Cp4.1LG01g04050 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g04050
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG01 : 1450693 .. 1450968 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTATTATTGGGTTTGGTGTAAGGAGAGCAAAGGAATTGGGGAGGTGAAGTGGCAGAGGAGGGGAAGGCGCGGCGTCCGGCACGGCATCCGGCACGGCGGCGCTGTGCAGAGGAGGATGAGGAGGCTGCAGCGCCTGATCCCCGGCGGGCGGGGGCTGAAGGCGGACCATCTGTTGTTACAAACGGCGGACTATATAATGCAACTGAGGTCTCAAGTTGATGTTTTGCAAGCACTTACCAACATTTATGACCCTCTACTCTCTAAATATTGA

mRNA sequence

ATGGAGTATTATTGGGTTTGGTGTAAGGAGAGCAAAGGAATTGGGGAGGTGAAGTGGCAGAGGAGGGGAAGGCGCGGCGTCCGGCACGGCATCCGGCACGGCGGCGCTGTGCAGAGGAGGATGAGGAGGCTGCAGCGCCTGATCCCCGGCGGGCGGGGGCTGAAGGCGGACCATCTGTTGTTACAAACGGCGGACTATATAATGCAACTGAGGTCTCAAGTTGATGTTTTGCAAGCACTTACCAACATTTATGACCCTCTACTCTCTAAATATTGA

Coding sequence (CDS)

ATGGAGTATTATTGGGTTTGGTGTAAGGAGAGCAAAGGAATTGGGGAGGTGAAGTGGCAGAGGAGGGGAAGGCGCGGCGTCCGGCACGGCATCCGGCACGGCGGCGCTGTGCAGAGGAGGATGAGGAGGCTGCAGCGCCTGATCCCCGGCGGGCGGGGGCTGAAGGCGGACCATCTGTTGTTACAAACGGCGGACTATATAATGCAACTGAGGTCTCAAGTTGATGTTTTGCAAGCACTTACCAACATTTATGACCCTCTACTCTCTAAATATTGA

Protein sequence

MEYYWVWCKESKGIGEVKWQRRGRRGVRHGIRHGGAVQRRMRRLQRLIPGGRGLKADHLLLQTADYIMQLRSQVDVLQALTNIYDPLLSKY

Homology

[Close]

BLAST of Cp4.1LG01g04050 vs. TrEMBL
Match: A0A0A0KQB4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G602220 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.3e-24
Identity = 64/91 (70.33%), Postives = 73/91 (80.22%), Query Frame = 1


Query: 1  MEYYWVWCKESKGIGEVKWQRRGRRGVRHGIRHGGAVQRRMRRLQRLIPGGRGLKADHLL 60
          M+ Y+  C ESKGIG+V+WQRRGRRG RHG   GG+V  +MR+LQRLIPGGR LK D L 
Sbjct: 1  MDQYYDTC-ESKGIGKVRWQRRGRRGGRHGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLF 60

Query: 61 LQTADYIMQLRSQVDVLQALTNIYDPLLSKY 92
          L+TADYIMQLRSQV VLQAL+ IYDP LS Y
Sbjct: 61 LKTADYIMQLRSQVHVLQALSKIYDPTLSNY 90

[Close]

BLAST of Cp4.1LG01g04050 vs. TrEMBL
Match: A0A0D2UY55_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G343700 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.4e-10
Identity = 42/81 (51.85%), Postives = 55/81 (67.90%), Query Frame = 1


Query: 8  CKESKGIGEVKWQRRGRRGVR--HGIRHGGAVQRRMRRLQRLIPGGRGLKADHLLLQTAD 67
          CKE       KW+RR RR      G R   +V+ ++++LQRLIPG +GLK D L L+TAD
Sbjct: 9  CKE---FSRAKWRRRRRRRWTGDSGDRGSRSVRTKVKKLQRLIPGAKGLKPDRLFLRTAD 68

Query: 68 YIMQLRSQVDVLQALTNIYDP 87
          YI+QLR QV++LQAL+ IY P
Sbjct: 69 YILQLRLQVNILQALSKIYGP 86

[Close]

BLAST of Cp4.1LG01g04050 vs. TrEMBL
Match: K7L9K5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G289300 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 6.0e-09
Identity = 37/74 (50.00%), Postives = 53/74 (71.62%), Query Frame = 1


Query: 12 KGIGEVKWQRRGRRGVRHGIRHGGAVQRRMRRLQRLIPGGRGLKADHLLLQTADYIMQLR 71
          K + +VKW RR RR      R    V+RRM++LQRL+PGG G+  D L L+TA++I+QLR
Sbjct: 4  KDMAKVKWGRRRRRR-----RRQEGVERRMKKLQRLVPGGAGMNPDRLFLKTAEHILQLR 63

Query: 72 SQVDVLQALTNIYD 86
           Q++VLQAL+ I++
Sbjct: 64 LQLNVLQALSKIFN 72

[Close]

BLAST of Cp4.1LG01g04050 vs. TrEMBL
Match: A0A067GSA5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g037825mg PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 6.0e-09
Identity = 37/73 (50.68%), Postives = 52/73 (71.23%), Query Frame = 1


Query: 12 KGIGEVKWQRRGRRGVRHGIRHGGAVQRRMRRLQRLIPGGRGLKADHLLLQTADYIMQLR 71
          KG  +VKW+RR RR      R   +V+ ++ +LQ+LIPGG+GL+ D L L+TADYI+ L 
Sbjct: 7  KGFAKVKWRRRRRRSAV--ARPSASVRMKVTKLQKLIPGGQGLQPDRLFLRTADYIVHLN 66

Query: 72 SQVDVLQALTNIY 85
           Q++VLQAL+ IY
Sbjct: 67 LQLNVLQALSKIY 77

[Close]

BLAST of Cp4.1LG01g04050 vs. TrEMBL
Match: G7LFI0_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_8g063410 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.3e-08
Identity = 39/78 (50.00%), Postives = 56/78 (71.79%), Query Frame = 1


Query: 8  CKESKGIGEVKWQRRGRRGVRHGIRHGGAVQRRMRRLQRLIPGGRGLKADHLLLQTADYI 67
          CK+   + ++K +RR RR V        AV R+M++LQR+IPGG GLKAD L L+TA++I
Sbjct: 3  CKDLSKL-KMKLKRRRRREV--------AVGRKMKKLQRIIPGGDGLKADQLFLRTAEHI 62

Query: 68 MQLRSQVDVLQALTNIYD 86
          +QLR Q++ LQALT I++
Sbjct: 63 LQLRLQLNALQALTKIFN 71

[Close]

BLAST of Cp4.1LG01g04050 vs. TAIR10
Match: AT1G23965.1 (AT1G23965.1 unknown protein)

HSP 1 Score: 47.8 bits (112), Expect = 4.3e-06
Identity = 32/77 (41.56%), Postives = 50/77 (64.94%), Query Frame = 1


Query: 9   KESKGIGEVKWQRRGRRGVRHGIRHGGAVQRRMRRLQRLIPGGRGL-KADHLLLQTADYI 68
           +ES+   E + Q + + G   G    G++Q +MR+L+ LIPGGR L + D LL +TADYI
Sbjct: 41  EESRSNREQRKQTKKKTGRGSG---SGSIQIKMRKLRVLIPGGRRLNQPDLLLTKTADYI 100

Query: 69  MQLRSQVDVLQALTNIY 85
           M L  ++  L+A+++IY
Sbjct: 101 MHLELRIRFLKAISDIY 114

[Close]

BLAST of Cp4.1LG01g04050 vs. NCBI nr
Match: gi|778705118|ref|XP_011655641.1| (PREDICTED: transcription factor PAR2 [Cucumis sativus])

HSP 1 Score: 120.2 bits (300), Expect = 1.9e-24
Identity = 64/91 (70.33%), Postives = 73/91 (80.22%), Query Frame = 1


Query: 1  MEYYWVWCKESKGIGEVKWQRRGRRGVRHGIRHGGAVQRRMRRLQRLIPGGRGLKADHLL 60
          M+ Y+  C ESKGIG+V+WQRRGRRG RHG   GG+V  +MR+LQRLIPGGR LK D L 
Sbjct: 1  MDQYYDTC-ESKGIGKVRWQRRGRRGGRHGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLF 60

Query: 61 LQTADYIMQLRSQVDVLQALTNIYDPLLSKY 92
          L+TADYIMQLRSQV VLQAL+ IYDP LS Y
Sbjct: 61 LKTADYIMQLRSQVHVLQALSKIYDPTLSNY 90

[Close]

BLAST of Cp4.1LG01g04050 vs. NCBI nr
Match: gi|659090850|ref|XP_008446236.1| (PREDICTED: uncharacterized protein LOC103489026 [Cucumis melo])

HSP 1 Score: 110.9 bits (276), Expect = 1.2e-21
Identity = 63/91 (69.23%), Postives = 71/91 (78.02%), Query Frame = 1


Query: 1  MEYYWVWCKESKGIGEVKWQRRGRRGVRHGIRHGG--AVQRRMRRLQRLIPGGRGLKADH 60
          ME Y+  C ES GIG+V+WQRRGRRG RHG   GG  +V  +MR+LQRLIPGGR LK D 
Sbjct: 1  MERYYSIC-ESNGIGKVRWQRRGRRGGRHGGGGGGGGSVHMKMRKLQRLIPGGRRLKPDR 60

Query: 61 LLLQTADYIMQLRSQVDVLQALTNIYDPLLS 90
          L L+TADYIMQLRSQV VLQAL+ IYDP LS
Sbjct: 61 LFLKTADYIMQLRSQVHVLQALSKIYDPTLS 90

[Close]

BLAST of Cp4.1LG01g04050 vs. NCBI nr
Match: gi|802788017|ref|XP_012092068.1| (PREDICTED: transcription factor PAR1 [Jatropha curcas])

HSP 1 Score: 85.1 bits (209), Expect = 6.8e-14
Identity = 44/77 (57.14%), Postives = 59/77 (76.62%), Query Frame = 1


Query: 10 ESKGIGEVKWQRRGRRGVRHGIRHGGAVQRRMRRLQRLIPGGRGLKADHLLLQTADYIMQ 69
          E +   +VKW+RR RR VR      G+V+ ++++LQRLIPGG+GL+ DHL L+TADYI+Q
Sbjct: 6  ECRDFSKVKWKRRRRRAVR------GSVRSKVKKLQRLIPGGKGLQPDHLFLRTADYILQ 65

Query: 70 LRSQVDVLQALTNIYDP 87
          LR QV+VLQAL+ IY P
Sbjct: 66 LRLQVNVLQALSKIYTP 76

[Close]

BLAST of Cp4.1LG01g04050 vs. NCBI nr
Match: gi|823216320|ref|XP_012440878.1| (PREDICTED: transcription factor PAR1-like [Gossypium raimondii])

HSP 1 Score: 72.8 bits (177), Expect = 3.5e-10
Identity = 42/81 (51.85%), Postives = 55/81 (67.90%), Query Frame = 1


Query: 8  CKESKGIGEVKWQRRGRRGVR--HGIRHGGAVQRRMRRLQRLIPGGRGLKADHLLLQTAD 67
          CKE       KW+RR RR      G R   +V+ ++++LQRLIPG +GLK D L L+TAD
Sbjct: 9  CKE---FSRAKWRRRRRRRWTGDSGDRGSRSVRTKVKKLQRLIPGAKGLKPDRLFLRTAD 68

Query: 68 YIMQLRSQVDVLQALTNIYDP 87
          YI+QLR QV++LQAL+ IY P
Sbjct: 69 YILQLRLQVNILQALSKIYGP 86

[Close]

BLAST of Cp4.1LG01g04050 vs. NCBI nr
Match: gi|731374595|ref|XP_010653274.1| (PREDICTED: transcription factor PAR1 [Vitis vinifera])

HSP 1 Score: 71.6 bits (174), Expect = 7.8e-10
Identity = 43/79 (54.43%), Postives = 53/79 (67.09%), Query Frame = 1


Query: 8  CKESKGIGEVKWQRRGRRGVRHGIRHGGAVQRRMRRLQRLIPGGRGLKADHLLLQTADYI 67
          CKE  G    K +RR RR VR          R++++LQRLIPGGRGL+ D L L+TADYI
Sbjct: 6  CKEMSG---EKLRRRRRRSVR----------RKVKKLQRLIPGGRGLQPDRLFLRTADYI 65

Query: 68 MQLRSQVDVLQALTNIYDP 87
          + LR QV+VLQAL+ IY P
Sbjct: 66 LHLRFQVNVLQALSKIYKP 71

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g04050 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g04050 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQB4_CUCSA	1.3e-24	70.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G602220 PE=4 SV=1	[more]
A0A0D2UY55_GOSRA	2.4e-10	51.85	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G343700 PE=4 SV=1	[more]
K7L9K5_SOYBN	6.0e-09	50.00	Uncharacterized protein OS=Glycine max GN=GLYMA_08G289300 PE=4 SV=1	[more]
A0A067GSA5_CITSI	6.0e-09	50.68	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g037825mg PE=4 SV=1	[more]
G7LFI0_MEDTR	1.3e-08	50.00	Uncharacterized protein OS=Medicago truncatula GN=MTR_8g063410 PE=4 SV=1	[more]

BLAST of Cp4.1LG01g04050 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G23965.1	4.3e-06	41.56	unknown protein	[more]

BLAST of Cp4.1LG01g04050 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778705118\|ref\|XP_011655641.1\|	1.9e-24	70.33	PREDICTED: transcription factor PAR2 [Cucumis sativus]	[more]
gi\|659090850\|ref\|XP_008446236.1\|	1.2e-21	69.23	PREDICTED: uncharacterized protein LOC103489026 [Cucumis melo]	[more]
gi\|802788017\|ref\|XP_012092068.1\|	6.8e-14	57.14	PREDICTED: transcription factor PAR1 [Jatropha curcas]	[more]
gi\|823216320\|ref\|XP_012440878.1\|	3.5e-10	51.85	PREDICTED: transcription factor PAR1-like [Gossypium raimondii]	[more]
gi\|731374595\|ref\|XP_010653274.1\|	7.8e-10	54.43	PREDICTED: transcription factor PAR1 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity

Vocabulary: **INTERPRO**
Term	Definition
IPR011598	bHLH_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g04050.1	Cp4.1LG01g04050.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	unknown	SSF47459	HLH, helix-loop-helix DNA-binding domain	coord: 38..82 score: 7.8
None	No IPR available	PANTHER	PTHR33124	FAMILY NOT NAMED	coord: 36..85 score: 5.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g04050	Cucsa.285890	Cucumber (Gy14) v1	cgycpeB0755
Cp4.1LG01g04050	CmaCh04G002900	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g04050	CmoCh04G016540	Cucurbita moschata (Rifu)	cmocpeB676
Cp4.1LG01g04050	CmoCh04G003020	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g04050	Cla010104	Watermelon (97103) v1	cpewmB434
Cp4.1LG01g04050	Csa5G602220	Cucumber (Chinese Long) v2	cpecuB419
Cp4.1LG01g04050	MELO3C012013	Melon (DHL92) v3.5.1	cpemeB380
Cp4.1LG01g04050	ClCG05G025160	Watermelon (Charleston Gray)	cpewcgB395
Cp4.1LG01g04050	CSPI05G22850	Wild cucumber (PI 183967)	cpecpiB419
Cp4.1LG01g04050	Lsi04G005260	Bottle gourd (USVL1VR-Ls)	cpelsiB363
Cp4.1LG01g04050	MELO3C012013.2	Melon (DHL92) v3.6.1	cpemedB439
Cp4.1LG01g04050	CsaV3_5G031740	Cucumber (Chinese Long) v3	cpecucB0521
Cp4.1LG01g04050	Bhi07G001359	Wax gourd	cpewgoB0561
Cp4.1LG01g04050	Carg01771	Silver-seed gourd	carcpeB1178
Cp4.1LG01g04050	Carg25691	Silver-seed gourd	carcpeB1186

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG01g04050	Cp4.1LG01g13210	Cucurbita pepo (Zucchini)	cpecpeB375

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g04050	Cucumber (Chinese Long) v3	cpecucB0550
Cp4.1LG01g04050	Cucurbita maxima (Rimu)	cmacpeB724
Cp4.1LG01g04050	Wild cucumber (PI 183967)	cpecpiB445
Cp4.1LG01g04050	Cucumber (Chinese Long) v2	cpecuB444
Cp4.1LG01g04050	Watermelon (97103) v1	cpewmB379
Cp4.1LG01g04050	Cucumber (Gy14) v2	cgybcpeB631