Lsi04G005260 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi04G005260
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Descriptionphy rapidly regulated 1
Locationchr04 : 4874929 .. 4875183 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATATTATAATAATTGTGAGAGCAAAGGAATTGGGAAGGTGAAGTGGCAGAGGAGAGGGAGGCGCGGCGGACGGCACGGCGGCGGCTCAATCCAAATCAAGATGAGAAAGCTGCAGCGGCTTATCCCCGGAGGGCGGAGGCTGAAACCGGACCGGCTATTCTTGAAAACCGCTGATTATATAATGCAATTGAGGTCTCAAGTTCATGTTTTGCAAGCACTTTCCAAGATTTATGATCCTAGGCTTTCTTAA

mRNA sequence

ATGGAATATTATAATAATTGTGAGAGCAAAGGAATTGGGAAGGTGAAGTGGCAGAGGAGAGGGAGGCGCGGCGGACGGCACGGCGGCGGCTCAATCCAAATCAAGATGAGAAAGCTGCAGCGGCTTATCCCCGGAGGGCGGAGGCTGAAACCGGACCGGCTATTCTTGAAAACCGCTGATTATATAATGCAATTGAGGTCTCAAGTTCATGTTTTGCAAGCACTTTCCAAGATTTATGATCCTAGGCTTTCTTAA

Coding sequence (CDS)

ATGGAATATTATAATAATTGTGAGAGCAAAGGAATTGGGAAGGTGAAGTGGCAGAGGAGAGGGAGGCGCGGCGGACGGCACGGCGGCGGCTCAATCCAAATCAAGATGAGAAAGCTGCAGCGGCTTATCCCCGGAGGGCGGAGGCTGAAACCGGACCGGCTATTCTTGAAAACCGCTGATTATATAATGCAATTGAGGTCTCAAGTTCATGTTTTGCAAGCACTTTCCAAGATTTATGATCCTAGGCTTTCTTAA

Protein sequence

MEYYNNCESKGIGKVKWQRRGRRGGRHGGGSIQIKMRKLQRLIPGGRRLKPDRLFLKTADYIMQLRSQVHVLQALSKIYDPRLS
Homology
[Close]
BLAST of Lsi04G005260 vs. TrEMBL
Match: A0A0A0KQB4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G602220 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 8.5e-34
Identity = 75/86 (87.21%), Postives = 80/86 (93.02%), Query Frame = 1 

Query: 2  EYYNNCESKGIGKVKWQRRGRRGGRHGGG---SIQIKMRKLQRLIPGGRRLKPDRLFLKT 61
          +YY+ CESKGIGKV+WQRRGRRGGRHGGG   S+ +KMRKLQRLIPGGRRLKPDRLFLKT
Sbjct: 3  QYYDTCESKGIGKVRWQRRGRRGGRHGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLFLKT 62

Query: 62 ADYIMQLRSQVHVLQALSKIYDPRLS 85
          ADYIMQLRSQVHVLQALSKIYDP LS
Sbjct: 63 ADYIMQLRSQVHVLQALSKIYDPTLS 88

[Close]
BLAST of Lsi04G005260 vs. TrEMBL
Match: A0A0D2UY55_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G343700 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 8.9e-15
Identity = 46/77 (59.74%), Postives = 57/77 (74.03%), Query Frame = 1 

Query: 10 KGIGKVKWQRRGRR-----GGRHGGGSIQIKMRKLQRLIPGGRRLKPDRLFLKTADYIMQ 69
          K   + KW+RR RR      G  G  S++ K++KLQRLIPG + LKPDRLFL+TADYI+Q
Sbjct: 10 KEFSRAKWRRRRRRRWTGDSGDRGSRSVRTKVKKLQRLIPGAKGLKPDRLFLRTADYILQ 69

Query: 70 LRSQVHVLQALSKIYDP 82
          LR QV++LQALSKIY P
Sbjct: 70 LRLQVNILQALSKIYGP 86

[Close]
BLAST of Lsi04G005260 vs. TrEMBL
Match: A0A0D2SJD6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G184100 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 5.7e-14
Identity = 43/79 (54.43%), Postives = 60/79 (75.95%), Query Frame = 1 

Query: 10 KGIGKVKWQRRGRR-----GGRHGGGSIQIKMRKLQRLIPGGRRLKPDRLFLKTADYIMQ 69
          K    VKW+ R RR     GG  GG S+++K+++LQ+LIPGG+ ++PDRLFL+TADYI+ 
Sbjct: 9  KEFSMVKWRMRRRRTACSGGGSTGGRSVRMKIKRLQKLIPGGKLMQPDRLFLRTADYILH 68

Query: 70 LRSQVHVLQALSKIYDPRL 84
          LR Q+++LQALSKIY P +
Sbjct: 69 LRLQLNLLQALSKIYQPSI 87

[Close]
BLAST of Lsi04G005260 vs. TrEMBL
Match: A0A067GSA5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g037825mg PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 4.9e-13
Identity = 43/71 (60.56%), Postives = 55/71 (77.46%), Query Frame = 1 

Query: 10 KGIGKVKWQRRGRRGG-RHGGGSIQIKMRKLQRLIPGGRRLKPDRLFLKTADYIMQLRSQ 69
          KG  KVKW+RR RR        S+++K+ KLQ+LIPGG+ L+PDRLFL+TADYI+ L  Q
Sbjct: 7  KGFAKVKWRRRRRRSAVARPSASVRMKVTKLQKLIPGGQGLQPDRLFLRTADYIVHLNLQ 66

Query: 70 VHVLQALSKIY 80
          ++VLQALSKIY
Sbjct: 67 LNVLQALSKIY 77

[Close]
BLAST of Lsi04G005260 vs. TrEMBL
Match: K7L9K5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G289300 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.8e-12
Identity = 42/71 (59.15%), Postives = 56/71 (78.87%), Query Frame = 1 

Query: 10 KGIGKVKWQRRGRRGGRHGGGSIQIKMRKLQRLIPGGRRLKPDRLFLKTADYIMQLRSQV 69
          K + KVKW RR RR  R  G  ++ +M+KLQRL+PGG  + PDRLFLKTA++I+QLR Q+
Sbjct: 4  KDMAKVKWGRRRRRRRRQEG--VERRMKKLQRLVPGGAGMNPDRLFLKTAEHILQLRLQL 63

Query: 70 HVLQALSKIYD 81
          +VLQALSKI++
Sbjct: 64 NVLQALSKIFN 72

[Close]
BLAST of Lsi04G005260 vs. TAIR10
Match: AT1G23965.1 (AT1G23965.1 unknown protein)

HSP 1 Score: 65.9 bits (159), Expect = 1.4e-11
Identity = 39/73 (53.42%), Postives = 50/73 (68.49%), Query Frame = 1 

Query: 8   ESKGIGKVKWQRRGRRGGRHGGGSIQIKMRKLQRLIPGGRRL-KPDRLFLKTADYIMQLR 67
           ES+   + + Q + + G   G GSIQIKMRKL+ LIPGGRRL +PD L  KTADYIM L 
Sbjct: 42  ESRSNREQRKQTKKKTGRGSGSGSIQIKMRKLRVLIPGGRRLNQPDLLLTKTADYIMHLE 101

Query: 68  SQVHVLQALSKIY 80
            ++  L+A+S IY
Sbjct: 102 LRIRFLKAISDIY 114

[Close]
BLAST of Lsi04G005260 vs. TAIR10
Match: AT1G70270.1 (AT1G70270.1 unknown protein)

HSP 1 Score: 49.3 bits (116), Expect = 1.4e-06
Identity = 27/58 (46.55%), Postives = 40/58 (68.97%), Query Frame = 1 

Query: 27 HGGGS----IQIKMRKLQRLIPGGRRLK-PDRLFLKTADYIMQLRSQVHVLQALSKIY 80
          HG GS    +Q+K+R+LQ LIPGG+    PD L  KT DYI+ L+ ++  L+A+S++Y
Sbjct: 27 HGSGSRSGLLQMKVRRLQILIPGGQTCNHPDLLLSKTVDYIVHLKLKLRFLKAISEMY 84

[Close]
BLAST of Lsi04G005260 vs. NCBI nr
Match: gi|778705118|ref|XP_011655641.1| (PREDICTED: transcription factor PAR2 [Cucumis sativus])

HSP 1 Score: 150.6 bits (379), Expect = 1.2e-33
Identity = 75/86 (87.21%), Postives = 80/86 (93.02%), Query Frame = 1 

Query: 2  EYYNNCESKGIGKVKWQRRGRRGGRHGGG---SIQIKMRKLQRLIPGGRRLKPDRLFLKT 61
          +YY+ CESKGIGKV+WQRRGRRGGRHGGG   S+ +KMRKLQRLIPGGRRLKPDRLFLKT
Sbjct: 3  QYYDTCESKGIGKVRWQRRGRRGGRHGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLFLKT 62

Query: 62 ADYIMQLRSQVHVLQALSKIYDPRLS 85
          ADYIMQLRSQVHVLQALSKIYDP LS
Sbjct: 63 ADYIMQLRSQVHVLQALSKIYDPTLS 88

[Close]
BLAST of Lsi04G005260 vs. NCBI nr
Match: gi|659090850|ref|XP_008446236.1| (PREDICTED: uncharacterized protein LOC103489026 [Cucumis melo])

HSP 1 Score: 146.0 bits (367), Expect = 3.0e-32
Identity = 74/87 (85.06%), Postives = 78/87 (89.66%), Query Frame = 1 

Query: 3  YYNNCESKGIGKVKWQRRGRRGGRHGGG-----SIQIKMRKLQRLIPGGRRLKPDRLFLK 62
          YY+ CES GIGKV+WQRRGRRGGRHGGG     S+ +KMRKLQRLIPGGRRLKPDRLFLK
Sbjct: 4  YYSICESNGIGKVRWQRRGRRGGRHGGGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLFLK 63

Query: 63 TADYIMQLRSQVHVLQALSKIYDPRLS 85
          TADYIMQLRSQVHVLQALSKIYDP LS
Sbjct: 64 TADYIMQLRSQVHVLQALSKIYDPTLS 90

[Close]
BLAST of Lsi04G005260 vs. NCBI nr
Match: gi|802788017|ref|XP_012092068.1| (PREDICTED: transcription factor PAR1 [Jatropha curcas])

HSP 1 Score: 94.7 bits (234), Expect = 8.0e-17
Identity = 50/77 (64.94%), Postives = 61/77 (79.22%), Query Frame = 1 

Query: 5  NNCESKGIGKVKWQRRGRRGGRHGGGSIQIKMRKLQRLIPGGRRLKPDRLFLKTADYIMQ 64
          NN E +   KVKW+RR RR  R   GS++ K++KLQRLIPGG+ L+PD LFL+TADYI+Q
Sbjct: 3  NNNECRDFSKVKWKRRRRRAVR---GSVRSKVKKLQRLIPGGKGLQPDHLFLRTADYILQ 62

Query: 65 LRSQVHVLQALSKIYDP 82
          LR QV+VLQALSKIY P
Sbjct: 63 LRLQVNVLQALSKIYTP 76

[Close]
BLAST of Lsi04G005260 vs. NCBI nr
Match: gi|823216320|ref|XP_012440878.1| (PREDICTED: transcription factor PAR1-like [Gossypium raimondii])

HSP 1 Score: 87.4 bits (215), Expect = 1.3e-14
Identity = 46/77 (59.74%), Postives = 57/77 (74.03%), Query Frame = 1 

Query: 10 KGIGKVKWQRRGRR-----GGRHGGGSIQIKMRKLQRLIPGGRRLKPDRLFLKTADYIMQ 69
          K   + KW+RR RR      G  G  S++ K++KLQRLIPG + LKPDRLFL+TADYI+Q
Sbjct: 10 KEFSRAKWRRRRRRRWTGDSGDRGSRSVRTKVKKLQRLIPGAKGLKPDRLFLRTADYILQ 69

Query: 70 LRSQVHVLQALSKIYDP 82
          LR QV++LQALSKIY P
Sbjct: 70 LRLQVNILQALSKIYGP 86

[Close]
BLAST of Lsi04G005260 vs. NCBI nr
Match: gi|823159182|ref|XP_012479422.1| (PREDICTED: transcription factor PAR1-like [Gossypium raimondii])

HSP 1 Score: 84.7 bits (208), Expect = 8.2e-14
Identity = 43/79 (54.43%), Postives = 60/79 (75.95%), Query Frame = 1 

Query: 10 KGIGKVKWQRRGRR-----GGRHGGGSIQIKMRKLQRLIPGGRRLKPDRLFLKTADYIMQ 69
          K    VKW+ R RR     GG  GG S+++K+++LQ+LIPGG+ ++PDRLFL+TADYI+ 
Sbjct: 8  KEFSMVKWRMRRRRTACSGGGSTGGRSVRMKIKRLQKLIPGGKLMQPDRLFLRTADYILH 67

Query: 70 LRSQVHVLQALSKIYDPRL 84
          LR Q+++LQALSKIY P +
Sbjct: 68 LRLQLNLLQALSKIYQPSI 86

The following BLAST results are available for this feature:
BLAST of Lsi04G005260 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi04G005260 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQB4_CUCSA8.5e-3487.21Uncharacterized protein OS=Cucumis sativus GN=Csa_5G602220 PE=4 SV=1[more]
A0A0D2UY55_GOSRA8.9e-1559.74Uncharacterized protein OS=Gossypium raimondii GN=B456_009G343700 PE=4 SV=1[more]
A0A0D2SJD6_GOSRA5.7e-1454.43Uncharacterized protein OS=Gossypium raimondii GN=B456_005G184100 PE=4 SV=1[more]
A0A067GSA5_CITSI4.9e-1360.56Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g037825mg PE=4 SV=1[more]
K7L9K5_SOYBN1.8e-1259.15Uncharacterized protein OS=Glycine max GN=GLYMA_08G289300 PE=4 SV=1[more]
BLAST of Lsi04G005260 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G23965.11.4e-1153.42 unknown protein[more]
AT1G70270.11.4e-0646.55 unknown protein[more]
BLAST of Lsi04G005260 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778705118|ref|XP_011655641.1|1.2e-3387.21PREDICTED: transcription factor PAR2 [Cucumis sativus][more]
gi|659090850|ref|XP_008446236.1|3.0e-3285.06PREDICTED: uncharacterized protein LOC103489026 [Cucumis melo][more]
gi|802788017|ref|XP_012092068.1|8.0e-1764.94PREDICTED: transcription factor PAR1 [Jatropha curcas][more]
gi|823216320|ref|XP_012440878.1|1.3e-1459.74PREDICTED: transcription factor PAR1-like [Gossypium raimondii][more]
gi|823159182|ref|XP_012479422.1|8.2e-1454.43PREDICTED: transcription factor PAR1-like [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0046983 protein dimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G005260.1Lsi04G005260.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33124FAMILY NOT NAMEDcoord: 32..80
score: 2.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi04G005260Csa5G602220Cucumber (Chinese Long) v2culsiB368
Lsi04G005260CSPI05G22850Wild cucumber (PI 183967)cpilsiB372
Lsi04G005260Cucsa.285890Cucumber (Gy14) v1cgylsiB465
Lsi04G005260CmaCh04G015820Cucurbita maxima (Rimu)cmalsiB678
Lsi04G005260CmoCh04G016540Cucurbita moschata (Rifu)cmolsiB671
Lsi04G005260Cla010104Watermelon (97103) v1lsiwmB312
Lsi04G005260MELO3C012013Melon (DHL92) v3.5.1lsimeB281
Lsi04G005260ClCG05G025160Watermelon (Charleston Gray)lsiwcgB283
Lsi04G005260MELO3C012013.2Melon (DHL92) v3.6.1lsimedB297
Lsi04G005260Cla97C05G107280Watermelon (97103) v2lsiwmbB284
Lsi04G005260Bhi07G001359Wax gourdlsiwgoB392
Lsi04G005260Cp4.1LG01g04050Cucurbita pepo (Zucchini)cpelsiB363
Lsi04G005260Cp4.1LG01g13210Cucurbita pepo (Zucchini)cpelsiB360
Lsi04G005260Carg01771Silver-seed gourdcarlsiB764
Lsi04G005260CsaV3_5G031740Cucumber (Chinese Long) v3cuclsiB393
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi04G005260Bottle gourd (USVL1VR-Ls)lsilsiB097
Lsi04G005260Bottle gourd (USVL1VR-Ls)lsilsiB139
Lsi04G005260Cucumber (Gy14) v1cgylsiB119
Lsi04G005260Cucumber (Gy14) v1cgylsiB554
Lsi04G005260Cucurbita maxima (Rimu)cmalsiB381
Lsi04G005260Cucurbita maxima (Rimu)cmalsiB681
Lsi04G005260Cucurbita maxima (Rimu)cmalsiB726
Lsi04G005260Cucurbita moschata (Rifu)cmolsiB674
Lsi04G005260Cucurbita moschata (Rifu)cmolsiB716
Lsi04G005260Cucurbita pepo (Zucchini)cpelsiB089
Lsi04G005260Wild cucumber (PI 183967)cpilsiB050
Lsi04G005260Wild cucumber (PI 183967)cpilsiB193
Lsi04G005260Cucumber (Chinese Long) v2culsiB051
Lsi04G005260Melon (DHL92) v3.5.1lsimeB289
Lsi04G005260Watermelon (Charleston Gray)lsiwcgB258
Lsi04G005260Watermelon (Charleston Gray)lsiwcgB274
Lsi04G005260Watermelon (97103) v1lsiwmB323
Lsi04G005260Cucumber (Gy14) v2cgyblsiB047
Lsi04G005260Cucumber (Gy14) v2cgyblsiB052
Lsi04G005260Cucumber (Gy14) v2cgyblsiB179
Lsi04G005260Cucumber (Gy14) v2cgyblsiB337
Lsi04G005260Melon (DHL92) v3.6.1lsimedB303
Lsi04G005260Melon (DHL92) v3.6.1lsimedB308
Lsi04G005260Melon (DHL92) v3.6.1lsimedB327
Lsi04G005260Cucumber (Chinese Long) v3cuclsiB064
Lsi04G005260Cucumber (Chinese Long) v3cuclsiB057
Lsi04G005260Cucumber (Chinese Long) v3cuclsiB212
Lsi04G005260Watermelon (97103) v2lsiwmbB261
Lsi04G005260Wax gourdlsiwgoB376
Lsi04G005260Wax gourdlsiwgoB380