CmaCh04G015820 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G015820
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr04 : 8012062 .. 8013078 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATATTACAATTGTGATGAGGCCAAAGGGATTGCGAAGGTGAAGTGGCAGAGGAGAGGGAGGCGCGGCGGACTGCACGGCGGCAGCTCCTCCGTGCACATGAAGATGAGAAAGCTGCAGCGGCTCATCCCCGGAGGGCGGAGGTTGAAACCGGACCGGCTATTCTTAAAAACGGCGGATTATATTATGCAATTGAGGTCTCAAGTTCATGTTTTGCAAGCGCTTTCCAAGATCTACGACCCCCGACTTTCTCAATATTGATCTCTCTCTCTCTCTCTTCTTTTTTTCTCTCTCCCCTTTTTACTCTTTTTTTTTCTCAAAATGGAAAAGATTATCACCTGGTACGATATTATCTATTTTGACTATTACCTCTCGATTTTAAGAGAAGTTTGTACTTTTCAAGATATCTCATACAAAATGAAGATAGTATTTCTTGATTATAAAATCTGATCATTCTCTAAATTAACCAATATGAAAGATGGAAGATGGAAGATGGAAGATGTAGGTTTGATGTTAGTATGTATTAATTATGTGTAGATATCACATCGACAAAATATCTACTGCCATTGTCTTCTCGAGTAGCTTATTAAGATTAATTCAAGGCTTCTTCTTCTCTTGCTTTTTTCATTTTGAACGTTGAACTGAGTGAATATGAATACAATCTAATTTTAAACCACGTCGGTGGATATTAACCAAAGCCCAAACAGTTGATTAAACACCGACCCATGTTGACACCTGGGGGTGGGGGCCTGAAGCGAAGTATTTGGGCCTGAAGCCGACATCAACGGATTTTGTGAAGCTTCTATAATCAATCGGATTCTGTTTCCCGAATCACCCATTTCCCCCCTCGAATGCTATGGCCTTGTGCCACCGCCGTCGCTTACGATACCATCCTCTGCCTTTCCAAATGTATCGGCATTTAAAACCCTCGATGAGGTTGGGTCTCTGCGGCTGAGGGGTTCTGTCGGAACTCTCGGAATCATGTGGCACATGCATTTCCAGCTCCATTTCTAG

mRNA sequence

ATGGAATATTACAATTGTGATGAGGCCAAAGGGATTGCGAAGGTGAAGTGGCAGAGGAGAGGGAGGCGCGGCGGACTGCACGGCGGCAGCTCCTCCGTGCACATGAAGATGAGAAAGCTGCAGCGGCTCATCCCCGGAGGGCGGAGGTTGAAACCGGACCGGCTATTCTTAAAAACGGCGGATTATATTATGCAATTGAGCGAAGTATTTGGGCCTGAAGCCGACATCAACGGATTTTGTGAAGCTTCTATAATCAATCGGATTCTGTTTCCCGAATCACCCATTTCCCCCCTCGAATGCTATGGCCTTGTGCCACCGCCGTCGCTTACGATACCATCCTCTGCCTTTCCAAATGTATCGGCATTTAAAACCCTCGATGAGGTTGGGTCTCTGCGGCTGAGGGGTTCTGTCGGAACTCTCGGAATCATGTGGCACATGCATTTCCAGCTCCATTTCTAG

Coding sequence (CDS)

ATGGAATATTACAATTGTGATGAGGCCAAAGGGATTGCGAAGGTGAAGTGGCAGAGGAGAGGGAGGCGCGGCGGACTGCACGGCGGCAGCTCCTCCGTGCACATGAAGATGAGAAAGCTGCAGCGGCTCATCCCCGGAGGGCGGAGGTTGAAACCGGACCGGCTATTCTTAAAAACGGCGGATTATATTATGCAATTGAGCGAAGTATTTGGGCCTGAAGCCGACATCAACGGATTTTGTGAAGCTTCTATAATCAATCGGATTCTGTTTCCCGAATCACCCATTTCCCCCCTCGAATGCTATGGCCTTGTGCCACCGCCGTCGCTTACGATACCATCCTCTGCCTTTCCAAATGTATCGGCATTTAAAACCCTCGATGAGGTTGGGTCTCTGCGGCTGAGGGGTTCTGTCGGAACTCTCGGAATCATGTGGCACATGCATTTCCAGCTCCATTTCTAG

Protein sequence

MEYYNCDEAKGIAKVKWQRRGRRGGLHGGSSSVHMKMRKLQRLIPGGRRLKPDRLFLKTADYIMQLSEVFGPEADINGFCEASIINRILFPESPISPLECYGLVPPPSLTIPSSAFPNVSAFKTLDEVGSLRLRGSVGTLGIMWHMHFQLHF

Homology

[Close]

BLAST of CmaCh04G015820 vs. TrEMBL
Match: A0A0A0KQB4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G602220 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.6e-22
Identity = 55/67 (82.09%), Postives = 59/67 (88.06%), Query Frame = 1


Query: 2  EYYNCDEAKGIAKVKWQRRGRRGGLHGGSS--SVHMKMRKLQRLIPGGRRLKPDRLFLKT 61
          +YY+  E+KGI KV+WQRRGRRGG HGG    SVHMKMRKLQRLIPGGRRLKPDRLFLKT
Sbjct: 3  QYYDTCESKGIGKVRWQRRGRRGGRHGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLFLKT 62

Query: 62 ADYIMQL 67
          ADYIMQL
Sbjct: 63 ADYIMQL 69

[Close]

BLAST of CmaCh04G015820 vs. TrEMBL
Match: A0A067GSA5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g037825mg PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.8e-11
Identity = 37/58 (63.79%), Postives = 47/58 (81.03%), Query Frame = 1


Query: 10 KGIAKVKWQRRGRRGGLHGGSSSVHMKMRKLQRLIPGGRRLKPDRLFLKTADYIMQLS 68
          KG AKVKW+RR RR  +   S+SV MK+ KLQ+LIPGG+ L+PDRLFL+TADYI+ L+
Sbjct: 7  KGFAKVKWRRRRRRSAVARPSASVRMKVTKLQKLIPGGQGLQPDRLFLRTADYIVHLN 64

[Close]

BLAST of CmaCh04G015820 vs. TrEMBL
Match: W9RNH5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_027812 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.0e-09
Identity = 38/86 (44.19%), Postives = 50/86 (58.14%), Query Frame = 1


Query: 2  EYYNCDEAKGIAKVKWQRRGRRGGLHGGSSSVHMKMRKLQRLIPGGRRLKPDRLFLKTAD 61
          +YY C   KG A  +W+RR RR     G  SV  K+++LQ LIPGGR LKPD LFL+TAD
Sbjct: 8  QYYYCH--KGSAVARWRRRRRRSAARRG--SVKSKVKRLQMLIPGGRGLKPDHLFLRTAD 67

Query: 62 YIMQLSEVFGPEADINGFCEASIINR 88
          YI+ L     P ++     +    N+
Sbjct: 68 YILHLRLQVTPNSESESVAKLGATNK 89

[Close]

BLAST of CmaCh04G015820 vs. TrEMBL
Match: A0A0D2UY55_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G343700 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.7e-09
Identity = 43/86 (50.00%), Postives = 54/86 (62.79%), Query Frame = 1


Query: 1  MEYYNCDEAKGIAKVKWQRRGRRG--GLHG--GSSSVHMKMRKLQRLIPGGRRLKPDRLF 60
          ME   C E    ++ KW+RR RR   G  G  GS SV  K++KLQRLIPG + LKPDRLF
Sbjct: 4  MELRRCKE---FSRAKWRRRRRRRWTGDSGDRGSRSVRTKVKKLQRLIPGAKGLKPDRLF 63

Query: 61 LKTADYIMQ----------LSEVFGP 73
          L+TADYI+Q          LS+++GP
Sbjct: 64 LRTADYILQLRLQVNILQALSKIYGP 86

[Close]

BLAST of CmaCh04G015820 vs. TrEMBL
Match: A0A0D2SJD6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G184100 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.8e-08
Identity = 33/61 (54.10%), Postives = 44/61 (72.13%), Query Frame = 1


Query: 10 KGIAKVKWQRRGRRGGLHGGSS----SVHMKMRKLQRLIPGGRRLKPDRLFLKTADYIMQ 67
          K  + VKW+ R RR    GG S    SV MK+++LQ+LIPGG+ ++PDRLFL+TADYI+ 
Sbjct: 9  KEFSMVKWRMRRRRTACSGGGSTGGRSVRMKIKRLQKLIPGGKLMQPDRLFLRTADYILH 68

[Close]

BLAST of CmaCh04G015820 vs. TAIR10
Match: AT1G23965.1 (AT1G23965.1 unknown protein)

HSP 1 Score: 53.5 bits (127), Expect = 1.3e-07
Identity = 28/46 (60.87%), Postives = 34/46 (73.91%), Query Frame = 1


Query: 22  RRGGLHGGSSSVHMKMRKLQRLIPGGRRL-KPDRLFLKTADYIMQL 67
           ++ G   GS S+ +KMRKL+ LIPGGRRL +PD L  KTADYIM L
Sbjct: 55  KKTGRGSGSGSIQIKMRKLRVLIPGGRRLNQPDLLLTKTADYIMHL 100

[Close]

BLAST of CmaCh04G015820 vs. NCBI nr
Match: gi|778705118|ref|XP_011655641.1| (PREDICTED: transcription factor PAR2 [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 5.1e-22
Identity = 55/67 (82.09%), Postives = 59/67 (88.06%), Query Frame = 1


Query: 2  EYYNCDEAKGIAKVKWQRRGRRGGLHGGSS--SVHMKMRKLQRLIPGGRRLKPDRLFLKT 61
          +YY+  E+KGI KV+WQRRGRRGG HGG    SVHMKMRKLQRLIPGGRRLKPDRLFLKT
Sbjct: 3  QYYDTCESKGIGKVRWQRRGRRGGRHGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLFLKT 62

Query: 62 ADYIMQL 67
          ADYIMQL
Sbjct: 63 ADYIMQL 69

[Close]

BLAST of CmaCh04G015820 vs. NCBI nr
Match: gi|659090850|ref|XP_008446236.1| (PREDICTED: uncharacterized protein LOC103489026 [Cucumis melo])

HSP 1 Score: 109.4 bits (272), Expect = 5.7e-21
Identity = 54/68 (79.41%), Postives = 57/68 (83.82%), Query Frame = 1


Query: 3  YYNCDEAKGIAKVKWQRRGRRGGLHGGSS----SVHMKMRKLQRLIPGGRRLKPDRLFLK 62
          YY+  E+ GI KV+WQRRGRRGG HGG      SVHMKMRKLQRLIPGGRRLKPDRLFLK
Sbjct: 4  YYSICESNGIGKVRWQRRGRRGGRHGGGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLFLK 63

Query: 63 TADYIMQL 67
          TADYIMQL
Sbjct: 64 TADYIMQL 71

[Close]

BLAST of CmaCh04G015820 vs. NCBI nr
Match: gi|985456464|ref|XP_015387400.1| (PREDICTED: transcription factor IBH1-like [Citrus sinensis])

HSP 1 Score: 76.6 bits (187), Expect = 4.1e-11
Identity = 37/58 (63.79%), Postives = 47/58 (81.03%), Query Frame = 1


Query: 10 KGIAKVKWQRRGRRGGLHGGSSSVHMKMRKLQRLIPGGRRLKPDRLFLKTADYIMQLS 68
          KG AKVKW+RR RR  +   S+SV MK+ KLQ+LIPGG+ L+PDRLFL+TADYI+ L+
Sbjct: 9  KGFAKVKWRRRRRRSAVARPSASVRMKVTKLQKLIPGGQGLQPDRLFLRTADYIVHLN 66

[Close]

BLAST of CmaCh04G015820 vs. NCBI nr
Match: gi|641863843|gb|KDO82529.1| (hypothetical protein CISIN_1g037825mg [Citrus sinensis])

HSP 1 Score: 76.6 bits (187), Expect = 4.1e-11
Identity = 37/58 (63.79%), Postives = 47/58 (81.03%), Query Frame = 1


Query: 10 KGIAKVKWQRRGRRGGLHGGSSSVHMKMRKLQRLIPGGRRLKPDRLFLKTADYIMQLS 68
          KG AKVKW+RR RR  +   S+SV MK+ KLQ+LIPGG+ L+PDRLFL+TADYI+ L+
Sbjct: 7  KGFAKVKWRRRRRRSAVARPSASVRMKVTKLQKLIPGGQGLQPDRLFLRTADYIVHLN 64

[Close]

BLAST of CmaCh04G015820 vs. NCBI nr
Match: gi|703113881|ref|XP_010100497.1| (hypothetical protein L484_027812 [Morus notabilis])

HSP 1 Score: 70.5 bits (171), Expect = 2.9e-09
Identity = 38/86 (44.19%), Postives = 50/86 (58.14%), Query Frame = 1


Query: 2  EYYNCDEAKGIAKVKWQRRGRRGGLHGGSSSVHMKMRKLQRLIPGGRRLKPDRLFLKTAD 61
          +YY C   KG A  +W+RR RR     G  SV  K+++LQ LIPGGR LKPD LFL+TAD
Sbjct: 8  QYYYCH--KGSAVARWRRRRRRSAARRG--SVKSKVKRLQMLIPGGRGLKPDHLFLRTAD 67

Query: 62 YIMQLSEVFGPEADINGFCEASIINR 88
          YI+ L     P ++     +    N+
Sbjct: 68 YILHLRLQVTPNSESESVAKLGATNK 89

The following BLAST results are available for this feature:

BLAST of CmaCh04G015820 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh04G015820 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQB4_CUCSA	3.6e-22	82.09	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G602220 PE=4 SV=1	[more]
A0A067GSA5_CITSI	2.8e-11	63.79	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g037825mg PE=4 SV=1	[more]
W9RNH5_9ROSA	2.0e-09	44.19	Uncharacterized protein OS=Morus notabilis GN=L484_027812 PE=4 SV=1	[more]
A0A0D2UY55_GOSRA	2.7e-09	50.00	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G343700 PE=4 SV=1	[more]
A0A0D2SJD6_GOSRA	3.8e-08	54.10	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G184100 PE=4 SV=1	[more]

BLAST of CmaCh04G015820 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G23965.1	1.3e-07	60.87	unknown protein	[more]

BLAST of CmaCh04G015820 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778705118\|ref\|XP_011655641.1\|	5.1e-22	82.09	PREDICTED: transcription factor PAR2 [Cucumis sativus]	[more]
gi\|659090850\|ref\|XP_008446236.1\|	5.7e-21	79.41	PREDICTED: uncharacterized protein LOC103489026 [Cucumis melo]	[more]
gi\|985456464\|ref\|XP_015387400.1\|	4.1e-11	63.79	PREDICTED: transcription factor IBH1-like [Citrus sinensis]	[more]
gi\|641863843\|gb\|KDO82529.1\|	4.1e-11	63.79	hypothetical protein CISIN_1g037825mg [Citrus sinensis]	[more]
gi\|703113881\|ref\|XP_010100497.1\|	2.9e-09	44.19	hypothetical protein L484_027812 [Morus notabilis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0046983	protein dimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G015820.1	CmaCh04G015820.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G015820	Cucsa.285890	Cucumber (Gy14) v1	cgycmaB0804
CmaCh04G015820	Cla010104	Watermelon (97103) v1	cmawmB702
CmaCh04G015820	Csa5G602220	Cucumber (Chinese Long) v2	cmacuB724
CmaCh04G015820	MELO3C012013	Melon (DHL92) v3.5.1	cmameB653
CmaCh04G015820	ClCG05G025160	Watermelon (Charleston Gray)	cmawcgB658
CmaCh04G015820	CSPI05G22850	Wild cucumber (PI 183967)	cmacpiB731
CmaCh04G015820	CmoCh04G016540	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G015820	Lsi04G005260	Bottle gourd (USVL1VR-Ls)	cmalsiB678
CmaCh04G015820	Cp4.1LG01g13210	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G015820	MELO3C012013.2	Melon (DHL92) v3.6.1	cmamedB740
CmaCh04G015820	CsaV3_5G031740	Cucumber (Chinese Long) v3	cmacucB0861
CmaCh04G015820	Cla97C05G107280	Watermelon (97103) v2	cmawmbB762
CmaCh04G015820	Bhi07G001359	Wax gourd	cmawgoB0896
CmaCh04G015820	Carg01771	Silver-seed gourd	carcmaB1170

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G015820	Cucurbita maxima (Rimu)	cmacmaB532
CmaCh04G015820	Cucurbita moschata (Rifu)	cmacmoB732
CmaCh04G015820	Cucurbita pepo (Zucchini)	cmacpeB724