CmoCh04G003020 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G003020
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr04 : 1503214 .. 1505600 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCTCCCAACAACTTCTTCCACAGGAACATGGGGCCCACGTTGAATTTTCGCCTGGATCCATAAATAAGCAATTAATGGAGAAATGAATACGATGTGGAATGTGGAGCGTTGGATTCAGGTGATCGTATCCGGACACGTGTGGGAATCCAGAGATTCGGGGACTACGAGGACAGAAGGAAAACAGAGCAAGAAGTGGCTGGCGTTGGCGTGGGCACCCGAACCTAGCTGTCAGACACGTGTGTGGGTCGTCAAAGCCAACCGTCCTTGGCCCCACCCATTCTTACATAACGACAAAATAACTCAGCCTCCTTTTATTATTATTATATTATTATTATATTATTATTAATTCACTATATATATATATATACACACACAAATTCAGATTCATATTCCAAAAAAATGGAGTATTGTTGGGTTTGGTGTAAGGAGAGCAAAGGAATTGGGAAGGTGAAGTGGCAGAGGAGGGGAAGGCGCGGCGTCCGGCACGGCATCCGGCACGGCGGCGCTGTGCAGAGGAGGATGAGGAGGCTGCAGCGCTTGATCCCCGGCGGGCGGGGGCTGAAGGCGGACCGTCTGTTGTTACAAACGGCGGACTATATAATGCAACTGAGGTCTCAAGTTGATGTTTTGCAAGCACTTACCAACATTTATGACCCTCTACTTTCTAAATATTGATTTTTTTTTTTTAAAGAAAAAAAAAAATTAATTGGCTGTTTTGCCATGACATACATACATACATATGGGATGATGTATGTATGTATGTATGTATGTGTAGATATTCCATGACACTATATATATCTACTACCAATGCCTTCTTCCCCAAGTAGCTGATCAATTTTAAATTTTCTATTTTATTTTATATTTCGTAGCAACATAATTTTCGTGAATAACTAGTTGAGTTGTGCTAATTGAAGATAGTTGAAATGGTTACGGAATTATCGTGTAGAATTTTGTTCATTTCTTCGAAGTTAAAAATAATTAATTGGACTGTGATCGACTTCTAGCTTAAATTTATTTAAAATTTAGTAATTGGTAAGCTTCAATTTCACGTCGATTGGTAAGAATGAAAAATAAATTCTCGATGATCTATGACCACTTTCATCTCTAAGTTTGTTTGTTTTTTTCATTGACACCGTTAAAGCTTGAATTGTTTGTTTTTTTCATTGACGGTTAAAGCTTGAATTTGAAGTTTATTTTGTAAGTCGGTGTTTGTTTTAAATTTATGGGTTTTCTATAAAATTATTCAATACAATGACGCTATTGAACGAATTAGGTTTTAATATAGTATAAAAATGTTAAAATATCACCTACGGATTTGTGTTTTACTTCACTAAATTACCATGAATACATTTCAATCATAATAACTCCAAAATTAGATAGGTTTGGTTTGAAACATTCTATATTGAGTGACCTTCTAGGAATATTCTAGTAAGCACGTGAGTGAAAATAAAACATTCTAAAAAAACGTGTTATTTTGTGGAGATAATCTTTACTTTTCGAAACGCTTTAAGACTATTAGGTTACGTGATCATGCACGGGATGTAGGAAATGTTAAAGATATCAGGTGTTGAACCATAGTTCTAATGGTGTTATATCTCATTCGCTAATCCATTCTCTAGAAATTTCTTTTCTCGAGTCGAGCTACTCTTAGATTAGATCAGTAACTTATATCCCGAGAAGAATTGCCTCAACTAGCCTATTAATTTTTTGAAAAATATTTACAAATCCAAATTAAAATGTTAGGTGTATTATCAAATATTAAATTCAAATAATTTGACCCAAAAAAAGGGAAAAAAAAAGTTCAAAATCGTTCACAACCGACCTTGTTTGGACCGATTTAATTATATTCCCAGTCTCGCCCAATTCCTATTCCAAACGGGAGAAGAATCCAATCTTAAACCACGTCGGTGGATACCCAATGCAATGTCCCAAACGGGCGACTAAACACCGACCCATCGTTCCTCCTCGTAGCTGCTAACATTTTTCACATCTGGGGCTGGGGGCCTGAAGCAAAGCACTTGATTTCAGAGCCAAATTGGGCCGTTCATCGAGGTTAAACCAATTCAAGGGCTTCAATCAGCAATCAGCTTCTCTTTCCTCAATGACCCATTTCTTCCCTCTTCACTTTTCCAGTTCCCATGTCGTTGTTCGAATGTTTTGGCCTTGAGCCACCACAAAATCGCTTACGACACCATCCATTTCAAGTATATCAGCATCAGCATTTAAAACCCTCGAAGGTTGGGGTCCTCTTGAACTGAAGCATCCTCTTCTGTGTCGAAACTCTCAGAATCGTATGGCAAATGCAGTGCCAGATTCATTTCTAGTCGATTTCCCGATGACCCAGGTAGGTAAATTGCAATCAAAACCTTGTGAGAGCTCTTAA

mRNA sequence

ATGTGCTCCCAACAACTTCTTCCACAGGAACATGGGGCCCACGTGATCGTATCCGGACACGTGTGGGAATCCAGAGATTCGGGGACTACGAGGACAGAAGGAAAACAGAGCAAGAAGTGGCTGGCGTTGGCGTGGGCACCCGAACCTAGCTGAGAGCAAAGGAATTGGGAAGGTGAAGTGGCAGAGGAGGGGAAGGCGCGGCGTCCGGCACGGCATCCGGCACGGCGGCGCTGTGCAGAGGAGGATGAGGAGGCTGCAGCGCTTGATCCCCGGCGGGCGGGGGCTGAAGGCGGACCGTCTGTTGTTACAAACGGCGGACTATATAATGCAACTGAGGTCTCAATTCCCATGTCGTTGTTCGAATGTTTTGGCCTTGAGCCACCACAAAATCGCTTACGACACCATCCATTTCAAAATCGTATGGCAAATGCAGTGCCAGATTCATTTCTAGTCGATTTCCCGATGACCCAGGTAGGTAAATTGCAATCAAAACCTTGTGAGAGCTCTTAA

Coding sequence (CDS)

ATGAGGAGGCTGCAGCGCTTGATCCCCGGCGGGCGGGGGCTGAAGGCGGACCGTCTGTTGTTACAAACGGCGGACTATATAATGCAACTGAGGTCTCAATTCCCATGTCGTTGTTCGAATGTTTTGGCCTTGAGCCACCACAAAATCGCTTACGACACCATCCATTTCAAAATCGTATGGCAAATGCAGTGCCAGATTCATTTCTAG
Homology
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BLAST of CmoCh04G003020 vs. TrEMBL
Match: A0A0A0KQB4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G602220 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 8.0e-06
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 1 

Query: 1  MRRLQRLIPGGRGLKADRLLLQTADYIMQLRSQ 34
          MR+LQRLIPGGR LK DRL L+TADYIMQLRSQ
Sbjct: 40 MRKLQRLIPGGRRLKPDRLFLKTADYIMQLRSQ 72

The following BLAST results are available for this feature:
BLAST of CmoCh04G003020 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G003020 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQB4_CUCSA8.0e-0684.85Uncharacterized protein OS=Cucumis sativus GN=Csa_5G602220 PE=4 SV=1[more]
BLAST of CmoCh04G003020 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh04G003020 vs. NCBI nr
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G003020.1CmoCh04G003020.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G003020Cp4.1LG01g04050Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G003020CsaV3_5G031740Cucumber (Chinese Long) v3cmocucB0851
CmoCh04G003020Bhi07G001359Wax gourdcmowgoB0895
CmoCh04G003020Carg01771Silver-seed gourdcarcmoB1140
CmoCh04G003020Carg25691Silver-seed gourdcarcmoB1148
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G003020Wild cucumber (PI 183967)cmocpiB726
CmoCh04G003020Cucumber (Chinese Long) v2cmocuB718
CmoCh04G003020Melon (DHL92) v3.5.1cmomeB647
CmoCh04G003020Watermelon (Charleston Gray)cmowcgB661
CmoCh04G003020Watermelon (97103) v1cmowmB700
CmoCh04G003020Bottle gourd (USVL1VR-Ls)cmolsiB674
CmoCh04G003020Cucumber (Gy14) v2cgybcmoB630
CmoCh04G003020Melon (DHL92) v3.6.1cmomedB737
CmoCh04G003020Watermelon (97103) v2cmowmbB736
CmoCh04G003020Cucurbita moschata (Rifu)cmocmoB465
CmoCh04G003020Cucumber (Gy14) v1cgycmoB0798
CmoCh04G003020Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G003020Cucurbita maxima (Rimu)cmacmoB732