Cp4.1LG09g03710 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG09g03710
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Description40S ribosomal protein S25
LocationCp4.1LG09 : 2235012 .. 2237010 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAGGCCCATTTATGTGAAGTTCCCAAACCCTAGCTCCACGAAGGCTGCGAAGGGTTTTATTTCTTTACCTATCAGCGTGCTCTTCTAAGTTCGTTGTGTTTGCTCCCTCTCTTTTCTTCTGCGTCTTCTTCAACAGATCCAGCTCGGAACCCTTCGGCGGCGGAACTTTGATACGATGGTTCGTAATCGGCTTTACTTTCTTTTACTTGTTTCTGAATTCTCTCTTTAAGCGACTAAGGATTAGAAATCGGCGGGAAGTTTGAAGCTATCTGTATTGATAATGTGTTTGAATGAACTTCTATTGTTCTTTGATTATCATTCTTTCATCGGAAGTCCGACAAGGAATGTTGTTTGTTATTTTTCTGTTTTGGTAGTCGTGCTTGCAATTTGTTCTCTTACTTTGGTGGATTGTATGTGTTTAGGCGCCAAAGAAGGATAAAGCTCCTCCACCGTCCTCGAAGCCTGCTAAATCTGGCGGAGGAAAGCAGAAGAAGAAGGTCAGATTCTTGTTACAGTATTTTCGACTTTACTTAAATCCATGGCTATATTATTGTAGTTGATCCTGGCTATTCCTTTAGCCGTTCTGTCTGCCGTGGATTATTGTTCAAGTTCTTGGGTGATTCTACGATGTGTTGTGGGAGAAATGTTTCTAATACTTGTACTAAATTCGAAAATGTTGTTTCGTTTCAAACTGTATGAGGAAAATGAAGAAACATCGAAATAAGAGGACTTATGTTGTTTATAGCAATCCTGTCAACTGTGAATTGTTGATTCTAAATGCTAAGATTGCAGTTTTCTCATCTATAATTCTGTTTGTCATTGTTAATATAACAGAAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTCAACAACATGGTTTTGTTTGATCAAGGAACCTATGACAAGCTTCTCGTTGAAGTTCCCAAGTACAAGCTTGTCACTCCTTCAATCTTGTCCGACAGGTTGAGGGTAAGTTTTTCAACCTCGTCTCATCCATTATGTAGAACATTTTTCATGTTCTTGATTGCATATTCTATCACAATTATGTTATTCTAGTCAATTTGTGATGCTTCCTGATATGAACAAAATGAATGTTCATACATTTTCATTCAAAAATAGTTTGAATAATTAATTTGATCCATTGATTCTACCCGACTGCTTTTTTTCATTCATGAGTAAGAGAGTTTCAGTAAAGTTTATTGAAACACTTCCCCTTCCCCCTACCCCTCTTCTCTGTACTTTGTAGATTTTTGTTTTTCTCTAAATTTGCCCGTTGTGTGTCTTGTTTTCTTTTTGTCTCAGAAAATCAATTGGGGTTTTCCGAATAAGAGGATAAATAAGTAATAGATTTCCATCCCTAGTTCAAAAAAGTGTACCAAATATCTAATGATCTATAAATGCACAAGGGCCCAAGTCTTTTTTGTCTATGAGGAAGAAAATTAGCATTAGATCCTAGTGTATGTTATGTTATTTTGGAACATGTTGGTTGCAGCCAACCACTATTCGACATCATCGAGTTCTAACAATTATAAGTTTTTTTTTAAGATTCAAAAGGTCTGTTGAGCGCATCATGAATATCATAGAAGATTCAAACACTTACCCTGAATCAATACAATTTGTTATTTGATAAATGGTTCTCTGCCATTTCAATTTTCAGATCAATGGATCGCTAGCACGAAGAGCAATCAAAGATCTGATGGCCAGAGGTCTCATCAGAATGGTGTCTTCACATTCGAGCCAGGAGATCTACACAAGGGCCACCAATACCTAATTTCCTTTCATATCTTTTTGAGTTGTCATGAATTAGCCTTGTTACTCCAGTTTCTGCATGTTGCTTCTAATATCTTCACATGGATCATAGAATTTTGCAATTTTTTTTTTTTGAATTTTGCCATTTGGAGAGGAATTGTCTGGTGTTATCTTCCTTGTTAATTACTATTTCTAAATTTATCAAGTTCCCAAACATTTGAAAGTTTATCGATACTCAATAGTTATACTT

mRNA sequence

CAGGCCCATTTATGTGAAGTTCCCAAACCCTAGCTCCACGAAGGCTGCGAAGGGTTTTATTTCTTTACCTATCAGCGTGCTCTTCTAAGTTCGTTGTGTTTGCTCCCTCTCTTTTCTTCTGCGTCTTCTTCAACAGATCCAGCTCGGAACCCTTCGGCGGCGGAACTTTGATACGATGGCGCCAAAGAAGGATAAAGCTCCTCCACCGTCCTCGAAGCCTGCTAAATCTGGCGGAGGAAAGCAGAAGAAGAAGAAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTCAACAACATGGTTTTGTTTGATCAAGGAACCTATGACAAGCTTCTCGTTGAAGTTCCCAAGTACAAGCTTGTCACTCCTTCAATCTTGTCCGACAGGTTGAGGATCAATGGATCGCTAGCACGAAGAGCAATCAAAGATCTGATGGCCAGAGGTCTCATCAGAATGGTGTCTTCACATTCGAGCCAGGAGATCTACACAAGGGCCACCAATACCTAATTTCCTTTCATATCTTTTTGAGTTGTCATGAATTAGCCTTGTTACTCCAGTTTCTGCATGTTGCTTCTAATATCTTCACATGGATCATAGAATTTTGCAATTTTTTTTTTTTGAATTTTGCCATTTGGAGAGGAATTGTCTGGTGTTATCTTCCTTGTTAATTACTATTTCTAAATTTATCAAGTTCCCAAACATTTGAAAGTTTATCGATACTCAATAGTTATACTT

Coding sequence (CDS)

ATGGCGCCAAAGAAGGATAAAGCTCCTCCACCGTCCTCGAAGCCTGCTAAATCTGGCGGAGGAAAGCAGAAGAAGAAGAAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTCAACAACATGGTTTTGTTTGATCAAGGAACCTATGACAAGCTTCTCGTTGAAGTTCCCAAGTACAAGCTTGTCACTCCTTCAATCTTGTCCGACAGGTTGAGGATCAATGGATCGCTAGCACGAAGAGCAATCAAAGATCTGATGGCCAGAGGTCTCATCAGAATGGTGTCTTCACATTCGAGCCAGGAGATCTACACAAGGGCCACCAATACCTAA

Protein sequence

MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTPSILSDRLRINGSLARRAIKDLMARGLIRMVSSHSSQEIYTRATNT
Homology
[Close]
BLAST of Cp4.1LG09g03710 vs. Swiss-Prot
Match: RS252_ARATH (40S ribosomal protein S25-2 OS=Arabidopsis thaliana GN=RPS25B PE=2 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 3.3e-47
Identity = 97/108 (89.81%), Postives = 105/108 (97.22%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLL E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSSHSSQEIYTRATNT 109
           +TPSILSDR+RINGSLARRAI++LMA+GLIRMVS+HSSQ+IYTRATNT
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAHSSQQIYTRATNT 108

[Close]
BLAST of Cp4.1LG09g03710 vs. Swiss-Prot
Match: RS254_ARATH (40S ribosomal protein S25-4 OS=Arabidopsis thaliana GN=RPS25E PE=2 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 8.0e-46
Identity = 94/108 (87.04%), Postives = 104/108 (96.30%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLL E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSSHSSQEIYTRATNT 109
           +TPSILSDR+RINGSLARRAI++LMA+G+IRMV++HSSQ+IYTRATNT
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQQIYTRATNT 108

[Close]
BLAST of Cp4.1LG09g03710 vs. Swiss-Prot
Match: RS253_ARATH (40S ribosomal protein S25-3 OS=Arabidopsis thaliana GN=RPS25D PE=3 SV=2)

HSP 1 Score: 180.6 bits (457), Expect = 8.9e-45
Identity = 94/107 (87.85%), Postives = 102/107 (95.33%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLL E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSSHSSQEIYTRATN 108
           +TPSILSDRLRINGSLARRAI++LMA+G IRMVS+HSSQ+IYTRAT+
Sbjct: 61  ITPSILSDRLRINGSLARRAIRELMAKGTIRMVSAHSSQQIYTRATH 107

[Close]
BLAST of Cp4.1LG09g03710 vs. Swiss-Prot
Match: RS25_SOLLC (40S ribosomal protein S25 OS=Solanum lycopersicum GN=RPS25 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 2.6e-44
Identity = 93/108 (86.11%), Postives = 103/108 (95.37%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKK +APPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFD+ TYDKLL E PKYKL
Sbjct: 1   MAPKKAQAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDKSTYDKLLSEAPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSSHSSQEIYTRATNT 109
           +TPS+LSDRLRI+GSLAR+AI+DLMARG IRMVS+H+SQ+IYTRATNT
Sbjct: 61  ITPSVLSDRLRISGSLARKAIRDLMARGSIRMVSAHASQQIYTRATNT 108

[Close]
BLAST of Cp4.1LG09g03710 vs. Swiss-Prot
Match: RS251_ARATH (40S ribosomal protein S25-1 OS=Arabidopsis thaliana GN=RPS25A PE=3 SV=3)

HSP 1 Score: 174.9 bits (442), Expect = 4.9e-43
Identity = 91/106 (85.85%), Postives = 99/106 (93.40%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKL+ E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLMSEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSSHSSQEIYTRAT 107
           +TPSILSDRLRINGSLAR+AI+DLM +G IRMVS+HSSQ+I TRAT
Sbjct: 61  ITPSILSDRLRINGSLARKAIRDLMVKGTIRMVSTHSSQQINTRAT 106

[Close]
BLAST of Cp4.1LG09g03710 vs. TrEMBL
Match: A0A0A0LW64_CUCSA (40S ribosomal protein S25 OS=Cucumis sativus GN=Csa_1G573590 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 2.3e-47
Identity = 105/108 (97.22%), Postives = 107/108 (99.07%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSSHSSQEIYTRATNT 109
           VT SILSDRLRINGSLARRAIKDLMARGLIRMVS+H+SQEIYTRATNT
Sbjct: 61  VTLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 108

[Close]
BLAST of Cp4.1LG09g03710 vs. TrEMBL
Match: A0A0A0KB40_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G045180 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.1e-46
Identity = 101/108 (93.52%), Postives = 106/108 (98.15%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLL EVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSSHSSQEIYTRATNT 109
           VTPSILSDR+R+NGSLARRAIKDLMARG IRM+S+HSSQ+IYTRATNT
Sbjct: 61  VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 108

[Close]
BLAST of Cp4.1LG09g03710 vs. TrEMBL
Match: A0A059BGE9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02690 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 2.5e-46
Identity = 99/108 (91.67%), Postives = 107/108 (99.07%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKK+KAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKL+ EVPKYKL
Sbjct: 1   MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLVSEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSSHSSQEIYTRATNT 109
           +TPSILSDRLR+NGSLARRAIKDLMARGLIRM+S+H+SQ+IYTRATNT
Sbjct: 61  ITPSILSDRLRVNGSLARRAIKDLMARGLIRMISAHASQQIYTRATNT 108

[Close]
BLAST of Cp4.1LG09g03710 vs. TrEMBL
Match: B9SCV0_RICCO (40S ribosomal protein S25, putative OS=Ricinus communis GN=RCOM_1281730 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 7.3e-46
Identity = 100/108 (92.59%), Postives = 105/108 (97.22%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLL EVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSSHSSQEIYTRATNT 109
           +TPSILSDRLRINGSLARRAIKDLMARG IRM+S+H+SQ+IYTRATNT
Sbjct: 61  ITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRATNT 108

[Close]
BLAST of Cp4.1LG09g03710 vs. TrEMBL
Match: A0A067JDX0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03002 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 7.3e-46
Identity = 100/108 (92.59%), Postives = 105/108 (97.22%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNM+LFDQ TYDKLL EVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMILFDQATYDKLLSEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSSHSSQEIYTRATNT 109
           VTPSILSDRLRINGSLARRAIKDLMARG IRM+S+H+SQ+IYTRATNT
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRATNT 108

[Close]
BLAST of Cp4.1LG09g03710 vs. TAIR10
Match: AT2G21580.1 (AT2G21580.1 Ribosomal protein S25 family protein)

HSP 1 Score: 188.7 bits (478), Expect = 1.8e-48
Identity = 97/108 (89.81%), Postives = 105/108 (97.22%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLL E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSSHSSQEIYTRATNT 109
           +TPSILSDR+RINGSLARRAI++LMA+GLIRMVS+HSSQ+IYTRATNT
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAHSSQQIYTRATNT 108

[Close]
BLAST of Cp4.1LG09g03710 vs. TAIR10
Match: AT4G39200.1 (AT4G39200.1 Ribosomal protein S25 family protein)

HSP 1 Score: 184.1 bits (466), Expect = 4.5e-47
Identity = 94/108 (87.04%), Postives = 104/108 (96.30%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLL E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSSHSSQEIYTRATNT 109
           +TPSILSDR+RINGSLARRAI++LMA+G+IRMV++HSSQ+IYTRATNT
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQQIYTRATNT 108

[Close]
BLAST of Cp4.1LG09g03710 vs. TAIR10
Match: AT4G34555.1 (AT4G34555.1 Ribosomal protein S25 family protein)

HSP 1 Score: 180.6 bits (457), Expect = 5.0e-46
Identity = 94/107 (87.85%), Postives = 102/107 (95.33%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLL E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSSHSSQEIYTRATN 108
           +TPSILSDRLRINGSLARRAI++LMA+G IRMVS+HSSQ+IYTRAT+
Sbjct: 61  ITPSILSDRLRINGSLARRAIRELMAKGTIRMVSAHSSQQIYTRATH 107

[Close]
BLAST of Cp4.1LG09g03710 vs. TAIR10
Match: AT2G16360.1 (AT2G16360.1 Ribosomal protein S25 family protein)

HSP 1 Score: 126.7 bits (317), Expect = 8.6e-30
Identity = 65/83 (78.31%), Postives = 75/83 (90.36%), Query Frame = 1 

Query: 24  KKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTPSILSDRLRINGSLARRAIKD 83
           + +K SKGKQKEKVNNMVLFDQ TYDKL+ E PK+KL+TPSILSDRLRINGSLAR+AI+D
Sbjct: 40  ESRKRSKGKQKEKVNNMVLFDQATYDKLMSEAPKFKLITPSILSDRLRINGSLARKAIRD 99

Query: 84  LMARGLIRMVSSHSSQEIYTRAT 107
           LM +G IRMVS+HSSQ+I TRAT
Sbjct: 100 LMVKGTIRMVSTHSSQQINTRAT 122

[Close]
BLAST of Cp4.1LG09g03710 vs. NCBI nr
Match: gi|659099709|ref|XP_008450738.1| (PREDICTED: 40S ribosomal protein S25-2-like [Cucumis melo])

HSP 1 Score: 199.9 bits (507), Expect = 2.3e-48
Identity = 106/108 (98.15%), Postives = 108/108 (100.00%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSSHSSQEIYTRATNT 109
           VTPSILSDRLRINGSLARRAIKDLMARGLIRMVS+H+SQEIYTRATNT
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 108

[Close]
BLAST of Cp4.1LG09g03710 vs. NCBI nr
Match: gi|449435736|ref|XP_004135650.1| (PREDICTED: 40S ribosomal protein S25-2-like [Cucumis sativus])

HSP 1 Score: 196.1 bits (497), Expect = 3.3e-47
Identity = 105/108 (97.22%), Postives = 107/108 (99.07%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSSHSSQEIYTRATNT 109
           VT SILSDRLRINGSLARRAIKDLMARGLIRMVS+H+SQEIYTRATNT
Sbjct: 61  VTLSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 108

[Close]
BLAST of Cp4.1LG09g03710 vs. NCBI nr
Match: gi|659113490|ref|XP_008456601.1| (PREDICTED: 40S ribosomal protein S25-2-like [Cucumis melo])

HSP 1 Score: 194.9 bits (494), Expect = 7.3e-47
Identity = 103/108 (95.37%), Postives = 106/108 (98.15%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLL EVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSSHSSQEIYTRATNT 109
           VTPSILSDRLRINGSLARRAIKDLMARG IRM+S+HSSQ+IYTRATNT
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 108

[Close]
BLAST of Cp4.1LG09g03710 vs. NCBI nr
Match: gi|449446287|ref|XP_004140903.1| (PREDICTED: 40S ribosomal protein S25-2 [Cucumis sativus])

HSP 1 Score: 193.7 bits (491), Expect = 1.6e-46
Identity = 101/108 (93.52%), Postives = 106/108 (98.15%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLL EVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSSHSSQEIYTRATNT 109
           VTPSILSDR+R+NGSLARRAIKDLMARG IRM+S+HSSQ+IYTRATNT
Sbjct: 61  VTPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 108

[Close]
BLAST of Cp4.1LG09g03710 vs. NCBI nr
Match: gi|702422766|ref|XP_010067131.1| (PREDICTED: 40S ribosomal protein S25-2-like [Eucalyptus grandis])

HSP 1 Score: 192.6 bits (488), Expect = 3.6e-46
Identity = 99/108 (91.67%), Postives = 107/108 (99.07%), Query Frame = 1 

Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKK+KAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKL+ EVPKYKL
Sbjct: 1   MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLVSEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSSHSSQEIYTRATNT 109
           +TPSILSDRLR+NGSLARRAIKDLMARGLIRM+S+H+SQ+IYTRATNT
Sbjct: 61  ITPSILSDRLRVNGSLARRAIKDLMARGLIRMISAHASQQIYTRATNT 108

The following BLAST results are available for this feature:
BLAST of Cp4.1LG09g03710 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RS252_ARATH3.3e-4789.8140S ribosomal protein S25-2 OS=Arabidopsis thaliana GN=RPS25B PE=2 SV=1[more]
RS254_ARATH8.0e-4687.0440S ribosomal protein S25-4 OS=Arabidopsis thaliana GN=RPS25E PE=2 SV=1[more]
RS253_ARATH8.9e-4587.8540S ribosomal protein S25-3 OS=Arabidopsis thaliana GN=RPS25D PE=3 SV=2[more]
RS25_SOLLC2.6e-4486.1140S ribosomal protein S25 OS=Solanum lycopersicum GN=RPS25 PE=3 SV=1[more]
RS251_ARATH4.9e-4385.8540S ribosomal protein S25-1 OS=Arabidopsis thaliana GN=RPS25A PE=3 SV=3[more]
BLAST of Cp4.1LG09g03710 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LW64_CUCSA2.3e-4797.2240S ribosomal protein S25 OS=Cucumis sativus GN=Csa_1G573590 PE=4 SV=1[more]
A0A0A0KB40_CUCSA1.1e-4693.52Uncharacterized protein OS=Cucumis sativus GN=Csa_6G045180 PE=4 SV=1[more]
A0A059BGE9_EUCGR2.5e-4691.67Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02690 PE=4 SV=1[more]
B9SCV0_RICCO7.3e-4692.5940S ribosomal protein S25, putative OS=Ricinus communis GN=RCOM_1281730 PE=4 SV=... [more]
A0A067JDX0_JATCU7.3e-4692.59Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03002 PE=4 SV=1[more]
BLAST of Cp4.1LG09g03710 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G21580.11.8e-4889.81 Ribosomal protein S25 family protein[more]
AT4G39200.14.5e-4787.04 Ribosomal protein S25 family protein[more]
AT4G34555.15.0e-4687.85 Ribosomal protein S25 family protein[more]
AT2G16360.18.6e-3078.31 Ribosomal protein S25 family protein[more]
BLAST of Cp4.1LG09g03710 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659099709|ref|XP_008450738.1|2.3e-4898.15PREDICTED: 40S ribosomal protein S25-2-like [Cucumis melo][more]
gi|449435736|ref|XP_004135650.1|3.3e-4797.22PREDICTED: 40S ribosomal protein S25-2-like [Cucumis sativus][more]
gi|659113490|ref|XP_008456601.1|7.3e-4795.37PREDICTED: 40S ribosomal protein S25-2-like [Cucumis melo][more]
gi|449446287|ref|XP_004140903.1|1.6e-4693.52PREDICTED: 40S ribosomal protein S25-2 [Cucumis sativus][more]
gi|702422766|ref|XP_010067131.1|3.6e-4691.67PREDICTED: 40S ribosomal protein S25-2-like [Eucalyptus grandis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011991Winged helix-turn-helix DNA-binding domain
IPR004977Ribosomal_S25
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005840 ribosome
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG09g03710.1Cp4.1LG09g03710.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004977Ribosomal protein S25PRODOMPD012268coord: 40..107
score: 8.0
IPR004977Ribosomal protein S25PANTHERPTHR12850FAMILY NOT NAMEDcoord: 5..108
score: 1.4
IPR004977Ribosomal protein S25PFAMPF03297Ribosomal_S25coord: 8..105
score: 1.2
IPR011991Winged helix-turn-helix DNA-binding domainGENE3DG3DSA:1.10.10.10coord: 51..97
score: 8.

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG09g03710CmaCh18G009500Cucurbita maxima (Rimu)cmacpeB415
Cp4.1LG09g03710Cla013693Watermelon (97103) v1cpewmB023
Cp4.1LG09g03710ClCG08G008280Watermelon (Charleston Gray)cpewcgB055
Cp4.1LG09g03710Carg04622Silver-seed gourdcarcpeB0958
Cp4.1LG09g03710Carg18994Silver-seed gourdcarcpeB1464
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG09g03710Cp4.1LG01g25120Cucurbita pepo (Zucchini)cpecpeB038
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG09g03710Cucurbita moschata (Rifu)cmocpeB376
Cp4.1LG09g03710Cucurbita moschata (Rifu)cmocpeB651
Cp4.1LG09g03710Wild cucumber (PI 183967)cpecpiB036
Cp4.1LG09g03710Cucumber (Chinese Long) v2cpecuB041
Cp4.1LG09g03710Bottle gourd (USVL1VR-Ls)cpelsiB032
Cp4.1LG09g03710Watermelon (Charleston Gray)cpewcgB045
Cp4.1LG09g03710Watermelon (97103) v1cpewmB031
Cp4.1LG09g03710Melon (DHL92) v3.5.1cpemeB024
Cp4.1LG09g03710Cucumber (Gy14) v2cgybcpeB581
Cp4.1LG09g03710Melon (DHL92) v3.6.1cpemedB028
Cp4.1LG09g03710Silver-seed gourdcarcpeB1169
Cp4.1LG09g03710Cucumber (Chinese Long) v3cpecucB0043
Cp4.1LG09g03710Wax gourdcpewgoB0055
Cp4.1LG09g03710Cucurbita pepo (Zucchini)cpecpeB040
Cp4.1LG09g03710Cucumber (Gy14) v1cgycpeB0745
Cp4.1LG09g03710Cucurbita maxima (Rimu)cmacpeB699
Cp4.1LG09g03710Cucurbita maxima (Rimu)cmacpeB700