CmaCh04G002900.1 (mRNA) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G002900.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr04 : 1436501 .. 1438654 (-)
Sequence length501
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTATTATTGGGTTTGGTGTAAGGAGAGCAAAGGAATTGGGAAGGTGAAGTGGCAGAGGAGGGGAAGGCGCGGCGTCCGGCACGGCATCCGGCACGGCGGCGCTGTGGAGAGGAGGATGAGGAGGCTGCAGCGCCTGATCCCCGGCGGGCGGGGGCTGAAGGCGGACCGTCTGTTCTTACAGACGGCGGACTATATAATGCAACTGAGATCTCAAGTGGATGTTTTGCAAGCACTTACCAACATTTATGACCCTTTACTTTCTAAATATTGATTTTTTATTTTATTTTTTTATTTTCTTGAAATCTTGTATCCAGAAAAAAGAAAAAAAAAAGATTTAATTAGCATTTTTGCCATGACCTTCCTATGACATGCATGCATACATACATACACATATATATGTAGTATGGGATGATGTATGTATGTATGTATGTATGTATGTGTAGATATCCCATGACACTATATCTACTACCAATGCCTTCTTCTCCAAGTAGCTCATTAAGATAAATTCAATTTTCGTTCAATTTTCTATTTTATTTTATATTTCATACCAACATAATTTTCGTGAATAACTGGTTGATAGTAGATAATTGGGTGAATTTTGTTAATTTCTTCGGGGATCTTCTAGCTTAAATTTGTTTAAAATTTAGTAATATGGATGCTTCAATTTCATGTCAATTTGTAAGAATGAAAAATAAATTCTCGATCATTCATGACCACTTTATCTCTAAGTTTGTTTGTTTTTTTATTGACACGATTGATCCTTGAATTACCACACAATCATAATAACTCCAAAATTAAGGATGTTTTGTTTGAAACAATTTTATATTGAGTGACGTTCTAGGAATATTCTAGTAAGCATGTGAGTAAGAATAAAATATTCTAAAAAGACGTGTTAGTTTGTAGAGATAGTCTCTACTTTTCGAAACACTTTAAAATTATTAGGTTACGTGGTCATATGCACGGGATGTAGAAAAATGTTGAAGCTATCAGGTGTTGAACCATGTTATATCTCATTCGCTAATCCATTCTCTAGAAATTATTTTTCTCGAGTTGAGCTACTCTTAGATTAGATTAGTGACTTATATCCCGAGAAGAATTGCCTCAAGAAGTCGATCATGGCTCAAAGGGTTGAGGTTGGAACTCTCCTTTGACATAATGATAAATATATGACCTATTAATTTTTTTAAAAAAATTACAAATCCAAATCAAAATGTTTAAGTGTATTATCAAATATAAAATTCAAATAATTTGACCCAAAAAAAGGGAAAAAAAATGTTCAAAATCGTTCACAACCGACCTTGTTTGGACCGATTTAATTATATTCCCAGTCTCGCCCAATTCCTATTCCAAACGGGAGCAGAATCCAATTTTAATCCACGTCGGTGGATACCCAATGCAATGTCCCAAACGGGCGACTAAACACCGACCCATCGTTCCTCCGCCTCGTAGCTGCTAACATTTTTCACATCTGGGGCTGGGGGCCTGAAGCAAAGCACTTGATTTCTGCGCCAAATTGGGCCGTTCCATCGAGGTTAAACCAATTCAAGGGCTTCAATCAGCAATCAGCAATCAGCTTCTCTTTCCTCAATGACCCATTTCTTCCCTCTTCACTTTTCCAGTTCCCATGTCGTTGTGCGAATGTTTTGGCCTTGAGCCACCACAAAATCGCTTACGACACCAGCCATTTCAAGTATATCAGCATCAGCATTTAAAACCCTCGAAGGTTGTGGTCCTCTTGAACTGAAGCAACCTCTTAGGTGTCGAAACTCTCAGAATCGTATGGCAAATGCAGTGCCAGATTCATTTCTAGTCGATTTCCCGATGACCCAGGTAGGTAAATTGCAATCAAAACCTTGCGAGAGCTCTTAATCTTTGGAATTTCAAGTTTCTGGGTTTGATTTGATAATGAATTGAAGCTTAGGCGTTCTGGGTAGTGAGAAATTTCTGTTTATAGACTAGCATTTTCATTTTTCACTGCAATTTCAGTTCAGGGTTTTGATTGTTCTTGCTTTCCCCCTTTTTTCCCTTCAAATTTTTACACATGAATTGGGTTTCTTGTCTGTGCAATATGTAACGTGTGCCAATTCCTTGTTAGCCTCAATGCAAGAGATGCTTTGGTTTCGAGGAAAACGAGGAGGAAGACGACTGA

mRNA sequence

ATGGAGTATTATTGGGTTTGGTGTAAGGAGAGCAAAGGAATTGGGAAGGTGAAGTGGCAGAGGAGGGGAAGGCGCGGCGTCCGGCACGGCATCCGGCACGGCGGCGCTGTGGAGAGGAGGATGAGGAGGCTGCAGCGCCTGATCCCCGGCGGGCGGGGGCTGAAGGCGGACCCAAAGCACTTGATTTCTGCGCCAAATTGGGCCGTTCCATCGAGGTTAAACCAATTCAAGGGCTTCAATCAGCAATCAGCAATCAGCTTCTCTTTCCTCAATGACCCATTTCTTCCCTCTTCACTTTTCCAGTTCCCATGTCGTTGTGCGAATGTTTTGGCCTTGAGCCACCACAAAATCGCTTACGACACCAGCCATTTCAAGTGTCGAAACTCTCAGAATCGTATGGCAAATGCAGTGCCAGATTCATTTCTAGTCGATTTCCCGATGACCCAGCCTCAATGCAAGAGATGCTTTGGTTTCGAGGAAAACGAGGAGGAAGACGACTGA

Coding sequence (CDS)

ATGGAGTATTATTGGGTTTGGTGTAAGGAGAGCAAAGGAATTGGGAAGGTGAAGTGGCAGAGGAGGGGAAGGCGCGGCGTCCGGCACGGCATCCGGCACGGCGGCGCTGTGGAGAGGAGGATGAGGAGGCTGCAGCGCCTGATCCCCGGCGGGCGGGGGCTGAAGGCGGACCCAAAGCACTTGATTTCTGCGCCAAATTGGGCCGTTCCATCGAGGTTAAACCAATTCAAGGGCTTCAATCAGCAATCAGCAATCAGCTTCTCTTTCCTCAATGACCCATTTCTTCCCTCTTCACTTTTCCAGTTCCCATGTCGTTGTGCGAATGTTTTGGCCTTGAGCCACCACAAAATCGCTTACGACACCAGCCATTTCAAGTGTCGAAACTCTCAGAATCGTATGGCAAATGCAGTGCCAGATTCATTTCTAGTCGATTTCCCGATGACCCAGCCTCAATGCAAGAGATGCTTTGGTTTCGAGGAAAACGAGGAGGAAGACGACTGA

Protein sequence

MEYYWVWCKESKGIGKVKWQRRGRRGVRHGIRHGGAVERRMRRLQRLIPGGRGLKADPKHLISAPNWAVPSRLNQFKGFNQQSAISFSFLNDPFLPSSLFQFPCRCANVLALSHHKIAYDTSHFKCRNSQNRMANAVPDSFLVDFPMTQPQCKRCFGFEENEEEDD
Homology
[Close]
BLAST of CmaCh04G002900.1 vs. TrEMBL
Match: A0A0A0KQB4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G602220 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 9.0e-11
Identity = 41/64 (64.06%), Postives = 48/64 (75.00%), Query Frame = 1 

Query: 1  MEYYWVWCKESKGIGKVKWQRRGRRGVRHGIRHGGAVERRMRRLQRLIPGGRGLKADPKH 60
          M+ Y+  C ESKGIGKV+WQRRGRRG RHG   GG+V  +MR+LQRLIPGGR LK D   
Sbjct: 1  MDQYYDTC-ESKGIGKVRWQRRGRRGGRHGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLF 60

Query: 61 LISA 65
          L +A
Sbjct: 61 LKTA 63

[Close]
BLAST of CmaCh04G002900.1 vs. NCBI nr
Match: gi|778705118|ref|XP_011655641.1| (PREDICTED: transcription factor PAR2 [Cucumis sativus])

HSP 1 Score: 75.1 bits (183), Expect = 1.3e-10
Identity = 41/64 (64.06%), Postives = 48/64 (75.00%), Query Frame = 1 

Query: 1  MEYYWVWCKESKGIGKVKWQRRGRRGVRHGIRHGGAVERRMRRLQRLIPGGRGLKADPKH 60
          M+ Y+  C ESKGIGKV+WQRRGRRG RHG   GG+V  +MR+LQRLIPGGR LK D   
Sbjct: 1  MDQYYDTC-ESKGIGKVRWQRRGRRGGRHGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLF 60

Query: 61 LISA 65
          L +A
Sbjct: 61 LKTA 63

[Close]
BLAST of CmaCh04G002900.1 vs. NCBI nr
Match: gi|659090850|ref|XP_008446236.1| (PREDICTED: uncharacterized protein LOC103489026 [Cucumis melo])

HSP 1 Score: 68.9 bits (167), Expect = 9.3e-09
Identity = 41/66 (62.12%), Postives = 47/66 (71.21%), Query Frame = 1 

Query: 1  MEYYWVWCKESKGIGKVKWQRRGRRGVRH--GIRHGGAVERRMRRLQRLIPGGRGLKADP 60
          ME Y+  C ES GIGKV+WQRRGRRG RH  G   GG+V  +MR+LQRLIPGGR LK D 
Sbjct: 1  MERYYSIC-ESNGIGKVRWQRRGRRGGRHGGGGGGGGSVHMKMRKLQRLIPGGRRLKPDR 60

Query: 61 KHLISA 65
            L +A
Sbjct: 61 LFLKTA 65

The following BLAST results are available for this feature:
BLAST of CmaCh04G002900.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh04G002900.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQB4_CUCSA9.0e-1164.06Uncharacterized protein OS=Cucumis sativus GN=Csa_5G602220 PE=4 SV=1[more]
BLAST of CmaCh04G002900.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh04G002900.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778705118|ref|XP_011655641.1|1.3e-1064.06PREDICTED: transcription factor PAR2 [Cucumis sativus][more]
gi|659090850|ref|XP_008446236.1|9.3e-0962.12PREDICTED: uncharacterized protein LOC103489026 [Cucumis melo][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh04G002900CmaCh04G002900gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh04G002900.1CmaCh04G002900.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh04G002900.1.CDS.4CmaCh04G002900.1.CDS.4CDS
CmaCh04G002900.1.CDS.3CmaCh04G002900.1.CDS.3CDS
CmaCh04G002900.1.CDS.2CmaCh04G002900.1.CDS.2CDS
CmaCh04G002900.1.CDS.1CmaCh04G002900.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh04G002900.1.exon.4CmaCh04G002900.1.exon.4exon
CmaCh04G002900.1.exon.3CmaCh04G002900.1.exon.3exon
CmaCh04G002900.1.exon.2CmaCh04G002900.1.exon.2exon
CmaCh04G002900.1.exon.1CmaCh04G002900.1.exon.1exon