CmaCh04G002900 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G002900
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr04 : 1436501 .. 1438654 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTATTATTGGGTTTGGTGTAAGGAGAGCAAAGGAATTGGGAAGGTGAAGTGGCAGAGGAGGGGAAGGCGCGGCGTCCGGCACGGCATCCGGCACGGCGGCGCTGTGGAGAGGAGGATGAGGAGGCTGCAGCGCCTGATCCCCGGCGGGCGGGGGCTGAAGGCGGACCGTCTGTTCTTACAGACGGCGGACTATATAATGCAACTGAGATCTCAAGTGGATGTTTTGCAAGCACTTACCAACATTTATGACCCTTTACTTTCTAAATATTGATTTTTTATTTTATTTTTTTATTTTCTTGAAATCTTGTATCCAGAAAAAAGAAAAAAAAAAGATTTAATTAGCATTTTTGCCATGACCTTCCTATGACATGCATGCATACATACATACACATATATATGTAGTATGGGATGATGTATGTATGTATGTATGTATGTATGTGTAGATATCCCATGACACTATATCTACTACCAATGCCTTCTTCTCCAAGTAGCTCATTAAGATAAATTCAATTTTCGTTCAATTTTCTATTTTATTTTATATTTCATACCAACATAATTTTCGTGAATAACTGGTTGATAGTAGATAATTGGGTGAATTTTGTTAATTTCTTCGGGGATCTTCTAGCTTAAATTTGTTTAAAATTTAGTAATATGGATGCTTCAATTTCATGTCAATTTGTAAGAATGAAAAATAAATTCTCGATCATTCATGACCACTTTATCTCTAAGTTTGTTTGTTTTTTTATTGACACGATTGATCCTTGAATTACCACACAATCATAATAACTCCAAAATTAAGGATGTTTTGTTTGAAACAATTTTATATTGAGTGACGTTCTAGGAATATTCTAGTAAGCATGTGAGTAAGAATAAAATATTCTAAAAAGACGTGTTAGTTTGTAGAGATAGTCTCTACTTTTCGAAACACTTTAAAATTATTAGGTTACGTGGTCATATGCACGGGATGTAGAAAAATGTTGAAGCTATCAGGTGTTGAACCATGTTATATCTCATTCGCTAATCCATTCTCTAGAAATTATTTTTCTCGAGTTGAGCTACTCTTAGATTAGATTAGTGACTTATATCCCGAGAAGAATTGCCTCAAGAAGTCGATCATGGCTCAAAGGGTTGAGGTTGGAACTCTCCTTTGACATAATGATAAATATATGACCTATTAATTTTTTTAAAAAAATTACAAATCCAAATCAAAATGTTTAAGTGTATTATCAAATATAAAATTCAAATAATTTGACCCAAAAAAAGGGAAAAAAAATGTTCAAAATCGTTCACAACCGACCTTGTTTGGACCGATTTAATTATATTCCCAGTCTCGCCCAATTCCTATTCCAAACGGGAGCAGAATCCAATTTTAATCCACGTCGGTGGATACCCAATGCAATGTCCCAAACGGGCGACTAAACACCGACCCATCGTTCCTCCGCCTCGTAGCTGCTAACATTTTTCACATCTGGGGCTGGGGGCCTGAAGCAAAGCACTTGATTTCTGCGCCAAATTGGGCCGTTCCATCGAGGTTAAACCAATTCAAGGGCTTCAATCAGCAATCAGCAATCAGCTTCTCTTTCCTCAATGACCCATTTCTTCCCTCTTCACTTTTCCAGTTCCCATGTCGTTGTGCGAATGTTTTGGCCTTGAGCCACCACAAAATCGCTTACGACACCAGCCATTTCAAGTATATCAGCATCAGCATTTAAAACCCTCGAAGGTTGTGGTCCTCTTGAACTGAAGCAACCTCTTAGGTGTCGAAACTCTCAGAATCGTATGGCAAATGCAGTGCCAGATTCATTTCTAGTCGATTTCCCGATGACCCAGGTAGGTAAATTGCAATCAAAACCTTGCGAGAGCTCTTAATCTTTGGAATTTCAAGTTTCTGGGTTTGATTTGATAATGAATTGAAGCTTAGGCGTTCTGGGTAGTGAGAAATTTCTGTTTATAGACTAGCATTTTCATTTTTCACTGCAATTTCAGTTCAGGGTTTTGATTGTTCTTGCTTTCCCCCTTTTTTCCCTTCAAATTTTTACACATGAATTGGGTTTCTTGTCTGTGCAATATGTAACGTGTGCCAATTCCTTGTTAGCCTCAATGCAAGAGATGCTTTGGTTTCGAGGAAAACGAGGAGGAAGACGACTGA

mRNA sequence

ATGGAGTATTATTGGGTTTGGTGTAAGGAGAGCAAAGGAATTGGGAAGGTGAAGTGGCAGAGGAGGGGAAGGCGCGGCGTCCGGCACGGCATCCGGCACGGCGGCGCTGTGGAGAGGAGGATGAGGAGGCTGCAGCGCCTGATCCCCGGCGGGCGGGGGCTGAAGGCGGACCCAAAGCACTTGATTTCTGCGCCAAATTGGGCCGTTCCATCGAGGTTAAACCAATTCAAGGGCTTCAATCAGCAATCAGCAATCAGCTTCTCTTTCCTCAATGACCCATTTCTTCCCTCTTCACTTTTCCAGTTCCCATGTCGTTGTGCGAATGTTTTGGCCTTGAGCCACCACAAAATCGCTTACGACACCAGCCATTTCAAGTGTCGAAACTCTCAGAATCGTATGGCAAATGCAGTGCCAGATTCATTTCTAGTCGATTTCCCGATGACCCAGCCTCAATGCAAGAGATGCTTTGGTTTCGAGGAAAACGAGGAGGAAGACGACTGA

Coding sequence (CDS)

ATGGAGTATTATTGGGTTTGGTGTAAGGAGAGCAAAGGAATTGGGAAGGTGAAGTGGCAGAGGAGGGGAAGGCGCGGCGTCCGGCACGGCATCCGGCACGGCGGCGCTGTGGAGAGGAGGATGAGGAGGCTGCAGCGCCTGATCCCCGGCGGGCGGGGGCTGAAGGCGGACCCAAAGCACTTGATTTCTGCGCCAAATTGGGCCGTTCCATCGAGGTTAAACCAATTCAAGGGCTTCAATCAGCAATCAGCAATCAGCTTCTCTTTCCTCAATGACCCATTTCTTCCCTCTTCACTTTTCCAGTTCCCATGTCGTTGTGCGAATGTTTTGGCCTTGAGCCACCACAAAATCGCTTACGACACCAGCCATTTCAAGTGTCGAAACTCTCAGAATCGTATGGCAAATGCAGTGCCAGATTCATTTCTAGTCGATTTCCCGATGACCCAGCCTCAATGCAAGAGATGCTTTGGTTTCGAGGAAAACGAGGAGGAAGACGACTGA

Protein sequence

MEYYWVWCKESKGIGKVKWQRRGRRGVRHGIRHGGAVERRMRRLQRLIPGGRGLKADPKHLISAPNWAVPSRLNQFKGFNQQSAISFSFLNDPFLPSSLFQFPCRCANVLALSHHKIAYDTSHFKCRNSQNRMANAVPDSFLVDFPMTQPQCKRCFGFEENEEEDD
Homology
[Close]
BLAST of CmaCh04G002900 vs. TrEMBL
Match: A0A0A0KQB4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G602220 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 9.0e-11
Identity = 41/64 (64.06%), Postives = 48/64 (75.00%), Query Frame = 1 

Query: 1  MEYYWVWCKESKGIGKVKWQRRGRRGVRHGIRHGGAVERRMRRLQRLIPGGRGLKADPKH 60
          M+ Y+  C ESKGIGKV+WQRRGRRG RHG   GG+V  +MR+LQRLIPGGR LK D   
Sbjct: 1  MDQYYDTC-ESKGIGKVRWQRRGRRGGRHGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLF 60

Query: 61 LISA 65
          L +A
Sbjct: 61 LKTA 63

[Close]
BLAST of CmaCh04G002900 vs. NCBI nr
Match: gi|778705118|ref|XP_011655641.1| (PREDICTED: transcription factor PAR2 [Cucumis sativus])

HSP 1 Score: 75.1 bits (183), Expect = 1.3e-10
Identity = 41/64 (64.06%), Postives = 48/64 (75.00%), Query Frame = 1 

Query: 1  MEYYWVWCKESKGIGKVKWQRRGRRGVRHGIRHGGAVERRMRRLQRLIPGGRGLKADPKH 60
          M+ Y+  C ESKGIGKV+WQRRGRRG RHG   GG+V  +MR+LQRLIPGGR LK D   
Sbjct: 1  MDQYYDTC-ESKGIGKVRWQRRGRRGGRHGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLF 60

Query: 61 LISA 65
          L +A
Sbjct: 61 LKTA 63

[Close]
BLAST of CmaCh04G002900 vs. NCBI nr
Match: gi|659090850|ref|XP_008446236.1| (PREDICTED: uncharacterized protein LOC103489026 [Cucumis melo])

HSP 1 Score: 68.9 bits (167), Expect = 9.3e-09
Identity = 41/66 (62.12%), Postives = 47/66 (71.21%), Query Frame = 1 

Query: 1  MEYYWVWCKESKGIGKVKWQRRGRRGVRH--GIRHGGAVERRMRRLQRLIPGGRGLKADP 60
          ME Y+  C ES GIGKV+WQRRGRRG RH  G   GG+V  +MR+LQRLIPGGR LK D 
Sbjct: 1  MERYYSIC-ESNGIGKVRWQRRGRRGGRHGGGGGGGGSVHMKMRKLQRLIPGGRRLKPDR 60

Query: 61 KHLISA 65
            L +A
Sbjct: 61 LFLKTA 65

The following BLAST results are available for this feature:
BLAST of CmaCh04G002900 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh04G002900 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQB4_CUCSA9.0e-1164.06Uncharacterized protein OS=Cucumis sativus GN=Csa_5G602220 PE=4 SV=1[more]
BLAST of CmaCh04G002900 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh04G002900 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778705118|ref|XP_011655641.1|1.3e-1064.06PREDICTED: transcription factor PAR2 [Cucumis sativus][more]
gi|659090850|ref|XP_008446236.1|9.3e-0962.12PREDICTED: uncharacterized protein LOC103489026 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G002900.1CmaCh04G002900.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh04G002900Cp4.1LG01g04050Cucurbita pepo (Zucchini)cmacpeB720
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G002900Bottle gourd (USVL1VR-Ls)cmalsiB681
CmaCh04G002900Cucumber (Gy14) v2cgybcmaB653
CmaCh04G002900Melon (DHL92) v3.6.1cmamedB744
CmaCh04G002900Silver-seed gourdcarcmaB1179
CmaCh04G002900Cucumber (Chinese Long) v3cmacucB0866
CmaCh04G002900Cucumber (Chinese Long) v3cmacucB0892
CmaCh04G002900Watermelon (97103) v2cmawmbB764
CmaCh04G002900Wax gourdcmawgoB0898
CmaCh04G002900Cucurbita maxima (Rimu)cmacmaB532
CmaCh04G002900Cucumber (Gy14) v1cgycmaB0805
CmaCh04G002900Cucurbita moschata (Rifu)cmacmoB728
CmaCh04G002900Wild cucumber (PI 183967)cmacpiB736
CmaCh04G002900Wild cucumber (PI 183967)cmacpiB763
CmaCh04G002900Cucumber (Chinese Long) v2cmacuB729
CmaCh04G002900Cucumber (Chinese Long) v2cmacuB754
CmaCh04G002900Melon (DHL92) v3.5.1cmameB657
CmaCh04G002900Watermelon (Charleston Gray)cmawcgB660
CmaCh04G002900Watermelon (97103) v1cmawmB650
CmaCh04G002900Watermelon (97103) v1cmawmB704