Cp4.1LG01g13210 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g13210
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG01 : 8430877 .. 8431140 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATATTACAATTGTGATGAGACCAGAGGGATTGCGAAGGTGAAGTGGCAGAGGAGAGGGAGGCGCGGCGGACGGCACGGCGGCGGCGGCGGCAGCTCCGTCCACATGAAGTTGAGAAAGCTGCAGCGGCTCATCCCCGGAGGACGGAGGCTGAAACCGGACCGGCTATTCTTAAAAACGGCGGATTATATTATGCAATTGAGGTCTCAAGTTCATGTTCTGCAAGCGCTTTCCAAGATCTATGACCCCCAACTTTCTTGA

mRNA sequence

ATGGAATATTACAATTGTGATGAGACCAGAGGGATTGCGAAGGTGAAGTGGCAGAGGAGAGGGAGGCGCGGCGGACGGCACGGCGGCGGCGGCGGCAGCTCCGTCCACATGAAGTTGAGAAAGCTGCAGCGGCTCATCCCCGGAGGACGGAGGCTGAAACCGGACCGGCTATTCTTAAAAACGGCGGATTATATTATGCAATTGAGGTCTCAAGTTCATGTTCTGCAAGCGCTTTCCAAGATCTATGACCCCCAACTTTCTTGA

Coding sequence (CDS)

ATGGAATATTACAATTGTGATGAGACCAGAGGGATTGCGAAGGTGAAGTGGCAGAGGAGAGGGAGGCGCGGCGGACGGCACGGCGGCGGCGGCGGCAGCTCCGTCCACATGAAGTTGAGAAAGCTGCAGCGGCTCATCCCCGGAGGACGGAGGCTGAAACCGGACCGGCTATTCTTAAAAACGGCGGATTATATTATGCAATTGAGGTCTCAAGTTCATGTTCTGCAAGCGCTTTCCAAGATCTATGACCCCCAACTTTCTTGA

Protein sequence

MEYYNCDETRGIAKVKWQRRGRRGGRHGGGGGSSVHMKLRKLQRLIPGGRRLKPDRLFLKTADYIMQLRSQVHVLQALSKIYDPQLS
Homology
[Close]
BLAST of Cp4.1LG01g13210 vs. TrEMBL
Match: A0A0A0KQB4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G602220 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 4.7e-35
Identity = 75/86 (87.21%), Postives = 81/86 (94.19%), Query Frame = 1 

Query: 2  EYYNCDETRGIAKVKWQRRGRRGGRHGGGGGSSVHMKLRKLQRLIPGGRRLKPDRLFLKT 61
          +YY+  E++GI KV+WQRRGRRGGRHGGGGG SVHMK+RKLQRLIPGGRRLKPDRLFLKT
Sbjct: 3  QYYDTCESKGIGKVRWQRRGRRGGRHGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLFLKT 62

Query: 62 ADYIMQLRSQVHVLQALSKIYDPQLS 88
          ADYIMQLRSQVHVLQALSKIYDP LS
Sbjct: 63 ADYIMQLRSQVHVLQALSKIYDPTLS 88

[Close]
BLAST of Cp4.1LG01g13210 vs. TrEMBL
Match: A0A0D2UY55_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G343700 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 6.4e-16
Identity = 51/86 (59.30%), Postives = 61/86 (70.93%), Query Frame = 1 

Query: 1  MEYYNCDETRGIAKVKWQRRGRRG--GRHGGGGGSSVHMKLRKLQRLIPGGRRLKPDRLF 60
          ME   C E    ++ KW+RR RR   G  G  G  SV  K++KLQRLIPG + LKPDRLF
Sbjct: 4  MELRRCKE---FSRAKWRRRRRRRWTGDSGDRGSRSVRTKVKKLQRLIPGAKGLKPDRLF 63

Query: 61 LKTADYIMQLRSQVHVLQALSKIYDP 85
          L+TADYI+QLR QV++LQALSKIY P
Sbjct: 64 LRTADYILQLRLQVNILQALSKIYGP 86

[Close]
BLAST of Cp4.1LG01g13210 vs. TrEMBL
Match: A0A0D2SJD6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G184100 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 4.1e-15
Identity = 45/74 (60.81%), Postives = 59/74 (79.73%), Query Frame = 1 

Query: 15 VKWQRRGRRGGRHGGG--GGSSVHMKLRKLQRLIPGGRRLKPDRLFLKTADYIMQLRSQV 74
          VKW+ R RR    GGG  GG SV MK+++LQ+LIPGG+ ++PDRLFL+TADYI+ LR Q+
Sbjct: 14 VKWRMRRRRTACSGGGSTGGRSVRMKIKRLQKLIPGGKLMQPDRLFLRTADYILHLRLQL 73

Query: 75 HVLQALSKIYDPQL 87
          ++LQALSKIY P +
Sbjct: 74 NLLQALSKIYQPSI 87

[Close]
BLAST of Cp4.1LG01g13210 vs. TrEMBL
Match: A0A067GSA5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g037825mg PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.9e-13
Identity = 45/73 (61.64%), Postives = 56/73 (76.71%), Query Frame = 1 

Query: 10 RGIAKVKWQRRGRRGGRHGGGGGSSVHMKLRKLQRLIPGGRRLKPDRLFLKTADYIMQLR 69
          +G AKVKW+RR RR         +SV MK+ KLQ+LIPGG+ L+PDRLFL+TADYI+ L 
Sbjct: 7  KGFAKVKWRRRRRRSAV--ARPSASVRMKVTKLQKLIPGGQGLQPDRLFLRTADYIVHLN 66

Query: 70 SQVHVLQALSKIY 83
           Q++VLQALSKIY
Sbjct: 67 LQLNVLQALSKIY 77

[Close]
BLAST of Cp4.1LG01g13210 vs. TrEMBL
Match: K7L9K5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G289300 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.3e-12
Identity = 42/74 (56.76%), Postives = 56/74 (75.68%), Query Frame = 1 

Query: 10 RGIAKVKWQRRGRRGGRHGGGGGSSVHMKLRKLQRLIPGGRRLKPDRLFLKTADYIMQLR 69
          + +AKVKW RR RR  R  G     V  +++KLQRL+PGG  + PDRLFLKTA++I+QLR
Sbjct: 4  KDMAKVKWGRRRRRRRRQEG-----VERRMKKLQRLVPGGAGMNPDRLFLKTAEHILQLR 63

Query: 70 SQVHVLQALSKIYD 84
           Q++VLQALSKI++
Sbjct: 64 LQLNVLQALSKIFN 72

[Close]
BLAST of Cp4.1LG01g13210 vs. TAIR10
Match: AT1G23965.1 (AT1G23965.1 unknown protein)

HSP 1 Score: 57.4 bits (137), Expect = 5.2e-09
Identity = 33/66 (50.00%), Postives = 44/66 (66.67%), Query Frame = 1 

Query: 18  QRRGRRGGRHGGGGGSSVHMKLRKLQRLIPGGRRL-KPDRLFLKTADYIMQLRSQVHVLQ 77
           QR+  +     G G  S+ +K+RKL+ LIPGGRRL +PD L  KTADYIM L  ++  L+
Sbjct: 49  QRKQTKKKTGRGSGSGSIQIKMRKLRVLIPGGRRLNQPDLLLTKTADYIMHLELRIRFLK 108

Query: 78  ALSKIY 83
           A+S IY
Sbjct: 109 AISDIY 114

[Close]
BLAST of Cp4.1LG01g13210 vs. TAIR10
Match: AT1G70270.1 (AT1G70270.1 unknown protein)

HSP 1 Score: 47.0 bits (110), Expect = 7.0e-06
Identity = 28/77 (36.36%), Postives = 46/77 (59.74%), Query Frame = 1 

Query: 10 RGIAKVKWQRRGRRGGRHGGGGGSS---VHMKLRKLQRLIPGGRRLK-PDRLFLKTADYI 69
          + + K    ++ +   + G G GS    + MK+R+LQ LIPGG+    PD L  KT DYI
Sbjct: 8  KSMVKQTMNKKKKNNNKKGHGSGSRSGLLQMKVRRLQILIPGGQTCNHPDLLLSKTVDYI 67

Query: 70 MQLRSQVHVLQALSKIY 83
          + L+ ++  L+A+S++Y
Sbjct: 68 VHLKLKLRFLKAISEMY 84

[Close]
BLAST of Cp4.1LG01g13210 vs. NCBI nr
Match: gi|778705118|ref|XP_011655641.1| (PREDICTED: transcription factor PAR2 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 6.7e-35
Identity = 75/86 (87.21%), Postives = 81/86 (94.19%), Query Frame = 1 

Query: 2  EYYNCDETRGIAKVKWQRRGRRGGRHGGGGGSSVHMKLRKLQRLIPGGRRLKPDRLFLKT 61
          +YY+  E++GI KV+WQRRGRRGGRHGGGGG SVHMK+RKLQRLIPGGRRLKPDRLFLKT
Sbjct: 3  QYYDTCESKGIGKVRWQRRGRRGGRHGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLFLKT 62

Query: 62 ADYIMQLRSQVHVLQALSKIYDPQLS 88
          ADYIMQLRSQVHVLQALSKIYDP LS
Sbjct: 63 ADYIMQLRSQVHVLQALSKIYDPTLS 88

[Close]
BLAST of Cp4.1LG01g13210 vs. NCBI nr
Match: gi|659090850|ref|XP_008446236.1| (PREDICTED: uncharacterized protein LOC103489026 [Cucumis melo])

HSP 1 Score: 148.3 bits (373), Expect = 6.3e-33
Identity = 75/87 (86.21%), Postives = 79/87 (90.80%), Query Frame = 1 

Query: 3  YYNCDETRGIAKVKWQRRGRRGGRHGGGGGS--SVHMKLRKLQRLIPGGRRLKPDRLFLK 62
          YY+  E+ GI KV+WQRRGRRGGRHGGGGG   SVHMK+RKLQRLIPGGRRLKPDRLFLK
Sbjct: 4  YYSICESNGIGKVRWQRRGRRGGRHGGGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLFLK 63

Query: 63 TADYIMQLRSQVHVLQALSKIYDPQLS 88
          TADYIMQLRSQVHVLQALSKIYDP LS
Sbjct: 64 TADYIMQLRSQVHVLQALSKIYDPTLS 90

[Close]
BLAST of Cp4.1LG01g13210 vs. NCBI nr
Match: gi|802788017|ref|XP_012092068.1| (PREDICTED: transcription factor PAR1 [Jatropha curcas])

HSP 1 Score: 93.2 bits (230), Expect = 2.4e-16
Identity = 50/80 (62.50%), Postives = 60/80 (75.00%), Query Frame = 1 

Query: 5  NCDETRGIAKVKWQRRGRRGGRHGGGGGSSVHMKLRKLQRLIPGGRRLKPDRLFLKTADY 64
          N +E R  +KVKW+RR RR  R       SV  K++KLQRLIPGG+ L+PD LFL+TADY
Sbjct: 3  NNNECRDFSKVKWKRRRRRAVR------GSVRSKVKKLQRLIPGGKGLQPDHLFLRTADY 62

Query: 65 IMQLRSQVHVLQALSKIYDP 85
          I+QLR QV+VLQALSKIY P
Sbjct: 63 ILQLRLQVNVLQALSKIYTP 76

[Close]
BLAST of Cp4.1LG01g13210 vs. NCBI nr
Match: gi|823216320|ref|XP_012440878.1| (PREDICTED: transcription factor PAR1-like [Gossypium raimondii])

HSP 1 Score: 91.3 bits (225), Expect = 9.1e-16
Identity = 51/86 (59.30%), Postives = 61/86 (70.93%), Query Frame = 1 

Query: 1  MEYYNCDETRGIAKVKWQRRGRRG--GRHGGGGGSSVHMKLRKLQRLIPGGRRLKPDRLF 60
          ME   C E    ++ KW+RR RR   G  G  G  SV  K++KLQRLIPG + LKPDRLF
Sbjct: 4  MELRRCKE---FSRAKWRRRRRRRWTGDSGDRGSRSVRTKVKKLQRLIPGAKGLKPDRLF 63

Query: 61 LKTADYIMQLRSQVHVLQALSKIYDP 85
          L+TADYI+QLR QV++LQALSKIY P
Sbjct: 64 LRTADYILQLRLQVNILQALSKIYGP 86

[Close]
BLAST of Cp4.1LG01g13210 vs. NCBI nr
Match: gi|823159182|ref|XP_012479422.1| (PREDICTED: transcription factor PAR1-like [Gossypium raimondii])

HSP 1 Score: 88.6 bits (218), Expect = 5.9e-15
Identity = 45/74 (60.81%), Postives = 59/74 (79.73%), Query Frame = 1 

Query: 15 VKWQRRGRRGGRHGGG--GGSSVHMKLRKLQRLIPGGRRLKPDRLFLKTADYIMQLRSQV 74
          VKW+ R RR    GGG  GG SV MK+++LQ+LIPGG+ ++PDRLFL+TADYI+ LR Q+
Sbjct: 13 VKWRMRRRRTACSGGGSTGGRSVRMKIKRLQKLIPGGKLMQPDRLFLRTADYILHLRLQL 72

Query: 75 HVLQALSKIYDPQL 87
          ++LQALSKIY P +
Sbjct: 73 NLLQALSKIYQPSI 86

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g13210 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g13210 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQB4_CUCSA4.7e-3587.21Uncharacterized protein OS=Cucumis sativus GN=Csa_5G602220 PE=4 SV=1[more]
A0A0D2UY55_GOSRA6.4e-1659.30Uncharacterized protein OS=Gossypium raimondii GN=B456_009G343700 PE=4 SV=1[more]
A0A0D2SJD6_GOSRA4.1e-1560.81Uncharacterized protein OS=Gossypium raimondii GN=B456_005G184100 PE=4 SV=1[more]
A0A067GSA5_CITSI3.9e-1361.64Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g037825mg PE=4 SV=1[more]
K7L9K5_SOYBN4.3e-1256.76Uncharacterized protein OS=Glycine max GN=GLYMA_08G289300 PE=4 SV=1[more]
BLAST of Cp4.1LG01g13210 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G23965.15.2e-0950.00 unknown protein[more]
AT1G70270.17.0e-0636.36 unknown protein[more]
BLAST of Cp4.1LG01g13210 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778705118|ref|XP_011655641.1|6.7e-3587.21PREDICTED: transcription factor PAR2 [Cucumis sativus][more]
gi|659090850|ref|XP_008446236.1|6.3e-3386.21PREDICTED: uncharacterized protein LOC103489026 [Cucumis melo][more]
gi|802788017|ref|XP_012092068.1|2.4e-1662.50PREDICTED: transcription factor PAR1 [Jatropha curcas][more]
gi|823216320|ref|XP_012440878.1|9.1e-1659.30PREDICTED: transcription factor PAR1-like [Gossypium raimondii][more]
gi|823159182|ref|XP_012479422.1|5.9e-1560.81PREDICTED: transcription factor PAR1-like [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0046983 protein dimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g13210.1Cp4.1LG01g13210.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33124FAMILY NOT NAMEDcoord: 35..83
score: 1.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g13210Cucsa.285890Cucumber (Gy14) v1cgycpeB0754
Cp4.1LG01g13210CmaCh04G015820Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g13210CmoCh04G016540Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g13210Cla010104Watermelon (97103) v1cpewmB432
Cp4.1LG01g13210Csa5G602220Cucumber (Chinese Long) v2cpecuB416
Cp4.1LG01g13210MELO3C012013Melon (DHL92) v3.5.1cpemeB377
Cp4.1LG01g13210ClCG05G025160Watermelon (Charleston Gray)cpewcgB393
Cp4.1LG01g13210CSPI05G22850Wild cucumber (PI 183967)cpecpiB415
Cp4.1LG01g13210Lsi04G005260Bottle gourd (USVL1VR-Ls)cpelsiB360
Cp4.1LG01g13210MELO3C012013.2Melon (DHL92) v3.6.1cpemedB437
Cp4.1LG01g13210CsaV3_5G031740Cucumber (Chinese Long) v3cpecucB0518
Cp4.1LG01g13210Bhi07G001359Wax gourdcpewgoB0562
Cp4.1LG01g13210Carg01771Silver-seed gourdcarcpeB1177
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG01g13210Cp4.1LG01g04050Cucurbita pepo (Zucchini)cpecpeB375
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g13210Cucumber (Gy14) v2cgybcpeB626