGGGGCAATCGGAAAGTGATTTTTCATTCGATTAGGAAGAAAATTCTAGGCCTTCAAAAATACAATGAGATGTTTGGGATCCAGTGAAGTTTGTTGAATAGGAGGATCACTATGATTTTCTTTTTGGTATTAAGCTTTATATGATGGTTATCAATTGGATTGCAGAAATGGAGCAAAGGCAAGCAAAAGGAGAAGGTGAACAACATGGTTTTATTTGATCAGGCAAGTTATGATAAGCTCCTTTCTGAAGCTCCCAAGTTCAAGCTGGTCACTCCGTCTATCCTTTCTGATAGGTTGAGGGTATGTCTTTTCTTCCTTTTACTCGTATGTGGTTTTTCCCGTAGTCTGCAATCTTTTTTTTGTTCTTGGCCTGAATATGTTGAGAAGAACTGGGCATTTATCCTAAAACCCACATGGTGTTTCAACCAATATGGATCGGATTGGGTTGATACTTAATTAAAATGCTCAACCCACACACTTAGTCTACTTATGAACATGAAATTCTTAGTTAAGGAGGAATCAGATTGGCAGGGTACTGAAATTTTATGCAGGCCTTTTTGACTAATGCAACTTTCTTATAGATCAATGGATCGCTCGCACGAAGAGCAATTAAGGATTTGATGGCACGGGGTTCCATCAGGATGATATCGTCTCACTCCAGTCAGCAGATCTATACAAGAGCAACCAACGCCTAAGGCTATGGCACGGGGTTCATATAAACTCTTTCCCGGAAGGCTATGGTTATGTAGTTCCCTTCCCATTTTGCAATTCCGAATTTTGTCCATCGATGAAATTATCTTTTAGTCTGTTCTAATGGCTGGATGATCTTTTAATGTGATGTGGTCTTTTATTTGTTAATCGGGTTGTTCGTGATGTGGTCTTTTATTCGTTAATTGGGTTTGGGTAGTTCGTGTTTTTTTTTTCTAGCTCTAATCATAATGTGCCAGTCGTGTAGAAGTTGGCTTTAGTTGCAAGGATTTGACAATAGTCTCAATGTCCTCTAATAAAATGTTAACCAATTATAAATTTGAATTTGAACTTAAAAAATTAACTGATCTAATGTGACCATCAATTGTTTTCAATTCTTTTAGTAAATAAAAATTGTAAGCTAA

mRNA sequence

CCTCCTTTCTATTCCGTTCGAAACCTTTGCAACTCTTCCCTCAAACCCTAGAAATCAAATCTCATGGCACCAAAGAAGGATAAGGCTCCTCCACCGTCCTCCAAGCCCGCTAAATCTGGCGGAGGAAAGCAGAAGAAGAAGGCAAGTTATGATAAGCTCCTTTCTGAAGCTCCCAAGTTCAAGCTGGTCACTCCGTCTATCCTTTCTGATAGGTTGAGGATCAATGGATCGCTCGCACGAAGAGCAATTAAGGATTTGATGGCACGGGGTTCCATCAGGATGATATCGTCTCACTCCAGTCAGCAGATCTATACAAGAGCAACCAACGCCTAAGGCTATGGCACGGGGTTCATATAAACTCTTTCCCGGAAGGCTATGGTTATGTAGTTCCCTTCCCATTTTGCAATTCCGAATTTTGTCCATCGATGAAATTATCTTTTAGTCTGTTCTAATGGCTGGATGATCTTTTAATGTGATGTGGTCTTTTATTTGTTAATCGGGTTGTTCGTGATGTGGTCTTTTATTCGTTAATTGGGTTTGGGTAGTTCGTGTTTTTTTTTTCTAGCTCTAATCATAATGTGCCAGTCGTGTAGAAGTTGGCTTTAGTTGCAAGGATTTGACAATAGTCTCAATGTCCTCTAATAAAATGTTAACCAATTATAAATTTGAATTTGAACTTAAAAAATTAACTGATCTAATGTGACCATCAATTGTTTTCAATTCTTTTAGTAAATAAAAATTGTAAGCTAA

Coding sequence (CDS)

ATGGCACCAAAGAAGGATAAGGCTCCTCCACCGTCCTCCAAGCCCGCTAAATCTGGCGGAGGAAAGCAGAAGAAGAAGGCAAGTTATGATAAGCTCCTTTCTGAAGCTCCCAAGTTCAAGCTGGTCACTCCGTCTATCCTTTCTGATAGGTTGAGGATCAATGGATCGCTCGCACGAAGAGCAATTAAGGATTTGATGGCACGGGGTTCCATCAGGATGATATCGTCTCACTCCAGTCAGCAGATCTATACAAGAGCAACCAACGCCTAA

Protein sequence

MAPKKDKAPPPSSKPAKSGGGKQKKKASYDKLLSEAPKFKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATNA
Homology
[Close]
BLAST of Cp4.1LG13g10590 vs. Swiss-Prot
Match: RS253_ARATH (40S ribosomal protein S25-3 OS=Arabidopsis thaliana GN=RPS25D PE=3 SV=2)

HSP 1 Score: 139.0 bits (349), Expect = 2.4e-32
Identity = 78/107 (72.90%), Postives = 87/107 (81.31%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKK-------------------ASYDKLLSEAPKFKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKK                   A+YDKLLSEAPKFKL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATN 89
           +TPSILSDRLRINGSLARRAI++LMA+G+IRM+S+HSSQQIYTRAT+
Sbjct: 61  ITPSILSDRLRINGSLARRAIRELMAKGTIRMVSAHSSQQIYTRATH 107

[Close]
BLAST of Cp4.1LG13g10590 vs. Swiss-Prot
Match: RS254_ARATH (40S ribosomal protein S25-4 OS=Arabidopsis thaliana GN=RPS25E PE=2 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.2e-31
Identity = 76/107 (71.03%), Postives = 86/107 (80.37%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKK-------------------ASYDKLLSEAPKFKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKK                   A+YDKLL+EAPKFKL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATN 89
           +TPSILSDR+RINGSLARRAI++LMA+G IRM+++HSSQQIYTRATN
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQQIYTRATN 107

[Close]
BLAST of Cp4.1LG13g10590 vs. Swiss-Prot
Match: RS252_ARATH (40S ribosomal protein S25-2 OS=Arabidopsis thaliana GN=RPS25B PE=2 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.6e-31
Identity = 76/107 (71.03%), Postives = 85/107 (79.44%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKK-------------------ASYDKLLSEAPKFKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKK                    +YDKLL+EAPKFKL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATN 89
           +TPSILSDR+RINGSLARRAI++LMA+G IRM+S+HSSQQIYTRATN
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAHSSQQIYTRATN 107

[Close]
BLAST of Cp4.1LG13g10590 vs. Swiss-Prot
Match: RS25_SOLLC (40S ribosomal protein S25 OS=Solanum lycopersicum GN=RPS25 PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 4.6e-31
Identity = 75/107 (70.09%), Postives = 87/107 (81.31%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKK-------------------KASYDKLLSEAPKFKL 60
           MAPKK +APPPSSKPAKSGGGKQKK                   K++YDKLLSEAPK+KL
Sbjct: 1   MAPKKAQAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDKSTYDKLLSEAPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATN 89
           +TPS+LSDRLRI+GSLAR+AI+DLMARGSIRM+S+H+SQQIYTRATN
Sbjct: 61  ITPSVLSDRLRISGSLARKAIRDLMARGSIRMVSAHASQQIYTRATN 107

[Close]
BLAST of Cp4.1LG13g10590 vs. Swiss-Prot
Match: RS251_ARATH (40S ribosomal protein S25-1 OS=Arabidopsis thaliana GN=RPS25A PE=3 SV=3)

HSP 1 Score: 133.3 bits (334), Expect = 1.3e-30
Identity = 75/106 (70.75%), Postives = 84/106 (79.25%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKK-------------------ASYDKLLSEAPKFKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKK                   A+YDKL+SEAPKFKL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLMSEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRAT 88
           +TPSILSDRLRINGSLAR+AI+DLM +G+IRM+S+HSSQQI TRAT
Sbjct: 61  ITPSILSDRLRINGSLARKAIRDLMVKGTIRMVSTHSSQQINTRAT 106

[Close]
BLAST of Cp4.1LG13g10590 vs. TrEMBL
Match: A9NKH7_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 2.9e-32
Identity = 83/107 (77.57%), Postives = 88/107 (82.24%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKK-------------------ASYDKLLSEAPKFKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKK                   A+YDKLLSEAPK+KL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATN 89
           +TPSILSDRLRINGSLAR+AIKDLMARGSIRMIS+HSSQQIYTRATN
Sbjct: 61  ITPSILSDRLRINGSLARKAIKDLMARGSIRMISAHSSQQIYTRATN 107

[Close]
BLAST of Cp4.1LG13g10590 vs. TrEMBL
Match: V4RSB2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029626mg PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 2.9e-32
Identity = 83/107 (77.57%), Postives = 88/107 (82.24%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKK-------------------ASYDKLLSEAPKFKL 60
           MAPKKDKAPPP+SKPAKSGGGKQKKK                   A+YDKLLSEAPKFKL
Sbjct: 1   MAPKKDKAPPPASKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATN 89
           +TPSILSDRLRINGSLARRAIKDLMARGSIRMIS+H+SQQIYTRATN
Sbjct: 61  ITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRATN 107

[Close]
BLAST of Cp4.1LG13g10590 vs. TrEMBL
Match: A0A067ESG8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033931mg PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 2.9e-32
Identity = 83/107 (77.57%), Postives = 88/107 (82.24%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKK-------------------ASYDKLLSEAPKFKL 60
           MAPKKDKAPPP+SKPAKSGGGKQKKK                   A+YDKLLSEAPKFKL
Sbjct: 1   MAPKKDKAPPPASKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATN 89
           +TPSILSDRLRINGSLARRAIKDLMARGSIRMIS+H+SQQIYTRATN
Sbjct: 61  ITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRATN 107

[Close]
BLAST of Cp4.1LG13g10590 vs. TrEMBL
Match: A0A067JDX0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03002 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 6.5e-32
Identity = 83/107 (77.57%), Postives = 87/107 (81.31%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKK-------------------ASYDKLLSEAPKFKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKK                   A+YDKLLSE PK+KL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMILFDQATYDKLLSEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATN 89
           VTPSILSDRLRINGSLARRAIKDLMARGSIRMIS+H+SQQIYTRATN
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRATN 107

[Close]
BLAST of Cp4.1LG13g10590 vs. TrEMBL
Match: A0A067JTK0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21007 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 8.5e-32
Identity = 82/107 (76.64%), Postives = 87/107 (81.31%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKK-------------------ASYDKLLSEAPKFKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKK                   A+YDKLLSE PK+KL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMILFDQATYDKLLSEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATN 89
           VTPSILSDRLR+NGSLARRAIKDLMARGSIRMIS+H+SQQIYTRATN
Sbjct: 61  VTPSILSDRLRVNGSLARRAIKDLMARGSIRMISAHASQQIYTRATN 107

[Close]
BLAST of Cp4.1LG13g10590 vs. TAIR10
Match: AT4G34555.1 (AT4G34555.1 Ribosomal protein S25 family protein)

HSP 1 Score: 139.0 bits (349), Expect = 1.4e-33
Identity = 78/107 (72.90%), Postives = 87/107 (81.31%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKK-------------------ASYDKLLSEAPKFKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKK                   A+YDKLLSEAPKFKL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATN 89
           +TPSILSDRLRINGSLARRAI++LMA+G+IRM+S+HSSQQIYTRAT+
Sbjct: 61  ITPSILSDRLRINGSLARRAIRELMAKGTIRMVSAHSSQQIYTRATH 107

[Close]
BLAST of Cp4.1LG13g10590 vs. TAIR10
Match: AT4G39200.1 (AT4G39200.1 Ribosomal protein S25 family protein)

HSP 1 Score: 136.7 bits (343), Expect = 6.8e-33
Identity = 76/107 (71.03%), Postives = 86/107 (80.37%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKK-------------------ASYDKLLSEAPKFKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKK                   A+YDKLL+EAPKFKL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATN 89
           +TPSILSDR+RINGSLARRAI++LMA+G IRM+++HSSQQIYTRATN
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQQIYTRATN 107

[Close]
BLAST of Cp4.1LG13g10590 vs. TAIR10
Match: AT2G21580.1 (AT2G21580.1 Ribosomal protein S25 family protein)

HSP 1 Score: 136.3 bits (342), Expect = 8.9e-33
Identity = 76/107 (71.03%), Postives = 85/107 (79.44%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKK-------------------ASYDKLLSEAPKFKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKK                    +YDKLL+EAPKFKL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATN 89
           +TPSILSDR+RINGSLARRAI++LMA+G IRM+S+HSSQQIYTRATN
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAHSSQQIYTRATN 107

[Close]
BLAST of Cp4.1LG13g10590 vs. TAIR10
Match: AT2G16360.1 (AT2G16360.1 Ribosomal protein S25 family protein)

HSP 1 Score: 102.8 bits (255), Expect = 1.1e-22
Identity = 58/88 (65.91%), Postives = 70/88 (79.55%), Query Frame = 1 

Query: 9   PPPSSKPAKSGGGKQKKK---------ASYDKLLSEAPKFKLVTPSILSDRLRINGSLAR 68
           P P ++  K   GKQK+K         A+YDKL+SEAPKFKL+TPSILSDRLRINGSLAR
Sbjct: 35  PNPVAESRKRSKGKQKEKVNNMVLFDQATYDKLMSEAPKFKLITPSILSDRLRINGSLAR 94

Query: 69  RAIKDLMARGSIRMISSHSSQQIYTRAT 88
           +AI+DLM +G+IRM+S+HSSQQI TRAT
Sbjct: 95  KAIRDLMVKGTIRMVSTHSSQQINTRAT 122

[Close]
BLAST of Cp4.1LG13g10590 vs. NCBI nr
Match: gi|567863138|ref|XP_006424223.1| (hypothetical protein CICLE_v10029626mg [Citrus clementina])

HSP 1 Score: 145.6 bits (366), Expect = 4.2e-32
Identity = 83/107 (77.57%), Postives = 88/107 (82.24%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKK-------------------ASYDKLLSEAPKFKL 60
           MAPKKDKAPPP+SKPAKSGGGKQKKK                   A+YDKLLSEAPKFKL
Sbjct: 1   MAPKKDKAPPPASKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATN 89
           +TPSILSDRLRINGSLARRAIKDLMARGSIRMIS+H+SQQIYTRATN
Sbjct: 61  ITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRATN 107

[Close]
BLAST of Cp4.1LG13g10590 vs. NCBI nr
Match: gi|116779097|gb|ABK21138.1| (unknown [Picea sitchensis])

HSP 1 Score: 145.6 bits (366), Expect = 4.2e-32
Identity = 83/107 (77.57%), Postives = 88/107 (82.24%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKK-------------------ASYDKLLSEAPKFKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKK                   A+YDKLLSEAPK+KL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATN 89
           +TPSILSDRLRINGSLAR+AIKDLMARGSIRMIS+HSSQQIYTRATN
Sbjct: 61  ITPSILSDRLRINGSLARKAIKDLMARGSIRMISAHSSQQIYTRATN 107

[Close]
BLAST of Cp4.1LG13g10590 vs. NCBI nr
Match: gi|659083221|ref|XP_008442240.1| (PREDICTED: 40S ribosomal protein S25-2 [Cucumis melo])

HSP 1 Score: 145.2 bits (365), Expect = 5.4e-32
Identity = 83/107 (77.57%), Postives = 87/107 (81.31%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKK-------------------ASYDKLLSEAPKFKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKK                    +YDKLLSEAPKFKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATN 89
           +TPSILSDRLRINGSLARRAIKDLMARGSIR+IS+HSSQQIYTRATN
Sbjct: 61  ITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATN 107

[Close]
BLAST of Cp4.1LG13g10590 vs. NCBI nr
Match: gi|470106618|ref|XP_004289660.1| (PREDICTED: 40S ribosomal protein S25 [Fragaria vesca subsp. vesca])

HSP 1 Score: 144.8 bits (364), Expect = 7.1e-32
Identity = 82/107 (76.64%), Postives = 88/107 (82.24%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKK-------------------ASYDKLLSEAPKFKL 60
           MAPKK+KAPPPSSKPAKSGGGKQKKK                   A+YDKLLSEAPKFKL
Sbjct: 1   MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATN 89
           +TPSILSDRLRINGSLARRAIKDLMARGSIRM+S+H+SQQIYTRATN
Sbjct: 61  ITPSILSDRLRINGSLARRAIKDLMARGSIRMVSAHASQQIYTRATN 107

[Close]
BLAST of Cp4.1LG13g10590 vs. NCBI nr
Match: gi|802774697|ref|XP_012090801.1| (PREDICTED: 40S ribosomal protein S25 [Jatropha curcas])

HSP 1 Score: 144.4 bits (363), Expect = 9.3e-32
Identity = 83/107 (77.57%), Postives = 87/107 (81.31%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKK-------------------ASYDKLLSEAPKFKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKK                   A+YDKLLSE PK+KL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMILFDQATYDKLLSEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISSHSSQQIYTRATN 89
           VTPSILSDRLRINGSLARRAIKDLMARGSIRMIS+H+SQQIYTRATN
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRATN 107

The following BLAST results are available for this feature:
BLAST of Cp4.1LG13g10590 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RS253_ARATH2.4e-3272.9040S ribosomal protein S25-3 OS=Arabidopsis thaliana GN=RPS25D PE=3 SV=2[more]
RS254_ARATH1.2e-3171.0340S ribosomal protein S25-4 OS=Arabidopsis thaliana GN=RPS25E PE=2 SV=1[more]
RS252_ARATH1.6e-3171.0340S ribosomal protein S25-2 OS=Arabidopsis thaliana GN=RPS25B PE=2 SV=1[more]
RS25_SOLLC4.6e-3170.0940S ribosomal protein S25 OS=Solanum lycopersicum GN=RPS25 PE=3 SV=1[more]
RS251_ARATH1.3e-3070.7540S ribosomal protein S25-1 OS=Arabidopsis thaliana GN=RPS25A PE=3 SV=3[more]
BLAST of Cp4.1LG13g10590 vs. TrEMBL
Match NameE-valueIdentityDescription
A9NKH7_PICSI2.9e-3277.57Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1[more]
V4RSB2_9ROSI2.9e-3277.57Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029626mg PE=4 SV=1[more]
A0A067ESG8_CITSI2.9e-3277.57Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033931mg PE=4 SV=1[more]
A0A067JDX0_JATCU6.5e-3277.57Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03002 PE=4 SV=1[more]
A0A067JTK0_JATCU8.5e-3276.64Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21007 PE=4 SV=1[more]
BLAST of Cp4.1LG13g10590 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G34555.11.4e-3372.90 Ribosomal protein S25 family protein[more]
AT4G39200.16.8e-3371.03 Ribosomal protein S25 family protein[more]
AT2G21580.18.9e-3371.03 Ribosomal protein S25 family protein[more]
AT2G16360.11.1e-2265.91 Ribosomal protein S25 family protein[more]
BLAST of Cp4.1LG13g10590 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|567863138|ref|XP_006424223.1|4.2e-3277.57hypothetical protein CICLE_v10029626mg [Citrus clementina][more]
gi|116779097|gb|ABK21138.1|4.2e-3277.57unknown [Picea sitchensis][more]
gi|659083221|ref|XP_008442240.1|5.4e-3277.57PREDICTED: 40S ribosomal protein S25-2 [Cucumis melo][more]
gi|470106618|ref|XP_004289660.1|7.1e-3276.64PREDICTED: 40S ribosomal protein S25 [Fragaria vesca subsp. vesca][more]
gi|802774697|ref|XP_012090801.1|9.3e-3277.57PREDICTED: 40S ribosomal protein S25 [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004977Ribosomal_S25
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005840 ribosome
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG13g10590.1Cp4.1LG13g10590.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004977Ribosomal protein S25PRODOMPD012268coord: 29..89
score: 2.0
IPR004977Ribosomal protein S25PANTHERPTHR12850FAMILY NOT NAMEDcoord: 5..89
score: 4.0
IPR004977Ribosomal protein S25PFAMPF03297Ribosomal_S25coord: 26..86
score: 1.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG13g10590MELO3C019896.2Melon (DHL92) v3.6.1cpemedB196
Cp4.1LG13g10590CsaV3_6G004250Cucumber (Chinese Long) v3cpecucB0237
Cp4.1LG13g10590Bhi04G001322Wax gourdcpewgoB0248
Cp4.1LG13g10590CsGy6G003940Cucumber (Gy14) v2cgybcpeB740
Cp4.1LG13g10590Carg04622Silver-seed gourdcarcpeB0962
Cp4.1LG13g10590Carg01677Silver-seed gourdcarcpeB1157
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG13g10590Cp4.1LG01g25120Cucurbita pepo (Zucchini)cpecpeB199
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG13g10590Cucumber (Gy14) v1cgycpeB0951
Cp4.1LG13g10590Cucurbita maxima (Rimu)cmacpeB305
Cp4.1LG13g10590Cucurbita maxima (Rimu)cmacpeB705
Cp4.1LG13g10590Cucurbita moschata (Rifu)cmocpeB268
Cp4.1LG13g10590Cucurbita moschata (Rifu)cmocpeB657
Cp4.1LG13g10590Wild cucumber (PI 183967)cpecpiB198
Cp4.1LG13g10590Cucumber (Chinese Long) v2cpecuB197
Cp4.1LG13g10590Bottle gourd (USVL1VR-Ls)cpelsiB158
Cp4.1LG13g10590Watermelon (Charleston Gray)cpewcgB183
Cp4.1LG13g10590Watermelon (97103) v1cpewmB173
Cp4.1LG13g10590Melon (DHL92) v3.5.1cpemeB164