CmoCh04G016540 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G016540
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	phy rapidly regulated 1
Location	Cmo_Chr04 : 8428105 .. 8428365 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATATTACAATTGTGATGAGACCAGAGGGATTGCGAAGGTGAAGTGGCAGAGGAGAGGGAGGCGCGGCGGACGGCACGGCGGCGCCTCCGTTCACATGAAGTTGAGAAAGCTGCAGCGAATCATCCCCGGAGGACGGAGGCTGAAACCGGACCGGCTATTCTTAAAAACGGCGGATTATATTATGCAATTGAGGTCTCAAGTTCATGTTTTGAACGCGCTTTCCAAGATCTACGACCCCCAACTTTCTCGATATTGA

mRNA sequence

ATGGAATATTACAATTGTGATGAGACCAGAGGGATTGCGAAGGTGAAGTGGCAGAGGAGAGGGAGGCGCGGCGGACGGCACGGCGGCGCCTCCGTTCACATGAAGTTGAGAAAGCTGCAGCGAATCATCCCCGGAGGACGGAGGCTGAAACCGGACCGGCTATTCTTAAAAACGGCGGATTATATTATGCAATTGAGGTCTCAAGTTCATGTTTTGAACGCGCTTTCCAAGATCTACGACCCCCAACTTTCTCGATATTGA

Coding sequence (CDS)

ATGGAATATTACAATTGTGATGAGACCAGAGGGATTGCGAAGGTGAAGTGGCAGAGGAGAGGGAGGCGCGGCGGACGGCACGGCGGCGCCTCCGTTCACATGAAGTTGAGAAAGCTGCAGCGAATCATCCCCGGAGGACGGAGGCTGAAACCGGACCGGCTATTCTTAAAAACGGCGGATTATATTATGCAATTGAGGTCTCAAGTTCATGTTTTGAACGCGCTTTCCAAGATCTACGACCCCCAACTTTCTCGATATTGA

Homology

[Close]

BLAST of CmoCh04G016540 vs. TrEMBL
Match: A0A0A0KQB4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G602220 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 4.8e-32
Identity = 71/88 (80.68%), Postives = 78/88 (88.64%), Query Frame = 1


Query: 2  EYYNCDETRGIAKVKWQRRGRRGGRHGGA---SVHMKLRKLQRIIPGGRRLKPDRLFLKT 61
          +YY+  E++GI KV+WQRRGRRGGRHGG    SVHMK+RKLQR+IPGGRRLKPDRLFLKT
Sbjct: 3  QYYDTCESKGIGKVRWQRRGRRGGRHGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLFLKT 62

Query: 62 ADYIMQLRSQVHVLNALSKIYDPQLSRY 87
          ADYIMQLRSQVHVL ALSKIYDP LS Y
Sbjct: 63 ADYIMQLRSQVHVLQALSKIYDPTLSNY 90

[Close]

BLAST of CmoCh04G016540 vs. TrEMBL
Match: A0A0D2UY55_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G343700 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.8e-15
Identity = 48/86 (55.81%), Postives = 59/86 (68.60%), Query Frame = 1


Query: 1  MEYYNCDETRGIAKVKWQRRGRR-----GGRHGGASVHMKLRKLQRIIPGGRRLKPDRLF 60
          ME   C E    ++ KW+RR RR      G  G  SV  K++KLQR+IPG + LKPDRLF
Sbjct: 4  MELRRCKE---FSRAKWRRRRRRRWTGDSGDRGSRSVRTKVKKLQRLIPGAKGLKPDRLF 63

Query: 61 LKTADYIMQLRSQVHVLNALSKIYDP 82
          L+TADYI+QLR QV++L ALSKIY P
Sbjct: 64 LRTADYILQLRLQVNILQALSKIYGP 86

[Close]

BLAST of CmoCh04G016540 vs. TrEMBL
Match: A0A0D2SJD6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G184100 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.6e-14
Identity = 42/74 (56.76%), Postives = 57/74 (77.03%), Query Frame = 1


Query: 15 VKWQRRGRR-----GGRHGGASVHMKLRKLQRIIPGGRRLKPDRLFLKTADYIMQLRSQV 74
          VKW+ R RR     GG  GG SV MK+++LQ++IPGG+ ++PDRLFL+TADYI+ LR Q+
Sbjct: 14 VKWRMRRRRTACSGGGSTGGRSVRMKIKRLQKLIPGGKLMQPDRLFLRTADYILHLRLQL 73

Query: 75 HVLNALSKIYDPQL 84
          ++L ALSKIY P +
Sbjct: 74 NLLQALSKIYQPSI 87

[Close]

BLAST of CmoCh04G016540 vs. TrEMBL
Match: A0A067GSA5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g037825mg PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.0e-13
Identity = 44/71 (61.97%), Postives = 55/71 (77.46%), Query Frame = 1


Query: 10 RGIAKVKWQRRGRRGG-RHGGASVHMKLRKLQRIIPGGRRLKPDRLFLKTADYIMQLRSQ 69
          +G AKVKW+RR RR       ASV MK+ KLQ++IPGG+ L+PDRLFL+TADYI+ L  Q
Sbjct: 7  KGFAKVKWRRRRRRSAVARPSASVRMKVTKLQKLIPGGQGLQPDRLFLRTADYIVHLNLQ 66

Query: 70 VHVLNALSKIY 80
          ++VL ALSKIY
Sbjct: 67 LNVLQALSKIY 77

[Close]

BLAST of CmoCh04G016540 vs. TrEMBL
Match: B9S4M3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0993530 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 7.2e-12
Identity = 43/80 (53.75%), Postives = 56/80 (70.00%), Query Frame = 1


Query: 10 RGIAKVKWQR-----RGRRGGRHGGA-----SVHMKLRKLQRIIPGGRRLKPDRLFLKTA 69
          R ++KV W+R     R RR  R G A     S+ M+++KLQR+IPGG  L+PDRLFL+TA
Sbjct: 7  RDVSKVNWRRTTMGRRRRRRRRRGAATATTTSIQMRVKKLQRLIPGGEELQPDRLFLRTA 66

Query: 70 DYIMQLRSQVHVLNALSKIY 80
          DYI+ L  QV+VL ALS+IY
Sbjct: 67 DYILHLELQVNVLQALSEIY 86

[Close]

BLAST of CmoCh04G016540 vs. TAIR10
Match: AT1G23965.1 (AT1G23965.1 unknown protein)

HSP 1 Score: 60.8 bits (146), Expect = 4.6e-10
Identity = 33/74 (44.59%), Postives = 48/74 (64.86%), Query Frame = 1


Query: 7   DETRGIAKVKWQRRGRRGGRHGGASVHMKLRKLQRIIPGGRRL-KPDRLFLKTADYIMQL 66
           +E+R   + + Q + + G   G  S+ +K+RKL+ +IPGGRRL +PD L  KTADYIM L
Sbjct: 41  EESRSNREQRKQTKKKTGRGSGSGSIQIKMRKLRVLIPGGRRLNQPDLLLTKTADYIMHL 100

Query: 67  RSQVHVLNALSKIY 80
             ++  L A+S IY
Sbjct: 101 ELRIRFLKAISDIY 114

[Close]

BLAST of CmoCh04G016540 vs. NCBI nr
Match: gi|778705118|ref|XP_011655641.1| (PREDICTED: transcription factor PAR2 [Cucumis sativus])

HSP 1 Score: 144.8 bits (364), Expect = 6.9e-32
Identity = 71/88 (80.68%), Postives = 78/88 (88.64%), Query Frame = 1


Query: 2  EYYNCDETRGIAKVKWQRRGRRGGRHGGA---SVHMKLRKLQRIIPGGRRLKPDRLFLKT 61
          +YY+  E++GI KV+WQRRGRRGGRHGG    SVHMK+RKLQR+IPGGRRLKPDRLFLKT
Sbjct: 3  QYYDTCESKGIGKVRWQRRGRRGGRHGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLFLKT 62

Query: 62 ADYIMQLRSQVHVLNALSKIYDPQLSRY 87
          ADYIMQLRSQVHVL ALSKIYDP LS Y
Sbjct: 63 ADYIMQLRSQVHVLQALSKIYDPTLSNY 90

[Close]

BLAST of CmoCh04G016540 vs. NCBI nr
Match: gi|659090850|ref|XP_008446236.1| (PREDICTED: uncharacterized protein LOC103489026 [Cucumis melo])

HSP 1 Score: 139.8 bits (351), Expect = 2.2e-30
Identity = 70/87 (80.46%), Postives = 75/87 (86.21%), Query Frame = 1


Query: 3  YYNCDETRGIAKVKWQRRGRRGGRHGGA-----SVHMKLRKLQRIIPGGRRLKPDRLFLK 62
          YY+  E+ GI KV+WQRRGRRGGRHGG      SVHMK+RKLQR+IPGGRRLKPDRLFLK
Sbjct: 4  YYSICESNGIGKVRWQRRGRRGGRHGGGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLFLK 63

Query: 63 TADYIMQLRSQVHVLNALSKIYDPQLS 85
          TADYIMQLRSQVHVL ALSKIYDP LS
Sbjct: 64 TADYIMQLRSQVHVLQALSKIYDPTLS 90

[Close]

BLAST of CmoCh04G016540 vs. NCBI nr
Match: gi|802788017|ref|XP_012092068.1| (PREDICTED: transcription factor PAR1 [Jatropha curcas])

HSP 1 Score: 92.0 bits (227), Expect = 5.3e-16
Identity = 48/77 (62.34%), Postives = 59/77 (76.62%), Query Frame = 1


Query: 5  NCDETRGIAKVKWQRRGRRGGRHGGASVHMKLRKLQRIIPGGRRLKPDRLFLKTADYIMQ 64
          N +E R  +KVKW+RR RR  R    SV  K++KLQR+IPGG+ L+PD LFL+TADYI+Q
Sbjct: 3  NNNECRDFSKVKWKRRRRRAVR---GSVRSKVKKLQRLIPGGKGLQPDHLFLRTADYILQ 62

Query: 65 LRSQVHVLNALSKIYDP 82
          LR QV+VL ALSKIY P
Sbjct: 63 LRLQVNVLQALSKIYTP 76

[Close]

BLAST of CmoCh04G016540 vs. NCBI nr
Match: gi|823216320|ref|XP_012440878.1| (PREDICTED: transcription factor PAR1-like [Gossypium raimondii])

HSP 1 Score: 89.7 bits (221), Expect = 2.6e-15
Identity = 48/86 (55.81%), Postives = 59/86 (68.60%), Query Frame = 1


Query: 1  MEYYNCDETRGIAKVKWQRRGRR-----GGRHGGASVHMKLRKLQRIIPGGRRLKPDRLF 60
          ME   C E    ++ KW+RR RR      G  G  SV  K++KLQR+IPG + LKPDRLF
Sbjct: 4  MELRRCKE---FSRAKWRRRRRRRWTGDSGDRGSRSVRTKVKKLQRLIPGAKGLKPDRLF 63

Query: 61 LKTADYIMQLRSQVHVLNALSKIYDP 82
          L+TADYI+QLR QV++L ALSKIY P
Sbjct: 64 LRTADYILQLRLQVNILQALSKIYGP 86

[Close]

BLAST of CmoCh04G016540 vs. NCBI nr
Match: gi|823159182|ref|XP_012479422.1| (PREDICTED: transcription factor PAR1-like [Gossypium raimondii])

HSP 1 Score: 85.9 bits (211), Expect = 3.8e-14
Identity = 42/74 (56.76%), Postives = 57/74 (77.03%), Query Frame = 1


Query: 15 VKWQRRGRR-----GGRHGGASVHMKLRKLQRIIPGGRRLKPDRLFLKTADYIMQLRSQV 74
          VKW+ R RR     GG  GG SV MK+++LQ++IPGG+ ++PDRLFL+TADYI+ LR Q+
Sbjct: 13 VKWRMRRRRTACSGGGSTGGRSVRMKIKRLQKLIPGGKLMQPDRLFLRTADYILHLRLQL 72

Query: 75 HVLNALSKIYDPQL 84
          ++L ALSKIY P +
Sbjct: 73 NLLQALSKIYQPSI 86

The following BLAST results are available for this feature:

BLAST of CmoCh04G016540 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G016540 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQB4_CUCSA	4.8e-32	80.68	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G602220 PE=4 SV=1	[more]
A0A0D2UY55_GOSRA	1.8e-15	55.81	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G343700 PE=4 SV=1	[more]
A0A0D2SJD6_GOSRA	2.6e-14	56.76	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G184100 PE=4 SV=1	[more]
A0A067GSA5_CITSI	1.0e-13	61.97	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g037825mg PE=4 SV=1	[more]
B9S4M3_RICCO	7.2e-12	53.75	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0993530 PE=4 SV=1	[more]

BLAST of CmoCh04G016540 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G23965.1	4.6e-10	44.59	unknown protein	[more]

BLAST of CmoCh04G016540 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778705118\|ref\|XP_011655641.1\|	6.9e-32	80.68	PREDICTED: transcription factor PAR2 [Cucumis sativus]	[more]
gi\|659090850\|ref\|XP_008446236.1\|	2.2e-30	80.46	PREDICTED: uncharacterized protein LOC103489026 [Cucumis melo]	[more]
gi\|802788017\|ref\|XP_012092068.1\|	5.3e-16	62.34	PREDICTED: transcription factor PAR1 [Jatropha curcas]	[more]
gi\|823216320\|ref\|XP_012440878.1\|	2.6e-15	55.81	PREDICTED: transcription factor PAR1-like [Gossypium raimondii]	[more]
gi\|823159182\|ref\|XP_012479422.1\|	3.8e-14	56.76	PREDICTED: transcription factor PAR1-like [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0046983	protein dimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G016540.1	CmoCh04G016540.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33124	FAMILY NOT NAMED	coord: 32..80 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G016540	Cucsa.285890	Cucumber (Gy14) v1	cgycmoB0797
CmoCh04G016540	CmaCh04G015820	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G016540	Cla010104	Watermelon (97103) v1	cmowmB698
CmoCh04G016540	Csa5G602220	Cucumber (Chinese Long) v2	cmocuB715
CmoCh04G016540	MELO3C012013	Melon (DHL92) v3.5.1	cmomeB645
CmoCh04G016540	ClCG05G025160	Watermelon (Charleston Gray)	cmowcgB659
CmoCh04G016540	CSPI05G22850	Wild cucumber (PI 183967)	cmocpiB723
CmoCh04G016540	Lsi04G005260	Bottle gourd (USVL1VR-Ls)	cmolsiB671
CmoCh04G016540	Cp4.1LG01g13210	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G016540	Cp4.1LG01g04050	Cucurbita pepo (Zucchini)	cmocpeB676
CmoCh04G016540	MELO3C012013.2	Melon (DHL92) v3.6.1	cmomedB735
CmoCh04G016540	CsaV3_5G031740	Cucumber (Chinese Long) v3	cmocucB0847
CmoCh04G016540	Cla97C05G107280	Watermelon (97103) v2	cmowmbB734
CmoCh04G016540	Bhi07G001359	Wax gourd	cmowgoB0896
CmoCh04G016540	Carg01771	Silver-seed gourd	carcmoB1138

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G016540	Cucurbita moschata (Rifu)	cmocmoB465