Cp4.1LG01g03260 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g03260
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionDNA-directed RNA polymerase subunit beta
LocationCp4.1LG01 : 1917361 .. 1919047 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTCTACCACGGTTTCTTCGCCCATTGAAATCGCGACATCAATCCGAAACTCCACCAAATTCCGCCAGTTTTTTCTCCCTTGAGTCTCGAGGTAGGCCATCGGCGGCGGCGGAGATGGAGAATAAGGCTCTGGTTGTGTACACTGTGGTCGTTTTTTTGGGGCTTTTGGTGATCGCCACTGGCTTCGCCGCTGAGGGCACCAAAGTTAAGGTGAAGATGCTTTTTCTTACTCATGATTTATTGATTGCGTGATTTTTTCTTTCGTGGATTTTCTGTTTGGTTGATGAGAAAATCCGTCGAAAAGAAAGTTATGGAATAGTATTGAAGGGGAGTTTTAATGTTCTGATTTGGAAATTATATATGAAAAAGCTGTTCGTGAATTTAAAACTTAGATTGGATTGAAACTGTTTGCCCTACTGAATGGATCTTCTTTTTCTTTTGTGTAATAATTAAGAAATACCGATCTGAATCAGATGAAATCGGCATTTTATTTCCTATGGCAAATGATAGCAGAGAAGATAGATCTGACCTTTAAACTTTCTCAAACGATTCTTGAGGCTGCGGCCATAAACTTCCAATTAGAGTCGGTTTGATAGCAATTTTGTTCTGGTTTTCAAGAGGTTATGCAATGTACTCATAGTTTCTTTTGTTTGTGCTATGCGTTTTTTAATTTGGGTTGAAATTTACATAACTTCTGATTTTCTCCCTAAAATTTCGAACAGTTTCTTCTTAATCACTCAAGAGTTTTAATGAGTAACCGCTTCAATTCATGTAACAACAAATCAGAAACAGGTTTTGATAACATTTTTATATCCAATCGATACAGTTTTGAAAATCGTGCTTAATTTCTTTTAATTTTCTTAGAATAGTTTTGAACTTCTCTTAAGTACATATAAATTCTTAGCTGAATTCTTCTTGTCGATTAGTAGAAGAGGAACTTGCATTTTAAATAAAGTTTGTATGCAAATCATTAGAAGTTTGACTAGTTGTTCTCTTCATTTGACAGCTTAATCATGTTATTGTAGTCAATCGTACTACGTGCAAATATCCCAAAAGTCCAGCGGTGGGCCTTGGTTTGGTTGCAGCTCTATCACTCTTGCTTGCTCATATAACGTTAAATTTTGCAACCGGGTGCTTTTGCTGCTTTGCGGCCCCTCGCTCTTCTATTTCTAAATGGCGAATAGCCCTGATCTGCTACGTCATTTCCTGGTACTCTTCACTTATTTGTAGCATTTTTTCCTTACCCTTTTCTTGGACCAACAACATTAGTTTAATTTCATGTGCAGGATTACATTTGCGAAAGCGTTCATTATGTTGCTCACCGGTGCTGCACTGAACGACCAACGGGGCGAACAAAGCTACTTTTTAGGCTATTGCTATGTCCTGAGATCAGGATTTTTTATTATGGCTACCATTGTGGCCACGGTGAGCATAGTGCTGGGATTGGCCTATTACATTCTATTGAACTCAACAGAGACTGAGCCTTCTGTGTTTGGTAATCCCTGCATTCCTCCTCAAGCAAACATTGCAATGGGGCAGCCCCAATTCCCTCCCCCTCCACACAGATCTGCTGACCCCGTATTCGTCCCCGAAGACACGTACATGAGACGACAATTCACGTGATCGTTAATCGATAAATGTAGGTCGATACCGAACGCGTTTAACAAAACTATGTAACTCAGACCAC

mRNA sequence

TCTCTACCACGGTTTCTTCGCCCATTGAAATCGCGACATCAATCCGAAACTCCACCAAATTCCGCCAGTTTTTTCTCCCTTGAGTCTCGAGGTAGGCCATCGGCGGCGGCGGAGATGGAGAATAAGGCTCTGGTTGTGTACACTGTGGTCGTTTTTTTGGGGCTTTTGGTGATCGCCACTGGCTTCGCCGCTGAGGGCACCAAAGTTAAGCTTAATCATGTTATTGTAGTCAATCGTACTACGTGCAAATATCCCAAAAGTCCAGCGGTGGGCCTTGGTTTGGTTGCAGCTCTATCACTCTTGCTTGCTCATATAACGTTAAATTTTGCAACCGGGTGCTTTTGCTGCTTTGCGGCCCCTCGCTCTTCTATTTCTAAATGGCGAATAGCCCTGATCTGCTACGTCATTTCCTGGATTACATTTGCGAAAGCGTTCATTATGTTGCTCACCGGTGCTGCACTGAACGACCAACGGGGCGAACAAAGCTACTTTTTAGGCTATTGCTATGTCCTGAGATCAGGATTTTTTATTATGGCTACCATTGTGGCCACGGTGAGCATAGTGCTGGGATTGGCCTATTACATTCTATTGAACTCAACAGAGACTGAGCCTTCTGTGTTTGGTAATCCCTGCATTCCTCCTCAAGCAAACATTGCAATGGGGCAGCCCCAATTCCCTCCCCCTCCACACAGATCTGCTGACCCCGTATTCGTCCCCGAAGACACGTACATGAGACGACAATTCACGTGATCGTTAATCGATAAATGTAGGTCGATACCGAACGCGTTTAACAAAACTATGTAACTCAGACCAC

Coding sequence (CDS)

ATGGAGAATAAGGCTCTGGTTGTGTACACTGTGGTCGTTTTTTTGGGGCTTTTGGTGATCGCCACTGGCTTCGCCGCTGAGGGCACCAAAGTTAAGCTTAATCATGTTATTGTAGTCAATCGTACTACGTGCAAATATCCCAAAAGTCCAGCGGTGGGCCTTGGTTTGGTTGCAGCTCTATCACTCTTGCTTGCTCATATAACGTTAAATTTTGCAACCGGGTGCTTTTGCTGCTTTGCGGCCCCTCGCTCTTCTATTTCTAAATGGCGAATAGCCCTGATCTGCTACGTCATTTCCTGGATTACATTTGCGAAAGCGTTCATTATGTTGCTCACCGGTGCTGCACTGAACGACCAACGGGGCGAACAAAGCTACTTTTTAGGCTATTGCTATGTCCTGAGATCAGGATTTTTTATTATGGCTACCATTGTGGCCACGGTGAGCATAGTGCTGGGATTGGCCTATTACATTCTATTGAACTCAACAGAGACTGAGCCTTCTGTGTTTGGTAATCCCTGCATTCCTCCTCAAGCAAACATTGCAATGGGGCAGCCCCAATTCCCTCCCCCTCCACACAGATCTGCTGACCCCGTATTCGTCCCCGAAGACACGTACATGAGACGACAATTCACGTGA

Protein sequence

MENKALVVYTVVVFLGLLVIATGFAAEGTKVKLNHVIVVNRTTCKYPKSPAVGLGLVAALSLLLAHITLNFATGCFCCFAAPRSSISKWRIALICYVISWITFAKAFIMLLTGAALNDQRGEQSYFLGYCYVLRSGFFIMATIVATVSIVLGLAYYILLNSTETEPSVFGNPCIPPQANIAMGQPQFPPPPHRSADPVFVPEDTYMRRQFT
Homology
[Close]
BLAST of Cp4.1LG01g03260 vs. TrEMBL
Match: A0A0A0KU80_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G025740 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.9e-61
Identity = 131/218 (60.09%), Postives = 161/218 (73.85%), Query Frame = 1 

Query: 1   MENK-ALVVYTVVVFLGLLVIATGFAAEGTKVKLNHVIVVNRTTCKYPKSPAVGLGLVAA 60
           ME K AL+V  VV  LG+++IATGFAAE T+ K N V  V    CKYP+SPA+GLGL AA
Sbjct: 1   MERKSALMVKYVVAILGIVMIATGFAAEATRTKRNQVTKVAPDLCKYPRSPALGLGLTAA 60

Query: 61  LSLLLAHITLNFATGCFCCFAAPRSSISKWRIALICYVISWITFAKAFIMLLTGAALNDQ 120
           LSLL A IT+  +TGC CC   PR   SKWR A+IC+ ISW+T+  AF++ LTGAALN+ 
Sbjct: 61  LSLLFAQITIKASTGCVCCIRGPRPPASKWRTAVICFTISWVTYVIAFLLFLTGAALNNG 120

Query: 121 RGEQ-SYFLGY-CYVLRSGFFIMATIVATVSIVLGLAYYILLNSTETEPS-VFGNPCIPP 180
           RGEQ +YF  Y CYVL+ G F  ATIV   S+ LG++Y+++LNS + +PS V+G+P +PP
Sbjct: 121 RGEQRNYFRDYDCYVLKPGVFSFATIVGMASLTLGMSYFLILNSAKNDPSTVWGHPSVPP 180

Query: 181 QANIAMGQPQF---PPPPHRSADPVFVPEDTYMRRQFT 212
           Q NIAM QPQF   PPPP R+ADPVFV EDTYMRRQFT
Sbjct: 181 QPNIAMAQPQFPNPPPPPQRTADPVFVHEDTYMRRQFT 218

[Close]
BLAST of Cp4.1LG01g03260 vs. TrEMBL
Match: A0A067EBD4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028344mg PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 2.0e-55
Identity = 114/213 (53.52%), Postives = 149/213 (69.95%), Query Frame = 1 

Query: 1   MENKALVVYTVVVFLGLLVIATGFAAEGTKVKLNHVIVVNRTTCKYPKSPAVGLGLVAAL 60
           ME K L + + V  LGLL  ATGF AE T++K + V + + T C YP+SPA+GLGL AAL
Sbjct: 1   MERKVLALCSTVGLLGLLSAATGFGAEATRIKGSQVQITSPTQCSYPRSPALGLGLTAAL 60

Query: 61  SLLLAHITLNFATGCFCCFAAPRSSISKWRIALICYVISWITFAKAFIMLLTGAALNDQR 120
           SLL+A +T+N ATGC CC   P  S S W IAL+C+V+SW TF  AF++LLTGAALNDQ 
Sbjct: 61  SLLIAQVTINVATGCICCRRGPHPSNSNWTIALVCFVVSWFTFVIAFLLLLTGAALNDQH 120

Query: 121 GEQSYFLG--YCYVLRSGFFIMATIVATVSIVLGLAYYILLNSTETEPSVFGNPCIPPQA 180
           GE+S + G  YCYV++ G F    +++  S+ LG+ YY+ L+S +    ++GN  +P + 
Sbjct: 121 GEESMYFGNYYCYVVKPGVFAGGAVLSLASVTLGILYYLTLHSAKNS-GLWGNSSVPQEG 180

Query: 181 NIAMGQPQFPPPPHRSADPVFVPEDTYMRRQFT 212
            IAMGQPQF  PP R+ +PVFV EDTYMRRQFT
Sbjct: 181 GIAMGQPQF--PPQRTQEPVFVHEDTYMRRQFT 210

[Close]
BLAST of Cp4.1LG01g03260 vs. TrEMBL
Match: A0A0B0MRY5_GOSAR (DNA-directed RNA polymerase subunit beta OS=Gossypium arboreum GN=F383_26197 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 7.1e-53
Identity = 117/214 (54.67%), Postives = 145/214 (67.76%), Query Frame = 1 

Query: 1   MENKALVVYTVVVFLGLLVIATGFAAEGTKVKLNHVIVVNRTTCKYPKSPAVGLGLVAAL 60
           ME K LV+ +VV FLG+L  ATGFAAE T++K + V  V+ T C YP+SPA+GLGL AA 
Sbjct: 1   MERKGLVLCSVVAFLGVLSAATGFAAEATRIKASEVKFVSTTQCSYPRSPALGLGLTAAA 60

Query: 61  SLLLAHITLNFATGCFCCFAAPRSSISKWRIALICYVISWITFAKAFIMLLTGAALNDQR 120
           +LL+AHI +N  TGC CC    RS  S W  AL+ YVISW TF  AF++LLTG+ALNDQ 
Sbjct: 61  ALLVAHIIINIPTGCICCKRTSRSWNSYWTKALVFYVISWFTFVIAFLLLLTGSALNDQH 120

Query: 121 GEQSYFLG--YCYVLRSGFFIMATIVATVSIVLGLAYYILLNSTETEPSVFGNPCIPPQ- 180
           GE+S + G  YCYV++ G F    I+A  S+V G+ YY+ LN+ +     +GN  +P Q 
Sbjct: 121 GEESVYFGNYYCYVVKPGVFAGGAILAIASVVFGIFYYLTLNTAKNTSEPWGNSAVPNQG 180

Query: 181 ANIAMGQPQFPPPPHRSADPVFVPEDTYMRRQFT 212
             IAMGQPQF  P   S DPVFV EDTY RRQFT
Sbjct: 181 GGIAMGQPQF--PTQTSQDPVFVHEDTYNRRQFT 212

[Close]
BLAST of Cp4.1LG01g03260 vs. TrEMBL
Match: A0A0D2QFW5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G051400 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 9.2e-53
Identity = 116/214 (54.21%), Postives = 145/214 (67.76%), Query Frame = 1 

Query: 1   MENKALVVYTVVVFLGLLVIATGFAAEGTKVKLNHVIVVNRTTCKYPKSPAVGLGLVAAL 60
           ME K LV+ +VV FLG+L  ATGFAAE T++K + V  V+ T C YP+SPA+GLGL AA 
Sbjct: 1   MERKGLVLCSVVAFLGVLSAATGFAAEATRIKASEVKFVSTTQCSYPRSPALGLGLTAAA 60

Query: 61  SLLLAHITLNFATGCFCCFAAPRSSISKWRIALICYVISWITFAKAFIMLLTGAALNDQR 120
           +LL+AHI +N  TGC CC    RS  S W  AL+ YVISW TF  AF++LLTG+ALNDQ 
Sbjct: 61  ALLVAHIIINIPTGCICCKRTSRSWNSYWTKALVFYVISWFTFVIAFLLLLTGSALNDQH 120

Query: 121 GEQSYFLG--YCYVLRSGFFIMATIVATVSIVLGLAYYILLNSTETEPSVFGNPCIPPQ- 180
           GE+S + G  YCYV++ G F    ++A  S+V G+ YY+ LN+ +     +GN  +P Q 
Sbjct: 121 GEESVYFGNYYCYVVKPGVFAGGAVLAIASVVFGIFYYLTLNTAKNTSDPWGNSAVPNQG 180

Query: 181 ANIAMGQPQFPPPPHRSADPVFVPEDTYMRRQFT 212
             IAMGQPQF  P   S DPVFV EDTY RRQFT
Sbjct: 181 GGIAMGQPQF--PTQTSQDPVFVHEDTYNRRQFT 212

[Close]
BLAST of Cp4.1LG01g03260 vs. TrEMBL
Match: A0A061EZX5_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_025365 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 2.7e-52
Identity = 110/213 (51.64%), Postives = 147/213 (69.01%), Query Frame = 1 

Query: 1   MENKALVVYTVVVFLGLLVIATGFAAEGTKVKLNHVIVVNRTTCKYPKSPAVGLGLVAAL 60
           ME KA+V+  VV FLG+L   TGFAAE T+++ + V  ++ T C+YP+SPA+GLGL AA+
Sbjct: 1   MERKAIVLCNVVGFLGILSAVTGFAAEATRIQASQVKFISPTQCQYPRSPALGLGLTAAV 60

Query: 61  SLLLAHITLNFATGCFCCFAAPRSSISKWRIALICYVISWITFAKAFIMLLTGAALNDQR 120
           +LL+A I +N ATGC CC    ++  S W  AL+ YV+SW TF  AF++LLTG+ALNDQ 
Sbjct: 61  ALLIAQIIINSATGCICCKRTRQTWNSNWTKALVFYVVSWFTFVIAFLLLLTGSALNDQH 120

Query: 121 GEQSYFLG--YCYVLRSGFFIMATIVATVSIVLGLAYYILLNSTETEPSVFGNPCIPPQA 180
           GE+S + G  YCYV++ G F    ++A  S+ LG+ YY+ +N  +     +GN  +P Q 
Sbjct: 121 GEESVYFGNYYCYVVKPGVFAGGAVLALASVTLGIFYYLTVNMAKDSTGPWGNAPVPNQG 180

Query: 181 NIAMGQPQFPPPPHRSADPVFVPEDTYMRRQFT 212
            IAMGQPQF  PP  S DPVFV EDTY+RRQFT
Sbjct: 181 GIAMGQPQF--PPQSSQDPVFVHEDTYIRRQFT 211

[Close]
BLAST of Cp4.1LG01g03260 vs. TAIR10
Match: AT5G17210.1 (AT5G17210.1 Protein of unknown function (DUF1218))

HSP 1 Score: 171.4 bits (433), Expect = 5.9e-43
Identity = 97/216 (44.91%), Postives = 133/216 (61.57%), Query Frame = 1 

Query: 1   MENKALVVYTVVVFLGLLVIATGFAAEGTKVKLNHVIVV---NRTTCKYPKSPAVGLGLV 60
           ME + +V+  V+  LGLL   T F AE T++K + V V    + T C YP+SPA  LG  
Sbjct: 1   MERRKIVMCGVLFLLGLLSAVTAFVAEATRIKRSQVTVTVSDSITKCTYPRSPAFNLGFT 60

Query: 61  AALSLLLAHITLNFATGCFCCFAAPRSSISKWRIALICYVISWITFAKAFIMLLTGAALN 120
           +AL L++A I ++ ++GCFCC   P  S S W I+LIC+V+SW TF  AF++LL+GAALN
Sbjct: 61  SALFLMMAQIIVSVSSGCFCCRKGPAPSRSNWIISLICFVVSWFTFVIAFLVLLSGAALN 120

Query: 121 DQRGEQSYFLG--YCYVLRSGFFIMATIVATVSIVLGLAYYILLNSTETEPSVFGNPCIP 180
           D+  E+S   G  +CY+++ G F    +++ V+I LG+ YY+ L S +   +        
Sbjct: 121 DEHTEESMNAGTYFCYIVKPGVFSTGAVLSLVTIALGIVYYLCLTSNKQIVAA----TTT 180

Query: 181 PQANIAMGQPQFPPPPHRSADPVFVPEDTYMRRQFT 212
               IAMGQPQ    P R  DPVFV EDTYMRRQFT
Sbjct: 181 QGTGIAMGQPQI---PERVEDPVFVHEDTYMRRQFT 209

[Close]
BLAST of Cp4.1LG01g03260 vs. NCBI nr
Match: gi|449458299|ref|XP_004146885.1| (PREDICTED: uncharacterized protein LOC101221478 [Cucumis sativus])

HSP 1 Score: 243.8 bits (621), Expect = 2.7e-61
Identity = 131/218 (60.09%), Postives = 161/218 (73.85%), Query Frame = 1 

Query: 1   MENK-ALVVYTVVVFLGLLVIATGFAAEGTKVKLNHVIVVNRTTCKYPKSPAVGLGLVAA 60
           ME K AL+V  VV  LG+++IATGFAAE T+ K N V  V    CKYP+SPA+GLGL AA
Sbjct: 1   MERKSALMVKYVVAILGIVMIATGFAAEATRTKRNQVTKVAPDLCKYPRSPALGLGLTAA 60

Query: 61  LSLLLAHITLNFATGCFCCFAAPRSSISKWRIALICYVISWITFAKAFIMLLTGAALNDQ 120
           LSLL A IT+  +TGC CC   PR   SKWR A+IC+ ISW+T+  AF++ LTGAALN+ 
Sbjct: 61  LSLLFAQITIKASTGCVCCIRGPRPPASKWRTAVICFTISWVTYVIAFLLFLTGAALNNG 120

Query: 121 RGEQ-SYFLGY-CYVLRSGFFIMATIVATVSIVLGLAYYILLNSTETEPS-VFGNPCIPP 180
           RGEQ +YF  Y CYVL+ G F  ATIV   S+ LG++Y+++LNS + +PS V+G+P +PP
Sbjct: 121 RGEQRNYFRDYDCYVLKPGVFSFATIVGMASLTLGMSYFLILNSAKNDPSTVWGHPSVPP 180

Query: 181 QANIAMGQPQF---PPPPHRSADPVFVPEDTYMRRQFT 212
           Q NIAM QPQF   PPPP R+ADPVFV EDTYMRRQFT
Sbjct: 181 QPNIAMAQPQFPNPPPPPQRTADPVFVHEDTYMRRQFT 218

[Close]
BLAST of Cp4.1LG01g03260 vs. NCBI nr
Match: gi|659107725|ref|XP_008453825.1| (PREDICTED: uncharacterized protein LOC103494435 [Cucumis melo])

HSP 1 Score: 231.1 bits (588), Expect = 1.8e-57
Identity = 126/220 (57.27%), Postives = 156/220 (70.91%), Query Frame = 1 

Query: 1   MENKA-LVVYTVVVFLGLLVIATGFAAEGTKVKLNHVIVVNRTTCKYPKSPAVGLGLVAA 60
           ME KA LVV  VV FLG+++IATGFAAE T+ K   V  V    CKYP+SPA+GLG  AA
Sbjct: 1   MERKAALVVKFVVAFLGIVMIATGFAAEATRTKGKQVTRVAPDVCKYPRSPAMGLGFTAA 60

Query: 61  LSLLLAHITLNFATGCFCCFAAPRSSISKWRIALICYVISWITFAKAFIMLLTGAALNDQ 120
           LSLL A IT+  +TGC CC   PR    KWR A+IC+ +SWIT+  AF++ LTGAALN+ 
Sbjct: 61  LSLLFAQITIKASTGCVCCIRGPRP--PKWRTAVICFTVSWITYVIAFLLFLTGAALNNG 120

Query: 121 RGEQSYFLG--YCYVLRSGFFIMATIVATVSIVLGLAYYILLNSTETEPS-VFGNPCIPP 180
           R +Q  +LG   CYVL+ G F  ATIV   S+ LG++Y+++LNS + +PS V+G+P +PP
Sbjct: 121 RDQQRNYLGNYECYVLKPGVFSFATIVGVASLTLGMSYFLILNSAKNDPSTVWGHPSVPP 180

Query: 181 QANIAMGQPQF-----PPPPHRSADPVFVPEDTYMRRQFT 212
           Q NIAM QPQF     PPPP R+ DPVFV EDTYMRRQFT
Sbjct: 181 QPNIAMAQPQFPNPPPPPPPQRTTDPVFVHEDTYMRRQFT 218

[Close]
BLAST of Cp4.1LG01g03260 vs. NCBI nr
Match: gi|641833512|gb|KDO52524.1| (hypothetical protein CISIN_1g028344mg [Citrus sinensis])

HSP 1 Score: 223.8 bits (569), Expect = 2.9e-55
Identity = 114/213 (53.52%), Postives = 149/213 (69.95%), Query Frame = 1 

Query: 1   MENKALVVYTVVVFLGLLVIATGFAAEGTKVKLNHVIVVNRTTCKYPKSPAVGLGLVAAL 60
           ME K L + + V  LGLL  ATGF AE T++K + V + + T C YP+SPA+GLGL AAL
Sbjct: 1   MERKVLALCSTVGLLGLLSAATGFGAEATRIKGSQVQITSPTQCSYPRSPALGLGLTAAL 60

Query: 61  SLLLAHITLNFATGCFCCFAAPRSSISKWRIALICYVISWITFAKAFIMLLTGAALNDQR 120
           SLL+A +T+N ATGC CC   P  S S W IAL+C+V+SW TF  AF++LLTGAALNDQ 
Sbjct: 61  SLLIAQVTINVATGCICCRRGPHPSNSNWTIALVCFVVSWFTFVIAFLLLLTGAALNDQH 120

Query: 121 GEQSYFLG--YCYVLRSGFFIMATIVATVSIVLGLAYYILLNSTETEPSVFGNPCIPPQA 180
           GE+S + G  YCYV++ G F    +++  S+ LG+ YY+ L+S +    ++GN  +P + 
Sbjct: 121 GEESMYFGNYYCYVVKPGVFAGGAVLSLASVTLGILYYLTLHSAKNS-GLWGNSSVPQEG 180

Query: 181 NIAMGQPQFPPPPHRSADPVFVPEDTYMRRQFT 212
            IAMGQPQF  PP R+ +PVFV EDTYMRRQFT
Sbjct: 181 GIAMGQPQF--PPQRTQEPVFVHEDTYMRRQFT 210

[Close]
BLAST of Cp4.1LG01g03260 vs. NCBI nr
Match: gi|568877605|ref|XP_006491818.1| (PREDICTED: uncharacterized protein LOC102608001 [Citrus sinensis])

HSP 1 Score: 222.2 bits (565), Expect = 8.3e-55
Identity = 113/213 (53.05%), Postives = 149/213 (69.95%), Query Frame = 1 

Query: 1   MENKALVVYTVVVFLGLLVIATGFAAEGTKVKLNHVIVVNRTTCKYPKSPAVGLGLVAAL 60
           ME K L + + V  LGLL  ATGF AE T++K + V + + T C YP+SPA+GLGL AAL
Sbjct: 1   MERKVLALCSTVGLLGLLSAATGFGAEATRIKGSQVQITSPTQCSYPRSPALGLGLTAAL 60

Query: 61  SLLLAHITLNFATGCFCCFAAPRSSISKWRIALICYVISWITFAKAFIMLLTGAALNDQR 120
           SLL+A +T+N ATGC CC   P  S S W IAL+C+V+SW TF  AF++LLTGAALNDQ 
Sbjct: 61  SLLIAQVTINVATGCICCRRGPHPSNSNWTIALVCFVVSWFTFVIAFLLLLTGAALNDQH 120

Query: 121 GEQSYFLG--YCYVLRSGFFIMATIVATVSIVLGLAYYILLNSTETEPSVFGNPCIPPQA 180
           GE+S + G  YCYV++ G F    +++  S+ LG+ YY+ L+S +    ++GN  +P + 
Sbjct: 121 GEESMYFGNYYCYVVKPGVFAGGAVLSLASVTLGILYYLTLHSAKNS-GLWGNSSVPQEG 180

Query: 181 NIAMGQPQFPPPPHRSADPVFVPEDTYMRRQFT 212
            IAMGQPQF  PP R+ +PVFV EDT+MRRQFT
Sbjct: 181 GIAMGQPQF--PPQRTQEPVFVHEDTFMRRQFT 210

[Close]
BLAST of Cp4.1LG01g03260 vs. NCBI nr
Match: gi|728816797|gb|KHG02244.1| (DNA-directed RNA polymerase subunit beta [Gossypium arboreum])

HSP 1 Score: 215.3 bits (547), Expect = 1.0e-52
Identity = 117/214 (54.67%), Postives = 145/214 (67.76%), Query Frame = 1 

Query: 1   MENKALVVYTVVVFLGLLVIATGFAAEGTKVKLNHVIVVNRTTCKYPKSPAVGLGLVAAL 60
           ME K LV+ +VV FLG+L  ATGFAAE T++K + V  V+ T C YP+SPA+GLGL AA 
Sbjct: 1   MERKGLVLCSVVAFLGVLSAATGFAAEATRIKASEVKFVSTTQCSYPRSPALGLGLTAAA 60

Query: 61  SLLLAHITLNFATGCFCCFAAPRSSISKWRIALICYVISWITFAKAFIMLLTGAALNDQR 120
           +LL+AHI +N  TGC CC    RS  S W  AL+ YVISW TF  AF++LLTG+ALNDQ 
Sbjct: 61  ALLVAHIIINIPTGCICCKRTSRSWNSYWTKALVFYVISWFTFVIAFLLLLTGSALNDQH 120

Query: 121 GEQSYFLG--YCYVLRSGFFIMATIVATVSIVLGLAYYILLNSTETEPSVFGNPCIPPQ- 180
           GE+S + G  YCYV++ G F    I+A  S+V G+ YY+ LN+ +     +GN  +P Q 
Sbjct: 121 GEESVYFGNYYCYVVKPGVFAGGAILAIASVVFGIFYYLTLNTAKNTSEPWGNSAVPNQG 180

Query: 181 ANIAMGQPQFPPPPHRSADPVFVPEDTYMRRQFT 212
             IAMGQPQF  P   S DPVFV EDTY RRQFT
Sbjct: 181 GGIAMGQPQF--PTQTSQDPVFVHEDTYNRRQFT 212

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g03260 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g03260 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KU80_CUCSA1.9e-6160.09Uncharacterized protein OS=Cucumis sativus GN=Csa_4G025740 PE=4 SV=1[more]
A0A067EBD4_CITSI2.0e-5553.52Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028344mg PE=4 SV=1[more]
A0A0B0MRY5_GOSAR7.1e-5354.67DNA-directed RNA polymerase subunit beta OS=Gossypium arboreum GN=F383_26197 PE=... [more]
A0A0D2QFW5_GOSRA9.2e-5354.21Uncharacterized protein OS=Gossypium raimondii GN=B456_003G051400 PE=4 SV=1[more]
A0A061EZX5_THECC2.7e-5251.64Uncharacterized protein OS=Theobroma cacao GN=TCM_025365 PE=4 SV=1[more]
BLAST of Cp4.1LG01g03260 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G17210.15.9e-4344.91 Protein of unknown function (DUF1218)[more]
BLAST of Cp4.1LG01g03260 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449458299|ref|XP_004146885.1|2.7e-6160.09PREDICTED: uncharacterized protein LOC101221478 [Cucumis sativus][more]
gi|659107725|ref|XP_008453825.1|1.8e-5757.27PREDICTED: uncharacterized protein LOC103494435 [Cucumis melo][more]
gi|641833512|gb|KDO52524.1|2.9e-5553.52hypothetical protein CISIN_1g028344mg [Citrus sinensis][more]
gi|568877605|ref|XP_006491818.1|8.3e-5553.05PREDICTED: uncharacterized protein LOC102608001 [Citrus sinensis][more]
gi|728816797|gb|KHG02244.1|1.0e-5254.67DNA-directed RNA polymerase subunit beta [Gossypium arboreum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009606DUF1218
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g03260.1Cp4.1LG01g03260.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009606Protein of unknown function DUF1218PFAMPF06749DUF1218coord: 58..149
score: 1.4
NoneNo IPR availablePANTHERPTHR31769FAMILY NOT NAMEDcoord: 1..210
score: 2.2
NoneNo IPR availablePANTHERPTHR31769:SF8SUBFAMILY NOT NAMEDcoord: 1..210
score: 2.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g03260Cucsa.093840Cucumber (Gy14) v1cgycpeB0191
Cp4.1LG01g03260CmaCh16G002360Cucurbita maxima (Rimu)cmacpeB351
Cp4.1LG01g03260CmaCh04G003790Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g03260CmoCh16G002540Cucurbita moschata (Rifu)cmocpeB311
Cp4.1LG01g03260CmoCh04G004000Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g03260Cla010685Watermelon (97103) v1cpewmB421
Cp4.1LG01g03260Csa4G025740Cucumber (Chinese Long) v2cpecuB401
Cp4.1LG01g03260MELO3C017618Melon (DHL92) v3.5.1cpemeB425
Cp4.1LG01g03260ClCG01G005010Watermelon (Charleston Gray)cpewcgB372
Cp4.1LG01g03260ClCG07G017290Watermelon (Charleston Gray)cpewcgB403
Cp4.1LG01g03260CSPI04G04390Wild cucumber (PI 183967)cpecpiB398
Cp4.1LG01g03260Lsi09G005280Bottle gourd (USVL1VR-Ls)cpelsiB314
Cp4.1LG01g03260Lsi07G001450Bottle gourd (USVL1VR-Ls)cpelsiB374
Cp4.1LG01g03260MELO3C017618.2Melon (DHL92) v3.6.1cpemedB497
Cp4.1LG01g03260CsaV3_5G005270Cucumber (Chinese Long) v3cpecucB0540
Cp4.1LG01g03260CsaV3_4G004490Cucumber (Chinese Long) v3cpecucB0498
Cp4.1LG01g03260Bhi01G001973Wax gourdcpewgoB0519
Cp4.1LG01g03260CsGy4G004300Cucumber (Gy14) v2cgybcpeB503
Cp4.1LG01g03260Carg16777Silver-seed gourdcarcpeB1216
Cp4.1LG01g03260Carg08475Silver-seed gourdcarcpeB1001
Cp4.1LG01g03260Carg08052Silver-seed gourdcarcpeB0527
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG01g03260Cp4.1LG14g05200Cucurbita pepo (Zucchini)cpecpeB234
Cp4.1LG01g03260Cp4.1LG05g07200Cucurbita pepo (Zucchini)cpecpeB403
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g03260Wax gourdcpewgoB0477
Cp4.1LG01g03260Bottle gourd (USVL1VR-Ls)cpelsiB340
Cp4.1LG01g03260Watermelon (97103) v1cpewmB390