Cucsa.285890 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.285890
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionBnaC03g66030D protein
Locationscaffold02653 : 2114148 .. 2114501 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTTCTTTTAAATTACCTTTATTCTTTTGTAAACTAATTTTGTTATATCATTTTCACTCCTTATTTTAGTTGAAGAAAATGGATCAATATTATGATACTTGTGAGAGCAAAGGAATTGGGAAAGTGAGGTGGCAGAGGAGAGGGAGGCGCGGTGGACGGCACGGAGGTGGTGGTGGTGGTTCCGTCCATATGAAGATGAGAAAACTGCAGCGCCTCATCCCTGGAGGGCGGAGGCTGAAACCGGACCGGTTGTTCTTGAAAACGGCGGATTATATAATGCAATTGAGGTCTCAAGTTCATGTTTTACAAGCACTTTCCAAGATTTATGACCCTACACTTTCTAATTACTGATAT

mRNA sequence

GCTTCTTTTAAATTACCTTTATTCTTTTGTAAACTAATTTTGTTATATCATTTTCACTCCTTATTTTAGTTGAAGAAAATGGATCAATATTATGATACTTGTGAGAGCAAAGGAATTGGGAAAGTGAGGTGGCAGAGGAGAGGGAGGCGCGGTGGACGGCACGGAGGTGGTGGTGGTGGTTCCGTCCATATGAAGATGAGAAAACTGCAGCGCCTCATCCCTGGAGGGCGGAGGCTGAAACCGGACCGGTTGTTCTTGAAAACGGCGGATTATATAATGCAATTGAGGTCTCAAGTTCATGTTTTACAAGCACTTTCCAAGATTTATGACCCTACACTTTCTAATTACTGATAT

Coding sequence (CDS)

ATGGATCAATATTATGATACTTGTGAGAGCAAAGGAATTGGGAAAGTGAGGTGGCAGAGGAGAGGGAGGCGCGGTGGACGGCACGGAGGTGGTGGTGGTGGTTCCGTCCATATGAAGATGAGAAAACTGCAGCGCCTCATCCCTGGAGGGCGGAGGCTGAAACCGGACCGGTTGTTCTTGAAAACGGCGGATTATATAATGCAATTGAGGTCTCAAGTTCATGTTTTACAAGCACTTTCCAAGATTTATGACCCTACACTTTCTAATTACTGA

Protein sequence

MDQYYDTCESKGIGKVRWQRRGRRGGRHGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLFLKTADYIMQLRSQVHVLQALSKIYDPTLSNY*
Homology
[Close]
BLAST of Cucsa.285890 vs. TrEMBL
Match: A0A0A0KQB4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G602220 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 1.4e-45
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 

Query: 1  MDQYYDTCESKGIGKVRWQRRGRRGGRHGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLFL 60
          MDQYYDTCESKGIGKVRWQRRGRRGGRHGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLFL
Sbjct: 1  MDQYYDTCESKGIGKVRWQRRGRRGGRHGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLFL 60

Query: 61 KTADYIMQLRSQVHVLQALSKIYDPTLSNY 91
          KTADYIMQLRSQVHVLQALSKIYDPTLSNY
Sbjct: 61 KTADYIMQLRSQVHVLQALSKIYDPTLSNY 90

[Close]
BLAST of Cucsa.285890 vs. TrEMBL
Match: A0A0D2SJD6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G184100 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.3e-16
Identity = 45/79 (56.96%), Postives = 61/79 (77.22%), Query Frame = 1 

Query: 11 KGIGKVRWQRRGRRGGRHGGG--GGGSVHMKMRKLQRLIPGGRRLKPDRLFLKTADYIMQ 70
          K    V+W+ R RR    GGG  GG SV MK+++LQ+LIPGG+ ++PDRLFL+TADYI+ 
Sbjct: 9  KEFSMVKWRMRRRRTACSGGGSTGGRSVRMKIKRLQKLIPGGKLMQPDRLFLRTADYILH 68

Query: 71 LRSQVHVLQALSKIYDPTL 88
          LR Q+++LQALSKIY P++
Sbjct: 69 LRLQLNLLQALSKIYQPSI 87

[Close]
BLAST of Cucsa.285890 vs. TrEMBL
Match: A0A0D2UY55_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G343700 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.9e-16
Identity = 47/78 (60.26%), Postives = 58/78 (74.36%), Query Frame = 1 

Query: 11 KGIGKVRWQRRGRRG--GRHGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLFLKTADYIMQ 70
          K   + +W+RR RR   G  G  G  SV  K++KLQRLIPG + LKPDRLFL+TADYI+Q
Sbjct: 10 KEFSRAKWRRRRRRRWTGDSGDRGSRSVRTKVKKLQRLIPGAKGLKPDRLFLRTADYILQ 69

Query: 71 LRSQVHVLQALSKIYDPT 87
          LR QV++LQALSKIY P+
Sbjct: 70 LRLQVNILQALSKIYGPS 87

[Close]
BLAST of Cucsa.285890 vs. TrEMBL
Match: A0A067GSA5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g037825mg PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 6.2e-14
Identity = 44/73 (60.27%), Postives = 54/73 (73.97%), Query Frame = 1 

Query: 11 KGIGKVRWQRRGRRGGRHGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLFLKTADYIMQLR 70
          KG  KV+W+RR RR          SV MK+ KLQ+LIPGG+ L+PDRLFL+TADYI+ L 
Sbjct: 7  KGFAKVKWRRRRRRSAV--ARPSASVRMKVTKLQKLIPGGQGLQPDRLFLRTADYIVHLN 66

Query: 71 SQVHVLQALSKIY 84
           Q++VLQALSKIY
Sbjct: 67 LQLNVLQALSKIY 77

[Close]
BLAST of Cucsa.285890 vs. TrEMBL
Match: K7L9K5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G289300 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 4.0e-13
Identity = 42/74 (56.76%), Postives = 55/74 (74.32%), Query Frame = 1 

Query: 11 KGIGKVRWQRRGRRGGRHGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLFLKTADYIMQLR 70
          K + KV+W RR RR  R  G     V  +M+KLQRL+PGG  + PDRLFLKTA++I+QLR
Sbjct: 4  KDMAKVKWGRRRRRRRRQEG-----VERRMKKLQRLVPGGAGMNPDRLFLKTAEHILQLR 63

Query: 71 SQVHVLQALSKIYD 85
           Q++VLQALSKI++
Sbjct: 64 LQLNVLQALSKIFN 72

[Close]
BLAST of Cucsa.285890 vs. TAIR10
Match: AT1G23965.1 (AT1G23965.1 unknown protein)

HSP 1 Score: 67.0 bits (162), Expect = 6.8e-12
Identity = 36/68 (52.94%), Postives = 46/68 (67.65%), Query Frame = 1 

Query: 17  RWQRRGRRGGRHGGGGGGSVHMKMRKLQRLIPGGRRL-KPDRLFLKTADYIMQLRSQVHV 76
           R QR+  +     G G GS+ +KMRKL+ LIPGGRRL +PD L  KTADYIM L  ++  
Sbjct: 47  REQRKQTKKKTGRGSGSGSIQIKMRKLRVLIPGGRRLNQPDLLLTKTADYIMHLELRIRF 106

Query: 77  LQALSKIY 84
           L+A+S IY
Sbjct: 107 LKAISDIY 114

[Close]
BLAST of Cucsa.285890 vs. TAIR10
Match: AT1G70270.1 (AT1G70270.1 unknown protein)

HSP 1 Score: 52.4 bits (124), Expect = 1.7e-07
Identity = 26/66 (39.39%), Postives = 41/66 (62.12%), Query Frame = 1 

Query: 19 QRRGRRGGRHGGGGGGSVHMKMRKLQRLIPGGRRLK-PDRLFLKTADYIMQLRSQVHVLQ 78
          ++   + G   G   G + MK+R+LQ LIPGG+    PD L  KT DYI+ L+ ++  L+
Sbjct: 19 KKNNNKKGHGSGSRSGLLQMKVRRLQILIPGGQTCNHPDLLLSKTVDYIVHLKLKLRFLK 78

Query: 79 ALSKIY 84
          A+S++Y
Sbjct: 79 AISEMY 84

[Close]
BLAST of Cucsa.285890 vs. NCBI nr
Match: gi|778705118|ref|XP_011655641.1| (PREDICTED: transcription factor PAR2 [Cucumis sativus])

HSP 1 Score: 189.9 bits (481), Expect = 2.0e-45
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 

Query: 1  MDQYYDTCESKGIGKVRWQRRGRRGGRHGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLFL 60
          MDQYYDTCESKGIGKVRWQRRGRRGGRHGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLFL
Sbjct: 1  MDQYYDTCESKGIGKVRWQRRGRRGGRHGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLFL 60

Query: 61 KTADYIMQLRSQVHVLQALSKIYDPTLSNY 91
          KTADYIMQLRSQVHVLQALSKIYDPTLSNY
Sbjct: 61 KTADYIMQLRSQVHVLQALSKIYDPTLSNY 90

[Close]
BLAST of Cucsa.285890 vs. NCBI nr
Match: gi|659090850|ref|XP_008446236.1| (PREDICTED: uncharacterized protein LOC103489026 [Cucumis melo])

HSP 1 Score: 172.6 bits (436), Expect = 3.3e-40
Identity = 84/91 (92.31%), Postives = 86/91 (94.51%), Query Frame = 1 

Query: 1  MDQYYDTCESKGIGKVRWQRRGRRGGRHGGGGGG--SVHMKMRKLQRLIPGGRRLKPDRL 60
          M++YY  CES GIGKVRWQRRGRRGGRHGGGGGG  SVHMKMRKLQRLIPGGRRLKPDRL
Sbjct: 1  MERYYSICESNGIGKVRWQRRGRRGGRHGGGGGGGGSVHMKMRKLQRLIPGGRRLKPDRL 60

Query: 61 FLKTADYIMQLRSQVHVLQALSKIYDPTLSN 90
          FLKTADYIMQLRSQVHVLQALSKIYDPTLSN
Sbjct: 61 FLKTADYIMQLRSQVHVLQALSKIYDPTLSN 91

[Close]
BLAST of Cucsa.285890 vs. NCBI nr
Match: gi|802788017|ref|XP_012092068.1| (PREDICTED: transcription factor PAR1 [Jatropha curcas])

HSP 1 Score: 92.8 bits (229), Expect = 3.3e-16
Identity = 48/77 (62.34%), Postives = 58/77 (75.32%), Query Frame = 1 

Query: 9  ESKGIGKVRWQRRGRRGGRHGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLFLKTADYIMQ 68
          E +   KV+W+RR RR  R      GSV  K++KLQRLIPGG+ L+PD LFL+TADYI+Q
Sbjct: 6  ECRDFSKVKWKRRRRRAVR------GSVRSKVKKLQRLIPGGKGLQPDHLFLRTADYILQ 65

Query: 69 LRSQVHVLQALSKIYDP 86
          LR QV+VLQALSKIY P
Sbjct: 66 LRLQVNVLQALSKIYTP 76

[Close]
BLAST of Cucsa.285890 vs. NCBI nr
Match: gi|763764036|gb|KJB31290.1| (hypothetical protein B456_005G184100 [Gossypium raimondii])

HSP 1 Score: 92.8 bits (229), Expect = 3.3e-16
Identity = 45/79 (56.96%), Postives = 61/79 (77.22%), Query Frame = 1 

Query: 11 KGIGKVRWQRRGRRGGRHGGG--GGGSVHMKMRKLQRLIPGGRRLKPDRLFLKTADYIMQ 70
          K    V+W+ R RR    GGG  GG SV MK+++LQ+LIPGG+ ++PDRLFL+TADYI+ 
Sbjct: 9  KEFSMVKWRMRRRRTACSGGGSTGGRSVRMKIKRLQKLIPGGKLMQPDRLFLRTADYILH 68

Query: 71 LRSQVHVLQALSKIYDPTL 88
          LR Q+++LQALSKIY P++
Sbjct: 69 LRLQLNLLQALSKIYQPSI 87

[Close]
BLAST of Cucsa.285890 vs. NCBI nr
Match: gi|823159182|ref|XP_012479422.1| (PREDICTED: transcription factor PAR1-like [Gossypium raimondii])

HSP 1 Score: 92.8 bits (229), Expect = 3.3e-16
Identity = 45/79 (56.96%), Postives = 61/79 (77.22%), Query Frame = 1 

Query: 11 KGIGKVRWQRRGRRGGRHGGG--GGGSVHMKMRKLQRLIPGGRRLKPDRLFLKTADYIMQ 70
          K    V+W+ R RR    GGG  GG SV MK+++LQ+LIPGG+ ++PDRLFL+TADYI+ 
Sbjct: 8  KEFSMVKWRMRRRRTACSGGGSTGGRSVRMKIKRLQKLIPGGKLMQPDRLFLRTADYILH 67

Query: 71 LRSQVHVLQALSKIYDPTL 88
          LR Q+++LQALSKIY P++
Sbjct: 68 LRLQLNLLQALSKIYQPSI 86

The following BLAST results are available for this feature:
BLAST of Cucsa.285890 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQB4_CUCSA1.4e-45100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G602220 PE=4 SV=1[more]
A0A0D2SJD6_GOSRA2.3e-1656.96Uncharacterized protein OS=Gossypium raimondii GN=B456_005G184100 PE=4 SV=1[more]
A0A0D2UY55_GOSRA3.9e-1660.26Uncharacterized protein OS=Gossypium raimondii GN=B456_009G343700 PE=4 SV=1[more]
A0A067GSA5_CITSI6.2e-1460.27Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g037825mg PE=4 SV=1[more]
K7L9K5_SOYBN4.0e-1356.76Uncharacterized protein OS=Glycine max GN=GLYMA_08G289300 PE=4 SV=1[more]
BLAST of Cucsa.285890 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G23965.16.8e-1252.94 unknown protein[more]
AT1G70270.11.7e-0739.39 unknown protein[more]
BLAST of Cucsa.285890 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778705118|ref|XP_011655641.1|2.0e-45100.00PREDICTED: transcription factor PAR2 [Cucumis sativus][more]
gi|659090850|ref|XP_008446236.1|3.3e-4092.31PREDICTED: uncharacterized protein LOC103489026 [Cucumis melo][more]
gi|802788017|ref|XP_012092068.1|3.3e-1662.34PREDICTED: transcription factor PAR1 [Jatropha curcas][more]
gi|763764036|gb|KJB31290.1|3.3e-1656.96hypothetical protein B456_005G184100 [Gossypium raimondii][more]
gi|823159182|ref|XP_012479422.1|3.3e-1656.96PREDICTED: transcription factor PAR1-like [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.285890.1Cucsa.285890.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33124FAMILY NOT NAMEDcoord: 36..84
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.285890Cla010104Watermelon (97103) v1cgywmB524
Cucsa.285890Csa5G602220Cucumber (Chinese Long) v2cgycuB410
Cucsa.285890MELO3C012013Melon (DHL92) v3.5.1cgymeB474
Cucsa.285890ClCG05G025160Watermelon (Charleston Gray)cgywcgB498
Cucsa.285890CSPI05G22850Wild cucumber (PI 183967)cgycpiB432
Cucsa.285890CmaCh04G015820Cucurbita maxima (Rimu)cgycmaB0804
Cucsa.285890CmoCh04G016540Cucurbita moschata (Rifu)cgycmoB0797
Cucsa.285890Lsi04G005260Bottle gourd (USVL1VR-Ls)cgylsiB465
Cucsa.285890Cp4.1LG01g13210Cucurbita pepo (Zucchini)cgycpeB0754
Cucsa.285890Cp4.1LG01g04050Cucurbita pepo (Zucchini)cgycpeB0755
Cucsa.285890MELO3C012013.2Melon (DHL92) v3.6.1cgymedB471
Cucsa.285890CsaV3_5G031740Cucumber (Chinese Long) v3cgycucB441
Cucsa.285890Cla97C05G107280Watermelon (97103) v2cgywmbB498
Cucsa.285890Bhi07G001359Wax gourdcgywgoB584
Cucsa.285890Carg01771Silver-seed gourdcarcgyB0966
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.285890Silver-seed gourdcarcgyB0575
Cucsa.285890Cucumber (Chinese Long) v3cgycucB433
Cucsa.285890Cucumber (Chinese Long) v3cgycucB435
Cucsa.285890Cucumber (Chinese Long) v3cgycucB439
Cucsa.285890Watermelon (97103) v2cgywmbB494
Cucsa.285890Watermelon (97103) v2cgywmbB500
Cucsa.285890Wax gourdcgywgoB578
Cucsa.285890Wax gourdcgywgoB581
Cucsa.285890Cucumber (Gy14) v1cgycgyB039
Cucsa.285890Cucumber (Gy14) v1cgycgyB113
Cucsa.285890Cucumber (Gy14) v1cgycgyB138
Cucsa.285890Cucurbita maxima (Rimu)cgycmaB0808
Cucsa.285890Cucurbita maxima (Rimu)cgycmaB0787
Cucsa.285890Cucurbita maxima (Rimu)cgycmaB0798
Cucsa.285890Cucurbita maxima (Rimu)cgycmaB0805
Cucsa.285890Cucurbita moschata (Rifu)cgycmoB0798
Cucsa.285890Cucurbita moschata (Rifu)cgycmoB0801
Cucsa.285890Wild cucumber (PI 183967)cgycpiB425
Cucsa.285890Wild cucumber (PI 183967)cgycpiB427
Cucsa.285890Cucumber (Chinese Long) v2cgycuB402
Cucsa.285890Cucumber (Chinese Long) v2cgycuB404
Cucsa.285890Melon (DHL92) v3.5.1cgymeB477
Cucsa.285890Melon (DHL92) v3.5.1cgymeB478
Cucsa.285890Watermelon (Charleston Gray)cgywcgB499
Cucsa.285890Watermelon (Charleston Gray)cgywcgB495
Cucsa.285890Watermelon (97103) v1cgywmB525
Cucsa.285890Watermelon (97103) v1cgywmB530
Cucsa.285890Cucurbita pepo (Zucchini)cgycpeB0746
Cucsa.285890Bottle gourd (USVL1VR-Ls)cgylsiB459
Cucsa.285890Bottle gourd (USVL1VR-Ls)cgylsiB467
Cucsa.285890Melon (DHL92) v3.6.1cgymedB474
Cucsa.285890Melon (DHL92) v3.6.1cgymedB479