Csa5G602220 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G602220
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 22143128 .. 22143602 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGAACACAAACCCCCCTCTCTTTCCTACTTCCAAAAATTTCCCATTTTGTATCTCTCTCTCTCTCTCTCTCTCTCTATTTTCCCCCAACGCTTCTTTTAAATTACCTTTATTCTTTTGTAAACTAATTTTGTTATATCATTTTCACTCCTTATTTTAGTTGAAGAAAATGGATCAATATTATGATACTTGTGAGAGCAAAGGAATTGGGAAAGTGAGGTGGCAGAGGAGAGGGAGGCGCGGTGGACGGCACGGAGGTGGTGGTGGTGGTTCCGTCCATATGAAGATGAGAAAACTGCAGCGCCTCATCCCTGGAGGGCGGAGGCTGAAACCGGACCGGTTGTTCTTGAAAACGGCGGATTATATAATGCAATTGAGGTCTCAAGTTCATGTTTTACAAGCACTTTCCAAGATTTATGACCCTACACTTTCTAATTACTGATATAAATTCATCTCTATCTTTTTTCCCTTTTTCT

mRNA sequence

ATGGATCAATATTATGATACTTGTGAGAGCAAAGGAATTGGGAAAGTGAGGTGGCAGAGGAGAGGGAGGCGCGGTGGACGGCACGGAGGTGGTGGTGGTGGTTCCGTCCATATGAAGATGAGAAAACTGCAGCGCCTCATCCCTGGAGGGCGGAGGCTGAAACCGGACCGGTTGTTCTTGAAAACGGCGGATTATATAATGCAATTGAGGTCTCAAGTTCATGTTTTACAAGCACTTTCCAAGATTTATGACCCTACACTTTCTAATTACTGA

Coding sequence (CDS)

ATGGATCAATATTATGATACTTGTGAGAGCAAAGGAATTGGGAAAGTGAGGTGGCAGAGGAGAGGGAGGCGCGGTGGACGGCACGGAGGTGGTGGTGGTGGTTCCGTCCATATGAAGATGAGAAAACTGCAGCGCCTCATCCCTGGAGGGCGGAGGCTGAAACCGGACCGGTTGTTCTTGAAAACGGCGGATTATATAATGCAATTGAGGTCTCAAGTTCATGTTTTACAAGCACTTTCCAAGATTTATGACCCTACACTTTCTAATTACTGA

Protein sequence

MDQYYDTCESKGIGKVRWQRRGRRGGRHGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLFLKTADYIMQLRSQVHVLQALSKIYDPTLSNY*
Homology
[Close]
BLAST of Csa5G602220 vs. TrEMBL
Match: A0A0A0KQB4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G602220 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 1.4e-45
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 

Query: 1  MDQYYDTCESKGIGKVRWQRRGRRGGRHGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLFL 60
          MDQYYDTCESKGIGKVRWQRRGRRGGRHGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLFL
Sbjct: 1  MDQYYDTCESKGIGKVRWQRRGRRGGRHGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLFL 60

Query: 61 KTADYIMQLRSQVHVLQALSKIYDPTLSNY 91
          KTADYIMQLRSQVHVLQALSKIYDPTLSNY
Sbjct: 61 KTADYIMQLRSQVHVLQALSKIYDPTLSNY 90

[Close]
BLAST of Csa5G602220 vs. TrEMBL
Match: A0A0D2SJD6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G184100 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.3e-16
Identity = 45/79 (56.96%), Postives = 61/79 (77.22%), Query Frame = 1 

Query: 11 KGIGKVRWQRRGRRGGRHGGG--GGGSVHMKMRKLQRLIPGGRRLKPDRLFLKTADYIMQ 70
          K    V+W+ R RR    GGG  GG SV MK+++LQ+LIPGG+ ++PDRLFL+TADYI+ 
Sbjct: 9  KEFSMVKWRMRRRRTACSGGGSTGGRSVRMKIKRLQKLIPGGKLMQPDRLFLRTADYILH 68

Query: 71 LRSQVHVLQALSKIYDPTL 88
          LR Q+++LQALSKIY P++
Sbjct: 69 LRLQLNLLQALSKIYQPSI 87

[Close]
BLAST of Csa5G602220 vs. TrEMBL
Match: A0A0D2UY55_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G343700 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.9e-16
Identity = 47/78 (60.26%), Postives = 58/78 (74.36%), Query Frame = 1 

Query: 11 KGIGKVRWQRRGRRG--GRHGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLFLKTADYIMQ 70
          K   + +W+RR RR   G  G  G  SV  K++KLQRLIPG + LKPDRLFL+TADYI+Q
Sbjct: 10 KEFSRAKWRRRRRRRWTGDSGDRGSRSVRTKVKKLQRLIPGAKGLKPDRLFLRTADYILQ 69

Query: 71 LRSQVHVLQALSKIYDPT 87
          LR QV++LQALSKIY P+
Sbjct: 70 LRLQVNILQALSKIYGPS 87

[Close]
BLAST of Csa5G602220 vs. TrEMBL
Match: A0A067GSA5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g037825mg PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 6.2e-14
Identity = 44/73 (60.27%), Postives = 54/73 (73.97%), Query Frame = 1 

Query: 11 KGIGKVRWQRRGRRGGRHGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLFLKTADYIMQLR 70
          KG  KV+W+RR RR          SV MK+ KLQ+LIPGG+ L+PDRLFL+TADYI+ L 
Sbjct: 7  KGFAKVKWRRRRRRSAV--ARPSASVRMKVTKLQKLIPGGQGLQPDRLFLRTADYIVHLN 66

Query: 71 SQVHVLQALSKIY 84
           Q++VLQALSKIY
Sbjct: 67 LQLNVLQALSKIY 77

[Close]
BLAST of Csa5G602220 vs. TrEMBL
Match: K7L9K5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G289300 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 4.0e-13
Identity = 42/74 (56.76%), Postives = 55/74 (74.32%), Query Frame = 1 

Query: 11 KGIGKVRWQRRGRRGGRHGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLFLKTADYIMQLR 70
          K + KV+W RR RR  R  G     V  +M+KLQRL+PGG  + PDRLFLKTA++I+QLR
Sbjct: 4  KDMAKVKWGRRRRRRRRQEG-----VERRMKKLQRLVPGGAGMNPDRLFLKTAEHILQLR 63

Query: 71 SQVHVLQALSKIYD 85
           Q++VLQALSKI++
Sbjct: 64 LQLNVLQALSKIFN 72

[Close]
BLAST of Csa5G602220 vs. TAIR10
Match: AT1G23965.1 (AT1G23965.1 unknown protein)

HSP 1 Score: 67.0 bits (162), Expect = 6.8e-12
Identity = 36/68 (52.94%), Postives = 44/68 (64.71%), Query Frame = 1 

Query: 17  RWQRRGRRGGRHGGGGGGSVHMKMRKLQRLIPGGRRL-KPDRLFLKTADYIMQLRSQVHV 76
           R QR+  +     G G GS+ +KMRKL+ LIPGGRRL +PD L  KTADYIM L  ++  
Sbjct: 47  REQRKQTKKKTGRGSGSGSIQIKMRKLRVLIPGGRRLNQPDLLLTKTADYIMHLELRIRF 106

Query: 77  LQALSKIY 84
           L+A+S IY
Sbjct: 107 LKAISDIY 114

[Close]
BLAST of Csa5G602220 vs. TAIR10
Match: AT1G70270.1 (AT1G70270.1 unknown protein)

HSP 1 Score: 52.4 bits (124), Expect = 1.7e-07
Identity = 26/66 (39.39%), Postives = 39/66 (59.09%), Query Frame = 1 

Query: 19 QRRGRRGGRHGGGGGGSVHMKMRKLQRLIPGGRRLK-PDRLFLKTADYIMQLRSQVHVLQ 78
          ++   + G   G   G + MK+R+LQ LIPGG+    PD L  KT DYI+ L+ ++  L+
Sbjct: 19 KKNNNKKGHGSGSRSGLLQMKVRRLQILIPGGQTCNHPDLLLSKTVDYIVHLKLKLRFLK 78

Query: 79 ALSKIY 84
          A+S++Y
Sbjct: 79 AISEMY 84

[Close]
BLAST of Csa5G602220 vs. NCBI nr
Match: gi|778705118|ref|XP_011655641.1| (PREDICTED: transcription factor PAR2 [Cucumis sativus])

HSP 1 Score: 189.9 bits (481), Expect = 2.0e-45
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 

Query: 1  MDQYYDTCESKGIGKVRWQRRGRRGGRHGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLFL 60
          MDQYYDTCESKGIGKVRWQRRGRRGGRHGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLFL
Sbjct: 1  MDQYYDTCESKGIGKVRWQRRGRRGGRHGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLFL 60

Query: 61 KTADYIMQLRSQVHVLQALSKIYDPTLSNY 91
          KTADYIMQLRSQVHVLQALSKIYDPTLSNY
Sbjct: 61 KTADYIMQLRSQVHVLQALSKIYDPTLSNY 90

[Close]
BLAST of Csa5G602220 vs. NCBI nr
Match: gi|659090850|ref|XP_008446236.1| (PREDICTED: uncharacterized protein LOC103489026 [Cucumis melo])

HSP 1 Score: 172.6 bits (436), Expect = 3.3e-40
Identity = 84/91 (92.31%), Postives = 86/91 (94.51%), Query Frame = 1 

Query: 1  MDQYYDTCESKGIGKVRWQRRGRRGGRHGGGGGG--SVHMKMRKLQRLIPGGRRLKPDRL 60
          M++YY  CES GIGKVRWQRRGRRGGRHGGGGGG  SVHMKMRKLQRLIPGGRRLKPDRL
Sbjct: 1  MERYYSICESNGIGKVRWQRRGRRGGRHGGGGGGGGSVHMKMRKLQRLIPGGRRLKPDRL 60

Query: 61 FLKTADYIMQLRSQVHVLQALSKIYDPTLSN 90
          FLKTADYIMQLRSQVHVLQALSKIYDPTLSN
Sbjct: 61 FLKTADYIMQLRSQVHVLQALSKIYDPTLSN 91

[Close]
BLAST of Csa5G602220 vs. NCBI nr
Match: gi|802788017|ref|XP_012092068.1| (PREDICTED: transcription factor PAR1 [Jatropha curcas])

HSP 1 Score: 92.8 bits (229), Expect = 3.3e-16
Identity = 48/77 (62.34%), Postives = 58/77 (75.32%), Query Frame = 1 

Query: 9  ESKGIGKVRWQRRGRRGGRHGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLFLKTADYIMQ 68
          E +   KV+W+RR RR  R      GSV  K++KLQRLIPGG+ L+PD LFL+TADYI+Q
Sbjct: 6  ECRDFSKVKWKRRRRRAVR------GSVRSKVKKLQRLIPGGKGLQPDHLFLRTADYILQ 65

Query: 69 LRSQVHVLQALSKIYDP 86
          LR QV+VLQALSKIY P
Sbjct: 66 LRLQVNVLQALSKIYTP 76

[Close]
BLAST of Csa5G602220 vs. NCBI nr
Match: gi|763764036|gb|KJB31290.1| (hypothetical protein B456_005G184100 [Gossypium raimondii])

HSP 1 Score: 92.8 bits (229), Expect = 3.3e-16
Identity = 45/79 (56.96%), Postives = 61/79 (77.22%), Query Frame = 1 

Query: 11 KGIGKVRWQRRGRRGGRHGGG--GGGSVHMKMRKLQRLIPGGRRLKPDRLFLKTADYIMQ 70
          K    V+W+ R RR    GGG  GG SV MK+++LQ+LIPGG+ ++PDRLFL+TADYI+ 
Sbjct: 9  KEFSMVKWRMRRRRTACSGGGSTGGRSVRMKIKRLQKLIPGGKLMQPDRLFLRTADYILH 68

Query: 71 LRSQVHVLQALSKIYDPTL 88
          LR Q+++LQALSKIY P++
Sbjct: 69 LRLQLNLLQALSKIYQPSI 87

[Close]
BLAST of Csa5G602220 vs. NCBI nr
Match: gi|823159182|ref|XP_012479422.1| (PREDICTED: transcription factor PAR1-like [Gossypium raimondii])

HSP 1 Score: 92.8 bits (229), Expect = 3.3e-16
Identity = 45/79 (56.96%), Postives = 61/79 (77.22%), Query Frame = 1 

Query: 11 KGIGKVRWQRRGRRGGRHGGG--GGGSVHMKMRKLQRLIPGGRRLKPDRLFLKTADYIMQ 70
          K    V+W+ R RR    GGG  GG SV MK+++LQ+LIPGG+ ++PDRLFL+TADYI+ 
Sbjct: 8  KEFSMVKWRMRRRRTACSGGGSTGGRSVRMKIKRLQKLIPGGKLMQPDRLFLRTADYILH 67

Query: 71 LRSQVHVLQALSKIYDPTL 88
          LR Q+++LQALSKIY P++
Sbjct: 68 LRLQLNLLQALSKIYQPSI 86

The following BLAST results are available for this feature:
BLAST of Csa5G602220 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQB4_CUCSA1.4e-45100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G602220 PE=4 SV=1[more]
A0A0D2SJD6_GOSRA2.3e-1656.96Uncharacterized protein OS=Gossypium raimondii GN=B456_005G184100 PE=4 SV=1[more]
A0A0D2UY55_GOSRA3.9e-1660.26Uncharacterized protein OS=Gossypium raimondii GN=B456_009G343700 PE=4 SV=1[more]
A0A067GSA5_CITSI6.2e-1460.27Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g037825mg PE=4 SV=1[more]
K7L9K5_SOYBN4.0e-1356.76Uncharacterized protein OS=Glycine max GN=GLYMA_08G289300 PE=4 SV=1[more]
BLAST of Csa5G602220 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G23965.16.8e-1252.94 unknown protein[more]
AT1G70270.11.7e-0739.39 unknown protein[more]
BLAST of Csa5G602220 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778705118|ref|XP_011655641.1|2.0e-45100.00PREDICTED: transcription factor PAR2 [Cucumis sativus][more]
gi|659090850|ref|XP_008446236.1|3.3e-4092.31PREDICTED: uncharacterized protein LOC103489026 [Cucumis melo][more]
gi|802788017|ref|XP_012092068.1|3.3e-1662.34PREDICTED: transcription factor PAR1 [Jatropha curcas][more]
gi|763764036|gb|KJB31290.1|3.3e-1656.96hypothetical protein B456_005G184100 [Gossypium raimondii][more]
gi|823159182|ref|XP_012479422.1|3.3e-1656.96PREDICTED: transcription factor PAR1-like [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU087793cucumber EST collection version 3.0transcribed_cluster
CU122898cucumber EST collection version 3.0transcribed_cluster
CU123867cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G602220.1Csa5G602220.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU087793CU087793transcribed_cluster
CU123867CU123867transcribed_cluster
CU122898CU122898transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33124FAMILY NOT NAMEDcoord: 36..84
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa5G602220Cla010104Watermelon (97103) v1cuwmB401
Csa5G602220MELO3C012013Melon (DHL92) v3.5.1cumeB377
Csa5G602220ClCG05G025160Watermelon (Charleston Gray)cuwcgB394
Csa5G602220Lsi04G005260Bottle gourd (USVL1VR-Ls)culsiB368
Csa5G602220MELO3C012013.2Melon (DHL92) v3.6.1cumedB359
Csa5G602220Cla97C05G107280Watermelon (97103) v2cuwmbB383
Csa5G602220Bhi07G001359Wax gourdcuwgoB503
Csa5G602220CSPI05G22850Wild cucumber (PI 183967)cpicuB239
Csa5G602220Cucsa.285890Cucumber (Gy14) v1cgycuB410
Csa5G602220CmaCh04G015820Cucurbita maxima (Rimu)cmacuB724
Csa5G602220CmoCh04G016540Cucurbita moschata (Rifu)cmocuB715
Csa5G602220Cp4.1LG01g04050Cucurbita pepo (Zucchini)cpecuB419
Csa5G602220Cp4.1LG01g13210Cucurbita pepo (Zucchini)cpecuB416
Csa5G602220Carg01771Silver-seed gourdcarcuB0860
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa5G602220Melon (DHL92) v3.6.1cumedB370
Csa5G602220Melon (DHL92) v3.6.1cumedB385
Csa5G602220Silver-seed gourdcarcuB0530
Csa5G602220Watermelon (97103) v2cuwmbB342
Csa5G602220Watermelon (97103) v2cuwmbB391
Csa5G602220Wax gourdcuwgoB497
Csa5G602220Wax gourdcuwgoB512
Csa5G602220Cucumber (Chinese Long) v2cucuB033
Csa5G602220Cucumber (Chinese Long) v2cucuB029
Csa5G602220Cucumber (Chinese Long) v2cucuB108
Csa5G602220Cucumber (Gy14) v1cgycuB108
Csa5G602220Cucumber (Gy14) v1cgycuB303
Csa5G602220Cucumber (Gy14) v1cgycuB483
Csa5G602220Cucurbita maxima (Rimu)cmacuB729
Csa5G602220Cucurbita maxima (Rimu)cmacuB803
Csa5G602220Cucurbita moschata (Rifu)cmocuB718
Csa5G602220Cucurbita moschata (Rifu)cmocuB793
Csa5G602220Melon (DHL92) v3.5.1cumeB386
Csa5G602220Melon (DHL92) v3.5.1cumeB392
Csa5G602220Melon (DHL92) v3.5.1cumeB400
Csa5G602220Watermelon (Charleston Gray)cuwcgB350
Csa5G602220Watermelon (Charleston Gray)cuwcgB370
Csa5G602220Watermelon (Charleston Gray)cuwcgB401
Csa5G602220Watermelon (97103) v1cuwmB374
Csa5G602220Watermelon (97103) v1cuwmB442
Csa5G602220Cucurbita pepo (Zucchini)cpecuB118
Csa5G602220Bottle gourd (USVL1VR-Ls)culsiB349
Csa5G602220Bottle gourd (USVL1VR-Ls)culsiB384
Csa5G602220Cucumber (Gy14) v2cgybcuB038
Csa5G602220Cucumber (Gy14) v2cgybcuB035
Csa5G602220Cucumber (Gy14) v2cgybcuB135
Csa5G602220Cucumber (Gy14) v2cgybcuB223